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Jeremy Miller 1,2 , Donat Agosti 2,3 , Guido Sautter 2 , Terry Catapano 2,4 , David King 5 , Serrano Pereira 1 , Rutger Vos 1 , Soraya Sierra 1 Unlocking the Legacy The Untapped Value of Data in Taxonomic Literature 1. Naturalis Biodiveristy Center, Leiden, Netherlands; 2. Plazi, Zinggstrasse 16, Bern, Switzerland; 3. Naturhistorisches Museum, Bern, Switzerland; 4. Columbia University, New York, United States of America; 5. The Open University, Milton Keynes, United Kingdom Report from the pro-iBiosphere Spider Pilot and data visualization hackathon

Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

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Unlocking the Legacy: The untapped value of data in taxonomic literature Jeremy Miller, Donat Agosti, Guido Sautter Terry Catapano, David King, Serrano Pereira, Rutger Vos, Soraya Sierra pro-iBiosphere final conference, 12 June 2014, Bouchart Castle, Meise, Belgium

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Page 1: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Jeremy Miller1,2, Donat Agosti2,3, Guido Sautter2, Terry Catapano2,4, David King5, Serrano Pereira1, Rutger Vos1, Soraya Sierra1

Unlocking the LegacyThe Untapped Value of Data in Taxonomic Literature

1. Naturalis Biodiveristy Center, Leiden, Netherlands; 2. Plazi, Zinggstrasse 16, Bern, Switzerland; 3. Naturhistorisches Museum, Bern, Switzerland; 4. Columbia University, New York, United States of America; 5. The Open University, Milton Keynes, United Kingdom

Report from the pro-iBiosphere Spider Pilot and data visualization hackathon

Page 2: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Records: 230,000,000Species: 165,000

Species occurrence data in GBIF: Animals

Page 3: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

GBIF Records Species in GBIF

Plants

Birds

Hymenoptera

Spiders

Other

Plants

BirdsHymenoptera

Spiders

animalsOtheranimals

% D

escr

ibed

spec

ies i

n GB

IF

Species occurrence data in GBIF

Page 4: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Moritz, C., K.S. Richardson, S. Ferrier, G.B. Monteith, J. Stanisic, S.E. Williams, T. Whiffin. 2001. Biogeographical concordance and efficiency of taxon indicators for establishing conservation priority in a tropical rainforest biota. Proceedings of the Royal Society, London, Series B 268: 1875-1881.

Insects

Snails and Insects•strong predictors of conservation priorities for vertebrates, but not vice versa•have finer-scale distribution patterns and higher local endemicity than vertebrates and plants

Snails Vertebrates LauraceaeSnailsVertebratesLauraceae

InsectsVertebratesLauraceae

InsectsSnailsVertebrates

InsectsSnailsLauraceae

Testing surrogates to establish conservation priorities

Value of species occurrence data

Page 5: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Number of Collection Records in Physical Versus Digital Form, by Collection

Page 6: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Number of Collection Records in Physical Versus Digital Form, by Collection

Page 7: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Number of Collection Records in Physical Versus Digital Form, by Collection

Page 8: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Collect specimens

Thanks: Lyubomir Penev

Page 9: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Make Observations

Thanks: Lyubomir Penev

Page 10: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Analyze Data and Write Manuscript

Thanks: Lyubomir Penev

Page 11: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Analyze Data and Write Manuscript

Primary Data

Thanks: Lyubomir Penev

Page 12: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Primary Data

Thanks: Lyubomir Penev

Page 13: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Primary Data

Thanks: Lyubomir Penev

Page 14: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Cybertaxonomic Publication Venue

Drawings: slavenapeneva.com

Primary Data

Thanks: Lyubomir Penev

Page 15: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Cybertaxonomic Publication Venue

Drawings: slavenapeneva.com

Primary Data

Thanks: Lyubomir Penev

Page 16: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Primary Data

TraditionalPublication Venue

Thanks: Lyubomir Penev

Page 17: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Primary Data

TraditionalPublication VenuePDF Prison

Thanks: Lyubomir Penev

Page 18: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Primary Data

TraditionalPublication VenuePDF Prison

GoldenGATE XML Markup Editor

TaxonX XML Schema

Thanks: Lyubomir Penev

Page 19: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

Drawings: slavenapeneva.com

Primary Data

TraditionalPublication Venue

Thanks: Lyubomir Penev

Page 20: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

pro-iBiosphere spider pilot

12,000 Taxonomic Papers on SpidersSince 1757

Page 21: Unlocking the Legacy: The untapped value of data in taxonomic literature #pibmei

pro-iBiosphere spider pilot

34 (~7%)

~500

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Countries (Region)Australia (Queensland)

Export species materials citations (DwC)

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PUBLISHED BYPlazi.org taxonomic treatmentsdatabase

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pro-iBiosphere spider pilot

5170 specimens4062 plottable specimens from1138 unique locations