Climbing in the tree of life
Luke J. Harmon
PART 1:
VIEWEmbrace of the Serpent, 2015
PART 1:
VIEWEmbrace of the Serpent, 2015
Viewing the tree of life with OneZoom
Harmon and Rosindell PLoS Biology 2012
YouTube - Carlo Cabanilla
YouTube - Carlo Cabanilla
3,000,000,000 YEARS
1,781,769 SPECIES
3,000,000,000 YEARS
1,781,769 SPECIES
3,000,000,000 YEARS
558,585 UNIQUE VISITORS
Photo: James RosindellUniversity of Tübingen
PART 2:
UNDERSTANDEmbrace of the Serpent, 2015
PART 2:
UNDERSTANDEmbrace of the Serpent, 2015
Photo: Erin McNeaney
Photo by Sherm Davis
https://silviapvadi.wordpress.com/2015/04/10/cyanobacteria/
Able to fix nitrogen?
Yes No
strong evidence for rapid gains or losses in morphological and ecological character states
early in the Earth’s history.
Embrace of the Serpent, 2015
Embrace of the Serpent, 2015
Slingjaw wrasse, Epibulus insidiator
Video from Peter Wainwright
Slingjaw wrasse, Epibulus insidiator
Video from Peter Wainwright
Data from Revell and Collar 2009
PART 3:
FACILITATEEmbrace of the Serpent, 2015
PART 3:
FACILITATEEmbrace of the Serpent, 2015
www.arborworkflows.com
Example:
a biologist wants to compare phylogenetic trees of beetles and their host plants.
Example:
Is there evidence of cospeciation?
a biologist wants to compare phylogenetic trees of beetles and their host plants.
Arbor is web software from the ground up
List of species
Lifemapper
Species range data
List of species
Lifemapper
Species range data
Open Tree of Life
Phylogenetic tree +
Timetreeof life
Branch lengths
List of species
Lifemapper
Species range data
Open Tree of Life
Phylogenetic tree +
Timetreeof life
Branch lengths
Biogeographicreconstruction
Arbor is optimizedfor big trees
We have recoded Bayesian comparative algorithms to speed up analyses on huge trees
Arbor can be installedalmost anywhere
Arbor is easyto use
Luke Harmon Chelsea Specht Bob Thacker Jorge Soberon Jeff Baumes Charlie Hughes Curt Lisle
www.arborworkflows.com
Metropolis, 1927
Metropolis, 1927