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Visual Representation of Chemical Data in Virtual Worlds Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel University April 29, 2009 Education Days on Orange Island Andrew Lang Professor of Mathematics Oral Roberts University

Chemistry on Second Life April 09

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A presentation on chemistry in Second Life by Jean-Claude Bradley (Horace Moody) and Andrew Lang (Hiro Sheridan). It took place first on April 24, 2009 at the "Virtual Worlds: Libraries, Education and Museums" (VW LEM) conference on Infotainment Island. The second time was on April 29, 2009 at "Education Days" on Orange Island.

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Page 1: Chemistry on Second Life April 09

Visual Representation of Chemical Data in Virtual Worlds

Jean-Claude Bradley

E-Learning Coordinator College of Arts and Sciences

Associate Professor of ChemistryDrexel University

April 29, 2009

Education Days on Orange Island

Andrew Lang

Professor of MathematicsOral Roberts University

Page 2: Chemistry on Second Life April 09

What is the role of a chemistry teacher?

Produce chemists

by any means necessary!

Page 3: Chemistry on Second Life April 09

View vodcasts on iTunes or on a video iPod

Page 4: Chemistry on Second Life April 09

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CHEM 24189 students

CHEM 24364 students

Natural migration from F2F to screencast/podcast channels

Page 5: Chemistry on Second Life April 09

EduFrag Maze (without weapons)

Page 6: Chemistry on Second Life April 09

EduFrag Unreal Tournament (with weapons)

Page 7: Chemistry on Second Life April 09

Quiz Obelisks in Second Life (Eloise Pasteur)

Page 8: Chemistry on Second Life April 09

Student Assignments in Second Life

Page 9: Chemistry on Second Life April 09

Remixing Code and Content (Andy Lang)

Page 10: Chemistry on Second Life April 09

Student Created Exhibits on ACS Island

Page 11: Chemistry on Second Life April 09

Flying Around on a Molecule

Page 12: Chemistry on Second Life April 09

SMILES, InChIs and InChIKeys: the new language of chemistry

Page 13: Chemistry on Second Life April 09

Orac: The 3D Molecule RezzerFrom SMILES, InChIs and InChIKeys to 3D Structure

Page 14: Chemistry on Second Life April 09

How Orac Works

Page 15: Chemistry on Second Life April 09

Visualizing NMR spectra on Second Nature Island

Page 16: Chemistry on Second Life April 09

Interacting with NMR spectra (JCAMP-DX)

Page 17: Chemistry on Second Life April 09

Talk to the spectrum: Zoom 2.1-2.3

Page 18: Chemistry on Second Life April 09

The Spectral Game

Page 19: Chemistry on Second Life April 09

(Andy Lang, Tony Williams)

Open Data JCAMP spectra for education

(Andy Lang, Tony Williams, Robert Lancashire)

Page 20: Chemistry on Second Life April 09

Docking Demonstration on Drexel Island

Page 21: Chemistry on Second Life April 09

Enoyl Reductase (Peter Miller)

Page 22: Chemistry on Second Life April 09

Green Fluorescent Protein (David Reeves)

Page 23: Chemistry on Second Life April 09

Avidin: From PDB file to…..

Page 24: Chemistry on Second Life April 09

Avidin 3D structure in Second Life

Page 25: Chemistry on Second Life April 09

Falcipain-2 in SL & Hex 5.0

Page 26: Chemistry on Second Life April 09

Imine Formation Mechanism: Talk to the molecules!

Page 27: Chemistry on Second Life April 09

Atomic Orbitals

Page 28: Chemistry on Second Life April 09

Hydrogen Absorption Spectrum

Page 29: Chemistry on Second Life April 09

Selection Rules

Page 30: Chemistry on Second Life April 09

Multi-Dimensional Data Visualization

Page 31: Chemistry on Second Life April 09

5D Solubility Data Chemical Space

Page 32: Chemistry on Second Life April 09

Indexing Molecules on SecondLifeMolecules.wikispaces.com

Page 33: Chemistry on Second Life April 09

3D Periodic Table (ACS Freebie)

Page 34: Chemistry on Second Life April 09

Faculty “Offices” on Drexel Island

Page 35: Chemistry on Second Life April 09

Bradley Lab on Drexel Island

Page 36: Chemistry on Second Life April 09

Posters on Second Nature – with Bells

Page 37: Chemistry on Second Life April 09

Conferences on Second Nature

Page 38: Chemistry on Second Life April 09

ACS IslandKate Sellar (Finola Graves) - ACS

April Orr (Lirpa Dagger) - ACSJean-Claude Bradley (Horace Moody) - DrexelAndrew Lang (Hiro Sheridan) – Oral Roberts

Page 39: Chemistry on Second Life April 09

ACS Headquarters

Page 40: Chemistry on Second Life April 09

Virtual Poster Area

Page 41: Chemistry on Second Life April 09

Nanotubes and Felicene

Page 42: Chemistry on Second Life April 09

Chemical Landmarks Museum (Sponsored by Sigma-Aldrich & CHF)

Page 43: Chemistry on Second Life April 09

Chemical Landmarks Museum – HIV Exhibit

Page 44: Chemistry on Second Life April 09

Global Innovation Imperatives - Gii Red-Tide Exhibit – Fertilizer Run-Off

Page 45: Chemistry on Second Life April 09

Red-Tide Exhibit - Beach

Page 46: Chemistry on Second Life April 09

Red-Tide Exhibit – Dead Zone

Page 47: Chemistry on Second Life April 09

Gii – Underwater Lab

Page 48: Chemistry on Second Life April 09

Resident Chemist Program: Hinestroza Lab

Page 49: Chemistry on Second Life April 09

Rosania Lab

Page 50: Chemistry on Second Life April 09

Virtual Lab (Kurt Winkelmann)

Page 51: Chemistry on Second Life April 09

Amino World (Joan Slonczewski)

Page 52: Chemistry on Second Life April 09

Spring 09 projects: networking in Second Life and FriendFeed