WP 6 Database improvement and enrichment Leading partner : BAZ Germany, E. Maul

Short to long term objective: European Vitis databasecomprising

Genres081 dataGrapeGen06 data

Establishment of a procedure for a continuous follow up even after termination of the project

Council Regulation (EC) N°870/2004 AGRI GEN RES #008

GrapeGen006

- ECPGR European Central Crop Database ECPGR Vitis Database: http://www.ecpgr.cgiar.org/Databases/Crops/Vitis.htm

- Adaptation of homepage to Prunus Database Recommendation of the ECPGR Fruit Network Coordinating Group (March 2006)

- Adoption of the EURISCO-format

- Creation of a partner specific access with option for on-line working (deletion, additions, changes of records)

- Download options

European Vitis Database: modifications

Passport descriptorsCharacterisation and evaluation descriptorsSSR-marker descriptors----------------------------------------GENRES #081----------------------------------------AGRI RES GEN #008

http://www.bioversityinternational.org/networks/ecpgr/links/ecpgr_search.asp

The European Prunus database

The European Prunus database

The European Prunus database

Partner dataUpdating of • Adresses• Collection specifications• Scientists involved• Expertise

Passport data     Replacement of the former format by the Multicrop Passport Data

Descriptor Format of the EURISCO Database     Update of the Genres081 partners collection’s passport data,

addition of further collection’s passport data

European Vitis Database: 1st year activities

Partners of Genres#081: verification of adresses

Partners of Genres#081: verification of information

1 2 3 4 5 6 7TRUENESS_TO_TYPE INSTCODE ACCENUMB COLLNUMB COLLCODE GENUS SPECIES SPAUTHOR

yes DEU098 DEU98-1993-296 Vitis vinifera L.not checked DEU098 DEU98-2001-075 Vitis vinifera L.not checked DEU098 DEU98-2001-076 Vitis vinifera L.not checked DEU098 DEU98-2001-077 Vitis vinifera L.not checked DEU098 DEU98-2001-078 Vitis vinifera L.not checked DEU098 DEU98-2001-079 Vitis vinifera L.

yes DEU098 DEU98-1993-297 Vitis vinifera L.not checked DEU098 DEU98-2001-080 Vitis vinifera L.not checked DEU098 DEU98-2001-121 Vitis vinifera L.

 FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS

Passport data

0 - TRUENESS_TO_TYPEyes, no, not checked

1 - INSTCODE (Institute code)Example: GRC051 

2 - ACCENUMB (Accession number)Example: DEU098-1993-296 

3 - COLLNUMB 

4 - COLLCODE 

5 - GENUS. Example : Vitis 

6 - SPECIESExample : vinifera 

7 - SPAUTHORExample: L.

8 9 10 11 12SUBTAXA SUBTAUTHOR CROPNAME ACCENAME ACQDATE

var. wine grape ARBST BLAU 1993var. OESTERREICHISCH WEISS 2001var. wine grape VELTLINER BRAUN 2001var. wine grape VELTLINER GRAU 2001var. wine grape VELTLINER ROT 2001var. wine grape TROYEN 2001var. wine grape ARBST BLAU 1993var. wine grape;table grape MADELEINE VIOLET 2001var. FURNER HOTTLINGER 2001

 FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS

Passport data

8 - SUBTAXAExample: ssp. sylvestris 

9 - SUBAUTHOR 

10 - CROPNAME (Common crop name – utilization)Wine grape, table grape, raisin grape, rootstock (ornamental grape, wild grape). If multi-use exists, different uses have to be separated by semicolon without spaces.Example: wine grape;table grape 

11 - ACCENAME (Accession name)Designation of the accessionExample: Ruländer 

12 - ACQDATE (Acquisition date)Date on which the accession entered the collection as YYYYMMDDExample: 1968Example: 20020620

 FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS

Passport data

13 14 15 16 17 18 19 20 21ORIGCTY COLLSITE LATITUDE LONGITUDE ELEVATION COLLDATE BREDCODE SAMPSTAT ANCEST

300 PINOT NOIR CLONE300300300300300300 PINOT NOIR CLONE300300

13 - ORIGCTY 

14 - COLLSITE

15  - LATITUDE 

16 - LONGITUDE 

17 - ELEVATION 

18 - COLLDATE 

19 - BREDCODE (Breeding institute code)FAO Institute Code of the institute that has bred the materialExample: AUT024

20 - SAMPSTAT (Biological status of accession)Example: 110) Natural = Vitis vinifera ssp. sylvestrisExample: 300) Traditional cultivar/landrace = Gouais blancExample: 412) Hybrid = Geilweilerhof 3-28-46Example: 500) Advanced/improved cultivar = Rathay

21 - ANCEST (Ancestral data) Example: Pinot x HeunischExample: Pinot noir open pollinationExample: Pinot noir self pollination

 FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS

Passport data

22 23 24 25 26 27 28 29 30 31COLLSRC DONORCODE DONORNUMB OTHERNUMB DUPLSITE STORGAE REMARKS COLLDESCR BREDDESCR DONORDESCR

40 2040 2040 2040 2040 2040 2040 2040 2040 20

22 - COLLSCR (Collecting/acquisition source) 40) Institute, Experimental station, Research organization, Genebank (most cases)

23 - DONORCODE (Donor institute code)

24 - DONORNUMB (Donor accession number)

25 - OTHERNUMB (Other identification (numbers) associated with the accession)

26 - DUPLSITE (Location of safety duplicates) 

27 - STORAGE (Type of germplasm storage) 20) Field collection (most cases)

28 - REMARKS (Remarks) 

29 - COLLDESCR (Decoded collecting institute)

30 - BREDDESRC (Decoded breeding institute)

31 - DONORDESCR (Decoded donor institute)

 FAO / IPGRI MULTI-CROP PASSPORT DESCRIPTORS

Passport data

32 33 A B C DDUPLDESCR ACCEURL VARIETY NAME BERRY COLOR COUNTRY OF ORIGIN OF THE VARIETY Bredyear

PINOT NOIR N FRAOESTERREICHISCH WEISS B AUT

VELTLINER BRAUN B HUNVELTLINER GRAU G AUTVELTLINER ROT RS ITA

TROYEN N FRAPINOT NOIR N FRA

MADELEINE VIOLET N FRAFURNER HOTTLINGER RG ITA

32 - DUPLDESCR (Decoded safety duplication location) 

33 - ACCEURL (Accession URL) 

Vitis specific descriptors:

A. Variety NameName of the variety, after it has been identified with certainty Example: Prokupaz

B. Berry colorColor of the berry skin: green, green-grey, green-rose, green-red, green-black, grey, grey-rose, rose, red, red-violet, black, black-red, black-grey Example: green-rose 

C. Country of origin of the varietyCode of the country in which the variety originatedExample: ARM 

D. BREDYEAR (Year of crossing)Year in which the variety was created as YYYYExample: 1926

Passport data

The following data files are provided on CD:

• Partner specific passport data from Genres#081 (extracted from the European Vitis database) in the MCPD-format. „vitis_id“ and „partner#accession_number“ have to be maintained and not to be changed.

• For non Genres#081 participants an empty data file in the MCPD-format.

• Example file from DEU098.

• FAO WIEWS Institute Code-list. All partners are requested to verify their adress, phone and fax-numbers and e-mail adress.

• Multicrop passport descriptors

• Passport data and descriptor recording rules for the compilation of the European Vitis Database (Appendix II of the ECPGR Vitis working group meeting, Palic June 2003)

Characterization and evaluation data

Characterization and evaluation data

Characterization and evaluation data

Characterization and evaluation data

Deadline:

Sending of partner specific information andpassport data in the MCPD Format

Before June 30, 2007

European Vitis Database: 1st year activities

WP 6 Database improvement and enrichment Leading partner : BAZ Germany, E. Maul

Characterization and evaluation data

Characterization / evaluation search criteria:

Search

Select descriptor condition value

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Characterization / evaluation search criteria:

Search

Select descriptor condition value

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1=closed

3=half open

5=fully open

Grapevine field collection of CZE041 Research Station for ViticulturePraha 6 – RuzyneCZ - 26718 Karlstein

Multi-crop passport descriptor data, primary and secondary descriptor data, photos

Search criteria:•field collection

sorted by: accession number accession name

berry coloryear of plantationtrueness-to-typeVitis speciescountry of originusevirus infection

•accession number•accession name

Multi-crop passport descriptor data of CZE041sorted by accession number

etc.

ACCESSION NUMBER ACCESSION NAME

BERRY COLOR

YEAR OF PLANTATI

ONTRUENESS

TO TYPEVITIS

SPECIES COUNTRY OF ORIGIN USE

DESC

DATA

PHOTOS

CZE041-1998-002 ABOURIOU NOIR N 1999 yes Vitis vinifera France wine grape x xCZE041-1998-003 NADHERNA DE CURTILE B 1999 yes Vitis vinifera France table grape x xCZE041-1998-004 MUSKAT AGAPANTHE N 1999 yes Vitis vinifera France table grape x xCZE041-1998-005 HEDVABNE ZELENE B 1999 yes Vitis vinifera Italy wine grape x xCZE041-1998-006 AFUS ALI B 1999 yes Vitis vinifera Lebanon table grape x xCZE041-1998-007 ALBALONGA B 1999 yes Vitis vinifera Germany wine grape xCZE041-1998-008 ALIBERNET N 1999 yes Vitis vinifera Ukraine wine grape x xCZE041-1998-009 ROYAL N 1999 yes Vitis vinifera France table grape x xCZE041-1998-010 ALVARNA RS 1999 yes Vitis vinifera Moldova wine grape xCZE041-1998-011 ANDRE N 1999 no Vitis vinifera Czech Republic wine grape x xCZE041-1998-012 ANNA MARIA B 1999 yes Vitis vinifera Italy wine grape x xCZE041-1998-013 ANTIGONA RG 1999 yes Vitis vinifera Serbia and Montenegro wine grape x xCZE041-1998-014 ARMAS B 1999 yes Vitis vinifera Romania wine grape xCZE041-1998-015 RYZLINK AROMATICKY B 1999 yes Vitis vinifera France wine grape x xCZE041-1998-016 ATTILA B 1999 yes Vitis vinifera Hungary wine grape xCZE041-1998-017 AUGUSTA LUISE B 1999 no Vitis vinifera Germany table grape x xCZE041-1998-018 AURELIUS B 1999 yes Vitis vinifera Czech Republic wine grape xCZE041-1998-019 AUXERROIS BLANC B 1999 yes Vitis vinifera Germany wine grape x xCZE041-1998-020 BACCUS B 1999 yes Vitis vinifera Germany wine grape x xCZE041-1998-021 BANATSKI MUSCAT B 1999 yes Vitis vinifera Romania table grape xCZE041-1998-022 BEAUTY SEEDLES B 1999 yes Vitis vinifera USA table grape x

new accessions can be added

Primary and secondary descriptor data of the accession Ryzlink Rynsky

Modifications, additions can be carried out

OIV Code N° descriptor notation

OIV 001 Young shoot: shape of the tip 7=openedOIV 003 Young shoot: intensity of anthocyanin coloration on

prostrate hairs of the shoot tip1=none or very low

OIV 004 Young shoot: density of prostrate hairs of the tip 5=mediumOIV 006 Shoot: attitude (before tying) 7=semi droopingOIV 007 Shoot: color of dorsal side of internodes 1=greenOIV 008 Shoot: color of the ventral side of internodes 2=green OIV 015 - 1 Shoot: distribution of anthocyanin coloration on the

bud scales2=basal

OIV 015 - 2 Shoot: intensity of anthocyanin coloration on the bud scales

3=weak

OIV 016 Shoot: number of consecutive tendrils 1=2 or lessOIV 051 Young leaf: color of the upper side (leaf 4) 3=bronzeOIV 054 Young leaf: density of erect hairs between main

veins on the lower side of blade (4th leaf )

7=high

OIV 067 Mature leaf: shape of blade 2=wedge-shapedOIV 068 Mature leaf: number of lobes 3=fiveOIV 070 Mature leaf: area of anthocyanin coloration of main

veins on upper side of blade3=up to the 1st bifurcation

OIV 074 Mature leaf: profile 1=flatOIV 075 Mature leaf: blistering of upper side of blade 1=absent or very weakOIV 076 Mature leaf: shape of teeth 5=mixture between both sides straight (note 2)

and both sides convex (note 3)OIV 079 Mature leaf: degree of opening / overlapping of

petiole sinus4=slightly overlapped

OIV 080 Mature leaf: shape of base of petiole sinus 3=V-shapedOIV 081 Mature leaf: particularities of petiole sinus 1=noneOIV 081 - 1 Mature leaf: presence of teeth in the petiole sinus 1=noneOIV 081 - 2 Mature leaf: petiole sinus base limited by vein 1=not limited

new descriptors can be added

Designation of germplasm accessions to AEGIS

Responsibilities: • Ensure the long-term conservation according to agreed quality standards• Provide for safety duplication in another genbank, preferably in a different country• Facilitate access and availability• Documentation of passport, characterization and evaluation data• Keep the aboce mentioned information updated in the ECPGR Vitis database