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WFCC
Global Catalogue of Microorganisms (GCM)
Introduction
World Data Center of Microorganisms(WDCM)
Oct. 2012
1 Rectangle graphics Outlines
Part 1: GCM: mission, functional architecture and
progress
Part 2: Minimum and Recommended Data Sets
Part 3: GCM for the data users
Part 4: GCM for the culture collections
WFCC Global Catalogue of Microorganisms (GCM)
For culture collections: a reliable and user-
friendly system to help culture collections to
manage, disseminate and share the information
related to their holdings.
For scientific and industrial data users: supports
them by integrated database and tools with a
simple and flexible user interface.
An initiative launched by the World Data Center for Micro-organisms
Common Data standards
Regional network
Collections
Collections
Training
DBMS
Microbial Resources Data Warehouse
Literature
Sequence
Patents ISO
CCINFO
WFCC Global Catalogue of
Microorganisms (GCM)
ABC datamining
Microbial Cloud
ABC
Research community: SNS/Video conference
Contributions and benefits of CCs
WFCC Global
Catalogue
Contributions Benefits
Promote visibility
Provide online catalogue for CC
Provide data management services for small CC
Provide platform for data and resource exchanges
Benefits from industrial application of strains
Training
Catalogue information in XML, Excel, Mysql file.
Further cooperate with WFCC WDCM for industrial application of microbial resources
GCM Statistics
Counts
Strains 233,789
Species 36,623
Culture Collections 36
Countries 19
Homepage： gcm.wfcc.info
1 Rectangle graphics Overview
Part 1: GCM: mission, functional
architecture and progress
Part 2: Minimum and Recommended Data Sets
Part 2: GCM for the data users
Part 3: GCM for the culture collections
WDCM MDS is composed of 15 fields. The input files could be either EXCEL or XML.
1 Rectangle graphics Overview
Part 1: GCM: mission, functional
architecture and progress
Part 2: Minimum and Recommended Data Sets
Part 3: GCM for the data users
Part 4: GCM for the culture collections
eOffice Solution Planning
Strain Page Species Page
Search options
Filter
Display format
strain number/name
Search literature
Advanced Search
Homology search
Browse taxonomy tree By Culture collection
By isolation sources
By strain number/name
On Google map
Organism type
Location
Temperature
Further analysis
Search GCM by Strain Name and Strain Number
Search results
Filtering search result and customizing the output format
Formats to display the search results
Link to Species page
Display the search result in a list of culture collections
Display the table of isolation sources
Display the Geographic origin of strains
Advanced search interface
Advanced search interface
Searching results of sequence similarity
Searching strains by publications and patents
Searching results by publications and patents
Link out to CCINFO database
List of culture collections in the search result
Catalogue information from collections
Link back to original site
Publications explored by Analyzer of Bio-resources Citations(ABC)
Exploring information about a strain
Sequences explored by ABC
Detailed information of Strains
Patents explored by ABC
Choose sequences to execute bioinformatics analysis
Exploring information about a species
Exploring information about a species
Publications related to the strains
Exploring information about a species
Publications related to this species
Species information
Patents related with this species explored by ABC
Adding your own comments
What users can do for the strain information?
Bioinformatics Analysis
Exchange of strains with collections
Communicate with others on this platform
Choose sequences to execute bioinformatics analysis
Multiple Alignment of selected sequences
Order strains online
Users can add comments on species page
1 Rectangle graphics Overview
Part 1: GCM: mission, functional
architecture and progress
Part 2: Minimum and Recommended Data Sets
Part 3: GCM for the data users
Part 4: GCM for the culture collections
Workflow
Register in CCINFO
Join in GCM Publish online
Catalogue
Provide ABC and Name
check results
Provide the DBMS
WDCM Number and
Acronym
Strain Number and Name
DBMS for culture collections
Provides:
In-house data management
Homepage
Online Catalogue
Choose data items according to your own catalogue items
Import your data in EXCEL file
Export an EXCEL template for data management
Managing your data in EXCEL file
Submit your data through EXCEL template directly
Manage and add new accounts
Director of WDCM
Dr. Juncai MA,
GCM team supports
Dr. Linhuan WU
ABC team supports
Ms. Qinlan SUN
Thanks for your supports,
for any of your suggestions and comments please contact:
