Genetic and environmental conditions influencing
persistence
Hannes LuidaleppInstitute of Technology
University of TartuAugust 2011
Overview
• Persisters
• Method to follow cell division
• My results
Bacterial “lifecycle” in lab
Resistance
• Including whole population
• Genetically determined• Pumping out antibiotics• Degradation of antibiotics• Altering the target• etc
Persistence
• Part of the population is insensitive – persisters
• Medically important – chronical and persistent infections
• Genetically identical to the mother cells
• Phenotypical property
Persisters
• frequency usually 10-4-10-6 • mainly originate from stationary phase
• common to all bacterial species investigated (also to fungi and cancer cells)
Keren, et al 2004
High persistence (Hip) mutants
• persister frequency usually at least 100x higher
(also some clinical isolates of C. candida, P. aeruginosa)
• most common mutant is hipA7 (point mutations in hipA gene)
• hipA is a toxin from hipBA
antitoxin-toxin pair
Persisters - dormant cells
Balaban, et al 2004
PersistersType I persister: originate from stationary
phase
Type II persisters: originate from growth phase
Balaban, et al 2004
Physiology of persisters
• Gene expression arraysdifferent toxin/antitoxin genes, other unrelated
genes
• Mutant collection screensdifferent unrelated genes
• Over-expression studies
all toxic stuff will increase persistence
Method to follow cell division
Roostalu, et al 2008
Cell division
• LB medium
• 24h stationary phaseculture diluted into fresh media
• Two population dividing
non-dividing
Age of the culture and persistence
Growth resumption dynamics
Length of antibiotic treatment
Persister dynamics in
mutants
Growth resumption of sucB mutant
Other TCA cycle mutants
Summary
• Growth resumption depends on:– media
– age of the culture
• Level of persisters depends on growth resumption
Mutants and persistence
– Mutants show different persister formation dynamics
– Difference from wild type might be observed only in certain conditions
Medical applications
– To make cell to wake up faster
Allison et al., 2011 Kim et al., 2011
– To make cell permanently dormant
Acknowledgments
People from Tanel Tenson’s lab
Specially Arvi Jõers and Niilo Kaldalu