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O&M Specimen model – alignments with PROV, BCO
Simon Cox | Research Scientist | Environmental Information Infrastructures3 September 2015
LAND AND WATER
IGSN Metadata workshop - 2015-09-03
Sampling features & specimens
«FeatureType»OM_Observation
«FeatureType»SF_SamplingFeature
+ l ineage: LI_Lineage [0..1]+ parameter: NamedValue [0..*]
constraints{sampledFeature->forAll(not (oclIsKindOf(SF_SamplingFeature) or oclIsKindOf(OM_Observation)))}
SamplingFeatureComplex
+ role: GenericName
«FeatureType»GFI_Feature
«FeatureType»SF_SamplingFeatureCollection
Intention
+sampledFeature
1..*
0..*
+relatedSamplingFeature0..*
Collection
+member 1..*Design
+relatedObservation 0..*
SF_Specimen
+ currentLocation: Location [0..1]+ materialClass: GenericName+ samplingLocation: GM_Object [0..1]+ samplingMethod: SF_Process [0..1]+ samplingTime: TM_Object+ size: Measure [0..1]+ specimenType: GenericName [0..1]
SF_SamplingFeature
+ lineage: LI_Lineage [0..1]+ parameter: NamedValue [0..*]
Location
+ geometryLocation: GM_Object+ nameLocation: EX_GeographicDescription
GFI_Feature
SamplingFeatureComplex
+ role: GenericName
PreparationStep
+ processOperator: CI_ResponsibleParty [0..1]+ time: TM_Object
SF_Process
+processingDetails
0..*
Intention
+sampledFeature 1..*
0..*
+relatedSamplingFeature0..*
Cox, OGC Abstract Specification – Topic 20: Observations and Measurements 2.0 ISO 19156:2011 Geographic Information – Observations and measurements
IGSN Metadata workshop - 2015-09-03
sam-lite ontology
Cox, SJD, Ontology for observations and sampling features, with alignments to existing models, Semantic Web Journal (in review) http://www.semantic-web-journal.net/content/ontology-observations-and-sampling-features-alignments-existing-models
IGSN Metadata workshop - 2015-09-03
Core PROV model
samfl:Specimen rdfs:subClassOf prov:Entity .samfl:Process rdfs:subClassOf prov:Agent .
IGSN Metadata workshop - 2015-09-03
Specimen preparation and observation traceLifecycle events modelled as prov:Activity instances
• Analysis• Sieving• Grinding• Splitting• Specimen retrieval
Cox, SJD, Car, NJ, PROV and Real Things, MODSIM 2015
IGSN Metadata workshop - 2015-09-03
Other alignments and extensions
prov:Entity ← :PhysicalEntity ← :Specimen prov:Entity ← prov:Plan ← :SamplingProtocol
prov:Agent ← :SampleProcessingSystem ← :GrindingSystem, :PolishingSystem, :DissolvingSystem, :FusingSystemprov:Agent ← :SampleRetrievalSystem ← :FieldSamplingSystemprov:Agent ← :SubSamplingSystem ← :BiasedSplittingSystem ← :SizeSeparationSystem , :DensitySeparationSystem, :MagneticSeparationSystemprov:Agent ← Instrument , Sensorprov:wasAssociatedWith ← :wasControlledBy, :wasSponsoredBy, :wasRequestedByprov:wasDerivedFrom ← :unbiasedSplitFrom, :biasedSplitFromprov:wasDerivedFrom ← prov:hadPrimarySource ← :fieldSpecimen
IGSN Metadata workshop - 2015-09-03
Biological Collections Ontology
IGSN Metadata workshop - 2015-09-03
Biological Collections Ontology
BFO:IndependentContinuant ↔ prov:Entity ← BFO:MaterialEntity ↔ :PhysicalEntity ← BCO:MaterialSample ↔ :Specimen
BFO:Process ← prov:Activity observing, sampling, extraction processes
IGSN Metadata workshop - 2015-09-03
O&M, OBOE, BCO, BFO alignment
• Walls, Jones, Cox, Guralnick, Schildhauer, Buttigieg – coming soon!
LAND AND WATER
Thank youCSIRO Land and WaterSimon CoxResearch Scientistt +61 3 9252 6342e [email protected] www.csiro.au/people/simon.cox