EBI is an Outstation of the European Molecular Biology Laboratory.

Core European (& Australian) barcoding data services

Guy Cochrane, EMBL-EBI

European Nucleotide Archive12.04.20232

Species Barcoding and EBI12.04.20233

EBI’s role• Broader dissemination of barcoding data as part of

INSDC• Development of data structures

• New INSDC fields• Minimal reporting standards – the CBoL Data Standard

• Submission services• Interactive tools• BOLD-EBI pipeline

• Repositories for of reference datasets• Raw data• Annotated sequence

• Data access tools• Environmental occurrence data

Species Barcoding and EBI12.04.20234

Development of specific data structures under INSDC

• /specimen_voucher="[<institution-code>:[<collection-code>:]]<specimen_id>“• /culture_collection="<institution-code>:[<collection-code>:]<culture_id>" • /bio_material="[ <institution-code>:[<collection-code>:]]<material_id>”

eg. /culture_collection=“ CCAP : RAC : 923/12.3 ”

eg. /specimen_voucher=“ UAM : Mamm : 97402 "

Species Barcoding and EBI12.04.20235

CBoL BARCODE data standard• Trace information• Annotated sequence • BARCODE keyword

12.04.20236

Species Barcoding and EBI

Interactive submissions

Species Barcoding and EBI12.04.20237

Interactive and REST retrieval

Species Barcoding and EBI12.04.20238

Interactive and REST retrieval

Species Barcoding and EBI12.04.20239

Interactive and REST retrieval

Species Barcoding and EBI12.04.202310

Interactive and REST retrieval

Species Barcoding and EBI12.04.202311

Environmental occurrence data

Species Barcoding and EBI12.04.202312

EBI’s further roles

• Discovery of barcoding loci• Development of sequencing data processing,

compression and assembly technology• Development of integrative technologies with collections• Integration with taxonomic databases

Species Barcoding and EBI12.04.202313

EBI services as infrastructure

• Programmatic focus for core services, notably sequence data repositories

• Leverage for European barcoding activities through ELIXIR, LIFEWATCH• EBI sequence data repositories at centre of European barcoding

services and utilities

• Leverage for Australian Barcoding through EMBL Australia

People and funding

ENA Team

Clara Amid, Lawrence Bower, Ana Cerdeño-Tárraga, Ying Cheng, Iain Cleland, Richard Gibson, Neil Goodgame, Mikyung Jang, Rasko Leinonen, Xin Liu, Arnaud Oisel, Nima Pakseresht, Sheila Plaister, Rajesh Radhakrishnan, Kethi Reddy, Stephane Riviere, Marc Rossello, Petra Ten Hoopen, Dmitriy Smirnov, Vadim Zalunin, Guy Cochrane

European Nucleotide Archive12.04.202314