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Unit One Parts 3 & 4: molecular bonding

lecture 3: 123.101

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Page 1: lecture 3: 123.101

Unit One Parts 3 & 4:molecular bonding

Page 2: lecture 3: 123.101

Unit OneParts3&4

Locating electronsDescribing bondsShape of molecules

Pages 34 & 43

H O H3C BrHO

CH3Br

Page 3: lecture 3: 123.101

Unit OneParts3&4

Locating electronsDescribing bondsShape of molecules

Pages 34 & 43

H O H3C BrHO

CH3Br

if we know where electrons are we can

predict reactions and shape...they really are key to understanding

chemistry

Page 4: lecture 3: 123.101

Unit OneParts3&4

Locating electronsDescribing bondsShape of molecules

Pages 35 & 45

H O H3C BrHO

CH3Br

as I’ve taken the material out of order,

I’ll give you some page numbers

Page 5: lecture 3: 123.101

what are bonds?

Page 6: lecture 3: 123.101

Na Cl

Ionic bonds

Na Cl

Pg34

here we have an atom of sodium (Na)

and an atom of chlorine (Cl)

Page 7: lecture 3: 123.101

Na Cl

Ionic bonds

Na Cl

Pg34

if we take one electron from Na and

give it to Cl...

Page 8: lecture 3: 123.101

ClNa

Ionic bonds

Na+ Cl-

Pg34

we get 2 charged species (cation = positive charge & anion = negative charge)

Page 9: lecture 3: 123.101

Na+

Ionic bonds

Cl-

NaCl

Pg34

opposite charges attract and give us an

ionic bond

Page 10: lecture 3: 123.101

covalent bondsH H

Pg34

if we bring 2 atoms together and they...

Page 11: lecture 3: 123.101

covalent bondsH H

Pg34

share their 2 electrons we have a

covalent bond

Page 12: lecture 3: 123.101

covalent bondsH H

H H

2electrons per bond Pg

34

this is the bond we’ll be dealing with most often and is represented by

the black line

Page 13: lecture 3: 123.101

covalent bondsH H

H H

2electrons per bond Pg

34

please remember that this line is

2 electrons

Page 14: lecture 3: 123.101

chemistrya pain

these areextremes just

Page 15: lecture 3: 123.101

reality is in the middle

Page 16: lecture 3: 123.101

where do we find electrons?

Page 17: lecture 3: 123.101

ONE DOES NOT SIMPLY

Page 18: lecture 3: 123.101

Aufbau Principle

lowest energy orbital

THIS IS THE LONG VERSION...NOT THE

VERSION I DO IN THE LECTURES

Page 19: lecture 3: 123.101

Aufbau Principle

lowest energy orbital

don’t worry about the name...just that

electrons like to have lowest energy

possible...

Page 20: lecture 3: 123.101

rather like many students...

Page 21: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

2s 2px 2py 2pz

1s

energy

hydrogen1s1

1H

Pg43

Page 22: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

2s 2px 2py 2pz

1s

energy

hydrogen1s1

1H

Pg43

just one electron so in first orbital

Page 23: lecture 3: 123.101

Pauli Exclusion Principle

no two electrons are identical

Page 24: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

2s 2px 2py 2pz

1s

energy

helium1s2

2He

Pg43

Page 25: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

2s 2px 2py 2pz

1s

energy

helium1s2

2He

Pg43

one electron has spin +½ (up) and the other

spin –½ (down)

Page 26: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

2s 2px 2py 2pz

1s

energy

helium1s2

2He

Pg43

doesn’t matter what it means...just remember an electron can only be

up or down

Page 27: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

2s 2px 2py 2pz

1s

energy

helium1s2

2He

Pg43

so can only ever have two electrons

per orbital

Page 28: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

3Li

lithium1s22s1

Pg43

Page 29: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

3Li

lithium1s22s1

Pg43

lithium obeys both rules...fill lowest orbital first (until full) then fill

next lowest)

Page 30: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

4Be

beryllium1s22s2

Pg43

...adding one more electron is easy...

Page 31: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

5B

boron1s22s22p1

Pg43

...and another...

Page 32: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

5B

boron1s22s22p1

Pg43

it could go in any of 2px, 2py or 2pz,

they’re identical...well energetically they are

Page 33: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

5B

boron1s22s22p1

Pg43

but, where does the next (and most

important as its carbon) go??

Page 34: lecture 3: 123.101

Hund's rule

electrons as far apart as p o s s i b l e

(degenerate orbitals )(as long as it doesn’t

violate any of the previous rules!)

Page 35: lecture 3: 123.101

Hund's rule

electrons as far apart as p o s s i b l e

(degenerate orbitals )

makes sense as like charges always

repel...

Page 36: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

6C

carbon

1s22s22px12py1

1s22s22p2

Pg43

Page 37: lecture 3: 123.101

1s

2s

2px 2py 2pz

energy

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

6C

carbon

1s22s22px12py1

1s22s22p2

Pg43

could be 2pz, makes no

difference...

Page 38: lecture 3: 123.101

that's a lot of electrons...

luckily we don’t care about all them...

Page 39: lecture 3: 123.101

all you have toremember is...

©jaci XIII@flickr

Page 40: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

6C

Pg45

carbon1s22s22p2

atomic number

number of electrons=

Page 41: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

6C

carbon

1s22s22px12py1

1s22s22p2

1s

2s

2px 2py 2pz

energy

Valence electrons

Pg43

Page 42: lecture 3: 123.101

1 18

H 2 13 14 15 16 17 He

Li Be B C N O F Ne

Na Mg 3 4 5 6 7 8 9 10 11 12 Al Si P S Cl Ar

K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr

6C

carbon

1s22s22px12py1

1s22s22p2

1s

2s

2px 2py 2pz

energy

Valence electrons

Pg44

only need consider high energy electrons or those on the outside called the

valence electrons.

Page 43: lecture 3: 123.101

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

group 1 2 13 14 15 16 17 18

H He

Li Be B C N O F Ne Pg44

if we consider the Bohr model of the atom, the

one where we think of an atom resembling a planet with moons orbiting (or

the solar system)

Page 44: lecture 3: 123.101

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

group 1 2 13 14 15 16 17 18

H He

Li Be B C N O F Ne Pg44

then the valence electrons are those on the outer edge (like Neptune

for young-upstarts or Pluto for us oldies)

Page 45: lecture 3: 123.101

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

group 1 2 13 14 15 16 17 18

H He

Li Be B C N O F Ne Pg44

then the valence electrons are those on the outer edge (like Neptune

for young-upstarts or Pluto for us oldies)

Page 46: lecture 3: 123.101

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

group 1 2 13 14 15 16 17 18

H He

Li Be B C N O F Ne Pg41

absolute rubbish...but more comprehendible!

Page 47: lecture 3: 123.101

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

group 1 2 13 14 15 16 17 18

H He

Li Be B C N O F Ne Pg41

an easy we to remember the number of valence electrons is

to take group number...

Page 48: lecture 3: 123.101

valence electrons 1 2 3 4 5 6 7 8

H He

Li Be B C N O F Ne

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

Pg41

...and ignore first ‘1’

Page 49: lecture 3: 123.101

valence electrons 1 2 3 4 5 6 7 8

H He

Li Be B C N O F Ne

C C

1s22s22p2 2s22p2

N N

1s22s22p3 2s22p3

Pg41

so oxygen (group 16) has

6 valence electrons

Page 50: lecture 3: 123.101

what do valence electrons tell us?

Page 51: lecture 3: 123.101

the number of bonds

H

OHH H

1 2

34

Page 52: lecture 3: 123.101

the shape of molecules

109°

Page 53: lecture 3: 123.101

how?

Page 54: lecture 3: 123.101

Ne

1s22s22p6

noble gas

atoms are happy if they

have a full valence shell...

Page 55: lecture 3: 123.101

Ne

1s22s22p6

noble gas

...commonly this means 8

electrons

Page 56: lecture 3: 123.101

8 fullshellelectrons

Ne

Page 57: lecture 3: 123.101

C

1s22s22p24 bonds

N

1s22s22p33 bonds

O

1s22s22p42 bonds Pg

36

Page 58: lecture 3: 123.101

C

1s22s22p2

4 valence

electrons

Pg45

so for carbon to get to 8 it needs 4 more electrons

Pg45

Page 59: lecture 3: 123.101

Pg46 4 bonds

Cor 4 new

covalent bonds

Pg46

Page 60: lecture 3: 123.101

C

1s22s22p24 bonds

N

1s22s22p33 bonds

O

1s22s22p42 bonds Pg

36

nitrogen has 5 valence

electrons...so needs 3 more...

Page 61: lecture 3: 123.101

N

1s22s22p3

5 valence

electrons

Pg46

Page 62: lecture 3: 123.101

Pg46 3 bonds

Nso forms 3

covalent bonds

Page 63: lecture 3: 123.101

C

1s22s22p24 bonds

N

1s22s22p33 bonds

O

1s22s22p42 bonds Pg

36

oxygen needs 2 more electrons so forms 2 covalent

bonds

Page 64: lecture 3: 123.101

O

1s22s22p4 Pg46

6 valence

electrons

Page 65: lecture 3: 123.101

O

Pg46 2 bonds

Page 66: lecture 3: 123.101

C

1s22s22p24 bonds

N

1s22s22p33 bonds

O

1s22s22p42 bonds Pg

34

hopefully, you can see this is where those magic numbers in lecture one came

from!

Page 67: lecture 3: 123.101

8Octet rule: 8 valence electrons

CHH

HH

Pg36

Page 68: lecture 3: 123.101

8Octet rule: 8 valence electrons

Pg37/46

CHN

HH O

H

H

Page 69: lecture 3: 123.101

C + + 4HO

+ F FH ≡ H F

Lewis structures

Hydrofluoric acid HF

Methanol CH3OH

H

CH

HH O H ≡ H C

H

O

H

H

use octet rule to draw the structure of stable

molecules...

Pg37/46

Page 70: lecture 3: 123.101

Pg41

C + + 4HO

+ F FH ≡ H F

Lewis structures

Hydrofluoric acid HF

Methanol CH3OH

H

CH

HH O H ≡ H C

H

O

H

H

H–F easy..H = 2 electrons (full s

orbital) & F = 8...

Page 71: lecture 3: 123.101

Pg37/46

C + + 4HO

+ F FH ≡ H F

Lewis structures

Hydrofluoric acid HF

Methanol CH3OH

H

CH

HH O H ≡ H C

H

O

H

H

Lewis structure shows all valence electrons represented by our

simple diagram H–F

Page 72: lecture 3: 123.101

C + + 4HO

+ F FH ≡ H F

Lewis structures

Hydrofluoric acid HF

Methanol CH3OH

H

CH

HH O H ≡ H C

H

O

H

H

works for more complex

molecules

Pg37/46

Page 73: lecture 3: 123.101

C + + 4HO

+ F FH ≡ H F

Lewis structures

Hydrofluoric acid HF

Methanol CH3OH

H

CH

HH O H ≡ H C

H

O

H

H

Note: it helps to leave lone pairs (of electrons)

on diagram...this is where a lot of chemistry

occurs...

Pg37/46

Page 74: lecture 3: 123.101

Acetone CH3COCH3

C + + 6HO3

Pg44

how do we deal with more complex

molecules?

Page 75: lecture 3: 123.101

CC C

O

HH

H

HH

H

Acetone CH3COCH3

C + + 6HO3

Pg44

first draw all the atoms where you think

they might go...

Page 76: lecture 3: 123.101

Acetone CH3COCH3

C + + 6HO3

CC

CH

HHH

H H

O

Pg44

now join all the atoms together...some of the

atoms have full valence shells so we

can draw them in as on the next slide...

Page 77: lecture 3: 123.101

CC

C

O

H

HHH

H H

Acetone CH3COCH3

C + + 6HO3

Pg44

the central C and O both have only 7

valence electrons...

Page 78: lecture 3: 123.101

CC

C

O

H

HHH

H H

Acetone CH3COCH3

C + + 6HO3

H3CC

CH3

O ≡O

Pg44

...but if they share 4 electrons they both have 8 valence electrons...this gives us a double bond

(alkene)

Page 79: lecture 3: 123.101

Borohydride anion BH4––

Pg44

what happens if we have a negative

charge (anion)?

Page 80: lecture 3: 123.101

B + 3H + H

Borohydride anion BH4––

Pg44

take the atoms as normal and...

Page 81: lecture 3: 123.101

B + 3H + H

Borohydride anion BH4––add electron

Pg44

...add an electron

Page 82: lecture 3: 123.101

B + 3H + H

Borohydride anion BH4––add electron

BHH

HH H B

H

H

H

Pg44

Page 83: lecture 3: 123.101

B + 3H + H

Borohydride anion BH4––add electron

BHH

HH H B

H

H

H

Pg44

does it matter which atom we give

the electron to?

Page 84: lecture 3: 123.101

B + 3H + H

Borohydride anion BH4––add electron

BHH

HH H B

H

H

H

Pg44

does it matter which atom we give

the electron to?

no! (but in this case H– makes more chemical sense)

Page 85: lecture 3: 123.101

Ammonium cation NH4++lose electron

Pg44

if we have a positive charge (cation) we do the opposite...

Page 86: lecture 3: 123.101

N + 3H + H

Ammonium cation NH4++lose electron

Pg44

start with our normal atoms...

Page 87: lecture 3: 123.101

N + 3H + H

Ammonium cation NH4++lose electron

Pg44

then remove an electron

Page 88: lecture 3: 123.101

NHH

HH H N

H

H

H

≡N + 3H + H

Ammonium cation NH4++lose electron

Pg44

Page 89: lecture 3: 123.101

where is the charge?

is it on one atom?

Page 90: lecture 3: 123.101

all over the molecule...

No, its all over the molecule! But...

Page 91: lecture 3: 123.101

but the truth isn't useful, so...

Page 92: lecture 3: 123.101

formal charges localise charge on an atom...

Page 93: lecture 3: 123.101

formal charges localise charge on an atom...

this is ‘electron book-keeping’...we are just

assigning charge to one atom to help explain

chemistry...

Page 94: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

...on an atom

Pg47

Page 95: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons...according to

the atoms position in the periodic table

Pg47

Page 96: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

...in lone pairs...

Pg47

Page 97: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

...or the number of bonds to that

atom

Pg47

Page 98: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

N + 3H NHH

HH+ H

N fc = 5-0-½(8)=+1

H N

H

H

H

≡cation

Pg47

Page 99: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

N + 3H NHH

HH+ H

N fc = 5-0-½(8)=+1

H N

H

H

H

≡cationno charge on H as:

H = 1-0-½(2) = 0

Pg47

Page 100: lecture 3: 123.101

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

– number of bonds

N + 3H NHH

HH+ H

N fc = 5-0-4=+1

H N

H

H

H

≡cation

Pg47

the simplified formula (just use number of bonds)

Page 101: lecture 3: 123.101

O O O+ + O OO

O OO

≡O3ozone

neutral

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

Pg47

Page 102: lecture 3: 123.101

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-½(4)=0

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

Pg47

Page 103: lecture 3: 123.101

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1rhs O; fc = 6-6-½(2)=-1

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

Pg47

Page 104: lecture 3: 123.101

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1rhs O; fc = 6-6-½(2)=-1

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

Pg47

Page 105: lecture 3: 123.101

O OO

≡atom's formal

charges

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1rhs O; fc = 6-6-½(2)=-1

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

Pg47

Page 106: lecture 3: 123.101

O OO

≡atom's formal

charges

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1rhs O; fc = 6-6-½(2)=-1

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

ozone neutral as + & – cancel each

other out

Pg47

Page 107: lecture 3: 123.101

O OO

≡atom's formal

charges

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-½(4)=0 central O; fc = 6-2-½(6)=+1rhs O; fc = 6-6-½(2)=-1

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

–½ number of shared electrons

these charges explain why ozone is so

reactive!

Pg47

Page 108: lecture 3: 123.101

O OO

≡atom's formal

charges

O O O+ + O OO

O OO

≡O3ozone

neutral

lhs O; fc = 6-4-2=0 central O; fc = 6-2-3=+1rhs O; fc = 6-6-1=-1

formal charge

(fc)=

number of valence

electrons–

number of unshared electrons

– number of bonds

Pg47

the simplified formula (just use number of bonds)

Page 109: lecture 3: 123.101

a bond

is 2electrons

O

OH

Page 110: lecture 3: 123.101

a bond

is 2electrons

Page 111: lecture 3: 123.101

simple model

Page 112: lecture 3: 123.101

quantum model more accurate...

Page 113: lecture 3: 123.101

Atomic orbitalsit's a quantum world...

we’ve looked at a nice simple model

so far...

Page 114: lecture 3: 123.101

Atomic orbitalsit's a quantum world...

mathematicians and physicists have shown it’s a bit more complicated in ‘reality’

Page 115: lecture 3: 123.101

but I don't like maths...

so...here's some pretty pictures...

Page 116: lecture 3: 123.101

90%atomic orbital

Pg36

atomic orbital is the volume of space in which there is a 90% chance of

finding an electron

Page 117: lecture 3: 123.101

2atomic orbital

electrons Pg37

remember: a maximum of 2 electrons per

orbital

Page 118: lecture 3: 123.101

2sPic: Dr. Jonathan Gutow

Pg38

a 1s orbital is also a sphere...just a

lot smaller

Page 119: lecture 3: 123.101

2sPic: Dr. Jonathan Gutow

Pg38

let’s ignore this nasty little effect

of maths...

Page 120: lecture 3: 123.101

x

y

zpx

x

y

zpy

x

y

zpz

2p Pg38

Page 121: lecture 3: 123.101

x

y

zpx

x

y

zpy

x

y

zpz

2p each of the three 2p orbitals is

dumbbell shaped... Pg

38

Page 122: lecture 3: 123.101

x

y

zpx

x

y

zpy

x

y

zpz

2p ...they are identical in all ways except... Pg

38

Page 123: lecture 3: 123.101

x

y

zpx

x

y

zpy

x

y

zpz

2p ...they point in different directions (hence the names) Pg

38

Page 124: lecture 3: 123.101

x

y

zpx

x

y

zpy

x

y

zpz

2p Pg34

this is one orbital (just has two different

coloured areas)

Page 125: lecture 3: 123.101

afraid?

Page 126: lecture 3: 123.101

you will be...

Page 127: lecture 3: 123.101

what is a bond?

our simple Lewis model helps explain a lot of chemistry...especially

reactions...

Page 128: lecture 3: 123.101

what is a bond?

...but it fails to explain such fundamental

concepts as shape...

Page 129: lecture 3: 123.101

what is a bond?

...actually, it can explain shape if we use VSEPR theory...but anyways, lets use those orbitals

Page 130: lecture 3: 123.101

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg37

here we have 2 hydrogen atoms

(each with 1 electron in a 1s orbital)

Page 131: lecture 3: 123.101

σ*

σH–H

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg35

to form a covalent bond they must

share their electrons...

Page 132: lecture 3: 123.101

σ*

σH–H

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg35

...this is achieved by combining the

two atomic orbitals to give...

Page 133: lecture 3: 123.101

σ*

σH–H

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg35

...a new molecular orbital, a sigma σ orbital (or bond)

Page 134: lecture 3: 123.101

σ*

σH–H

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg35

...this bonding orbital is lower in energy than the

atoms...so a bond will form

Page 135: lecture 3: 123.101

σ*

σH–H

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg37

a consequence of the maths is we also get an

anti-bonding sigma orbital (σ*)...2 orbitals

must give 2 new orbitals

Page 136: lecture 3: 123.101

σ*

σH–H

energy

H•1s

H•1s

H HH• + H•

single (σ) bond

Pg37

...but lets ignore this confusing little devil for

the time being!

Page 137: lecture 3: 123.101

single (σ) bond

H HPg47

it is called a σ orbital as is symmetrical along

bond axis (you can rotate it like a cylinder and it

doesn’t change)

Page 138: lecture 3: 123.101

single (σ) bond

C• + H• C H

Pg37

all bonds to H are sigma (as all are like a

cylinder)...here we overlap 1s of H with 2p

of C and get sigma bond)

Page 139: lecture 3: 123.101

energy

σ*

σC•2py

C•2pyC–C

single (σ) bondPg38

if we take two 2p orbitals and combine them head-to-head

Page 140: lecture 3: 123.101

energy

σ*

σC•2py

C•2pyC–C

single (σ) bondPg38

...we get a sigma σ bonding

orbital...it is still like a cylinder...

Page 141: lecture 3: 123.101

energy

σ*

σC•2py

C•2pyC–C

single (σ) bondPg38

...this is the normal single

bond we observe in alkanes etc.

Page 142: lecture 3: 123.101

energy

σ*

σC•2py

C•2pyC–C

single (σ) bondPg38

this is one orbital NOT three

Page 143: lecture 3: 123.101

single (σ) bond

Pg35

the blue bit is the sigma orbital...ignore

the red orbitals for the time being...

Page 144: lecture 3: 123.101

single bond

σ (sigma) bond

C Cor the simple

version...THIS IS ALL YOU NEED TO KNOW

Page 145: lecture 3: 123.101

single bond

σ (sigma) bond

Page 146: lecture 3: 123.101

single bond

σ (sigma) bond

Page 147: lecture 3: 123.101

Csp3

Pg38

an atom with 4 σ bonds is called an sp3 atom (as 1 x s and 3 x

p used in bonding)

Page 148: lecture 3: 123.101

sp3 1

243

YOU NEED TO KNOW THIS

4 points

Page 149: lecture 3: 123.101

tetrahedral

sp3

109°

BrC

BrHH

Pg41

Page 150: lecture 3: 123.101

tetrahedral

sp3

109°

BrC

BrHH

Pg41

sp3 atoms are tetrahedral in shape

(the bonds stay as far apart as possible)

Page 151: lecture 3: 123.101

tetrahedral sp3

maximum separation of four pointsmaximum separation of four valence electron pairs

Page 152: lecture 3: 123.101

energy

carbon2pz

carbon2pz

C=Cπ*

C=Cπ

C C

C C

double (σ + π) bonds Pg38

two 2p orbitals can combine side-to-side

Page 153: lecture 3: 123.101

energy

carbon2pz

carbon2pz

C=Cπ*

C=Cπ

C C

C C

double (σ + π) bonds Pg38

the new bond is a pi π bond

Page 154: lecture 3: 123.101

energy

carbon2pz

carbon2pz

C=Cπ*

C=Cπ

C C

C C

double (σ + π) bonds Pg38

here we have a C–C σ bond and

a pi π bond

Page 155: lecture 3: 123.101

energy

carbon2pz

carbon2pz

C=Cπ*

C=Cπ

C C

C C

double (σ + π) bonds Pg38

the pi π bond is one orbital (with

two bits to it)

Page 156: lecture 3: 123.101

double (π) bond

Pg38

Page 157: lecture 3: 123.101

double (π) bond

Pg38

it is called a pi π orbital as rotation around the C–C

axis causes a change (from red to blue) so no longer

like a cylinder

Page 158: lecture 3: 123.101

double (π) bond

Pg35

remember: this is ONE orbital (just two different

coloured halves)

Page 159: lecture 3: 123.101

double (π) bond

Pg38

we have an inner σ bond (the rod) and an outer π

bond (the orbital) hence it is a double bond

Page 160: lecture 3: 123.101

no

rotation

Page 161: lecture 3: 123.101

H3C CH3

CH3

CH3

CH3

HO

H3C CH3

CH3

CH3 CH3

H

O

light isomerises complexedcis-retinal

multistep enzyme-catalysed reverse

process

Pg38

the p bond prevents alkenes from rotating (the two bonds can’t twist pass

each other)...

Page 162: lecture 3: 123.101

H3C CH3

CH3

CH3

CH3

HO

H3C CH3

CH3

CH3 CH3

H

O

light isomerises complexedcis-retinal

multistep enzyme-catalysed reverse

process

Pg38

this can effect shape of molecule

Page 163: lecture 3: 123.101

H3C CH3

CH3

CH3

CH3

HO

H3C CH3

CH3

CH3 CH3

H

O

light isomerises complexedcis-retinal

multistep enzyme-catalysed reverse

process

Pg38

we must break π bond before

alkene can rotate

Page 164: lecture 3: 123.101

H3C CH3

CH3

CH3

CH3

HO

H3C CH3

CH3

CH3 CH3

H

O

light isomerises complexedcis-retinal

multistep enzyme-catalysed reverse

process

Pg38

the change in shape initiates the visual cascade and

our sight

Page 165: lecture 3: 123.101

H3C CH3

CH3

CH3

CH3

HO

H3C CH3

CH3

CH3 CH3

H

O

light isomerises complexedcis-retinal

multistep enzyme-catalysed reverse

process

Pg38

why do you think red path is easy but blue hard?

Page 166: lecture 3: 123.101

double bond

π (pi) bond

or the simple version...

THIS IS ALL YOU NEED TO KNOW

Page 167: lecture 3: 123.101

double bond

π (pi) bond

Page 168: lecture 3: 123.101

sp2C

Pg38

an atom with three σ orbitals and one π

orbital is called an sp2 atom (we only count the orbitals used in making

s orbitals)

Page 169: lecture 3: 123.101

sp2

3 points

32

1

1 double bond and 2 single bonds and we

have an sp2 atom

Page 170: lecture 3: 123.101

trigonal planar

sp2120°Pg41

sp2 atoms are trigonal planar (flat and pointing to the

corners of a triangle)...again, this is because the orbitals

try to be as far apart as possible

Page 171: lecture 3: 123.101

trigonal planarsp2

Pg41

maximum separation of three pointsmaximum separation of three valence electron pairs

Page 172: lecture 3: 123.101

H C C Hσ

CH HCσ

σ

triple (σ + 2x π) bonds

π (2py + 2py)

π

π

π (2pz + 2pz)

Pg39

a triple bond (like an alkyne) is formed from one σ bond and two π bonds (at right angles to each other due to the direct of the p orbitals that made them)

Page 173: lecture 3: 123.101

H C C Hσ

CH HCσ

σ

triple (σ + 2x π) bonds

π (2py + 2py)

π

π

π (2pz + 2pz)

Pg39

so...two p orbitals combine head-to-head to give a σ bond

and two pairs of p orbitals combine side-to-side to give

the two π orbitals (& there are only two π orbitals)

Page 174: lecture 3: 123.101

spC

Pg39

an atom with two σ orbitals and two π orbitals

is called an sp atom (as two orbitals made the

basic σ skeleton)

Page 175: lecture 3: 123.101

sp2

points

1 2

Page 176: lecture 3: 123.101

linear

sp180°Pg40

an atom with two groups on it will be

linear (a straight line) as the orbitals stay as far apart as possible

Page 177: lecture 3: 123.101

linearsp

maximum separation of two pointsmaximum separation of two valence electron pairs

Page 178: lecture 3: 123.101

OCH3

CO2HH3C

O

H

H

O

OOH

OH

dynemicin A

Pg40

here is a real molecule...we should be able to identify the types

of atoms present...

Page 179: lecture 3: 123.101

OCH3

CO2HH3C

O

H

H

O

OOH

OH

dynemicin Asp3

tetrahedralPg40

four groups attached so it must be sp3 and as

those groups try to stay as far apart as possible

it is tetrahedral

Page 180: lecture 3: 123.101

OCH3

CO2HH3C

O

H

H

O

OOH

OH

dynemicin A

sp2trigonal planar

sp3tetrahedralPg

40

...only three groups so sp2 and flat, trigonal

planar

Page 181: lecture 3: 123.101

OCH3

CO2HH3C

O

H

H

O

OOH

OH

dynemicin A

splinear

sp2trigonal planar

sp3tetrahedralPg

40

straight line, two groups must be sp

and linear

Page 182: lecture 3: 123.101

OCH3

CO2HH3C

O

H

H

O

OOH

OH

dynemicin A

what is oxygen?

Pg40

Page 183: lecture 3: 123.101

OCH3

CO2HH3C

O

H

H

O

OOH

OH

dynemicin A

what is oxygen?

Pg40

...is it sp as attached to two carbon atoms?

Page 184: lecture 3: 123.101

HO

H

sp, sp2 or sp3?

look at a simpler system...water, sp,

sp2 or sp3?

Page 185: lecture 3: 123.101

sp, sp2 or sp3?

OHH

draw Lewis structure...

Page 186: lecture 3: 123.101

sp, sp2 or sp3?

OHH we have FOUR

groups around O, two lone pairs &

two H atoms. So it is...

Page 187: lecture 3: 123.101

HO

H

tetrahedral

sp3

Page 188: lecture 3: 123.101

HO

H

tetrahedral

sp3that is why we draw

water as a bent molecule...its shape

is based on a tetrahedron...

Page 189: lecture 3: 123.101

HO

H

tetrahedral

sp3...any atom with

four atoms or lone pairs around it is sp3 with all that

entails!

Page 190: lecture 3: 123.101

sp, sp2 or sp3?

OC

HHwhat kind of atom

is the oxygen?

Page 191: lecture 3: 123.101

1 double bondOC

HH

...and two lone pairs, so three

groups around the oxygen so it is...

Page 192: lecture 3: 123.101

trigonal planar

sp2OC

HH

Page 193: lecture 3: 123.101

sp, sp2 or sp3?

HCN what kind of atom is the nitrogen?

Page 194: lecture 3: 123.101

1 triple bond

HCN and one lone pair so two groups so it

is...

Page 195: lecture 3: 123.101

spHCNlinear

Page 196: lecture 3: 123.101

what have....we learnt?

•e l e c t r o n s where they are

•b o n d swhat they are

•s h a p e Courtesy: National Science Foundation

Page 197: lecture 3: 123.101

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