CybeInfrastructure Shell:A Plug-and-Play Macroscopes PlatformP632: Object Oriented Software Development
Chin Hua KongSr. System Architect / Project ManagerCyberinfrastructure for Network Science Center (CNS),Library and Information Science (LIS)
CIShell
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About CNS
What we do?
We interested in BIG DATA Mining and Filtering.
We create Open Source tools for Analysis and Visualization.
We Share Knowledge and Technique through tutorials, exhibitions, and workshops at international level.
We Connect People with different expertise for research collaboration
Microscopes Telescopes Macroscopes
3
MacroscopesDecision making in science, industry, and politics, as well as in daily life, requires that we make sense of datasets representing the structure and dynamics of complex systems
Macroscopes provide a vision of the whole, helping us synthesize the related elements and enabling us to detect patterns, trends, and outliers while granting access to myriad details
Rather than making things larger or smaller, macroscopes let us observe what is too great, slow, or complex for the human eye and mind to notice and comprehend
CIShell
• CIShell (http://cishell.org) is an open source software specification for the integration and utilization of datasets, algorithms, and tools
• It extends the Open Services Gateway Initiative (OSGi) (http://osgi.org), a standardized, modularized service platform
• CIShell provides “sockets” into which algorithms, tools, and datasets can be plugged using a wizard-driven process
CIShellSci2 Tool
NWB Tool
CIShell Wizards
Developers Users
Alg
Tool
Tool
Alg
Alg
Workflow
Workflow
Workflow
Workflow
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CIShell
TEXTrend
NWB
EpiC
Sci2
Common algorithm/tool pool Easy way to share new
algorithms Custom tools Workflow export and rerun Develop for Desktop and Web
at once
Future
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CIShell Plug-and-Play Macroscopes
CIShell
CIShell
Technology• JAVA 1.6• Open Services Gateway Initiative (OSGi) http://osgi.org• Maven – Apache build manager• Junit – Unit test framework• Jenkins – Continuous Integration Server• GitHub – CIShell core repository• SVN – CIShell powered tools’ repository• JIRA – Issue tracking system• Eclipse Juno / Indigo – Development tool
CIShell
Milestone
• Get familiar with CIShell and Sci2 development by implementing a new Sci2 plugin
• Design and implement a complete CIShell
workflow tracker that able to export the analysis workflow and rerun the 180+ plugins from the saved workflow
CIShell
CIShell-Powered Tools
Network Workbench Tool (NWB)The study of biomedical, social and behavioral science, physics, and other networks
Science of Science Tool (Sci2)For science policy makers and researchers that study science by scientific means
TexTrend ToolA trend- and text-analysis tool that supports business and governmental decision making
Epidemic Tool (EpiC)Analysis, modeling, and visualization of data streams such as diffusion patterns of the H1N1 virus over geographic space
DynaNetsThe study of evolving networks by University of Amsterdam, The Netherlands
SISOB An Observatory for Science in Society Based in Social Models by nine consortium members
CIShell
IVMOOC on Google Course Builder http://ivmooc.cns.iu.edu/
CIShell
Question?
Enabling collaboration and discovery among scientists across all disciplinesP632: Object Oriented Software Development
Chin Hua KongSr. System Architect / Project ManagerCyberinfrastructure for Network Science Center (CNS),Library and Information Science (LIS)
VIVO
Populated with detailed profiles of faculty and researchers; displaying items such as publications, teaching, service, and professional affiliations.
A powerful search functionality for locating people and information within or across institutions.
An open-source semantic web application that enables the discovery of research and scholarship across disciplines in an institution.
What is VIVO?
VIVO
VIVO data is available for reuse by web pages, applications, and other consumers both within and outside the institution through
Open Linked Data
Data stored as RDF triples using standard
ontology
Internal data sources:• Faculty Systems (FAR > IUIE)• HR System (HRMS > IUIE)• Registrar System (SIS > IUIE)• Research Data Systems (VPR>IUIE)• Events and Seminars
External data sources:• Publication warehouses-
e.g. PubMed, Web of Science• Grant databases:
e.g. NSF/ NIH• National Organizations:
AAAS, AMA, etc.
Faculty and unit administrators can then add additional information to their
profile.
VIVO
VIVO
VIVO Instances
http://vivo-vis.cns.iu.edu
http://vivo.iu.edu
http://vivo.cornell.edu
http://vivo.ufl.edu
http://vivo.scripps.edu/
http://vivo.wustl.edu/
http://vivo.psm.edu/
VIVO
Technology and Resources• JAVA 1.6• FreeMarker – Java Template Engine Library • SPARQL – the query language for semantic data (RDF)• Tomcat – Deployment server• ANT – Build framework• GitHub – VIVO repository• JIRA – Issue tracking system• Eclipse Juno / Indigo – Development tool• VIVO wiki @ https://wiki.duraspace.org/display/VIVO• VIVO developer mailing list• VIVO weekly developer call
VIVO
Milestone• Setup a VIVO instance that running full university data and get
familiar with semantic web technology
• Redesign server side model caching strategy that able to support
visualization on Large Graph Data (RDF)
• Re-implement the existing Map of Science visualization in HTML 5 + SVG
Sample map of science visualizationhttp://
vivo-vis.slis.indiana.edu/vivo/vis/map-of-science/OfficeofthePresident
VIVO
International Researcher Network (iNRN)
CIShell
Question?
THANK YOU