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University of Virginia – Center for Applied Biomechanics Yuan-Chiao Lu 4040 Lewis and Clark Drive Charlottesville, VA 22911 [email protected] a Probabilistic Finite Element Model of The Human Clavicle Statistical Shape Analysis for Development of Yuan-Chiao Lu and Costin D. Untaroiu Introduction Inherent variability exists in biological tissues in terms of geometrical shape and material properties. Statistical shape analysis has been shown to appropriately represent the geometric variability of bones, but it was limited to the applications of exterior bone surface and the human clavicle shape was investigated in only a few recent studies [1]. The main goal of this study is to enhance the knowledge regarding the shape of the human clavicle and distribution of cortical bone thickness along the shaft. In the future the statistical distributions of cortical bone thickness and material properties could be used in the development of a probabilistic finite element model of human clavicle. Methods The geometries of 10 clavicles were reconstructed from computerized tomography (CT) scans. The exterior and interior boundaries of cortical bone were obtained using Mimics 13 with different point densities for each clavicle. Procedure Statistical Shape Analysis Results Reference [1] Daruwalla, Z.J., Courtis, P., Fitzpatrick, C., Fitzpatrick, D., Mullett, H. (2010). An Application of Principal Component Analysis to the Clavicle and Clavicle Fixation Devices. J Orthop Surg Res, 5 (21). [2] Dalal, P., Munsell, B.C., Wang, S., Tang, J., Oliver, K., Ninomiya, H., Zhou, X., Fujita, H. (2007). A Fast 3D Correspondence Method for Statistical Shape Modeling. IEEE Conf. on Computer Vision and Pattern Recognition, 1-8. [3] Van de Giessen, M., Smitsman, N., Strackee, S.D., Van Vliet, L.J., Grimbergen, K.A., Streekstra, G.J., Vos, F.M. (2009). A Statistical Description of the Articulating Ulna Surface for Prosthesis Design. Proc. IEEE Conf. Biom. Imag., 678-681. [4] Dryden, I.L., Mardia, K.V. (1998). Statistical Shape Analysis. John Wiley & Sons Ltd, West Sussex, England. [5] Davies, R.H. (2002). Learning Shape: Optimal Models for Analysing NaturalVariability. PhD Dissertation, University of Manchester. [6] Untaroiu, C.D., Duprey, S., Kerrigan, J., Li, Z., Bose, D., Crandall, J.R. (2009). Experimental and Computational Investigation of Human Clavicle Response inAnterior-Posterior Bending Loading. Bio. Sci. Instr., 45: 6-11. [7] Petitjean, A., Trosseille, X., Petit, P., Irwin, A., Hassan, J., Praxl, N. (2009). Injury Risk Curves for the WorldSID 50th Male Dummy. Stapp Car Crash Journal, 53: 443-476. Discussion Future Work A statistical shape approach will help to better understand variability observed in biomechanical and injury response of clavicle under bending and axial loading [6]. The force-displacement test corridor obtained from [6] is expected to be included in the corresponding corridor from finite element shape model simulation. (a) 1 st Mode (b) 2 nd Mode (c) 3 rd Mode Figure 2. Modes of variation of the exterior shape of clavicle cortical bone (axis unit: mm; σ: ). Figure 3. Modes of variation of the interior shape of clavicle cortical bone (axis unit: mm; σ: ). Figure 1. An illustration of constructing the template landmarks U L from point clouds [2]. The shape variability of clavicle cortical bone was investigated in this study. The length of the clavicle is shown to be the most significant shape mode for both exterior and interior bone surfaces. The first five modes would be sufficient to describe the overall shape variation, where the first five modes account for approximately 84% of anatomical variation. The noise of CT scanning and random point sampling influences the higher modes. When comparing the exterior with interior cortical bone shapes, the compactness evaluation shows that the interior shape models are more compact than the exterior shape models. Fig. 4 presents the percentages of variation of the exterior and interior surfaces of clavicle cortical bone. In both cases, the first modes account for 32-35% of variance while the 2 nd , 3 rd and 4 th modes account for 7-27% of anatomical variation. Correspondence A dense correspondence map between each pair of surfaces was established using coordinates as well as surface normals [3]. The correspondence between a point a i on surface A and a point b ai on surface B was defined by the minimum Euclidean distance in a six-dimensional space: with and ,p i and p j the point coordinates and n i ,n j the surface normals. The weight factor λ was chosen to be 1. 11,360 corresponding points are on all cortical bone surfaces for each shape type (exterior and interior). Principal Component Analysis (PCA) PCA consists of computing the covariance matrix D of landmarks and determining the eigenvalues and eigenvectors [4]. The eigenvectors describe the directions of variation, called “modes of variation”. The associated eigenvalue denotes the variance in the corresponding direction. , where are individual vectors for sample i ; Shape space: , , and for mode j CT Images Registration Template Landmarks (1 Clavicle) Correspondence Exterior Interior Target Landmarks (9 Clavicles) Principal Component Analysis One shape instance was selected as the template U, then the template landmarks U L were developed using the equal-size cubic grid method (Fig. 1) [2]. The 3D space was uniformly divided into equal-size cubic grid cells. In each cell, the point closest to the center of the cell was picked from original point cloud as a landmark in U L . Registration Align the clavicle models using translation, rotation and scaling transformations. Remove the location and scaling differences by moving their centers of mass to the origin and normalizing their sizes to be the same. Remove the rotations between samples by using the STL Registration function in Mimics 13. Evaluation Criteria (1) Percentage of variability-the contribution of each mode to the overall variation [4]. (2) Compactness-the ability to use a minimal set of modes [5]. where M: modes, : eigenvalues. The shape models could be further combined with property distributions of cortical bone to develop probabilistic finite element models of clavicle. Figure 6. Schematic of a) physical test setup used to apply bending loading to the clavicle specimens and of b) finite element setup and clavicle model used in FE simulation [6]. The shape models could also be applied for the development of prosthetics [1]. (d) 4 th Mode (a) 1 st Mode (b) 2 nd Mode (c) 3 rd Mode (d) 4 th Mode Figure 4. Percentage of variability of modes Figure 5. The compactness evaluation of the statistical shape model of the human clavicle. The length of the clavicle is shown to be the most significant shape mode (Fig. 2a and 3a) for both exterior and interior cortical bone surfaces. The curvature variation and the size of the medial end of the clavicle shapes are described by the 2 nd mode (Fig. 2b and 3b). The size of the lateral end of clavicles is described by the 3 rd and 4 th modes (Fig. 2c and 3c). Width variation of clavicles can be found in the first four modes (Fig. 2 and 3). The compactness evaluation shows that the exterior part exhibits higher variability in each mode than the interior part while in both cases the first five modes would be essential to describe the overall shape variation (Fig. 5). Medial Side Lateral Side The statistical shape models could better represent 5%, 50% and 95% human finite models used in the automotive research compared to those obtained by scaling techniques [7]. Shape Models of Clavicles

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Page 1: Yuan-Chiao Lu and Costin D. Untaroiu - IBRCibrc.osu.edu/wp-content/uploads/2013/12/Lu_Poster_2011.pdfUniversity of Virginia – Center for Applied Biomechanics Yuan-Chiao Lu4040 Lewis

University of Virginia – Center for Applied BiomechanicsYuan-Chiao Lu4040 Lewis and Clark DriveCharlottesville, VA [email protected]

a Probabilistic Finite Element Model of The Human ClavicleStatistical Shape Analysis for Development of

Yuan-Chiao Lu and Costin D. Untaroiu

IntroductionInherent variability exists in biological tissues interms of geometrical shape and materialproperties. Statistical shape analysis has beenshown to appropriately represent the geometricvariability of bones, but it was limited to theapplications of exterior bone surface and thehuman clavicle shape was investigated in only afew recent studies [1]. The main goal of this studyis to enhance the knowledge regarding the shapeof the human clavicle and distribution of corticalbone thickness along the shaft. In the future thestatistical distributions of cortical bone thicknessand material properties could be used in thedevelopment of a probabilistic finite elementmodel of human clavicle.

Methods• The geometries of 10 clavicles were reconstructed

from computerized tomography (CT) scans.• The exterior and interior boundaries of cortical

bone were obtained using Mimics 13 with differentpoint densities for each clavicle.

Procedure

Statistical Shape Analysis

Results

Reference[1] Daruwalla, Z.J., Courtis, P., Fitzpatrick, C., Fitzpatrick, D., Mullett, H.

(2010). An Application of Principal Component Analysis to the Clavicleand Clavicle Fixation Devices. J Orthop Surg Res, 5 (21).

[2] Dalal, P., Munsell, B.C., Wang, S., Tang, J., Oliver, K., Ninomiya, H., Zhou,X., Fujita, H. (2007). A Fast 3D Correspondence Method for StatisticalShape Modeling. IEEE Conf. on Computer Vision and PatternRecognition, 1-8.

[3] Van de Giessen, M., Smitsman, N., Strackee, S.D., Van Vliet, L.J.,Grimbergen, K.A., Streekstra, G.J., Vos, F.M. (2009). A StatisticalDescription of the Articulating Ulna Surface for Prosthesis Design. Proc.IEEE Conf. Biom. Imag., 678-681.

[4] Dryden, I.L., Mardia, K.V. (1998). Statistical Shape Analysis. John Wiley &Sons Ltd, West Sussex, England.

[5] Davies, R.H. (2002). Learning Shape: Optimal Models for AnalysingNatural Variability. PhD Dissertation, University of Manchester.

[6] Untaroiu, C.D., Duprey, S., Kerrigan, J., Li, Z., Bose, D., Crandall, J.R.(2009). Experimental and Computational Investigation of Human ClavicleResponse in Anterior-Posterior Bending Loading. Bio. Sci. Instr., 45: 6-11.

[7] Petitjean, A., Trosseille, X., Petit, P., Irwin, A., Hassan, J., Praxl, N. (2009).Injury Risk Curves for the WorldSID 50th Male Dummy. Stapp Car CrashJournal, 53: 443-476.

Discussion

Future Work• A statistical shape approach will help to better

understand variability observed in biomechanicaland injury response of clavicle under bending andaxial loading [6]. The force-displacement testcorridor obtained from [6] is expected to beincluded in the corresponding corridor from finiteelement shape model simulation.

(a) 1st Mode (b) 2nd Mode (c) 3rd ModeFigure 2. Modes of variation of the exterior shape of clavicle cortical bone (axis unit: mm; σ: ).

Figure 3. Modes of variation of the interior shape of clavicle cortical bone (axis unit: mm; σ: ).

Figure 1. An illustration of constructing the template landmarks UL from point clouds [2].

• The shape variability of clavicle cortical bone wasinvestigated in this study.

• The length of the clavicle is shown to be the mostsignificant shape mode for both exterior and interiorbone surfaces.

• The first five modes would be sufficient to describethe overall shape variation, where the first fivemodes account for approximately 84% of anatomicalvariation.

• The noise of CT scanning and random pointsampling influences the higher modes.

• When comparing the exterior with interior corticalbone shapes, the compactness evaluation shows thatthe interior shape models are more compact than theexterior shape models.

• Fig. 4 presents the percentages ofvariation of the exterior and interiorsurfaces of clavicle cortical bone.

• In both cases, the first modes accountfor 32-35% of variance while the 2nd,3rd and 4th modes account for 7-27% ofanatomical variation.

• Correspondence A dense correspondence map between each pair of

surfaces was established using coordinates as well assurface normals [3].

The correspondence between a point ai on surface Aand a point bai on surface B was defined by theminimum Euclidean distance in a six-dimensionalspace:

with and , pi and pj the point

coordinates and ni, nj the surface normals. Theweight factor λ was chosen to be 1.

11,360 corresponding points are on all cortical bone surfaces for each shape type (exterior and interior).

• Principal Component Analysis (PCA) PCA consists of computing the covariance matrix D of

landmarks and determining the eigenvalues andeigenvectors [4].

The eigenvectors describe the directions of variation, called“modes of variation”. The associated eigenvalue denotes thevariance in the corresponding direction.

, where are individual vectors for sample i

; Shape space: , , and for mode j

CT ImagesRegistration

Template Landmarks(1 Clavicle)

CorrespondenceExterior

Interior Target Landmarks(9 Clavicles)

Principal ComponentAnalysis

• One shape instance was selected as the template U,then the template landmarks UL were developedusing the equal-size cubic grid method (Fig. 1) [2]. The 3D space was uniformly

divided into equal-size cubicgrid cells.

In each cell, the point closestto the center of the cell waspicked from original pointcloud as a landmark in UL.

• Registration Align the clavicle models using translation, rotation

and scaling transformations. Remove the location and scaling differences by

moving their centers of mass to the origin andnormalizing their sizes to be the same.

Remove the rotations between samples by using theSTL Registration function in Mimics 13.

• Evaluation Criteria (1) Percentage of variability-the contribution of each mode to

the overall variation [4]. (2) Compactness-the ability to use a minimal set of modes [5].

where M: modes, : eigenvalues.

• The shape models could be further combined withproperty distributions of cortical bone to developprobabilistic finite element models of clavicle.

Figure 6. Schematic of a) physical test setup used to apply bending loading to the claviclespecimens and of b) finite element setup and clavicle model used in FE simulation [6].

• The shape models could also be applied for thedevelopment of prosthetics [1].

(d) 4th Mode

(a) 1st Mode (b) 2nd Mode (c) 3rd Mode (d) 4th Mode

Figure 4. Percentage of variability of modes Figure 5. The compactness evaluation of thestatistical shape model of the human clavicle.

• The length of the clavicle isshown to be the mostsignificant shape mode (Fig.2a and 3a) for both exteriorand interior cortical bonesurfaces.

• The curvature variation andthe size of the medial end ofthe clavicle shapes aredescribed by the 2nd mode(Fig. 2b and 3b).

• The size of the lateral end ofclavicles is described by the3rd and 4th modes (Fig. 2c and3c).

• Width variation of claviclescan be found in the first fourmodes (Fig. 2 and 3).

• The compactness evaluation shows thatthe exterior part exhibits highervariability in each mode than the interiorpart while in both cases the first fivemodes would be essential to describe theoverall shape variation (Fig. 5).

Medial Side

Lateral Side

• The statistical shape models could better represent5%, 50% and 95% human finite models used in theautomotive research compared to those obtained byscaling techniques [7].

Shape Models of Clavicles