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My presentation at BioHackathon 2010, http://hackathon3.dbcls.jp/, an event devoted to semantic web for life science
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Alberto Labarga
Computer Science DepartmentUniversity of GranadaSpain
[email protected]://www.scientifik.infohttp://twitter.com/scientifikinfohttp://www.linkedin.com/in/albertolabarga
ProjectsBionotate, Qfactor, EGC
Research interests
• Bioinformatics– Gene expression analysis (microarrays, RT-PCR, MPS)
• Text mining– Automatic names and relations extraction
– Collaborative annotation and tagging
• Semantic web– LinkedData
• Data integration– Web services
@Biohackathon2010
• Bionotate (http://bionotate.sourceforge.net)
– Science Commons text annotation service
– Integration with BioRDF
– Publish results as LinkedData
• Beyond Elsevier Grand Challenge
– Integrate Reflect, Coraal, Whatizit
– Semantic navigation of the literature ecosystem(authors, citations, topics, etc)
How can we use technology to make us smarter, individually and collectively?Enable Collective IntelligenceBring Intelligence to the Interface
Search/Discover Serendipitous FindingCollaborative SearchingStructural Search
Gather CollectingManageOrganizing
Create AnnotatingReview & RateDescribeWrite
Share PublishSharing
Integrated searchContinual queriesPaper recommendationAlert
Project and Personal Internal searchRefereed and Grey literature
Tag, annotate, rate Multi-author authoring
Linked DataInterfaces
XSLT+DHTML +CSS
