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REVISION HISTORY

Date Version Change Request #, if any Description of Change Implemented By

02/15/19 1.0 Initial Draft Andy Greenleaf and the NGC Team3/12/19 1.01 Updated DRAFT for initial submission Andy Greenleaf and the NGC Team

6/12/19 2.0 Gov. Feedback on Draft

Implementing Action Plan to reflect specific details the Government wants in the plan.

6/27/19 2.1 Final updates Reviewed and updated all links and data Andy Greenleaf and the NGC Team

TABLE OF CONTENTS1. Executive Summary.....................................................................................32. Systems and Subsystems Information..........................................................7

2.1 System Information......................................................................................................................7

2.2 Project Staff / Stakeholders..........................................................................................................7

3. Data and Database Assets...........................................................................83.1 Data Schema.................................................................................................................................8

3.2 Data Dictionary.............................................................................................................................9

3.3 Data Types..................................................................................................................................27

3.4 Data Sources...............................................................................................................................28

3.5 Data Management Tools / Scripts..............................................................................................28

3.6 Data Load and Integration..........................................................................................................28

4. Software Assets.........................................................................................294.1 Software Development Tools.....................................................................................................29

4.2 Open Source Data Generation Tools..........................................................................................30

4.3 Data Analysis and Visualization Tools......................................................................................30

4.4 External Tools.............................................................................................................................30

4.5 Application Programming Interfaces (APIs)..............................................................................30

5. Knowledge Assets......................................................................................315.1 Publications, Presentations, and Contributions to the Community............................................31

5.2 Training Materials......................................................................................................................31

5.3 System Documentation...............................................................................................................31

6. Government Furnished Equipment (GFE).....................................................32

1. EXECUTIVE SUMMARYThe Northrop Grumman Corporation (NGC) team provided the technical and analytical support needed to manage the highly complex architecture

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Interruptions or degradation of service during transition will severely impact NIH’s ability to carry out mission objectives.

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and services supporting scientific community needs for viral and influenza research. The BRC program relies heavily on an intricate technical infrastructure, coordinated scientific involvement, and technical expertise that the NGC team provided for almost 20 years. Transitioning scientific support is a straightforward task; however, transitioning the technical infrastructure without disruption or risk requires technical expertise of underlying technologies and understanding of the environment. NGC has a comprehensive plan, well-documented resources and processes, and the critical incumbent experience needed to manage a smooth transition.

TRANSITION APPROACHNGC tailored this transition approach with customer feedback to capitalize on our knowledge and experience gained over the breadth of the contracts in building and maintaining the ViPR and IRD systems. Our role in transition out of this contract is focused on delivering quality and stability during close-out and through transition of new staff.

TRANSITION PERSONNELName Role ResponsibilitiesMorgan Crafts, MBA Program Manager Overall BRC program supervisionSam Zaremba, Ph.D. Project Manager Project management for BRCChris Larsen, Ph.D. Scientific Coordinator Coordination of scientific leadership and knowledgeJason Lucas Configuration Manager Hardware asset transitionVince Desborough Data Architect Database asset transitionKelly Hailegiorghis Data Management Analyst Database assetsXiaomei Li, Ph.D. Technical Lead Software asset transitionBryan Walters System Administration GFE equipment dispositionAndy Greenleaf, MS, PMP Transition Coordinator Coordinate transition activities and reporting

TRANSITION PLAN – PHASED APPROACHNGC organizes transition activities in a prioritized three phase approach to enable our team to maintain operations while introducing new staff carefully selected to expand and improve future program support.PHASE 1: Planning for Transition. Define clear, achievable tasks

TEAM RESPONSIBILITYSTATUS

1. Build transition team Management Done2. Document all Existing Resources Transition, Project Team Done: on web site3. Submit Final Transition Plan (DRAFT) Management, Contracts Done4. Plan Staff Reassignments Management, Contracts, HR In Progress5. Plan Replacement of Subcontractors with NEW team members Management, Contracts, Transition In Progress6. Submit Final Transition Plan (FINAL) Management, Contracts In Progress

PHASE 2: Execute Transition Plan. Tasks as directed by COR TEAM RESPONSIBILITY1. Finalize transition activities Management, Contracts, Transition In Progress2. Hold Transition Meetings to prepare team for new award Management, Contracts, Awardee In Progress3. Package and deliver data, software, and documentation Contracts, Project Team Done: on web site4. Continue supporting O&M of systems Project Team On-Going5. Execute Staff Reassignments Management, Contracts, HR TBD: at POP End

PHASE 3: Transition Close-Out. Begin new award uninterrupted TEAM RESPONSIBILITY1. Done Transition with final knowledge transfer Contracts, Project Team TBD: at POP End2. Return All Government Owned Property Contracts TBD: at POP End3. Gain Final Acceptance and Gov’t sign-off Contracts, Management TBD: at POP End

TRANSITION ACTIVITIES – CHECKLIST BASED ON GOVERNMENT FEEDBACK:Actions Notes

Update / Post BRC Final Transition Plan and the

Available on the web site with the July release at: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=Mission

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The ViPR and IRD systems are well documented to minimize downtime during routine maintenance, personnel changes, and transition.

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BRC Compendium

Data / DatabaseAvailable on the web site and in the BRC Compendium

Data Schemas: ViPR: https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprInfo&subtype=Downloadhttps://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=Document&param=vipr-data-standards.htmlIRD: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=Downloadhttps://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=Document&param=ird-data-standards.html

Data Types: ViPR: https://www.viprbrc.org/brc/dataSummary.spg?decorator=viprIRD: https://www.fludb.org/brc/dataSummary.spg?decorator=influenza

Data Sources: ViPR: https://www.viprbrc.org/brc/dataSources.spg?decorator=vipr IRD: https://www.fludb.org/brc/dataSources.spg?decorator=influenza

Capabilities and Functionalities

Documented in PDP & Release Notes and in: https://www.viprbrc.org/brcDocs/documents/ViPR_BROCHURE.pdf

Software Tools & Code Available on web sites and documented in PDP

Documentation: User & Administrator Available on web sites and in Release notes

On-line help IRD: https://www.fludb.org/brcDocs/IRDHelp/IRDhelpfile.htmViPR: https://www.viprbrc.org/brcDocs/ViPRHelp/ViPRhelpfile.htm

Tutorial / Training materials

IRD: https://www.fludb.org/brc/influenzaTutorials.spg?decorator=influenzaViPR: https://www.viprbrc.org/brc/viprTutorials.spg?decorator=vipr

SOPs IRD: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=ProtocolsViPR: https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprInfo&subtype=Protocols

Accounts For security purposes, all accounts and registration information will be transferred at the Government’s direction, if needed, at the POP End□ Social Media accounts and Source Library□ Scientific software licenses□ Transfer of cloud accounts, domain names□ User distribution lists, community listservs (google/yahoo groups)□ User Workbenches

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Table 1: Transition ScheduleNIAID BRC TRANSITION & CLOSE-OUT PLAN CLOSE-OUT ACTIVITY Dur Start End Status Responsibility Notes

TRANSITION PLAN - DRAFT and FINAL Develop, update, deliver the Transition Plan Prepare DRAFT transition plan based on proposal 30 2/10 3/12 Done Andy Greenleaf Developed from 2013 proposal and in conjunction with BRC team Deliver DRAFT transition plan to NIAID 1 3/13 3/14 Done NGC Contracts Delivered to Brian Madgey on 3/14 Receipt from NIAND on acceptance of DRAFT 0 3/14 3/14 Done NGC Contracts Received by Brian Madgey on 3/14 Receive feedback from NIAID 76 3/14 5/29 Done NGC Contracts Supposed to be received in 30 days; received from Brian Madgey on 5/29 Update transition plan to create the FINAL 30 5/29 6/28 Done Andy Greenleaf Delivered and received by Brian Madgey on 6/28 Deliver FINAL transition plan to NIAID 30 5/29 6/28 Done NGC Contracts Delivered and received by Brian Madgey on 6/28 Receipt from NIAND on acceptance of FINAL 30 5/29 6/28 Done NGC Contracts Delivered and received by Brian Madgey on 6/28 Update BRC Transition Plan with internal feedback 39 8/5 9/13 In Progress Andy GreenleafBRC DATA - Virus and Influenza Identify portable storage device (PSD) for all data 5 8/8 8/13 In Progress Bryan Walters With enough space to handle all dataRequest NIAID permission to purchase PSD 0.5 8/16 8/16 TBD Kristen McKeever PSD to hold all final deliverablesReceive NIAID permission to purchase storage device 7 8/16 8/23 Pending Kristen McKeeverPurchase portable storage device 7 8/23 8/30 Pending Bryan WaltersBackup all Oracle Databases and User Workspaces 5 8/30 9/9 Pending Vince Desborough Backup data to storage deviceBackup Gira and Confluence (ticketing system) 2 9/9 9/11 Pending Bryan Walters Will backup to PSD and shut downDeliver ORACLE data to NIAID 1 9/11 9/12 Pending TBD Deliver data to NIAIDBRC SOFTWARE, TOOLS, and CODE Data processing/analysis/cleansing/harmonizing tools 30 5/29 6/28 Done BRC Team Documented in SDP and available on web site and public GitHub repositoryOpen Source tools and proprietary/licensed tools 30 5/29 6/28 Done BRC Team Documented in SDP and available on web site and public GitHub repositoryRepository for tools code developed under contract 30 5/29 6/28 Done BRC Team Documented in SDP and available on web site and public GitHub repositoryDOCUMENTATION: ADMINISTRATION & USER Update and Post the BRC Final Transition Plan

Link the Transition Plan from the web sites 85 6/6 8/30 In Progress BRC TeamContinue iterating and updating the plan 85 6/6 8/30 In Progress Andy Greenleaf No dependency on proprietary infrastructure

Update and Post the BRC CompendiumUpdate the compendium as part of the transition plan to reflect current capabilities of the BRC

20 6/10 6/30 Done BRC Team

Link (publish) the compendium from the web sites 61 6/30 8/30 In Progress BRC TeamDocumentation - System and User

On-Line Help, Tutorials and Training Materials 30 5/29 6/28 Done BRC TeamSOPs and administrative documentation 30 5/29 6/28 Done BRC TeamRelease Notes and related system documentation 30 5/29 6/28 Done BRC Team

GOVERNMENT FURNISHED EQUIPMENT GFE DISPOSITION - Decommission/Disposal

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Inventory/Collection of all RETIRED BRC GFE 60 3/16 5/15 Done Andy Greenleaf All retired GFE is stored on racks in the Server Room (2101 Gaither Road)NIAID Contacted concerning contract GFE 0 7/19 7/19 Done Kristen McKeever NIAID (Brian Madgey) response: "The NIAID close out team will be reaching out

to you one month prior to the completion of the contract with details regarding the process for close out and GFE. We will have forms that you will be required to submit. Once the forms are done, I will work with our NIH Property Office to make the determination of what should be done with the equipment. "

Request final disposition instructions from NIAID 0 8/15 8/15 TBD Kristen McKeever Receive final disposition instructions from NIAID 0 8/15 8/15 TBD NIAID Contracts

Notify NGC Property of NIAID instructions 1 8/15 8/16 Pending NGC ContractsDevelopment Environment Disassembly/Disposal Complete all work on development server 7/31 8/30 In Progress BRC Team Backup all servers 4 8/30 9/3 Pending BRC Team Shutdown, Label, and Disconnect all GFE 1 9/3 9/4 Pending BRC Team Unbolt and remove GFE to shelves 1 9/4 9/5 Pending BRC Team Disassemble Racks (2) 1 9/5 9/6 Pending BRC Team Dispose of the GFE 1 9/9 9/10 Pending BRC TeamACCOUNTS & LICENSES ORACLE database licenses. One-time license purchase; Maintenance renewed annually - expires 09/14

Determine who owns licenses and their disposition 0.5 8/16 8/16 TBD Kristen McKeever Contact Oracle about status of license after 09/14If NGC owns the license, transfer to another program? 1 9/13 9/14 Pending BRC Team Can be transfered to another program or server without maintenance?If NIAID owns the license, let maintenance expire 1 9/13 9/14 Pending NIAID Let maintenance expire on 9/14 and let NIAID renew under new contract.

Red Hat Licensing Done BRC Team Available on AWS configuration with "Bring your own license"Cloud Accounts: Amazon Web Services (AWS) - Production/Test. AWS has no licenses; only pay for service. Renewed annually; expire on 9/14

Request NIAID instructions on AWS needs 0.5 8/16 8/16 TBD Kristen McKeever NIAID expectations for AWS services after 9/14Receive NIAID instructions on AWS needs 7 8/16 8/23 Pending Kristen McKeeverResolve need to transfer the 18 AWS servers 18 8/12 8/30 Pending BRC Team

If AWS not needed, notify AWS to delete account 15 8/30 9/14 Pending BRC Team NGC to notify AWS to delete the account; (Once deleted there is no recovery)If NIAID needs it, negotiate transfer or billing 15 8/30 9/14 Pending BRC Team NGC and NIAID to negotiate transfer or billing

URL Registration - Go Daddy (ViPR and IRD). Renewed by NGC annually based on contract year; expire on 9/14Request NIAID instructions on URL needs 0.5 8/16 8/16 TBD Kristen McKeever NIAID expectations for URL services after 9/14Receive NIAID instructions on URL needs 7 8/16 8/23 Pending Kristen McKeeverResolve need to transfer URL domain names 21 8/23 9/13 Pending Bryan Walters Bryan to assist with transfer, if neededResolve need to point URL's to other domain 21 8/23 9/13 Pending Bryan Walters Bryan would simply redirect the URL in Go Daddy

Additional Accounts & LicensesTwitter, Facebook, YouTube etc. 18 8/12 8/30 TBD JCVI JCVI maintains accounts, access, and passwordsScientific software licenses, if any 18 8/12 8/30 TBD BRC Team Bryan to assist with transfer, if neededUser distribution lists, community listservs (google/yahoo groups)

18 8/12 8/30 In progress BRC Team Newsletter lists; Workbench accountsList of users can be generated by Sam

CONTRACT END 9/14 9/14

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2. SYSTEMS AND SUBSYSTEMS INFORMATION

2.1 SYSTEM INFORMATION

The systems and subsystems developed and maintained by the NGC team are:

System DescriptionViPR and IRD web sites https://www.viprbrc.org | https://www.fludb.orgViPR and IRD database The ViPR and IRD database stores data on all available sequences, proteins, structures, epitopes,

surveillance, phenotypes, and clinical and host responses. ViPR and IRD data processing tools

ViPR and IRD provide computationally intensive tools on separate machines (servers) to perform backend analyses of data chosen by users from the web sites.

Other Supporting Systems These support the development and maintenance of the entire application.

At the time of the original ViPR award, Northrop Grumman’s Health Solutions group, as the prime contractor, delivered on the Government’s request to achieve economies of scale on the ViPR and IRD contracts by designing a shared hardware architecture for both systems. At the end of the IRD award, all IRD hardware was transferred to the ViPR contract for continued operation resulting in one configuration supporting both systems (ViPR and IRD), yet split into development and production/test environments.

2.1.1 Development EnvironmentNorthrop Grumman provides a local development environment as part of our performance on the contract to assist the NGC development team in designing and building new software and preparing new data for release to the production environment. As such, this environment will not transition upon award. The development environment will be backed up, shutdown, and disassembled for disposal according to the schedule appearing in Table 1: Transition Schedule with completion by 09/13/2019, if not earlier.

2.1.2 Production EnvironmentNGC’s current production configuration supports the public-facing ViPR and IRD web solutions with identical production, test, and backup environments.

These reside in AWS and could be transitioned, if desired by the NIAID and awardee.

A single AWS administrator account which oversees all assets could also be transitioned, if desired.

If the production environment is desired by the NIAID and awardee, several activities are required. See Table 1: Transition Schedule for details and timeframe.

2.2 PROJECT STAFF / STAKEHOLDERSStakeholders DescriptionOur Project Team ViPR: https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprInfo&subtype=Team

IRD: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=Team

Scientific Advisors and Scientific Working Group

ViPR: https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprInfo&subtype=ScienceSupportIRD: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=ScienceSupport

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The NGC implemented a redundant, cloud-based architecture for ViPR and IRD to ensure no downtown.

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3. DATA AND DATABASE ASSETS

Throughout the BRC contracts, the NGC Development Team continued to design and implement shared architecture changes that consolidated resources and minimize costs of the ViPR and IRD systems. This section summarizes the system resources that we have designed and currently maintain.

3.1 DATA SCHEMA

The NGC team designed the ViPR and IRD architecture to include development, test and production database environments to ensure easy transition of high-quality data and tools to the stakeholders with minimal risk for operational disruptions. In addition, the Test and Production environments use identical configurations to limit incompatibility issues and guide smooth deployment of data and software from test to production.

The consolidated database is deployed on a highly-available, scalable Oracle 12c Real Application Cluster (RAC) architecture using Oracle Automated Storage Management (ASM) and includes high-end Linux servers attached to a high capacity, performance efficient 16 TB expandable storage array.

Each database cluster node is a Linux AS5 based server with a single quad-core processor and 32GB RAM, and comprised of two nodes (extensible to n-nodes as load increases) attached to a 16TB EMC Array striped at RAID5.

Total available database size is 14 TB including staging, lookup, production, and auxiliary datasets.

Nodes linked with a dotted line show how the database grid can easily accommodate expansion and scaling; e.g. to accommodate new storage requirements. The cluster processing solution with a high capacity storage array can accommodate rapidly growing user populations and loads, addition of more resource-intensive data prediction algorithms, and increasing data volumes by enabling hardware configuration expansion without changing any applications and with minimal downtime.

Our architecture allows load balancing to deliver maximum database availability and performance.

Our current database contains over 30 schemas designed to support the wide range of viral and influenza data contained in the system. Details on the tables and relationships are easily available through Oracle Enterprise Manager.

To ensure accurate data import into the staging schemas, all IRD and ViPR data are described fully with documentation for every used data standard.

o https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=Document&param=ird- data-standards.html

o https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=Document&param=vipr- data-standards.html

The development environment uses slightly lower capacity servers in terms of hardware configuration but maintains exactly the same software configurations.

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3.2 DATA DICTIONARY

The BRC ViPR and IRD systems share a data repository that supports an expansive set of viral and influenza family data. The model supports the rapid inclusion of new data types as they arise and the following tables illustrate the databases and underlying tables supporting viral and influenza research.

3.2.1 Databases/SchemasPRIMARY Databases / Schemas # Tables SECONDARY Databases / SchemasPROD-BRCWAREHOUSE DB # Tables # TablesBRC 66 AMUNDI 2 HZHAO 262

BRCWAREHOUSE 992 APPQOSSYS 5 LBACSYS 22

CEIRS 217 AUDSYS 2 MDSYS 140TI_USER 90 C##GGADMIN 2 OJVMSYS 6PROD-UNIPROT DB CSULOWAY 30 OLAPSYS 2UNIPROT 52 CTXSYS 53 ORDDATA 90PROD-WORKBENCH DB DBEXPORT 5 ORDSYS 5BRC 124 DBSFWUSER 3 OUTLN 3PROD-BRCWAREHOUSE STAGE DB DBSNMP 20 SPOTLIGHT 66

BHB_STAGING 649 DVSYS 40 WMSYS 40DOTS 660 GGBRC 96 XDB 53DOTSVER 240 GSMADMIN_INTERNAL 41

DRIV_BIO_PRJ 158

ORTHOMCL 27

SRES 58

SRESVER 44

VBRC 8

3.2.2 Database and Underlying TablesAMUNDI SYS_EXPORT_FULL_01 SYS_EXPORT_SCHEMA_01APPQOSSYS WLM_CLASSIFIER_PLAN

WLM_FEATURE_USAGEWLM_METRICS_STREAMWLM_MPA_STREAM

WLM_VIOLATION_STREAM

AUDSYS AUD$UNIFIED CLI_SWP$2f96c35$1$1BHB_STAGING STG_IEDB_REFERENCE_MAY18C##GGADMIN CHECKPOINT CHECKPOINT_LOXDBEXPORT DBBACKUP

DBBACKUP_ORIGEXPORT_TABLESEXPORT_TABLES_ALL

JAVA$OPTIONS

DBSFWUSER ACL$_OBJ EXADIRECT_ACL IP_ACLDBSNMP BSLN_BASELINES

BSLN_METRIC_DEFAULTSBSLN_STATISTICSBSLN_THRESHOLD_PARAMSBSLN_TIMEGROUPSMGMT_BASELINEMGMT_BASELINE_SQLMGMT_BSLN_BASELINESMGMT_BSLN_DATASOURCES

MGMT_BSLN_INTERVALSMGMT_BSLN_METRICSMGMT_BSLN_STATISTICSMGMT_BSLN_THRESHOLD_PARMSMGMT_CAPTUREMGMT_CAPTURE_SQLMGMT_DB_FEATURE_LOGMGMT_DB_FILE_GTTMGMT_DB_SIZE_GTT

MGMT_HISTORYMGMT_HISTORY_SQLMGMT_LATESTMGMT_LATEST_SQLMGMT_RESPONSE_BASELINEMGMT_RESPONSE_CONFIGMGMT_SNAPSHOTMGMT_SNAPSHOT_SQLMGMT_TEMPT_SQL

DRIV_BIO_PRJ ORTHO_SOG_CORONA_DA_MAP ORTHO_SOG_CORPOX_MASTER2ORTHO_SOG_CORPOX_DA_MAP ORTHO_SOG_POX_DA_MAP

OLAPSYS ALL$AW_CUBE_ENABLED_HIERCOMBOALL$AW_CUBE_ENABLED_VIEWSALL$AW_DIM_ENABLED_VIEWS

ALL$OLAP2_AW_CUBE_AGG_MEASALL$OLAP2_AW_CUBE_AGG_OPALL$OLAP2_AW_CUBE_AGG_SPECS

ALL$OLAP2_AW_DIM_LEVELSALL$OLAP2_AW_DIMENSIONSALL$OLAP2_AW_PHYS_OBJ

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ALL$OLAP2_AW_ATTRIBUTESALL$OLAP2_AW_CATALOG_MEASURESALL$OLAP2_AW_CATALOGSALL$OLAP2_AW_CUBE_AGG_LVL

ALL$OLAP2_AW_CUBE_DIM_USESALL$OLAP2_AW_CUBE_MEASURESALL$OLAP2_AW_CUBESALL$OLAP2_AW_DIM_HIER_LVL_ORD

ALL$OLAP2_AW_PHYS_OBJ_PROPXML_LOAD_LOGXML_LOAD_RECORDS

ORDSYS ORD_CARTRIDGE_COMPONENTSORD_USAGE_RECSSI_FEATURES_TABSI_IMAGE_FORMAT_CONVERSIONS

SI_IMAGE_FORMAT_FEATURESSI_IMAGE_FORMATSSI_IMAGE_FORMATS_TABSI_THUMBNAIL_FORMATS

SI_VALUESSI_VALUES_TAB

OJVMSYS OJDS$ATTRIBUTES$OJDS$BINDINGS$

OJDS$INODE$OJDS$PERMISSIONS$

OJDS$REFADDR$OJDS$SHARED$OBJ$

OUTLN OL$ OL$HINTS OL$NODES

Database: BRC B_USER_SHARED_WORKBENCH_ITEMSB_WB_FOLDERB_WB_SAVED_ANALYSISB_WB_SAVED_SEARCHB_WB_UPLOADED_FILEB_WB_WORKING_SETB_WB_WORKING_SET_ITEMB_WORKBENCH_INFOBATCH_SUB_SMPL_VALIDATIONBATCH_SUBMISSIONSBATCH_SUBMIT_MESSAGESBATCH_SUBMIT_PROTEINSBATCH_SUBMIT_SAMPLESBATCH_SUBMIT_SEQUENCESCDSSEQCDSSEQ2CLINICAL_METADATA_REQUESTCOLLABORATOR_GROUPCOLLABORATOR_GROUP_BKCOMPUTE_RUNCOMPUTE_TOOLDELETION_MAPPING_LOOKUP_ALL

EMAIL_REQUESTFOLDER_PARENT_MAPPINGFOLDER_WORKBENCH_ITEMSGBROWSECONFIGURATIONGBROWSECONFIGURATION_TESTHOST_STUDY_SAMPLE_COMBOMONITOR_TOOL_STATUSOPERONENTITY_MVPARENTFOLDERLOOKUPPIPELINE_TICKETPLAN_TABLEREAGANT_REQUESTSVFT_REFERENCE_TABLESVFT_REFERENCE_TABLE_BKTESTUSAGE_DOWNLOAD_MTRXUSAGE_METRICSUSAGEMETRICS_UPDUSER_COLLABORATOR_GROUPUSER_INFORMATIONUSER_REGISTRATIONUSER_REGISTRATION_BAK121710

USER_ROLEUSER_ROLE_MATRIXUSER_SHARED_WORKBENCH_ITEMSWB_FASTA_DEFLINEWB_FOLDERWB_FOLDER_PATHWB_FOLDER_PATH2WB_SAVED_ANALYSISWB_SAVED_ANALYSIS_MLUWB_SAVED_SEARCHWB_UPLOADED_FILEWB_UPLOADED_FILE2WB_WORKING_SETWB_WORKING_SET_ITEM_040308WB_WORKING_SET_ITEM_BKUPWB_WORKING_SET_ITEM_BKUP_B4FIXWB_WORKING_SET_ITEM_BKUP051110WB_WORKING_SET_ITEM_BKUP061710WEB_USER_RESULTSWORKBENCH_FOLDER_MAPWORKBENCH_INFOWS_ITEM_DATA_FIX

Database: BRCWAREHOUSE AA_FOMA_MVAA_PSIPRED_PREDICTIONS_MVAASEQUENCEAC_20180902AC_20190127ACTIVE_SITEADD_NEW_PAXALEXA_REPORTALEXA_REPORT2ALEXA_REPORT3ALEXA_REPORT4ALL_GI_TAXON_WHAUTHORAUTO_ALIGNMENT_ISSUE_MVAUTO_ALIGNMENT_ISSUE_MV_OLDAVIAN_HOST_LOOKUPBARBS_FLU_SF_TYPE_DATABARBS_VALIDATE_VT_COUNTSBEI_DATABHB_ANNOTATION_STATISTICSBHB_NEWSBIBLIOGRAPHICREFERENCEBIN$a177kIDOGBLgUyUBAArgpA==$0BIN$a9B2Bfd6DkHgUyUBAArHDg==$0BIN$b+75SEoqNZPgUyUBAAqGbw==$0BIN$b04LPvzFIA3gUyUBAApkfQ==$0

DRUG_PROTEIN_SF_VARIANTS_TEMPDRUG_PUBMEDDRUG_TARGETDRUG_TRGT_POLYPEPTIDESDRUG_VIRUS_LINKDRUGBANK_MSTDRUGBANK_TARGETSDRUGCARDDS_BHB_GENERATED_DATADS_IMPORTED_PUBLIC_DATADU_BHB_GENERATED_DATADU_IMPORTED_PUBLIC_DATADUMPLICATE_ORGTAXONDUP_FLUA_STRAINSDUP_STAGING_NF_SFECEMBLEMPRES_DISEASE_EVENT_INFOEMPRES_DISEASE_EVENT_INFO_BAKEMPRES_DISEASE_EVENT_INFO_XEPITOPE_START_END_NOV16ERR$_DOTS_SIMILARITYERROR_INFORMATIONEXPERIMENT_DESC_CURATIONEXPERIMENT_DESC_CURATION_TEMPEXTDB_LIST

ORGANISMSTRAIN_PT_TEST2ORGANISMSTRAIN_ROLLEDUPORGANISMSTRAIN_TESTORGANISMSTRAIN_TEST2ORGANISMTAXONORGANISMTAXON_B4_ORGID_UPDORGANISMTAXON_HCVORGANISMTAXON_NOV17_BKORGANISMTAXON_VORGID_TEMPORGSEGMENT_GENESYMBOLORTHOLOG_GROUP_SHORTNAME_STEP1ORTHOLOG_GROUP_SHORTNAME_STEP2ORTHOLOG_GRP_NAME_NCBI_STEP1ORTHOLOG_GRP_NAME_NCBI_STEP2ORTHOLOG_GRP_NAME_SP_STEP1ORTHOLOG_GRP_NAME_SP_STEP2ORTHOLOG_GRP_NAME_STEP3ORTHOLOG_GRP_PFAMACC_STEP1ORTHOLOG_GRP_PFAMACC_STEP2ORTHOLOG_MEMBER_CNT_QCPANTHERPARAMETER_CATEGORYPARAMETERSPARTIAL_VBRC_ACCESSIONPDB_ATOM_INFO

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NIAID BRC – ViPR and IRD

Final Transition Plan

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EXTERNAL_DATA_SOURCES_UPDATESEXTERNAL_SNPSEXTRACT_IEDB_BASED_SF_FINALEXTRACT_SF_FROM_IEDBEXTRACT_SF_FROM_IEDB_VEXTRACT_SF_FROM_IEDB_V_2FEATUREFEATURE_VARIANT_NAMESFEATURE_VARIANT_TYPESFEATURECOMMENTSFEATURERELATIONFIND_FLU_NONSTD_PROTEINNAMEFIX_BLAST_DETAIL_UPDATE_STGFIX_DUP_FLUA_NAGENOMEFIX_DUP_FLUA_ORGSTRAINSFIX_DUP_FLUA_STRAINSFIX_EC_UNIPROTFIX_IEDB_NCBIPROTEINIDFIX_IEDB_PROTEINGIFIX_PROTEINRELATION_SEPT16FIX_TAXONIDFLU_ORGSTRAIN_TOBE_DELETEDFLU_PROTEIN_SF_VARIANTSFLU_PROTEIN_SF_VARIANTS_PP_OLDFLU_STANDARD_PRO_NAMEFLU_STRAIN_SF_VARIANTSFLU_SUBMISSION_REPORTFOMA_MVFOMASNP_AA_BAD_SEQFOMASNP_HOST_MAPPINGGB_REFERENCEGBROWSECONFIGURATIONGENBANK_STRAIN_NAME_MAPGENBANKACCESSION_ISD_MAPGENEGENE_B4_ORGID_UPDGENE_LOCUSTAG_MAP_VGENE_PRE_ORGID_UPDATEGENE_STATISTICSGENEONTOLOGYGENEONTOLOGY_OLD_01282019GENOME_ACCESSION_MAP_VGENOME_OTHER_INFOGENOME_OTHER_INFO_LINEAGEGENOME_OTHER_INFO_OTHERGENOME_OTHER_INFO_PERAMIVIRGENOME_OTHER_INFO_XGENOME_STATISTICSGENOME_STATUSGENOMESTATISTICS_MVGENOMESTATISTICS_SUMM_MVGENOMESTATS_NONFLU_SUMM_MVGI2AVGISAID_COMMENTSGOASSOCIATIONGOOD_FEATURE_IDGOOD_NA_SEQUENCEH1N1_BCELL_SEG6_REPORTH1N1_IEDB_ANALYSISH5N1_WHO_CLADE_DATAHAMAPHF_ANALYSIS_WORKFLOWHF_ASSAYHF_BIGWIG_FILEHF_BIOSAMPLEHF_BIOSET_AUTO_CURATIONHF_BIOSET_INFO_MV

PDB_OTHER_FILESPDB_RUN1PDB_SP_INDEX_MAPPDB_SP_INDEX_MAP_JAN19PDB_SP_INDEX_MAP_MAR19PDB_SP_INDEX_MAP_NOV18PDB_SP_INDEX_MAP_SEP18PDBSTRUCTURE_MSTPDBSTRUCTURE_MST_DUPSPDBSTRUCTURE_MST_JAN19PDBSTRUCTURE_MST_MAR19PDBSTRUCTURE_MST_NOV18PDBSTRUCTURE_MST_SEP18PEPITOPE_MV_NF_MAY16_BAT1PEPITOPE_MV_NF_MAY16_BAT2PFAMPFAM_DOMAINPFAM_DOMAIN_AUTO_BKPFAM_DOMAIN_DUP_DELETE_RECORDPFAM_OTH_FEA_DUP_DELETE_RECORDPFAM_OTHER_FEATUREPFAM_OTHER_FEATURE_AUTO_BKPHOSSITEPIRPIRSFPIVOTEDTABLEPOX_SF_RENAMEPOX_STEP1_FAMILYPREDICTED_EPITOPEPRIMER_PROBE_METADATAPRINTSPROCESS_IEDB_PDBPROCESS_IEDB_PDB_BAKPROCESS_IEDB_PDB_BAK2PROCESS_IEDB_PDB_JAN19PROCESS_IEDB_PDB_JUL18PROCESS_IEDB_PDB_JULY17PROCESS_IEDB_PDB_MAR19PROCESS_IEDB_PDB_NOV18PROCESS_IEDB_PDB_OLDPROCESS_IEDB_PDB_SEPT18PRODOMPROSITEPROSITE_OLD_01282919_BPROTEINPROTEIN_B4_ORIG_UPDPROTEIN_F_FIX_LISTPROTEIN_IEDB_PDBPROTEIN_IEDB_PDB_TESTPROTEIN_MUTATION_MARKERSPROTEIN_PROTEINGI_MAP_VPROTEIN_REMAINING_NAMESPROTEIN_STATISTICSPROTEIN_STATISTICS_MVPROTEIN_STATISTICS_NEW_MVPROTEIN_STATISTICS_VPROTEIN_SWISSPROT_MAPPED_MVPROTEINDBPROTEINEPITOPE_COUNTPROTEINEPITOPE_MVPROTEINEPITOPE_MV_FLU_JAN17PROTEINEPITOPE_MV_JAN19PROTEINEPITOPE_MV_JUL18PROTEINEPITOPE_MV_MAR19PROTEINEPITOPE_MV_MAY19PROTEINEPITOPE_MV_NF_JAN17PROTEINEPITOPE_MV_NOV18

June 21, 2019 11 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: BRCWAREHOUSE BIN$d6JXx1mGEbTgUyUBAAr9+w==$0BIN$d7Z1d8iyFcfgUyUBAAq3yw==$0BIN$d8qTKh40CrXgUyUBAAo1Dw==$0BIN$d96w2DmOAz3gUyUBAAqNyg==$0BIN$daPDFuAuD0ngUyUBAApQgg==$0BIN$du1Ml6FRSlvgUyUBAAow8Q==$0BIN$dV8lYvG6G7vgUyUBAAr3EQ==$0BIN$dV8lYvG7G7vgUyUBAAr3EQ==$0BIN$dwFqRLH7IBPgUyUBAApH/g==$0BIN$dxWH/FQCIHPgUyUBAArxSw==$0BIN$dymlrPyifVLgUyUBAArtoQ==$0BIN$dz3DWBa4VdrgUyUBAArwYw==$0BIN$e0CEHfbJeCbgUyUBAAqt8w==$0BIN$e1Sh0VOgBW/gUyUBAApM2Q==$0BIN$e2i/hU58eM/gUyUBAArL0A==$0BIN$e3zdMe8dAgjgUyUBAAoPTg==$0BIN$e5D62RcaBV3gUyUBAAooDA==$0BIN$e6UYi8W+ex/gUyUBAApqpw==$0BIN$e7k2PYOEcrbgUyUBAAoE+A==$0BIN$e81T7Kg6Ye3gUyUBAAoBVQ==$0BIN$ea1buf0qSAvgUyUBAApL+w==$0BIN$eAbsPoWeX+TgUyUBAAq8RA==$0BIN$eBsJ80GJUVLgUyUBAArgIw==$0BIN$eC8noRdWYTTgUyUBAArkOQ==$0BIN$ecF5csLcGf7gUyUBAAovng==$0BIN$edZtrhSjK7ngUyUBAArEBQ==$0BIN$eENFTOeDdAXgUyUBAApN9w==$0BIN$eeqLZZ4hE83gUyUBAAq8YQ==$0BIN$ef6pEAzJaafgUyUBAApZZg==$0BIN$eFdjCOAYZLrgUyUBAAroFw==$0BIN$eGuAqdubUavgUyUBAAqv/Q==$0BIN$eH+eZpWFW17gUyUBAAov8g==$0BIN$ehLGvVMVPQHgUyUBAArt1A==$0BIN$eibkdevQER3gUyUBAAp04g==$0BIN$eJO8DKlfSLngUyUBAApnDg==$0BIN$ejsCIcLAbTvgUyUBAApfzw==$0BIN$ek8f1mBbRtjgUyUBAAqmxA==$0BIN$eKfZxW9ST73gUyUBAArKrA==$0BIN$eLv3bVkBSiDgUyUBAAoAGA==$0BIN$emM9gnMEI2zgUyUBAAryXw==$0BIN$eNAVKll4Vv/gUyUBAArDlg==$0BIN$endbNC8eFIDgUyUBAAqUNQ==$0BIN$enlTBnYALMjgUyUBAAqLTw==$0BIN$enlTBnYBLMjgUyUBAAqLTw==$0BIN$eOQy0jZuT4bgUyUBAApf4w==$0BIN$eot46NuUEe7gUyUBAAq4ZQ==$0BIN$ep+WmNbaDtfgUyUBAAq70A==$0BIN$ePhQg10HL/fgUyUBAAoE9g==$0BIN$eQxuMaA5NcjgUyUBAAoj8g==$0BIN$erO0RcdBBgTgUyUBAAo7VA==$0BIN$eSCL6a6FN3vgUyUBAApOAg==$0BIN$esfR98veGHXgUyUBAAqPaQ==$0BIN$eTSplO4vMyHgUyUBAAquxw==$0BIN$etvvpR+PeJLgUyUBAAoHxg==$0BIN$eUjHSmfbFUrgUyUBAArF2A==$0BIN$evANXx9VBxLgUyUBAAoObQ==$0BIN$eVzk9iCQM+LgUyUBAAr0pw==$0BIN$ewQrE/20A2rgUyUBAArx8A==$0BIN$eXECq1MLCF3gUyUBAAr+lA==$0BIN$exhItXMXfP7gUyUBAAqy+g==$0BIN$eYUgXIi0JErgUyUBAArDpg==$0BIN$eyxmb7aOBMjgUyUBAAqT1g==$0BIN$eZk+D7xjdPHgUyUBAAp0ZA==$0BIN$f+ouWNlPHO/gUyUBAAqAqg==$0BIN$fyTz/wlKfB/gUyUBAAovzg==$0BIN$fzmCeIFdRsbgUyUBAAoTlg==$0BIN$fzmCeIFeRsbgUyUBAAoTlg==$0

HF_BIOSET_LISTHF_BIOSET_MANUAL_CURATIONHF_BIOSET_METADATAHF_BM_ASSAY_LINKHF_BM_DPE_LINKHF_COHORT_LINKHF_COHORT_LISTHF_CORR_EDGE_ALLHF_CORR_GENE_SIG_PVAL_ALLHF_CORR_MODULE_META_ALLHF_CORR_NODE_ALLHF_CRITERIA_LINKHF_CRITERIONHF_DATA_PROCESS_EVENTHF_DETECTION_TECHNIQUEHF_DISEASE_COURSE_STAGEHF_DISEASE_LISTHF_DPE_ASSAY_TREATMENT_LINKHF_DPE_LINKHF_EXP_POS_EXP_MVHF_EXPERIMENTHF_EXPERIMENT_INFO_MVHF_EXT_REPOSITORY_LISTHF_EXT_REPOSITORY_URLHF_INSTITUTIONHF_POS_HOSTFACTOR_EXPRESS_MVHF_PROTOCOLHF_PROTOCOL_LINKHF_REAGENTHF_REAGENT_ANNOTATIONHF_REAGENT_ANNOTATION_OBS_BYHF_REAGENT_ANNOTATION_UNKNOWNHF_RESULT_MATRIX_SUMM_MVHF_RESULT_MTRX_INFOHF_RSLT_MTRX_PROBE_PATTERN_MVHF_SAMPLING_EVENTHF_STUDYHF_STUDY_SAVEHF_SUBJECTHF_SUBJECT_ASSESSMENTHF_TRAVERSE_EVENTSHF_TREATMENT_AGENTHF_TREATMENT_EVENTHOME_PAGE_HIGHLIGHTSHOMOLOGENE_MSTHOST_FACTOR_SUMMARY_VHSSPIEDB_ASSAY_VIEDB_ASSAYSIEDB_ASSAYS_JAN19IEDB_ASSAYS_JUL18IEDB_ASSAYS_MAR19IEDB_ASSAYS_MAY18IEDB_ASSAYS_NOV18IEDB_ASSAYS_SEP18IEDB_BASED_SF_NF_FLAVI_STEP4IEDB_BASED_SF_NF_HERPE_STEP4IEDB_BASED_SF_NF_POX_STEP4IEDB_BASED_SF_NF_STEP4IEDB_BASED_SF_STEP1IEDB_BASED_SF_STEP2IEDB_BASED_SF_STEP3IEDB_BASED_SF_STEP4IEDB_BASED_SF_STEP4_NFIEDB_CNT_NEWIEDB_CNT_OLDIEDB_DATA_PREP_MV

PROTEINEPITOPE_MV_SEP18PROTEINLOCALIZATION_MVPROTEINLOCALIZATION_VPROTEINLOCALIZATION_V_OLDPROTEINNAME_CONVPROTEINRELATIONPROTEINRELATION_MVPROTEINRELATION_MV_040619PROTEINRELATION_MV_PROSITE_OPROTEINRELATION_NEW_VIEWPROTEINRELATION_OLD_VIEWPROTEINRELATION_STATISTICS_MVPS_PLASMID_FEATUREPS_PLASMID_PUBLICATIONPS_PLASMID_SUMMARYPS_PLASMID_VECTORPUBMED_INFOPVT_MSTPVT_MST_JAN17PVT_MST_JUL17PVT_MST_MAR17PVT_MST_SEP16QUEST_SL_TEMP_EXPLAIN1REAGENTDB_INFOREBASEREFERENCE_IDRG_CHEMERIC_GENE_SEGMNTRG_SEQUENCE_LISTRG_SEQUENCE_SEGMENT_INFOROTAA_NULL_ROLLEDUP_AC_SUBTYPEROTAVIRUS_A_ORGSTRAINFIXROTAVIRUS_ALL_ORGSTRAINFIXROWCOUNT_COMPARISONRUPD$_NAGENOMESEQUENCERUPD$_ORGANISMTAXONRUPD$_PROTEINRUPD$_WH_ORTHOLOGSAVED_ORGSTRAINIDSBRI_PDBSBRI_PDB_PROTEIN_MAPPERSEGMENT_MARKER_MSTSEGMENT_MARKER_MST_B_10261SEGMENT_MARKER_MST_BKSEGMENT_MARKER_MST_MVSEPT16_OBSOLETE_GENOMESEQ_SUBMITTER_CEIRS_CENTERSEQUENCE_CURATE_RESULTSEQUENCE_CURATE_RESULT_JAN19SEQUENCE_CURATE_RESULT_NOV18SEQUENCE_CURATE_RESULT_SEP18SEQUENCE_FEATURE_TREE_INFOSF_IEDB_ANALYSISSF_IEDB_ANALYSIS1SF_IEDB_ANALYSIS12SF_IEDB_ANALYSIS13SF_SOURCE_STRAIN_INFOSF_SOURCE_STRAIN_INFO_COPYSF_VARIANT_COUNTS_VSFVT_COUNTS_MVSFVT_POS_LOOKUPSFVT_POS_LOOKUP_FLUSFVT_POS_LOOKUP_FLU1SFVT_POS_LOOKUP_FLU1_BKSFVT_POS_LOOKUP_FLU1_NEWSFVT_POS_LOOKUP1SFVT_POS_LOOKUP1_NEWSFVT_PVT_MAP_MST

June 21, 2019 12 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: BRCWAREHOUSE BIN$fzmCeIFgRsbgUyUBAAoTlg==$0BIN$fzmCeIFhRsbgUyUBAAoTlg==$0BIN$g/id6uKBJELgUyUBAAq+Cw==$0BIN$g+SAHHZmZhPgUyUBAAqGXg==$0BIN$g0Rn8syQH2zgUyUBAAreKQ==$0BIN$g1iFzp8hJMTgUyUBAAol7A==$0BIN$g2yjpklPb0TgUyUBAAooPA==$0BIN$g4DBg0LKMYzgUyUBAAqV6Q==$0BIN$g5TfTaQkf//gUyUBAApRXA==$0BIN$g6j9JCtWRIfgUyUBAArT7w==$0BIN$g7xEag1bW0zgUyUBAAqD+g==$0BIN$g9BiQiWmKBXgUyUBAAppEA==$0BIN$gbITHhgiSEjgUyUBAAr2+g==$0BIN$gCl1GQHLew3gUyUBAAowdg==$0BIN$gCl1GQHOew3gUyUBAAowdg==$0BIN$gcYxAEZ+M4bgUyUBAApP5Q==$0BIN$gdpO0ST/ItfgUyUBAArumA==$0BIN$ge5sr5BUEEbgUyUBAApKHw==$0BIN$ggKKhTW6Ao3gUyUBAApNyA==$0BIN$ghaoVksKdMjgUyUBAAqBGQ==$0BIN$girGMErsazzgUyUBAAoFXA==$0BIN$gj7kBE+HXnngUyUBAArEqQ==$0BIN$glMB4USGW0HgUyUBAApCTw==$0BIN$gmcfviCeSZ/gUyUBAAp6Bg==$0BIN$gns9kE6+N6XgUyUBAApjOw==$0BIN$gNTK34C+ekjgUyUBAAouOg==$0BIN$go9bZtjrJyngUyUBAApedQ==$0BIN$gOjovtrlaW7gUyUBAAogGg==$0BIN$gP0GlgJ3WnTgUyUBAAo1DQ==$0BIN$gqN5PS66G0PgUyUBAArsyw==$0BIN$gREkZwoJTcTgUyUBAAp16Q==$0BIN$greXCfQnEhngUyUBAAov9g==$0BIN$gsu069yeevfgUyUBAArS6w==$0BIN$gSVCRqeBNzPgUyUBAApV8A==$0BIN$gt/SxJqRZoPgUyUBAApxeQ==$0BIN$gTlgHK1GJSngUyUBAAqReQ==$0BIN$gU198dNKFCfgUyUBAAq8PA==$0BIN$gvPwmdnjUxjgUyUBAArX1A==$0BIN$gWGbzDxkAhDgUyUBAAriaQ==$0BIN$gwgOaxg8Q8XgUyUBAAoyvQ==$0BIN$gXW5mgmAbLDgUyUBAAosVg==$0BIN$gxwsST3uNcrgUyUBAAra5w==$0BIN$gYnXc85TYy7gUyUBAAr72g==$0BIN$gZ31TCVaV8bgUyUBAAqtUg==$0BIN$gzBKI7XCAgvgUyUBAAoLkw==$0BIN$hAy7zsd/X7ngUyUBAAq8yg==$0BIN$hCDZpA9uHmzgUyUBAAqMFw==$0BIN$hDT3dKjDWLvgUyUBAAo9nA==$0BIN$hEkVTh3KIavgUyUBAArBBQ==$0BIN$hF0zGTmRZVrgUyUBAArZOw==$0BIN$hHFQ+x6tJePgUyUBAAq28Q==$0BIN$hIVuza7/YfjgUyUBAApOOw==$0BIN$hJmMqpVXIkvgUyUBAArhFw==$0BIN$hK2qfOVqX3bgUyUBAApVWw==$0BIN$hMHIW+UNUgvgUyUBAAp+Tg==$0BIN$hNXmJJ2QPUzgUyUBAArEOw==$0BIN$hOoECk4qKaTgUyUBAAqimg==$0BIN$hP4h1ZISD4/gUyUBAApnWg==$0BIN$hRI/sWgqc1XgUyUBAAoUPQ==$0BIN$hSZdjcPuV2bgUyUBAArMRQ==$0BIN$i/yugIZzS3vgUyUBAAp6EQ==$0BIN$i+iNL3xpPtLgUyUBAArlAw==$0BIN$i0eeKZ+cJk7gUyUBAAr1Mg==$0BIN$i1u8DoVDLKjgUyUBAAre/g==$0BIN$i2/Z83o+M1/gUyUBAAraNw==$0BIN$i4P3zGWkPP7gUyUBAAoA7Q==$0BIN$i5gVrP1pPJbgUyUBAAqvtg==$0

IEDB_EPITOPEIEDB_EPITOPE_DETAILIEDB_EPITOPE_DETAIL_JAN19IEDB_EPITOPE_DETAIL_JUL18IEDB_EPITOPE_DETAIL_MAR19IEDB_EPITOPE_DETAIL_MAY18IEDB_EPITOPE_DETAIL_NOV18IEDB_EPITOPE_DETAIL_SEP18IEDB_EPITOPE_JAN18IEDB_EPITOPE_JAN19IEDB_EPITOPE_JUL8IEDB_EPITOPE_MAR19IEDB_EPITOPE_MAY18IEDB_EPITOPE_NOV8IEDB_EPITOPE_SEP8IEDB_IRD_LINKOUTIEDB_IRD_SF_LINKOUTIEDB_IRD_STRAIN_LINKOUTIEDB_PDB_INDEXIEDB_PDB_INDEX_JAN19IEDB_PDB_INDEX_JUL18IEDB_PDB_INDEX_MAR19IEDB_PDB_INDEX_MAY18IEDB_PDB_INDEX_NOV18IEDB_PDB_INDEX_SEP18IEDB_PDB_MAPPINGIEDB_REFERENCEIEDB_REFERENCE_JAN16IEDB_REFERENCE_JAN17IEDB_REFERENCE_JAN18IEDB_REFERENCE_JAN19IEDB_REFERENCE_JUL17IEDB_REFERENCE_JUL18IEDB_REFERENCE_JULY15IEDB_REFERENCE_JULY16IEDB_REFERENCE_MAR16IEDB_REFERENCE_MAR17IEDB_REFERENCE_MAR18IEDB_REFERENCE_MAR19IEDB_REFERENCE_MAY15IEDB_REFERENCE_MAY16IEDB_REFERENCE_MAY17IEDB_REFERENCE_MAY18IEDB_REFERENCE_NOV15IEDB_REFERENCE_NOV16IEDB_REFERENCE_NOV17IEDB_REFERENCE_NOV18IEDB_REFERENCE_SEP17IEDB_REFERENCE_SEP18IEDB_REFERENCE_SEPT15IEDB_REFERENCE_SEPT16IEDB_SFVT_NEWIEDB_STATISTICSIEDB_SWISS_INDEXIEDB_SWISS_INDEX_JAN19IEDB_SWISS_INDEX_JUL18IEDB_SWISS_INDEX_MAR19IEDB_SWISS_INDEX_MAY18IEDB_SWISS_INDEX_NOV18IEDB_SWISS_INDEX_SEP18IEDB_VIPR_SF_LINKOUTIEDB_VIPR_STRAIN_LINKOUTIMMPORT_EXP_STUDY_METADATA_VINTERNAL_DATA_SOURCES_UPDATESINTERPROINVALID_ROWSIRD_UPDATE_TO_GB_DATA

SFVT_PVT_MAP_MST_JAN17SFVT_PVT_MAP_MST_JUL17SFVT_PVT_MAP_MST_MAR17SFVT_PVT_MAP_MST_NOV16SFVT_PVT_MAP_MST_SEP16SFVT_PVT_RELATION_VSFVT_TOTAL_CLEANUPSFVT_TOTAL_REFRESHSIMILARITYRESULTS_JAN19SIMILARITYRESULTS_MAR19SIMILARITYRESULTS_MAY19SIMILARITYRESULTS_SEP18_FIXSMARTSMRSNPSNP_DOTSSNP_DOTS_VSNP_GENE_NAGENOME_COUNTSNP_GENE_NAGENOME_IDSP_EXPERIMENT_DATA_TYPESP_PROGRAMSP_PROJECTSSGCID_IRD_URLSSSGCID_VIPR_URLSSSTRING_SEARCHSSTRING_SEARCH_BEF_JUL18SSTRING_SEARCH_BKSTAGING_PFAMSTG_MAP_PEPTIDE_NEW_NAALLSTG_PEPTIDE_NEW_NAALLTESTSTG_PROTEIN_SF_VARIANTS_TEMPSTR_PSIPRED_PREDICTIONS_MVSTRAIN_FEATURE_VARIANTSSTRAIN_MARKER_VSTRAIN_MUTATION_MARKERSTRAIN_MUTATION_MSTSTRAIN_VSTUDY_SAMPLE_PendingSUPPORTED_VIRUS_FAMILY_JUL18SUPPORTED_VIRUS_FAMILY_SEP18SUPPORTED_VIRUS_FAMILY_SEP18_BEF_JAN19SUPPORTED_VIRUS_FAMILY_SEP18_OSURV_HOST_WITH_MULTI_SAMPLE_VSV_BIO_SAMP_PROTOCOL_MAPSV_BIO_SAMPLE_MOCK_CLEANUPSV_BIOLOGICAL_SAMPLESV_BIOSET_ANNOTATIONSV_BIOSET_BIOSMPL_MAP_MVSV_BIOSET_INFOSV_BIOSET_METADATASV_CURATED_MASTER_DATASV_CURATED_MASTER_DATA_NEWSV_EXP_SAMPLE_GSM_ID_DATASV_EXP_SAMPLE_URL_DATASV_EXPERIMENTSV_EXPERIMENT_BKSV_EXPERIMENT_DATA_FILESSV_EXPERIMENT_PROTOCOL_MAPSV_EXPERIMENT_PROTOCOL_MAP_BKSV_EXPERIMENTAL_SAMPLESV_PROTOCOLSV_REAGENTSV_RESULT_MTRX_INFOSV_STUDYSV_SUBJECTSV_SUBJECT_PROTOCOL_MAPSWINE_FLU_ANALYSIS_REPORT

June 21, 2019 13 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: BRCWAREHOUSE BIN$i6wzh3brO+fgUyUBAAoT+Q==$0BIN$i8BRb8mBPh3gUyUBAArZOA==$0BIN$i9RvS2iUPkTgUyUBAAoMbg==$0BIN$iHQB7+fbVofgUyUBAAogbA==$0BIN$iHQB7+fcVofgUyUBAAogbA==$0BIN$iHQB7+fiVofgUyUBAAogbA==$0BIN$iHQB7+fmVofgUyUBAAogbA==$0BIN$ii37+GEyepngUyUBAAqseQ==$0BIN$ikIZzi1jVffgUyUBAApk+g==$0BIN$ilY3sZlnWA3gUyUBAAqSyw==$0BIN$impVkFsHXrjgUyUBAArkBg==$0BIN$in5zcoYFWpfgUyUBAAp7zw==$0BIN$ipKRVuK6M1XgUyUBAAoKtw==$0BIN$iQakyrWDczngUyUBAArtYA==$0BIN$iQakyrWEczngUyUBAArtYA==$0BIN$iqavKntdMCTgUyUBAApGBA==$0BIN$irrNCVhmVq3gUyUBAApcnw==$0BIN$is7q7rZmUwngUyUBAAqIRw==$0BIN$iuMIz03jPI3gUyUBAAqLnA==$0BIN$ivcmtkp+HsLgUyUBAAr9lw==$0BIN$iwtElf5cHgjgUyUBAApaBg==$0BIN$ix9ibtJIIMngUyUBAAqO9Q==$0BIN$izOAUqULJWvgUyUBAApJXQ==$0BIN$jBDMac8RT0XgUyUBAAotUQ==$0BIN$jCTqUs6gTpjgUyUBAAonEQ==$0BIN$jDkIK2ocVHrgUyUBAAoMqw==$0BIOCYC_URL_MAPBIOSET_DESC_CURATIONBIOSET_EQUATIONBIOSET_UP_TEMPBLAST_DETAILBLAST_GBROWSE_MVBLAST_PROGRAMSBLAST_PROGRAMS_BEF_JUL18BLAST_PROGRAMS_BKBLAST_RESULTSBLAST_RESULTS_VBLAST_STATISTICSBLAST_STATISTICS_VIRUSBLAST_SUMM_GBROWSE_MVBLAST_SUMMARYBLAST_SUMMARY_SEQIDBLASTDBBRC_10347BRC7620_SOURCEBRCWAREHOUSECATCHUP_MISSING_FLU_SFVT_DATACATCHUP_MISSING_FLU_SFVT_DATA2CEIRS_CODE_CONVERSION_11CEIRS1_NAGENOMESEQUENCE_ALLCEIRS1_NAGENOMESEQUENCE2CEIRS1_SEQUENCE_ALASKACEIRS2_NAGENOMESEQUENCE_ALLCEIRS2_NAGENOMESEQUENCE2CJ_PROTEIN_NAMESCJ_STRAINNAMECJ_TEMPCJ_TEMP_ZCLINICAL_DATA_VBRCCLINICAL_DATA_VBRC_XLSCLINICAL_DATA_VIPRCLINICAL_METADATACLINICAL_METADATA_COHORT_AUTHSCLINICAL_METADATA_REQUESTCLINICAL_PI_CONTACT_INFOCOMMENT_HEADERDoneD_SEGMENT_DIFF

IRD_VIPR_EXTERNAL_TOOLSIRD_VIPR_INTERNAL_TOOLSISOELE_PREDIC_AUTO_BKISOELE_PREDIC_DUP_DEL_RECORDISOELECTRIC_PREDICTIONSJAVA$OPTIONSLIPOPROTEINMAP_IEDB_HOSTMAP_IEDB_HOST1MAT_COM_START_DIFFMAT_COMPARE_PROCESSEDMAT_PEP_COM_NOT_COVERMAT_PEP_COM_NOT_COVER_VMAT_PEP_COM_OTHER_DIFFMAT_PEP_COM_OTHER_DIFF_VMAT_PEP_COM_OTHER_DIFF1MAT_PEP_COM_OTHER_DIFF2MAT_PEP_COM_SEQ_DIFF_ALL_VMAT_PEP_COM_SEQUENCE_DIFF_ALLMAT_PEP_COM_SEQUENCE_DIFF_VMAT_PEP_COM_SEQUENCE_NEWMAT_PEP_COM_SEQUENCE_NEW_COV_VMAT_PEPTIDE_COMP_PROD_ALLMAT_PEPTIDE_UPDATE_DETAILMEROPSMETABOLICPATHWAYMETRICS_STATISTICSMISSING_EPITOPE_SEPT15MISSING_PDBMLOG$_NAGENOMESEQUENCEMLOG$_NONFLU_PROTEINS_SF_VMLOG$_ORGANISMTAXONMLOG$_PROTEINMLOG$_WH_ORTHOLOGMODULE_IEDB_ROLLEDUP_MVMODULE_IEDB_ROLLEDUP_MV_TESTMODULE_IEDB_ROLLUP_STEP1_VMODULE_IEDB_ROLLUP_STEP2_VMODULE_IEDB_ROLLUP_STEP3_VMODULE_IEDB_ROLLUP_VMODULE_IEDB_ROLLUP_V2MONTHLY_RPT_COMPL_GNM_VIA_JCVIMONTHLY_RPT_SEG_VIA_JCVIMONTHLY_RPT_STRAIN_VIA_JCVIMTBTARGETMTBTARGET_STATISTICS_VAL_MVMULTIPLE_CLINICAL_DATANAGENOMESEQ_REFSEQ_OBSOLETENAGENOMESEQUENCENAGENOMESEQUENCE_20180902NAGENOMESEQUENCE_20190127NAGENOMESEQUENCE_HCVNAGENOMESEQUENCE_OBSOLETE_ZIKANAGENOMESEQUENCE_PRE_ORGID_UPDATENCBI_DELETE_SEQNETCTL_WAREHOUSE_STATISTICS_VNETCTL_WAREHOUSE_STATS_VNEW_COMPUTED_HCV_GENOTYPENEW_COMPUTED_HCV_GENOTYPE2NEW_PROTEIN_POSNEWLY_ADDED_GNOMENEWNONFLU_NETCTLNF_PROTEIN_SF_VARIANTS_TEMPNF_SFVT_FROM_UNIPROT_DENGUE1NF_SFVT_FROM_UNIPROT_DENGUE3NF_SFVT_FROM_UNIPROT_DENGUE4NGS_ORGSTRAIN_HCV

SWINE_FLU_BCELL_REPORTSWINE_FLU_BCELL_SEG6_REPORTSYS_EXPORT_SCHEMA_01SYS_EXPORT_TABLE_02TAXONTAXON_SPECIES_MSTTIGRTIGRFAMSTOAD_PLAN_SQLTOAD_PLAN_TABLETOG_CLEAN_PROTEINTOG_STG_MAT_PEPTIDETOG_TOTALTOOL_TYPE_INPUTTUBERCULISTUNIPROT_DUPSUNIPROT_DUPS_AFFECTED_FEATUREUNIPROT_REFRESH_INFOUNIPROT_REFRESH_INFO_BK_RUN1UNIPROT_REFRESH_INFO_BKUPUNIPROT_REFRESH_INFO_NOV18_BKUNIPROT_REFRESH_INFO_SEP17_BKUNIQUE_AA_SEQUENCEUNIQUE_NA_SEQUENCEUNMAPPED_ORGSTRAINSUPDATE_GENES_CJUPDATING_DAILY_GENOTYPE_NOV17V_POX_STEP2_FAMILYVALIDATE_SF_POS_VS_DISPLAYPOSVALIDATE_SOURCE_VTVALIDATE_SSGCID_REC_CNTVALIDATE_VT_COUNTSVBRC_ANNOTATIONVBRC_ANNOTATION_JUL18VBRC_ANNOTATION_SEP18VBRC_EPI_DATAVBRC_EPI_DATA_VVBRC_GENOMEVBRC_KNOWLEDGE_BASEVBRC_MAT_PEPTIDEVBRC_ORTHOLOG_COMPARISONVBRC_ORTHOLOG_EVIDENCEVBRC_ORTHOLOG_GROUPVBRC_ORTHOLOG_GROUP_JUL18VBRC_ORTHOLOG_GROUP_PROPVBRC_ORTHOLOG_GROUP_SEP18VBRC_PDBVC_ANTIVRL_RESISTVC_CHMRIC_GENE_SEGMNTVC_GENE_SEGMENTVC_INFOVC_MICROARRAYVC_STUDYVIPR_BLAST_TEMPVIPR_BLAST_TEMP_JAN18VIPR_BLAST_TEMP1VIPR_ID_EVIPR_ID_NS1VIPR_OBSOLETE_LIST_NOV16VLID_REPEATED_RECORDSVRL_CHRCTR_INFECT_STUDY_VVRL_CHRCTR_PATHOGN_STUDY_VVRL_CHRCTR_TRANS_STUDY_VWAREHOUSE_AREA_ANNOTATION_MVWAREHOUSE_DAILY_PARAMETERWAREHOUSE_MIXED_SUBTYPE_TEMPWH_EXTERNALDB_LINK

June 21, 2019 14 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: BRCWAREHOUSE CONCATSEQ_AUXILIARY_DATACONTINENT_COUNTRY_LOOKUPCORRUPTED_LOB_DATACOUNTRY_HEMISPHERE_LOOKUPCURATED_HOST_LOOKUPDATA_SUMMARY_NON_FLUDATA_SUMMARY_NON_FLU_BKDATA_SUMMARY_NON_FLU_BK2DATA_SUMMARY_NON_FLU_SPDATA_SUMMARY_NON_FLUBKDATA_VALIDATIONDATAHISTORYDBREFDENGUE_V_NEWDENGV_SEROTYPE_UPD_NEWDEV_ORTHOLOGDOTS_NA_FEATUREID_NOTON_STATEDOTS_PROTEINEPITOPE_JAN19DOTS_PROTEINEPITOPE_JUL18DOTS_PROTEINEPITOPE_MAR19DOTS_PROTEINEPITOPE_MAY18DOTS_PROTEINEPITOPE_MAY19DOTS_PROTEINEPITOPE_NOV18DOTS_PROTEINEPITOPE_SEP18DOTS_SIMILARITYDOTS_SIMILARITYSPANDRUG_LINKDRUG_MASTERDRUG_METABOLIZING_ENZYMEDRUG_MUTATION_MSTDRUG_MUTATION_MST_BK1DRUG_MUTATION_MST_BK2DRUG_MUTATION_MST_CJDRUG_MUTATION_MST_TESTDRUG_NCBI_REFSDRUG_PDB_BIND_SITE_MAP_REFSDRUG_PDB_SPECIES_MAP

NON_MATCH_COUNTRYNON_MATCH_HOSTNONAVIAN_HOST_LOOKUPNONFLU_HOST3NONFLU_PROTEINS_SF_VARIANTSNONFLU_PROTEINS_SF_VARIANTS_TNONFLU_SEQ_FEAT_TREE_INFONONFLU_SEQ_FEAT_TREE_INFO_MAY19NONFLU_SEQUENCE_FEATURESNONFLU_SEQUENCE_FEATURES_COPYNONFLU_SF_POSITIONSNONFLU_SF_POSITIONS_COPYNONFLU_SF_VARIANTSNONFLU_SF_VARIANTS_A_H7_SF40NONFLU_SFVT_EXT_FR_UNIPROTNONFLU_UNIQUE_HOSTNONFLU_VALIDATE_SOURCE_VTNONUNIQUE_UNQ_SEQIDOF_ID_ORGSTRAIN_ID_MAP_URL22OF_ID_ORGSTRAIN_ID_MAPPING_URLOPERON_MVOPERONENTITY_MVOPERONGROUPS_MVORAGNISMSTRAIN_B4_ORGID_UPDORGANISMORGANISM_B4_ORGID_UPDORGANISM_PRE_ORGID_UPDATEORGANISM_PT_TESTORGANISM_TEST2ORGANISMSTRAINORGANISMSTRAIN_BKPORGANISMSTRAIN_CJORGANISMSTRAIN_CJ_NOV16ORGANISMSTRAIN_HCVORGANISMSTRAIN_JAN112016ORGANISMSTRAIN_PRE_ORGID_UPDATEORGANISMSTRAIN_PT_TEST

WH_HOST_CATEGORYWH_KEYWORD_SYNONYMSWH_ORTHOLOGWH_ORTHOLOG_EC_COUNTWH_ORTHOLOG_GO_COUNTWH_ORTHOLOG_JAN19WH_ORTHOLOG_JUL18WH_ORTHOLOG_MAR19WH_ORTHOLOG_MASTERWH_ORTHOLOG_MASTER_JAN19WH_ORTHOLOG_MASTER_JUL18WH_ORTHOLOG_MASTER_MAR19WH_ORTHOLOG_MASTER_MAY18WH_ORTHOLOG_MASTER_NOV18WH_ORTHOLOG_MASTER_SEPT18WH_ORTHOLOG_MAY18WH_ORTHOLOG_MEMBER_COUNTWH_ORTHOLOG_NOV18WH_ORTHOLOG_SEPT18WH_SUBMITTERWHO_UNMAPPED_STRAINSWHO_VACCINE_VIRUSWHO_VACCINE_VIRUS_INFOWHO_VACCINE_VIRUS_INFO_TSTWHO_VACCINE_VIRUS_TSTZIKA_PROTEIN_FOR_REPORTZIKA_REPORTZIKA_REPORT_BAKZIKA_REPORT_BRCPRD22ZIKA_REPORT_JAN17ZIKA_REPORT_JAN18ZIKA_REPORT_MAR17ZIKA_REPORT_MAR18ZIKA_REPORT_MAY17ZIKA_REPORT_MAY18ZP_UPDATED

Database: CEIRS AGE_GROUPANALYZE_UNLINKED_JCVI_METADATAASSAY_PROPERTYASSAYSAVIBASE_DATABARBS_CEIRS_DEBUG_TABLEBARBS_CIP_CLA_DATABARBS_TEST_RESULT_COMPAREBIO_SAMPLEBIO_SAMPLE_2_PROTOCOLBIOLOGICAL_SAMPLEBIOLOGICAL_SAMPLE_2_ASSAYSBROAD_COHORT_MAPPINGCDC_REGION_MSTCEIRS_ANIMAL_VCEIRS_FLU_METADATACEIRS_HOST_FLU_RESULT_SUMMCEIRS_HOST_FLU_SEQ_LINK_SUMMCEIRS_HOST_FLU_WITH_SERO_SUMMCEIRS_HOST_FLU_WITH_VI_SUMMCEIRS_HOST_SUMMARYCEIRS_HOST_WITH_STRAIN_SUMMCEIRS_REAGENT_INFOCEIRS_REAGENT_INFO_BKCEIRS_REAGENT_INFO_LEGACYCLINICAL_DATA_ASSAY_PROPERTY

HOST_OLD_ST_JUDEHOST_OLD_UCLAHOST_STUDY_SAMPLE_COMBOHUMAN_SURVEILLANCE_DATA_VIMMPORT_EXP_STUDY_METADATA_VIMMPORT_METADATAINSTITUTION_ORGANIZATIONIRD_ACCESSION_LOGITIS_DATA_MASTERITIS_DATA_RANKITIS_DATA_VERNJCVI_DATA_ASSOCIATIONJCVI_ID_LOOKUPJD_DELETEMEMAP_POLYGONMAP_POLYGON_POINTMONTHLY_HOST_SUMM_REPORTMULTI_TEST_POSITIVE_SEODATANEW_IRD_ACCESSIONSNIH_STRAIN_TESTNO_MATCH_COMMON_NAME_SPECIESNO_MATCH_COMMON_NAME_SPECIES2OLD_UCLA_DATA_CLEANUPOLD_UCLA_DATA_CLEANUP_PART3OLD_UCLA_DATA_NOTOBEDELPLAN_TABLE

STG_SURVEILLANCE_SAMPLE_ERRORSSTG_SURVEILLANCE_SAMPLE_FILESTG_SURVEILLANCE_SAMPLE_STATSSTG_SURVEILLANCE_SPECIESSTUDY_SAMPLESTUDY_SAMPLE_20190123STUDY_SAMPLE_BKUP_04012014STUDY_SAMPLE_DPCC_SV600STUDY_SAMPLE_JULY14STUDY_SAMPLE_OLD_ST_JUDESTUDY_SAMPLE_OLD_UCLASUBJECT_2_ASSAYSSUBJECT_GROUPSUBJECT_ORG_OTHERINFOSUBJECT_ORGANISMSUBJECT_TREATMENTSURV_FLU_VIRUSSURV_FLU_VIRUS_MVSURV_FLU_VIRUS_NEWSURV_FLU_VIRUS_OLDSURV_HOST_OTHER_INFOSURV_HOST_OTHER_INFO_JULY14SURV_HOST_WITH_MULTI_SAMPLE_VSURV_NF_ORGSTRAIN_MAP_1SURV_NF_ORGSTRAIN_MAP_2SURV_NF_ORGSTRAIN_MAP_3

June 21, 2019 15 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: CEIRS CLINICAL_DATA_ASSAYSCLINICAL_DATA_BIOSAMPLECLINICAL_DATA_BIOSAMPLE_ASSAYCLINICAL_DATA_EXPERIMENTCLINICAL_DATA_SBJ_GROUPCLINICAL_DATA_SBJ_TREATMENTCLINICAL_DATA_SUBJECT_ORGANISMCLINICAL_EXP_ABBREVIATIONCLINICAL_STUDY_METADATACODE_CONVERSIONCODE_CONVERSION_BKUPCOUNTRIESCOUNTRY_STATE_CITY_MAPDATA_SOURCEDATA_SOURCE_BAKDISTINCT_GROUPDPCC_DEL_SURV_DATA_20190530DR$SURV_USRDATASTORE_HOST1$IDR$SURV_USRDATASTORE_HOST1$KDR$SURV_USRDATASTORE_HOST1$NDR$SURV_USRDATASTORE_HOST1$PDR$SURV_USRDATASTORE_HOST1$RDR$SURV_USRDATASTORE_HOST1$UDR$SURV_USRDATASTORE_HOST2$IDR$SURV_USRDATASTORE_HOST2$KDR$SURV_USRDATASTORE_HOST2$NDR$SURV_USRDATASTORE_HOST2$PDR$SURV_USRDATASTORE_HOST2$RDR$SURV_USRDATASTORE_HOST2$UERROR_INFORMATIONEXPERIMENTEXPERIMENT_2_ASSAY_PROPEXPERIMENT_2_ASSAYSEXPERIMENT_ABBREVIATIONEXPERIMENT_DATA_SOURCEEXPERIMENT_RESULT_DATAEXPERIMENT_SPECIESFIX_ST_JUDE_INSTITUTION_CODEGEOPOLITICAL_OWL_DATAGSC_CLINICAL_METADATA_PRJHOSTHOST_BKUP_04012014HOST_DPCC_SV600HOST_GROUPSHOST_GROUPS_STAGINGHOST_JULY14HOST_NEW

PROBLEM_UCLA_DATAPROBLEM_UCLA_DATA_2PROBLEM_UCLA_DATA_3PROBLEM_UCLA_DATA_5PROBLEM_UCLA_DATA_6PROBLEM_UCLA_DATA_PART2PROJECT_STUDYPROTOCOLPROTOCOL_PROCESSPROTOCOL_TO_SAMPLEREAGENTREAGENT_2_TREATMENTSAMPLE_DUPLICATESSAMPLE_TEST_RESULTSBJ_TREATMENT_2_PROTOCOLSPECIESSPECIES_CLEANUPSPECIES_DATA_FIXSS_BAK_CJ_FEB19_NEWST_JUDE_FIXED_HOST_DATAST_JUDE_INST_CODE_FIXSTAGING_CLINICAL_DATASTAGING_ST_JUDESTAGING_STUDY_SAMPLESTATES_PROVINCESSTG_ASSAY_PROPERTYSTG_ASSAYSSTG_BIO_SAMPLE_TREATMENTSTG_BIOLOGICAL_SAMPLESTG_BIOLOGICAL_SAMPLE_2_ASSAYSSTG_BIOSAMPLE_TREAT_2_REAGENTSTG_EXPERIMENTSTG_EXPERIMENT_RESULT_DATASTG_EXPERIMENT_SPECIESSTG_HUMAN_SURV_FLUTESTSTG_HUMAN_SURVEILLANCESTG_PROTOCOLSTG_REAGENTSTG_REAGENT_2_TREATMENTSTG_SUBJECT_2_ASSAYSSTG_SUBJECT_GROUPSTG_SUBJECT_ORG_OTHERINFOSTG_SUBJECT_ORGANISMSTG_SUBJECT_TREATMENTSTG_SURV_VIRAL_ISOLATESTG_SURV_VIRAL_ISOLATE_ERRORSSTG_SURVEILLANCE_SAMPLE

SURV_NF_ORGSTRAIN_MAP_4SURV_NF_ORGSTRAIN_MAP_4_TSURV_NF_ORGSTRAIN_MAP_MVSURV_NF_ORGSTRAIN_MAP_MV_TESTSURV_ORGSTRAIN_MAPSURV_ORGSTRAIN_MAP_1SURV_ORGSTRAIN_MAP_2SURV_ORGSTRAIN_MAP_MVSURV_ORGSTRAIN_MAP_NEWSURV_ORGSTRAIN_MAP_OLDSURV_PARAMETER_CATEGORYSURV_PARAMETERSSURV_POSTVISIT_MEDICATION_VSURV_PREVISIT_MEDICATION_VSURV_SAMPL_TST_DATA_DPCC_SV600SURV_SAMPLE_TEST_DATASURV_SAMPLE_TEST_DATA_20190123SURV_SAMPLE_TEST_DATA_JULY14SURV_SAMPLE_TEST_DATA_OLD_STJDSURV_SAMPLE_TEST_DATA_OLD_UCLASURV_SAMPLE_TEST_RESULTSURV_SAMPLE_TEST_RESULT_JULY14SURV_SBJ_OTH_INFO_MAPPINGSURV_TEXT_IDX_MSTSURV_VIRAL_ISOLATESURV_VIRAL_ISOLATE_FLU_TESTSURV_VIRAL_ISOLATE_SEROLOGYSURVEILLANCE_DIAGNOSIS_VSURVEILLANCE_MEDICAL_HISTORY_VSURVEILLANCE_ORGSTRAIN_MAPSURVEILLANCE_SPECIESSURVEILLANCE_SYMPTOMS_VSURVEILLANCE_VACCINATION_VTEST_ANIMALTEST_TYPE_MAPPINGUSAFSAM_IRD_DATA_LOADUSAFSAM_IRD_DATA_LOAD_BEF_CVALID_STATESVERIFIED_AVIAN_SPECIESVIRUSVIRUS_BKUP_20110506VIRUS_DPCC_SV600VIRUS_OLD_ST_JUDEVIRUS_OLD_UCLAZIP_TO_GEOLOCATION

Database: CSULOWAY HF_ANALYSIS_WORKFLOW_BKHF_ASSAY_BKHF_BIOSAMPLE_BKHF_BIOSET_AUTO_CURATION_BKHF_BIOSET_MANUAL_CURATION_BKHF_BIOSET_METADATA_BKHF_BM_ASSAY_LINK_BKHF_BM_DPE_LINK_BKHF_COHORT_LINK_BKHF_COHORT_LIST_BK

HF_CRITERIA_LINK_BKHF_CRITERION_BKHF_DATA_PROCESS_EVENT_BKHF_DETECTION_TECHNIQUE_BKHF_DISEASE_COURSE_STAGE_BKHF_DISEASE_LIST_BKHF_DPE_ASSAY_TREATMENT_LINK_BKHF_DPE_LINK_BKHF_EXPERIMENT_BKHF_EXT_REPOSITORY_LIST_BK

HF_PROTOCOL_BKHF_PROTOCOL_LINK_BKHF_REAGENT_BKHF_SAMPLING_EVENT_BKHF_STUDY_BKHF_SUBJECT_ASSESSMENT_BKHF_SUBJECT_BKHF_TRAVERSE_EVENTS_BKHF_TREATMENT_AGENT_BKHF_TREATMENT_EVENT_BK

Database: CTXSYS CTX_ALEXER_DICTS CTX_USER_INDEX_PARTITIONS DR$ONLINE_Pending

June 21, 2019 16 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: CTXSYS CTX_AUTO_OPTIMIZE_INDEXESCTX_AUTO_OPTIMIZE_STATUSCTX_CLASSESCTX_EXTRACT_POLICIESCTX_EXTRACT_POLICY_VALUESCTX_FILTER_BY_COLUMNSCTX_FILTER_CACHE_STATISTICSCTX_INDEX_ERRORSCTX_INDEX_OBJECTSCTX_INDEX_PARTITIONSCTX_INDEX_SECTIONSCTX_INDEX_SET_INDEXESCTX_INDEX_SETSCTX_INDEX_SUB_LEXER_VALUESCTX_INDEX_SUB_LEXERSCTX_INDEX_VALUESCTX_INDEXESCTX_OBJECT_ATTRIBUTE_LOVCTX_OBJECT_ATTRIBUTESCTX_OBJECTSCTX_ORDER_BY_COLUMNSCTX_PARAMETERSCTX_PendingCTX_PREFERENCE_VALUESCTX_PREFERENCESCTX_SECTION_GROUPSCTX_SECTIONSCTX_SQESCTX_STOPLISTSCTX_STOPWORDSCTX_SUB_LEXERSCTX_THES_PHRASESCTX_THESAURICTX_TRACE_VALUESCTX_USER_ALEXER_DICTSCTX_USER_AUTO_OPTIMIZE_INDEXESCTX_USER_EXTRACT_POLICIESCTX_USER_EXTRACT_POLICY_VALUESCTX_USER_EXTRACT_RULESCTX_USER_EXTRACT_STOP_ENTITIESCTX_USER_FILTER_BY_COLUMNSCTX_USER_INDEX_ERRORSCTX_USER_INDEX_OBJECTS

CTX_USER_INDEX_SECTIONSCTX_USER_INDEX_SET_INDEXESCTX_USER_INDEX_SETSCTX_USER_INDEX_SUB_LEXER_VALSCTX_USER_INDEX_SUB_LEXERSCTX_USER_INDEX_VALUESCTX_USER_INDEXESCTX_USER_ORDER_BY_COLUMNSCTX_USER_PendingCTX_USER_PREFERENCE_VALUESCTX_USER_PREFERENCESCTX_USER_SECTION_GROUPSCTX_USER_SECTIONSCTX_USER_SESSION_SQESCTX_USER_SQESCTX_USER_STOPLISTSCTX_USER_STOPWORDSCTX_USER_SUB_LEXERSCTX_USER_THES_PHRASESCTX_USER_THESAURICTX_VERSIONDR$ACTIVELOGSDR$AUTOOPTDR$CLASSDR$DBODR$DELETEDR$DICTIONARYDR$FEATURE_USEDDR$FREQTOKSDR$IDX_DICTIONARIESDR$INDEXDR$INDEX_CDI_COLUMNDR$INDEX_ERRORDR$INDEX_OBJECTDR$INDEX_PARTITIONDR$INDEX_SETDR$INDEX_SET_INDEXDR$INDEX_VALUEDR$NUMBER_SEQUENCEDR$NVTABDR$OBJECTDR$OBJECT_ATTRIBUTEDR$OBJECT_ATTRIBUTE_LOV

DR$PARALLELDR$PARAMETERDR$PendingDR$POLICY_TABDR$PREFERENCEDR$PREFERENCE_VALUEDR$SDATA_UPDATEDR$SECTIONDR$SECTION_ATTRIBUTEDR$SECTION_GROUPDR$SECTION_GROUP_ATTRIBUTEDR$SLOWQRYSDR$SQEDR$STATSDR$STOPLISTDR$STOPWORDDR$SUB_LEXERDR$THSDR$THS_BTDR$THS_FPHRASEDR$THS_PHRASEDR$TREEDR$UNINDEXEDDR$USER_EXTRACT_ENTDICTDR$USER_EXTRACT_RULEDR$USER_EXTRACT_STOP_ENTITYDR$USER_EXTRACT_TKDICTDR$WAITINGDRV$AUTOOPTDRV$DELETEDRV$DELETE2DRV$ONLINE_PendingDRV$PendingDRV$SDATA_UPDATEDRV$SDATA_UPDATE2DRV$TREEDRV$UNINDEXEDDRV$UNINDEXED2DRV$USER_EXTRACT_ENTDICTDRV$USER_EXTRACT_RULEDRV$USER_EXTRACT_STOP_ENTITYDRV$USER_EXTRACT_TKDICTDRV$WAITING

Database: DBSNMP BSLN_BASELINESBSLN_METRIC_DEFAULTSBSLN_STATISTICSBSLN_THRESHOLD_PARAMSBSLN_TIMEGROUPSMGMT_BASELINEMGMT_BASELINE_SQLMGMT_BSLN_BASELINESMGMT_BSLN_DATASOURCES

MGMT_BSLN_INTERVALSMGMT_BSLN_METRICSMGMT_BSLN_STATISTICSMGMT_BSLN_THRESHOLD_PARMSMGMT_CAPTUREMGMT_CAPTURE_SQLMGMT_DB_FEATURE_LOGMGMT_DB_FILE_GTTMGMT_DB_SIZE_GTT

MGMT_HISTORYMGMT_HISTORY_SQLMGMT_LATESTMGMT_LATEST_SQLMGMT_RESPONSE_BASELINEMGMT_RESPONSE_CONFIGMGMT_SNAPSHOTMGMT_SNAPSHOT_SQLMGMT_TEMPT_SQL

Database: DVSYS AUDIT_TRAIL$CODE$CODE_T$CODE_T$_TEMPCOMMAND_RULE$

DV$FACTORDV$FACTOR_LINKDV$FACTOR_TYPEDV$IDENTITYDV$IDENTITY_MAP

KU$_DV_FACTOR_TYPE_VIEWKU$_DV_FACTOR_VIEWKU$_DV_IDENTITY_MAP_VIEWKU$_DV_IDENTITY_VIEWKU$_DV_INDEX_FUNC_V

June 21, 2019 17 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: DVSYS CONFIG$DBA_DV_AUTHDBA_DV_CODEDBA_DV_COMMAND_RULEDBA_DV_COMMAND_RULE_IDDBA_DV_DATAPUMP_AUTHDBA_DV_DDL_AUTHDBA_DV_DEBUG_CONNECT_AUTHDBA_DV_DIAGNOSTIC_AUTHDBA_DV_DICTIONARY_ACCTSDBA_DV_FACTORDBA_DV_FACTOR_LINKDBA_DV_FACTOR_TYPEDBA_DV_IDENTITYDBA_DV_IDENTITY_MAPDBA_DV_INDEX_FUNCTIONDBA_DV_JOB_AUTHDBA_DV_MAC_POLICYDBA_DV_MAC_POLICY_FACTORDBA_DV_MAINTENANCE_AUTHDBA_DV_ORADEBUGDBA_DV_PATCH_ADMIN_AUDITDBA_DV_POLICYDBA_DV_POLICY_LABELDBA_DV_POLICY_OBJECTDBA_DV_POLICY_OWNERDBA_DV_PREPROCESSOR_AUTHDBA_DV_PROXY_AUTHDBA_DV_PUB_PRIVSDBA_DV_REALMDBA_DV_REALM_AUTHDBA_DV_REALM_OBJECTDBA_DV_ROLEDBA_DV_RULEDBA_DV_RULE_SETDBA_DV_RULE_SET_RULEDBA_DV_SIMULATION_LOGDBA_DV_STATUSDBA_DV_TTS_AUTHDBA_DV_USER_PRIVSDBA_DV_USER_PRIVS_ALLDV$CMDCONTEXTDV$CODEDV$COMMAND_RULEDV$CONFIGURATION_AUDITDV$ENFORCEMENT_AUDIT

DV$MAC_POLICYDV$MAC_POLICY_FACTORDV$OLS_POLICYDV$OLS_POLICY_LABELDV$OUTDV$POLICYDV$POLICY_LABELDV$REALMDV$REALM_AUTHDV$REALM_OBJECTDV$ROLEDV$RULEDV$RULE_SETDV$RULE_SET_RULEDV$SYS_GRANTEEDV$SYS_OBJECTDV$SYS_OBJECT_OWNERDV_ADMIN_GRANTEESDV_AUDIT_CLEANUP_GRANTEESDV_AUTH$DV_MONITOR_GRANTEESDV_OWNER_GRANTEESDV_SECANALYST_GRANTEESENFORCE$EVENT_STATUSFACTOR$FACTOR_LINK$FACTOR_T$FACTOR_T$_TEMPFACTOR_TYPE$FACTOR_TYPE_T$FACTOR_TYPE_T$_TEMPIDENTITY$IDENTITY_MAP$KU$_DV_ACCTS_VKU$_DV_AUTH_DDL_VKU$_DV_AUTH_DIAG_VKU$_DV_AUTH_DP_VKU$_DV_AUTH_JOB_VKU$_DV_AUTH_MAINT_VKU$_DV_AUTH_PREP_VKU$_DV_AUTH_PROXY_VKU$_DV_AUTH_TTS_VKU$_DV_COMM_RULE_ALTS_VKU$_DV_COMMAND_RULE_VIEWKU$_DV_FACTOR_LINK_VIEW

KU$_DV_ISR_VIEWKU$_DV_ISRM_VIEWKU$_DV_ORADEBUG_VKU$_DV_POLICY_OBJ_C_ALTS_VKU$_DV_POLICY_OBJ_C_VKU$_DV_POLICY_OBJ_R_VKU$_DV_POLICY_OWNER_VKU$_DV_POLICY_VKU$_DV_REALM_AUTH_VIEWKU$_DV_REALM_MEMBER_VIEWKU$_DV_REALM_VIEWKU$_DV_ROLE_VIEWKU$_DV_RULE_SET_MEMBER_VIEWKU$_DV_RULE_SET_VIEWKU$_DV_RULE_VIEWMAC_POLICY$MAC_POLICY_FACTOR$POLICY$POLICY_LABEL$POLICY_OBJECT$POLICY_OWNER$POLICY_OWNER_COMMAND_RULEPOLICY_OWNER_POLICYPOLICY_OWNER_POLICY_OBJECTPOLICY_OWNER_REALMPOLICY_OWNER_REALM_AUTHPOLICY_OWNER_REALM_OBJECTPOLICY_OWNER_RULEPOLICY_OWNER_RULE_SETPOLICY_OWNER_RULE_SET_RULEPOLICY_T$POLICY_T$_TEMPREALM$REALM_AUTH$REALM_OBJECT$REALM_T$REALM_T$_TEMPROLE$RULE$RULE_SET$RULE_SET_RULE$RULE_SET_T$RULE_SET_T$_TEMPRULE_T$RULE_T$_TEMPSIMULATION_LOG$

Database: GGBRC B_USER_SHARED_WORKBENCH_ITEMSB_WB_FOLDERB_WB_SAVED_ANALYSISB_WB_SAVED_SEARCHB_WB_UPLOADED_FILEB_WB_WORKING_SETB_WB_WORKING_SET_ITEMB_WORKBENCH_INFOBATCH_SUB_SMPL_VALIDATIONBATCH_SUBMISSIONSBATCH_SUBMIT_MESSAGESBATCH_SUBMIT_PROTEINSBATCH_SUBMIT_SAMPLESBATCH_SUBMIT_SEQUENCE_FEATURES

MONITOR_TOOL_STATUSNCBIPROTEINGI_FEATUREOPERONENTITY_MVPARENTFOLDERLOOKUPPIPELINE_TICKETPROTEINGI_IDPROTEINID_GI_JAN13RAW_SEQ_FEATURESRAW_SEQ_FEATURES_BKREAD_WRITE_USER_SPACEREAGANT_REQUESTSVFT_REF_TBL_BKUPSVFT_REFERENCE_TABLESVFT_REFERENCE_TABLE_B_MAR14

WB_MISSING_ITEM_IDWB_MISSING_ITEM_ID_AF_MAPPINGWB_MISSING_ITEM_ID_AFTERFIXWB_MISSING_ITEM_ID_ALLWB_MISSING_ITEM_ID_ALL_PROWB_MISSING_ITEM_ID_BEF_MAPWB_MISSING_ITEM_ID_FINALWB_MISSING_ITEM_ID_FINAL_2_DELWB_MISSING_ITEM_ID_MAR13WB_MISSING_ITEM_ID_NEWWB_MISSING_ITEM_ID_NOMAT_DELWB_MISSING_ITEM_ID_OLDWB_SAVED_ANALYSISWB_SAVED_ANALYSIS_MLU

June 21, 2019 18 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: GGBRC BATCH_SUBMIT_SEQUENCESCDSSEQCDSSEQ2CLINICAL_METADATA_REQUESTCOLLABORATOR_GROUPCOLLABORATOR_GROUP_BKCOMPUTE_RUNCOMPUTE_TOOLDELETION_FIRST_NEED_MAP_UPDATEDELETION_MAPPING_LOOKUP_ALLDELETION_MAPPING_LOOKUP_ALL_1DELETION_MAPPING_LOOPUP_MAR13DELETION_NEEDTO_MAPPINGEMAIL_REQUESTFOLDER_PARENT_MAPPINGFOLDER_WORKBENCH_ITEMSGBROWSECONFIGURATIONGBROWSECONFIGURATION_TESTHOST_STUDY_SAMPLE_COMBOMAT_ALL_GI_BEFORE_ANY_DELETIONMONITOR_CIPRES_TOOL_STATUS

SVFT_REFERENCE_TABLE_BKSVFT_REFERENCE_TABLE_TESTDBUSAGE_DOWNLOAD_MTRXUSAGE_METRICSUSAGEMETRICS_UPDUSER_ANALYSIS_RPT_METADATAUSER_COLLABORATOR_GROUPUSER_INFORMATIONUSER_INFORMATION_0521USER_REGISTRATIONUSER_ROLEUSER_ROLE_MATRIXUSER_SHARED_WORKBENCH_ITEMSWB_FASTA_DEFLINEWB_FOLDERWB_FOLDER_PATHWB_FOLDER_PATH2WB_IMPACT_DEL_NOT_MAPPINGWB_MAT_MISSING_BEFORE_SEPT12WB_MAT_MISSING_BEFORE_SEPT12_1WB_MISS_ITEM_ID_BEF_MAP_2_DEL

WB_SAVED_DISPLAY_COLUMNSWB_SAVED_SEARCHWB_TEMPWB_UPLOADED_FILEWB_UPLOADED_FILE2WB_WORKING_SETWB_WORKING_SET_ITEMWB_WORKING_SET_ITEM_BKWB_WORKING_SET_ITEM_BK011713WB_WORKING_SET_ITEM_BK011713_1WB_WORKING_SET_ITEM_BK1210WB_WORKING_SET_ITEM_BK1218WB_WORKING_SET_ITEM_BKUPWB_WORKING_SET_ITEM_BKUP_B4FIXWB_WORKING_SET_ITEM_MAR13WEB_USER_RESULTSWORKBENCH_FOLDER_MAPWORKBENCH_INFOWS_ITEM_DATA_FIX

Database: GSMADMIN_INTERNAL ALL_CHUNKSAQ$_CHANGE_LOG_QUEUE_TABLE_FAQ$_CHANGE_LOG_QUEUE_TABLE_GAQ$_CHANGE_LOG_QUEUE_TABLE_HAQ$_CHANGE_LOG_QUEUE_TABLE_IAQ$_CHANGE_LOG_QUEUE_TABLE_LAQ$_CHANGE_LOG_QUEUE_TABLE_SAQ$_CHANGE_LOG_QUEUE_TABLE_TAQ$CHANGE_LOG_QUEUE_TABLEAQ$CHANGE_LOG_QUEUE_TABLE_RAQ$CHANGE_LOG_QUEUE_TABLE_SBROKER_CONFIGSCATALOG_REQUESTSCHANGE_LOG_QUEUE_TABLECHUNK_LOC

CHUNKDATA_TMPCHUNKSCLOUDCREDENTIALDATABASEDATABASE_POOLDATABASE_POOL_ADMINDDLID$FILESGDSCTL_MESSAGESGLOBAL_TABLEGSMGSM_REQUESTSLOCAL_CHUNK_COLUMNSLOCAL_CHUNK_TYPES

LOCAL_CHUNKSPARTITION_SETREGIONSERVICESERVICE_PREFERRED_AVAILABLESHA_DATABASESSHARD_GROUPSHARD_SPACESHARD_TSSHARDKEY_COLUMNSTABLE_FAMILYTABLESPACE_SETTS_SET_TABLEVERIFY_HISTORYVNCR

Database: HZHAO AASEG2H1AASEQUENCE_BEFORE_FIXALL_NCBE_VIPR_GIAUTOCURATION_WH_012719_BBAD_REFERENCE_NOV16BEP_CORON_UPDATE_BKBIN$e5ozwaiPDSngUyUBAApTbg==$0BIN$eBynj4KJLm7gUyUBAAprwQ==$0BIN$gzzWJ/uHJWHgUyUBAAqbkw==$0BIN$gzzWJ/uJJWHgUyUBAAqbkw==$0BIN$ilf++uYPM3/gUyUBAAoGGw==$0BIN$iuj9XZygOzvgUyUBAAqtWA==$0BLAST_PROGRAMSBLAST_PROGRAMS_BK_OCT14BLAST_PROGRAMS_DEC13_BKBLAST_RESULT_FROM_MUL_GBBLAST_RESULT_FROM_MUL_GB_MAY19BLAST_RESULT_PART2_IMPACT_GENOMESBLAST_RESULT_UNIQ_IDBLAST_RESULTS_CHG_ID_CLOBBLAST_RESULTS_DELETED

DELETION_MAPPING_LOOKUP_ALL_BKDELETION_MAPPING_LOOPUP_BKDELETION_MAPTO_LIVINGDELETION_NUMBER_MAPPINGDELETION_SEQUENCE_DIFFDENGUE_FIX_AGE_DISPLAYDOTS_SIMI_RESULTS_NOEXIST_IDDOTS_SIMI_RESULTS_NOEXIST_ID_MAY19DR$FLU_STRAIN_SRCH_T1840$IDR$FLU_STRAIN_SRCH_T1840$KDR$FLU_STRAIN_SRCH_T1840$NDR$FLU_STRAIN_SRCH_T1840$REBOLAVIRUS_PROTEIN_MAY15EXPERIMENT_DESC_CURATION_TESTFEATURE_ANNO_BEF_UPDATEFEATURE_BEFORE_FIXFEATURE_DUP_MATFEATURE_MAT_FIX_BEFFIX_ANNO_SCOURCE_FEAIDFIX_CURATED_NONAVIAN_HOSTFIX_IEDB_PROTEINGI

MAT_VIPR_GENER_NOGENSYMB_PROD1MODULE_IEDB_ROLLEDUP_MV_TOSPNAACCESS_NOPROTEIN_SEQNAGENOMESEQUENCE_9943_BNAGENOMESEQUENCE_BEF_FIX_SENEW_ADD_PAX_FEATURENONFLU_DELETE_OCT18NONFLU_SF_VARIANTS_22262NONFLU_SF_VARIANTS_NEW_LOADNONFLU_UNIQUE_HOST_MAY13AF_FIXNONFLU_UNIQUE_HOST_MAY13BF_FIXOBS_BLAST_RESULTS_ID_MAY19OBS_BLAST_SUMMARY_ID_MAY19OBSOLETE_VIPR__FLU_MAY14OBSOLETE_VIPR_FLU_MAY14ORGANISMSTRAIN_ALLFAM_SEROTYPEORGSTRAIN_COUNTRY_MULORGSTRAIN_COUNTRY_MUL_NULLORGSTRAIN_HOST_MULORGSTRAIN_HOST_MUL_NULLORTHOLOG_TESTING

June 21, 2019 19 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: HZHAO BLAST_RESULTS_DELETED_1BLAST_RESULTS_DELETED_1_MAY19BLAST_RESULTS_DELETED_MAY19BLAST_RESULTS_ORIG_1BLAST_RESULTS_ORIG_2BLAST_SUMMARY_CHANGED_IDBRC_10590_BEF_1BRC_10590_BEF_2BRC_10590_ORGSTRAIN_BEF_1BRC_10590_ORGSTRAIN_BEF_2BRC_10768_PL_BEFBRC_10768_PL_MV_BEFBRC_11596BRC_11709_BEFOREBRC_11944_BEFOREBRC_12044_BEF_FIX_WHBRC_12044_BEF_FIX_WH_2BRC_12044_FIX_LISTBRC_12044_FIX_LIST_2BRC_8028_BEFORE_UPDATEBRC_8028_BEFORE_UPDATE_2BRC_8452_LISTBRC_8773_BEF_CHANGEBRC_8862_SOURCE1BRC_8862_SOURCE2BRC_8869_SOURCEBRC_8885_BEFORE_FIX1BRC_8885_FIX_SOURCEBRC_8885_FIX_SOURCE1BRC_8994_BEFORE_CHANGEBRC_9065_BEF_FIXBRC_9065_ERROR_DATABRC_9108_BEFORE_FIXBRC_9304_BEFORE_FIXBRC_9304_FEATURE_BEF_FIXBRC_9417BRC_9445_BEFBRC_9486_FIX_SOURCEBRC_9587_BEFOREBRC_9707_BEFORE_UPDATEBRC_9707_CURATED_HOSTBRC_9731_BEFOREBRC_9731_BEFORE_M2BRC12035_DELETEBRC7620_SOURCEBRC8453_ROLLBACKBRC9788_NAGENOMESEQUENCE_A_BEFBRC9788_NAGENOMESEQUENCE_BEFBRC9788_ORGANISMSTRAIN_A_BEFCEIRS_CODE_CONVERSION_11CEIRS_CODE_CONVERSION_JAN18CHECK_NASEQUENCE_UNIQCHECKING_SUBTYPE_RESULTSCLINICAL_METADATA_0509CLINICAL_METADATA_0512CLOB_TESTCLOB1COLLECTION_YEAR_FIX1COLLECTION_YEAR_FIX1_RUNCOLLECTION_YEAR_FIX2COLLECTION_YEAR_FIX2_RUNCOLLECTION_YEAR_WITH_CURAT_1COMPUTED_MAT_OCT18

FIX_ORGANISMSTRAINFIX_ORGANISMSTRAIN_NONFLUFIX_ORGANISMSTRAIN_NONFLU_STP2FIX_PROTEIN_LEN_AFTERFIX_PROTEIN_LEN_BEFOREFIX_PROTEINRELATION_SEPT16FIX_SEQFIX_STATE_ORGANISMSTRAIN_DATAFIXED_MAT_PEPTIDE_DELETE_BKFIXED_MAT_PEPTIDE_DELETE_BRCFLU_PROTEINNAME_BEFGENOID_FOR_ORGSTR_UPDATE_GOODGENOID_FOR_ORGSTRAIN_UPDATEGENOME_WRONG_CURATION_STATUSGENOSEQID_REPEATED_VLIDGENOSEQID_REPEATED_VLID_VER1IEDB_CNT_NEW_OLDIEDB_REFERENCE_JULY13IEDB_SFVT_ZIKAIEDB_SFVT_ZIKA_RESULTIMPACT_DOTS_IDIMPACT_GENO_ORG_DOTS_IDIMPACT_NEW_ORGSTRAINIDIMPACT_ORGSTRAIN_AFTERUPDATEIMPACT_ORGSTRAIN_AFTERUPDATE2IMPACT_ORGSTRAIN_BEFUPDATEIMPACT_ORGSTRAIN_NULLIFYUPDATEIMPACTED_ORGSTRAIN_BEFUPDATEINACTIVE_BLAST_RESULTS_IDINACTIVE_BLAST_RESULTS_ID_M19INACTIVE_BLAST_SUMMARY_IDINACTIVE_BLAST_SUMMARY_ID_MAY19INFLUENZA_ALL_OLDINVALID_ROWSISOELE_PREDIC_AUTO_BKISOELE_PREDIC_DUP_DEL_RECORDISOELECTRIC_PREDICTIONS_BKISOELECTRIC_PREDICTIONS_HTLABLE_TESTLABLE_TEST_IDMAT_12282017_TO_FIXMAT_ALL_GI_BEFORE_ANY_DELETIONMAT_COM_IN_DB_NOT_MATMAT_COM_IN_DB_NOT_MAT_OLDMAT_COM_IN_MAT_NOT_DBMAT_COM_IN_MAT_NOT_DB_OLDMAT_COM_NOT_COVER_DETAILMAT_COM_NOT_COVER_DETAIL_1MAT_COM_NOT_MATCHEDMAT_COM_NOT_MATCHED_NO_SBLMAT_COM_NOT_MATCHED_NO_SBL_OLDMAT_COMP_OTHER_DIFFMAT_COMP_SEQ_DIFFMAT_GENBANK_COMP_INNEWMATMAT_GENBANK_COMP_INVIPRMAT_GENBANK_COMP_NOTINNEWMATMAT_GENBANK_COMP_NOTINVIPRMAT_GENBANK_NOTCOMP_NCMAT_NEW_FIX1_LISTMAT_PEP_REMOVED_DETAILMAT_PEP_REMOVED_VIPRMAT_PEPTIDE_CALED_NASEQIDMAT_PEPTIDE_COMP_FIRST

PATTEN_TESTPDB_TEMPPFAM_DOMAIN_AUTO_BKPFAM_DOMAIN_DUP_DELETE_RECORDPFAM_OTH_FEA_DUP_DELETE_RECORDPFAM_OTHER_FEATURE_AUTO_BKPROD2_MISS_AASEQUENCEPROTEIN_BEFORE_FIXPROTEINDB_TEMPPROTEINGI_IDPROTEINID_FIXEDPROTEINID_GI_JAN13PROTEINRELATION_MV_DUPLIC_BPROTEINRELATION_MV_DUPLIC_CPROTEINRELATION_MV_DUPLIC_C_BKPROTEINRELATION_MV_DUPLIC_RMPUB_SYMBOLQUEST_SL_TEMP_EXPLAIN1REMOVE_AUTHOR_BRC12059SEG4H1_NTSEG6N1SEQUENCE_CURATE_RESULT_NEWSEQUENCE_OTHER_INFO_NEW_SESEQUENCE_OTHER_INFO_NEW_SE_ALLSEQUENCE_OTHERINFO_SEROTYPESQL_PROFILES_BRCPRD11_JULY17SQL_PROFILES_BRCPRD22SSGCID_VIPR_URLS_OLDSSTRING_SEARCH_BKSSTRING_SEARCH_OCT14STAGE_PROD1_GENE_COMPARESTAGE_PROD1_GENE_COMPARE_BEFSTAGE_PROD1_GENEPROD_COMPARESTG_MAP_PEPTIDE_NEW_NAALLSTH_MAP_PEPTIDE_NEW_NAALLSUPERSCRIPTSSUPERSCRIPTS1SURV_HOST_OTHER_INFO_BKSURV_PARAMETER_090712SV_EXPERIMENT_7942SV_EXPERIMENT_BRC9592_BEFSV_REAGENT_BK050313SVFT_REFERENCE_TABLE_BEFJUNE13TTABLENUMTABLETXTTEMPTEMP3TEMP4TESTTEST_NEW_SFTEXT_INDEX_TESTTTUPDATE_NAGENOMEVBRC_ANNOTATION_BEFORE_UPDATEVIPR_BLAST_FIX_MIGRATEVIPR_BLAST_FIX_MIGRATE_ALLVIPR_BLAST_FIX_MIGRATE_HTMLVIPR_BLAST_NO_MIGRATEDVIRUS_BEF_7668WB_NOTMAP_PROTEINIDWH_NEED_OBSOLETE_OCT18WH_NEED_OBSOLETE_OCT18_L

June 21, 2019 20 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: HZHAO DATA_SOURCE_090712DELETE_FEATURE_DEC11_2014_PRODDELETE_OBS_FEATURE_NOV16DELETE_OBS_GENOME_NOV16DELETED_PFAM_OTHER_FEATUREDELETION_FIRST_NEEDTO_MAPPING

MAT_PEPTIDE_COMP_SECONDMAT_PEPTIDE_DELETE_CHECKMAT_PEPTIDE_GB_NOT_COVERMAT_PEPTIDE_UPDATE_DETAILMAT_PEPTIDE_UPDATE_DETAIL_BRCMAT_SEQ_NOMATCH_DETAIL

WHO_UNMAPPED_STRAIN_IDWHO_UNMAPPED_STRAINSWHO_UNMAPPED_STRAINS_BKWHO_UNMAPPING_NASEQ

Database: LBACSYS ALL_SA_AUDIT_OPTIONSALL_SA_COMPARTMENTSALL_SA_DATA_LABELSALL_SA_GROUP_HIERARCHYALL_SA_GROUPSALL_SA_LABELSALL_SA_LEVELSALL_SA_POLICIESALL_SA_PROG_PRIVSALL_SA_PROGRAMSALL_SA_SCHEMA_POLICIESALL_SA_TABLE_POLICIESALL_SA_USER_COMPARTMENTSALL_SA_USER_GROUPSALL_SA_USER_LABELSALL_SA_USER_LEVELSALL_SA_USER_PRIVSALL_SA_USERSCDB_LBAC_DATA_LABELSCDB_LBAC_LABEL_TAGSCDB_LBAC_LABELSCDB_LBAC_POLICIESCDB_LBAC_SCHEMA_POLICIESCDB_LBAC_TABLE_POLICIESCDB_OLS_AUDIT_OPTIONSCDB_OLS_STATUSCDB_OLS_USERSCDB_SA_AUDIT_OPTIONSCDB_SA_COMPARTMENTSCDB_SA_DATA_LABELSCDB_SA_GROUP_HIERARCHYCDB_SA_GROUPSCDB_SA_LABELS

CDB_SA_LEVELSCDB_SA_POLICIESCDB_SA_PROG_PRIVSCDB_SA_PROGRAMSCDB_SA_SCHEMA_POLICIESCDB_SA_TABLE_POLICIESCDB_SA_USER_COMPARTMENTSCDB_SA_USER_GROUPSCDB_SA_USER_LABELSCDB_SA_USER_LEVELSCDB_SA_USER_PRIVSCDB_SA_USERSDBA_LBAC_DATA_LABELSDBA_LBAC_LABEL_TAGSDBA_LBAC_LABELSDBA_LBAC_POLICIESDBA_LBAC_SCHEMA_POLICIESDBA_LBAC_TABLE_POLICIESDBA_OLS_AUDIT_OPTIONSDBA_OLS_STATUSDBA_OLS_USERSDBA_SA_AUDIT_OPTIONSDBA_SA_COMPARTMENTSDBA_SA_DATA_LABELSDBA_SA_GROUP_HIERARCHYDBA_SA_GROUPSDBA_SA_LABELSDBA_SA_LEVELSDBA_SA_POLICIESDBA_SA_PROG_PRIVSDBA_SA_PROGRAMSDBA_SA_SCHEMA_POLICIESDBA_SA_TABLE_POLICIES

DBA_SA_USER_COMPARTMENTSDBA_SA_USER_GROUPSDBA_SA_USER_LABELSDBA_SA_USER_LEVELSDBA_SA_USER_PRIVSDBA_SA_USERSOLS$AUDITOLS$AUDIT_ACTIONSOLS$COMPARTMENTSOLS$DIP_DEBUGOLS$DIP_EVENTSOLS$GROUPSOLS$INSTALLATIONSOLS$LABOLS$LEVELSOLS$POLOLS$POLICY_ADMINOLS$POLICY_COLUMNSOLS$POLSOLS$POLTOLS$PROFILEOLS$PROFILESOLS$PROGOLS$PROPSOLS$SESSINFOOLS$TRUSTED_PROGSOLS$USEROLS$USER_COMPARTMENTSOLS$USER_GROUPSOLS$USER_LEVELSSA$ADMINSA$POLUSER_SA_SESSION

Database: MDSYS ALL_ANNOTATION_TEXT_METADATAALL_GEOMETRY_COLUMNSALL_SDO_3DTHEMESALL_SDO_3DTXFMSALL_SDO_ANIMATIONSALL_SDO_CACHED_MAPSALL_SDO_CSW_SERVICE_INFOALL_SDO_GEOM_METADATAALL_SDO_GEOR_SYSDATAALL_SDO_INDEX_HISTOGRAMALL_SDO_INDEX_INFOALL_SDO_INDEX_METADATAALL_SDO_LIGHTSOURCESALL_SDO_LRS_METADATAALL_SDO_MAPSALL_SDO_NETWORK_CONSTRAINTSALL_SDO_NETWORK_FEATUREALL_SDO_NETWORK_HISTORIES

ROWTOKENMAP$ROWTOKENMAP_T$SDO_3DTHEMES_TABLESDO_3DTXFMS_TABLESDO_ANGLE_UNITSSDO_ANIMATIONS_TABLESDO_ANNOTATION_TEXT_METADATASDO_AREA_UNITSSDO_AVAILABLE_ELEM_OPSSDO_AVAILABLE_NON_ELEM_OPSSDO_AVAILABLE_OPSSDO_CACHED_MAPS_TABLESDO_COORD_AXESSDO_COORD_AXIS_NAMESSDO_COORD_OP_METHODSSDO_COORD_OP_PARAM_USESDO_COORD_OP_PARAM_VALSSDO_COORD_OP_PARAMS

SDO_RELATEMASK_TABLESDO_SCENES_TABLESDO_SRIDS_BY_URNSDO_SRIDS_BY_URN_PATTERNSDO_ST_TOLERANCESDO_STYLES_TABLESDO_THEMES_TABLESDO_TIN_BLK_TABLESDO_TIN_PC_SEQSDO_TIN_PC_SYSDATA_TABLESDO_TOPO_DATA$SDO_TOPO_MAPSSDO_TOPO_METADATA_TABLESDO_TOPO_RELATION_DATASDO_TOPO_TRANSACT_DATASDO_TOPO_TRANSACT_DATA$SDO_TXN_IDX_EXP_UPD_RGNSDO_TXN_JOURNAL

June 21, 2019 21 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: MDSYS ALL_SDO_NETWORK_JAVA_OBJECTSALL_SDO_NETWORK_LOCKS_WMALL_SDO_NETWORK_METADATAALL_SDO_NETWORK_TIMESTAMPSALL_SDO_NETWORK_USER_DATAALL_SDO_NFE_MODEL_FTLAYER_RELALL_SDO_NFE_MODEL_METADATAALL_SDO_NFE_MODEL_WORKSPACEALL_SDO_SCENESALL_SDO_STYLESALL_SDO_THEMESALL_SDO_TIN_PC_SYSDATAALL_SDO_TOPO_INFOALL_SDO_TOPO_METADATAALL_SDO_VIEWFRAMESCS_SRSCS_SRS_ORIGCSW_CAPABILITIESINFO$CSW_DOMAININFO$CSW_HARVESTMETADATA$CSW_PLUGIN_MAP$CSW_RECORD_TYPES$CSW_RECORDDOMAINUPDATED$CSW_RECORDTABLEMDUPDATED$CSW_RECORDTABLEUPDATED$CSW_RECORDVIEWMAP$CSW_RTXSDINFO$CSW_SERVICE_INFOCSW_TRG_TABLE_TEMP$CURRENTSESSIONTOKENMAP$CURRENTSESSIONTOKENMAP_T$DBA_GEOMETRY_COLUMNSDBA_SDO_MAPSDBA_SDO_STYLESDBA_SDO_THEMESFINAL_PARTITIONGEODETIC_SRIDSMD$RELATEMY_SDO_INDEX_METADATANDM_FINAL_PARTITIONNDM_PARTITION_TMP_2NDM_PARTITION_TMP_3NTV2_XML_DATAOGIS_GEOMETRY_COLUMNSOGIS_SPATIAL_REFERENCE_SYSTEMSOLS_DIR_BUSINESS_CHAINSOLS_DIR_BUSINESSESOLS_DIR_CATEGORIESOLS_DIR_CATEGORIZATIONSOLS_DIR_CATEGORY_TYPESOLS_DIR_SYNONYMSOPENLS_CLASSIFICATIONSOPENLS_NAMESPACESOPENLS_NODESOPENLS_XPATHSOPENLSSERVICESPARTITION_TMP_2PARTITION_TMP_3RDF_PARAM$RDF_PARAM$_TBLRDF_PARAMETER

SDO_COORD_OP_PATHSSDO_COORD_OPSSDO_COORD_REF_SYSSDO_COORD_REF_SYSTEMSDO_COORD_SYSSDO_CRS_COMPOUNDSDO_CRS_ENGINEERINGSDO_CRS_GEOCENTRICSDO_CRS_GEOGRAPHIC_PLUS_HEIGHTSDO_CRS_GEOGRAPHIC2DSDO_CRS_GEOGRAPHIC3DSDO_CRS_PROJECTEDSDO_CRS_VERTICALSDO_CS_CONTEXT_INFORMATIONSDO_CS_SRSSDO_DATUM_ENGINEERINGSDO_DATUM_GEODETICSDO_DATUM_VERTICALSDO_DATUMSSDO_DATUMS_OLD_FORMATSDO_DATUMS_OLD_SNAPSHOTSDO_DIST_UNITSSDO_ELLIPSOIDSSDO_ELLIPSOIDS_OLD_FORMATSDO_ELLIPSOIDS_OLD_SNAPSHOTSDO_FEATURE_USAGESDO_GEOM_METADATA_TABLESDO_GEOR_DDL__TABLE$$SDO_GEOR_PLUGIN_REGISTRYSDO_GEOR_SYSDATA_TABLESDO_GEOR_XMLSCHEMA_TABLESDO_GR_MOSAIC_0SDO_GR_MOSAIC_1SDO_GR_MOSAIC_2SDO_GR_MOSAIC_3SDO_GR_MOSAIC_CBSDO_GR_PARALLELSDO_GR_RDT_1SDO_GR_RDT_2SDO_INDEX_AGGREGATES_TABLESDO_INDEX_HISTOGRAM_TABLESDO_INDEX_METADATA_TABLESDO_LIGHTSOURCES_TABLESDO_LRS_METADATA_TABLESDO_MAPS_TABLESDO_NETWORK_CONSTRAINTSSDO_NETWORK_FEATURESDO_NETWORK_HISTORIESSDO_NETWORK_LOCKS_WMSDO_NETWORK_METADATA_TABLESDO_NETWORK_TIMESTAMPSSDO_NETWORK_USER_DATASDO_NFE_MODEL_FTLAYER_RELSDO_NFE_MODEL_METADATA_TABLESDO_NFE_MODEL_WORKSPACESDO_PC_BLK_TABLESDO_PREFERRED_OPS_SYSTEMSDO_PREFERRED_OPS_USERSDO_PRIME_MERIDIANSSDO_PROJECTIONS_OLD_FORMATSDO_PROJECTIONS_OLD_SNAPSHOT

SDO_UNITS_OF_MEASURESDO_VIEWFRAMES_TABLESDO_WFS_LOCAL_TXNSSDO_WS_CONFERENCESDO_WS_CONFERENCE_PARTICIPANTSSDO_WS_CONFERENCE_RESULTSSDO_XML_SCHEMASSDO_XSD_TABLESRSNAMESPACE_TABLETOKENSESSIONMAP$TOKENSESSIONMAP_T$USER_ANNOTATION_TEXT_METADATAUSER_GEOMETRY_COLUMNSUSER_SDO_3DTHEMESUSER_SDO_3DTXFMSUSER_SDO_ANIMATIONSUSER_SDO_CACHED_MAPSUSER_SDO_CSW_SERVICE_INFOUSER_SDO_GEOM_METADATAUSER_SDO_GEOR_SYSDATAUSER_SDO_INDEX_HISTOGRAMUSER_SDO_INDEX_INFOUSER_SDO_INDEX_METADATAUSER_SDO_LIGHTSOURCESUSER_SDO_LRS_METADATAUSER_SDO_MAPSUSER_SDO_NETWORK_CONSTRAINTSUSER_SDO_NETWORK_FEATUREUSER_SDO_NETWORK_HISTORIESUSER_SDO_NETWORK_JAVA_OBJECTSUSER_SDO_NETWORK_LOCKS_WMUSER_SDO_NETWORK_METADATAUSER_SDO_NETWORK_TIMESTAMPSUSER_SDO_NETWORK_USER_DATAUSER_SDO_NFE_MODEL_FTLAYER_RELUSER_SDO_NFE_MODEL_METADATAUSER_SDO_NFE_MODEL_WORKSPACEUSER_SDO_SCENESUSER_SDO_STYLESUSER_SDO_THEMESUSER_SDO_TIN_PC_SYSDATAUSER_SDO_TOPO_INFOUSER_SDO_TOPO_METADATAUSER_SDO_VIEWFRAMESWFS_CAPABILITIESINFO$WFS_FEATUREINSTANCEMETADATA$WFS_FEATURETABLEMDUPDATED$WFS_FEATURETABLEUPDATED$WFS_FEATURETYPE$WFS_FEATURETYPEATTRS$WFS_FEATURETYPECOMPLEXTAGS$WFS_FEATURETYPENESTEDSDOS$WFS_FEATURETYPESIMPLETAGATTRS$WFS_FEATURETYPETAGS$WFS_FEATURETYPEXMLCOLINFO$WFS_FTTYPECOMPLEXTAGATTRS$WFS_FTXSDINFO$WFS_PROC_MAP$WFS_SRS$WFS_TRG_TABLE_TEMP$

June 21, 2019 22 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: ORDDATA ORDDCM_ANON_ACTION_TYPESORDDCM_ANON_ATTRSORDDCM_ANON_ATTRS_TMPORDDCM_ANON_ATTRS_USRORDDCM_ANON_ATTRS_WRKORDDCM_ANON_RULE_TYPESORDDCM_ANON_RULESORDDCM_ANON_RULES_TMPORDDCM_ANON_RULES_USRORDDCM_ANON_RULES_WRKORDDCM_CONFORMANCE_VLD_MSGSORDDCM_CONSTRAINT_NAMESORDDCM_CT_ACTIONORDDCM_CT_ACTION_TMPORDDCM_CT_ACTION_USRORDDCM_CT_ACTION_WRKORDDCM_CT_DAREFSORDDCM_CT_DAREFS_TMPORDDCM_CT_DAREFS_USRORDDCM_CT_DAREFS_WRKORDDCM_CT_LOCATORPATHSORDDCM_CT_LOCATORPATHS_TMPORDDCM_CT_LOCATORPATHS_USRORDDCM_CT_LOCATORPATHS_WRKORDDCM_CT_MACRO_DEPORDDCM_CT_MACRO_DEP_WRKORDDCM_CT_MACRO_PARORDDCM_CT_MACRO_PAR_WRKORDDCM_CT_PREDORDDCM_CT_PRED_OPRDORDDCM_CT_PRED_OPRD_TMPORDDCM_CT_PRED_OPRD_USRORDDCM_CT_PRED_OPRD_WRKORDDCM_CT_PRED_PARORDDCM_CT_PRED_PAR_TMPORDDCM_CT_PRED_PAR_USRORDDCM_CT_PRED_PAR_WRKORDDCM_CT_PRED_SET

ORDDCM_CT_PRED_SET_TMPORDDCM_CT_PRED_SET_USRORDDCM_CT_PRED_SET_WRKORDDCM_CT_PRED_TMPORDDCM_CT_PRED_USRORDDCM_CT_PRED_WRKORDDCM_CT_VLD_MSGORDDCM_DATA_MODELORDDCM_DATA_MODEL_WRKORDDCM_DBRELEASE_DOCSORDDCM_DICT_ATTRSORDDCM_DICT_ATTRS_TMPORDDCM_DICT_ATTRS_USRORDDCM_DICT_ATTRS_WRKORDDCM_DOC_REFSORDDCM_DOC_REFS_TMPORDDCM_DOC_REFS_USRORDDCM_DOC_REFS_WRKORDDCM_DOC_TYPESORDDCM_DOCSORDDCM_DOCS_TMPORDDCM_DOCS_USRORDDCM_DOCS_WRKORDDCM_DOCUMENT_REFSORDDCM_DOCUMENT_TYPESORDDCM_DOCUMENTSORDDCM_INSTALL_DOCSORDDCM_INTERNAL_TAGSORDDCM_MAPPED_PATHSORDDCM_MAPPED_PATHS_TMPORDDCM_MAPPED_PATHS_USRORDDCM_MAPPED_PATHS_WRKORDDCM_MAPPING_DOCSORDDCM_MAPPING_DOCS_TMPORDDCM_MAPPING_DOCS_USRORDDCM_MAPPING_DOCS_WRKORDDCM_PR_ADMIN_DOCS_WRKORDDCM_PR_ATTR_CONFIG_WRK

ORDDCM_PR_DICOM_CONFIG_WRKORDDCM_PR_PRVW_CONFIG_WRKORDDCM_PR_SPECIAL_TAG_WRKORDDCM_PR_VERSION_CONFIG_WRKORDDCM_PR_WADO_CONFIG_WRKORDDCM_PR_XML_CONFIG_WRKORDDCM_PREFS_LOOKUPORDDCM_PROTOCOL_ADMIN_DOCSORDDCM_PROTOCOL_ATTR_CONFIGORDDCM_PROTOCOL_DICOM_CONFIGORDDCM_PROTOCOL_METADATAORDDCM_PROTOCOL_PRVW_CONFIGORDDCM_PROTOCOL_SPECIAL_TAGORDDCM_PROTOCOL_VERSION_CONFIGORDDCM_PROTOCOL_WADO_CONFIGORDDCM_PROTOCOL_XML_CONFIGORDDCM_PRV_ATTRSORDDCM_PRV_ATTRS_TMPORDDCM_PRV_ATTRS_USRORDDCM_PRV_ATTRS_WRKORDDCM_RT_PREF_PARAMSORDDCM_RT_PREF_PARAMS_TMPORDDCM_RT_PREF_PARAMS_USRORDDCM_RT_PREF_PARAMS_WRKORDDCM_STD_ATTRSORDDCM_STD_ATTRS_TMPORDDCM_STD_ATTRS_USRORDDCM_STD_ATTRS_WRKORDDCM_STORED_TAGSORDDCM_STORED_TAGS_TMPORDDCM_STORED_TAGS_USRORDDCM_STORED_TAGS_WRKORDDCM_UID_DEFSORDDCM_UID_DEFS_TMPORDDCM_UID_DEFS_USRORDDCM_UID_DEFS_WRKORDDCM_VR_DT_MAP

Database: SPOTLIGHT G_AUTHORSG_BOOK_AUTHORSG_BOOKSG_CARTG_CUSTOMERSG_LINE_ITEMSG_ORDERSQUEST_PPCM_ADVISORYQUEST_PPCM_ADVISORY_SNAPQUEST_PPCM_ANAL_EXCLUSIONQUEST_PPCM_ANAL_RESULTQUEST_PPCM_ANAL_RESULT_SEGQUEST_PPCM_ANAL_TREND_CHANGEQUEST_PPCM_CUSTOM_SQLQUEST_PPCM_DATA_EXCLUSIONQUEST_PPCM_FUZZY_FUNC_RANGEQUEST_PPCM_FUZZY_FUNCTIONQUEST_PPCM_INSTANCEQUEST_PPCM_IOSTATQUEST_PPCM_IOSTAT_SNAPQUEST_PPCM_PARAMETERSQUEST_PPCM_PEAK_ACTIVITY

QUEST_PPCM_SEG_EQ_COEFFQUEST_PPCM_SEG_OMIT_DATAQUEST_PPCM_SNAPSHOTQUEST_PPCM_SNAPSHOT_CATEGORIESQUEST_PPCM_SQL_CRITERIAQUEST_PPCM_SQL_SNAPSHOTQUEST_PPCM_SQL_TEXTQUEST_PPCM_STATISTICQUEST_PPCM_STATISTIC_SNAPQUEST_PPCM_TCA_EXCLUSIONQUEST_PPCM_TIME_SNAPQUEST_PPCM_TIMED_STATISTICQUEST_PPCM_TREND_CHANGEQUEST_PPCM_VERSIONQUEST_SOO_ARCHIVE_DESTQUEST_SOO_AT_APPNAMEQUEST_SOO_AT_EXECUTION_PLANQUEST_SOO_AT_EXECUTION_PLAN_VQUEST_SOO_AT_OPERATIONSQUEST_SOO_AT_PARSE_CURSORQUEST_SOO_AT_PARSE_ERRORQUEST_SOO_AT_PARSE_WAITS

QUEST_SOO_AT_SQL_BINDSQUEST_SOO_AT_SQL_EXEC_ERRORQUEST_SOO_AT_SQL_EXECUTIONSQUEST_SOO_AT_SQL_FETCHQUEST_SOO_AT_SQL_STATEMENTQUEST_SOO_AT_SQL_STMT_PIECESQUEST_SOO_AT_SQL_WAITSQUEST_SOO_AT_SQL_WAITS_VQUEST_SOO_AT_TRACE_FILEQUEST_SOO_AT_WAIT_NAMESQUEST_SOO_BUFFER_BUSYQUEST_SOO_EVENT_CATEGORIESQUEST_SOO_LOCK_TREEQUEST_SOO_PARAMETERSQUEST_SOO_PARSE_TIME_TRACKQUEST_SOO_PLAN_TABLEQUEST_SOO_SB_BUFFER_BUSYQUEST_SOO_SB_EVENTQUEST_SOO_SB_IO_STATQUEST_SOO_SCHEMA_VERSIONSQUEST_SOO_TRACE_ENTRIESQUEST_SOO_VERSION

June 21, 2019 23 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: SPOTLIGHT QUEST_PPCM_PEAK_TIMES QUEST_SOO_AT_SESSION_ID

Database: TI_USER DR$FLU_PROT_SRCH_QK_TX_IDX01$IDR$FLU_PROT_SRCH_QK_TX_IDX01$KDR$FLU_PROT_SRCH_QK_TX_IDX01$NDR$FLU_PROT_SRCH_QK_TX_IDX01$PDR$FLU_PROT_SRCH_QK_TX_IDX01$RDR$FLU_PROT_SRCH_QK_TX_IDX01$SDR$FLU_PROT_SRCH_QK_TX_IDX01$UDR$FLU_PROT_SRCH_QK_TX_IDX02$IDR$FLU_PROT_SRCH_QK_TX_IDX02$KDR$FLU_PROT_SRCH_QK_TX_IDX02$NDR$FLU_PROT_SRCH_QK_TX_IDX02$PDR$FLU_PROT_SRCH_QK_TX_IDX02$RDR$FLU_PROT_SRCH_QK_TX_IDX02$SDR$FLU_PROT_SRCH_QK_TX_IDX02$UDR$FLU_SEGM_SRCH_TXT_IDX01$IDR$FLU_SEGM_SRCH_TXT_IDX01$KDR$FLU_SEGM_SRCH_TXT_IDX01$NDR$FLU_SEGM_SRCH_TXT_IDX01$PDR$FLU_SEGM_SRCH_TXT_IDX01$RDR$FLU_SEGM_SRCH_TXT_IDX01$SDR$FLU_SEGM_SRCH_TXT_IDX01$UDR$FLU_SEGM_SRCH_TXT_IDX02$IDR$FLU_SEGM_SRCH_TXT_IDX02$KDR$FLU_SEGM_SRCH_TXT_IDX02$NDR$FLU_SEGM_SRCH_TXT_IDX02$PDR$FLU_SEGM_SRCH_TXT_IDX02$RDR$FLU_SEGM_SRCH_TXT_IDX02$SDR$FLU_SEGM_SRCH_TXT_IDX02$UDR$FLU_STRAIN_SRCH_TXT_IDX01$IDR$FLU_STRAIN_SRCH_TXT_IDX01$K

DR$FLU_STRAIN_SRCH_TXT_IDX01$NDR$FLU_STRAIN_SRCH_TXT_IDX01$PDR$FLU_STRAIN_SRCH_TXT_IDX01$RDR$FLU_STRAIN_SRCH_TXT_IDX01$SDR$FLU_STRAIN_SRCH_TXT_IDX01$UDR$FLU_STRAIN_SRCH_TXT_IDX02$IDR$FLU_STRAIN_SRCH_TXT_IDX02$KDR$FLU_STRAIN_SRCH_TXT_IDX02$NDR$FLU_STRAIN_SRCH_TXT_IDX02$PDR$FLU_STRAIN_SRCH_TXT_IDX02$RDR$FLU_STRAIN_SRCH_TXT_IDX02$SDR$FLU_STRAIN_SRCH_TXT_IDX02$UDR$FLU_STRAIN_TEST$IDR$FLU_STRAIN_TEST$KDR$FLU_STRAIN_TEST$NDR$FLU_STRAIN_TEST$PDR$FLU_STRAIN_TEST$RDR$FLU_STRAIN_TEST$UDR$NGS_SRCH_TXT_IDX1$IDR$NGS_SRCH_TXT_IDX1$KDR$NGS_SRCH_TXT_IDX1$NDR$NGS_SRCH_TXT_IDX1$PDR$NGS_SRCH_TXT_IDX1$RDR$NGS_SRCH_TXT_IDX1$SDR$NGS_SRCH_TXT_IDX1$UDR$NGS_SRCH_TXT_IDX2$IDR$NGS_SRCH_TXT_IDX2$KDR$NGS_SRCH_TXT_IDX2$NDR$NGS_SRCH_TXT_IDX2$PDR$NGS_SRCH_TXT_IDX2$R

DR$NGS_SRCH_TXT_IDX2$SDR$NGS_SRCH_TXT_IDX2$UDR$VIPR_PROT_SRCH_TXT_IDX01$IDR$VIPR_PROT_SRCH_TXT_IDX01$KDR$VIPR_PROT_SRCH_TXT_IDX01$NDR$VIPR_PROT_SRCH_TXT_IDX01$PDR$VIPR_PROT_SRCH_TXT_IDX01$RDR$VIPR_PROT_SRCH_TXT_IDX01$SDR$VIPR_PROT_SRCH_TXT_IDX01$UDR$VIPR_PROT_SRCH_TXT_IDX02$IDR$VIPR_PROT_SRCH_TXT_IDX02$KDR$VIPR_PROT_SRCH_TXT_IDX02$NDR$VIPR_PROT_SRCH_TXT_IDX02$PDR$VIPR_PROT_SRCH_TXT_IDX02$RDR$VIPR_PROT_SRCH_TXT_IDX02$SDR$VIPR_PROT_SRCH_TXT_IDX02$UFLU_PROT_QUK_SRCH_MV1FLU_PROT_QUK_SRCH_MV2FLU_SEGM_QUK_SRCH_MV1FLU_SEGM_QUK_SRCH_MV2FLU_STRAIN_QUK_SRCH_MV1FLU_STRAIN_QUK_SRCH_MV2FLU_STRAINQUK_SRCHNGS_QUK_SRCH_MV1NGS_QUK_SRCH_MV2VIPR_PROT_QUK_SRCH_MV_1VIPR_PROT_QUK_SRCH_MV_2WH_TEXT_IDX_MSTWH_TEXT_IDX_MST_BKWH_TEXT_IDX_MST_BK_20180522

Database: WMSYS ALL_MP_GRAPH_WORKSPACESALL_MP_PARENT_WORKSPACESALL_REMOVED_WORKSPACESALL_VERSION_HVIEWALL_WM_CONS_COLUMNSALL_WM_CONSTRAINTSALL_WM_IND_COLUMNSALL_WM_IND_EXPRESSIONSALL_WM_LOCKED_TABLESALL_WM_MODIFIED_TABLESALL_WM_POLICIESALL_WM_RIC_INFOALL_WM_TAB_TRIGGERSALL_WM_VERSIONED_TABLESALL_WM_VT_ERRORSALL_WORKSPACE_PRIVSALL_WORKSPACE_SAVEPOINTSALL_WORKSPACESALL_WORKSPACES_INTERNALAQ$_WM$EVENT_QUEUE_TABLE_FAQ$_WM$EVENT_QUEUE_TABLE_GAQ$_WM$EVENT_QUEUE_TABLE_HAQ$_WM$EVENT_QUEUE_TABLE_IAQ$_WM$EVENT_QUEUE_TABLE_LAQ$_WM$EVENT_QUEUE_TABLE_SAQ$_WM$EVENT_QUEUE_TABLE_T

USER_WORKSPACE_PRIVSUSER_WORKSPACE_SAVEPOINTSUSER_WORKSPACESWM$ALL_LOCKS_VIEWWM$ALL_VERSION_HVIEW_WDEPTHWM$ANC_VERSION_VIEWWM$BASE_HIERARCHY_VIEWWM$BASE_NEXTVER_VIEWWM$BASE_VERSION_VIEWWM$BATCH_COMPRESSIBLE_TABLESWM$BATCH_COMPRESSIBLE_TABLES$WM$COLUMN_PROPSWM$CONF_BASE_HIERARCHY_VIEWWM$CONF_BASE_NEXTVER_VIEWWM$CONF1_HIERARCHY_VIEWWM$CONF1_NEXTVER_VIEWWM$CONF2_HIERARCHY_VIEWWM$CONF2_NEXTVER_VIEWWM$CONS_COLUMNSWM$CONS_COLUMNS$WM$CONSTRAINTS_TABLEWM$CONSTRAINTS_TABLE$WM$CURCONFLICT_NEXTVERS_VIEWWM$CURCONFLICT_PARVERS_VIEWWM$CURRENT_CHILD_VERSIONS_VIEWWM$CURRENT_CONS_NEXTVERS_VIEW

WM$MP_GRAPH_WORKSPACES_TABLEWM$MP_GRAPH_WORKSPACES_TABLE$WM$MP_JOIN_POINTSWM$MP_PARENT_WORKSPACES_TABLEWM$MP_PARENT_WORKSPACES_TABLE$WM$MW_NEXTVERS_VIEWWM$MW_TABLEWM$MW_TABLE$WM$MW_VERSIONS_VIEW_9IWM$NESTED_COLUMNS_TABLEWM$NESTED_COLUMNS_TABLE$WM$NET_DIFF1_HIERARCHY_VIEWWM$NET_DIFF2_HIERARCHY_VIEWWM$NEXTVER_TABLEWM$NEXTVER_TABLE$WM$PARCONFLICT_NEXTVERS_VIEWWM$PARCONFLICT_PARVERS_VIEWWM$PARVERS_VIEWWM$REMOVED_WORKSPACES_TABLEWM$RESOLVE_WORKSPACES_TABLEWM$RESOLVE_WORKSPACES_TABLE$WM$RIC_LOCKING_TABLEWM$RIC_LOCKING_TABLE$WM$RIC_TABLEWM$RIC_TABLE$WM$RIC_TRIGGERS_TABLE

June 21, 2019 24 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

Database: WMSYS AQ$WM$EVENT_QUEUE_TABLEAQ$WM$EVENT_QUEUE_TABLE_RAQ$WM$EVENT_QUEUE_TABLE_SCDB_REMOVED_WORKSPACESCDB_WM_SYS_PRIVSCDB_WM_VERSIONED_TABLESCDB_WM_VT_ERRORSCDB_WORKSPACE_PRIVSCDB_WORKSPACE_SAVEPOINTSCDB_WORKSPACE_SESSIONSCDB_WORKSPACESDBA_REMOVED_WORKSPACESDBA_WM_SYS_PRIVSDBA_WM_VERSIONED_TABLESDBA_WM_VT_ERRORSDBA_WORKSPACE_PRIVSDBA_WORKSPACE_SAVEPOINTSDBA_WORKSPACE_SESSIONSDBA_WORKSPACESROLE_WM_PRIVSUSER_MP_GRAPH_WORKSPACESUSER_MP_PARENT_WORKSPACESUSER_REMOVED_WORKSPACESUSER_WM_CONS_COLUMNSUSER_WM_CONSTRAINTSUSER_WM_IND_COLUMNSUSER_WM_IND_EXPRESSIONSUSER_WM_LOCKED_TABLESUSER_WM_MODIFIED_TABLESUSER_WM_POLICIESUSER_WM_PRIVSUSER_WM_RIC_INFOUSER_WM_TAB_TRIGGERSUSER_WM_VERSIONED_TABLESUSER_WM_VT_ERRORS

WM$CURRENT_CONS_VERSIONS_VIEWWM$CURRENT_MP_JOIN_POINTSWM$CURRENT_NEXTVERS_VIEWWM$CURRENT_PARVERS_VIEWWM$CURRENT_WORKSPACE_VIEWWM$DBA_TAB_COLSWM$DIFF1_HIERARCHY_VIEWWM$DIFF1_NEXTVER_VIEWWM$DIFF2_HIERARCHY_VIEWWM$DIFF2_NEXTVER_VIEWWM$ENV_VARSWM$ENV_VARS$WM$EVENT_QUEUE_TABLEWM$EVENTS_INFOWM$EVENTS_INFO$WM$EXP_MAPWM$EXP_MAP_TBLWM$HASH_TABLEWM$HASH_TABLE$WM$HINT_TABLEWM$HINT_TABLE$WM$INSTEADOF_TRIGS_TABLEWM$INTERNAL_OBJECTSWM$LOCKROWS_INFOWM$LOCKROWS_INFO$WM$METADATA_MAPWM$METADATA_MAP_TBLWM$MIGRATION_ERROR_VIEWWM$MODIFIED_TABLESWM$MODIFIED_TABLES$WM$MP_GRAPH_CONS_VERSIONSWM$MP_GRAPH_NEW_VERSIONSWM$MP_GRAPH_OTHER_VERSIONSWM$MP_GRAPH_REMAINING_VERSIONSWM$MP_GRAPH_REMOVED_VERSIONS

WM$RIC_TRIGGERS_TABLE$WM$SYSPARAM_ALL_VALUESWM$SYSPARAM_ALL_VALUES$WM$TABLE_PARVERS_VIEWWM$TABLE_VERSIONS_IN_LIVE_VIEWWM$TABLE_WS_PARVERS_VIEWWM$UDTRIG_DISPATCH_PROCSWM$UDTRIG_DISPATCH_PROCS$WM$UDTRIG_INFOWM$UDTRIG_INFO$WM$VERSION_HIERARCHY_TABLEWM$VERSION_HIERARCHY_TABLE$WM$VERSION_TABLEWM$VERSION_TABLE$WM$VERSION_VIEWWM$VERSIONED_TABLESWM$VERSIONED_TABLES$WM$VERSIONED_TABLES$DWM$VERSIONED_TABLES$HWM$VT_ERRORS_TABLEWM$VT_ERRORS_TABLE$WM$WORKSPACE_PRIV_TABLEWM$WORKSPACE_PRIV_TABLE$WM$WORKSPACE_SAVEPOINTS_TABLEWM$WORKSPACE_SAVEPOINTS_TABLE$WM$WORKSPACE_SESSIONS_VIEWWM$WORKSPACES_TABLEWM$WORKSPACES_TABLE$WM$WORKSPACES_TABLE$DWM$WORKSPACES_TABLE$IWM_COMPRESS_BATCH_SIZESWM_COMPRESSIBLE_TABLESWM_EVENTS_INFOWM_INSTALLATIONWM_REPLICATION_INFO

Database: XDB APP_ROLE_MEMBERSHIPAPP_USERS_AND_ROLESDOCUMENT_LINKSJSON$COLLECTION_METADATAJSON$COLLECTION_METADATA_VJSON$USER_COLLECTION_METADATAPATH_VIEWRESOURCE_VIEWX$NM7UJB7VPFVE92KV0GUML7K0LVSFX$PT7UJB7VPFVE92KV0GUML7K0LVSFX$QN7UJB7VPFVE92KV0GUML7K0LVSFXDB$ACLXDB$ALL_MODELXDB$ANYXDB$ANYATTRXDB$ATTRGROUP_DEFXDB$ATTRGROUP_REFXDB$ATTRIBUTEXDB$CDBPORTSXDB$CHECKOUTS

XDB$CHOICE_MODELXDB$COLUMN_INFOXDB$COMPLEX_TYPEXDB$CONFIGXDB$D_LINKXDB$DBFS_VIRTUAL_FOLDERXDB$DXPTABXDB$ELEMENTXDB$GROUP_DEFXDB$GROUP_REFXDB$H_INDEXXDB$H_LINKXDB$IMPORT_NM_INFOXDB$IMPORT_PT_INFOXDB$IMPORT_QN_INFOXDB$IMPORT_TT_INFOXDB$MOUNTSXDB$NLOCKSXDB$NONCEKEYXDB$PATH_INDEX_PARAMS

XDB$RCLIST_VXDB$REPOSXDB$RESCONFIGXDB$RESOURCEXDB$ROOT_INFOXDB$ROOT_INFO_VXDB$SCHEMAXDB$SEQUENCE_MODELXDB$SIMPLE_TYPEXDB$STATSXDB$TSETMAPXDB$TTSETXDB$XDB_READYXDB$XIDX_IMP_TXDB$XIDX_PARAM_TXDB$XIDX_PART_TABXDB$XTABXDB$XTABCOLSXDB$XTABNMSPXDB_INDEX_DDL_CACHE

3.3 DATA TYPES

June 21, 2019 25 FINAL Version 2.0

NIAID BRC – ViPR and IRD

Final Transition Plan

The BRC ViPR and IRD systems share an underlying configuration including a number of data types originating from common data sources. The following table highlights the data types available in the systems. Additional details can be found on the web sites at:

o ViPR: https://www.viprbrc.org/brc/dataSummary.spg?decorator=vipro IRD: https://www.fludb.org/brc/dataSummary.spg?decorator=influenza

Originated From Data Type Data Source ViPR IRDImported Public Data for ViPR and/or IRD

Genome Sequences/Annotations NCBI – Genbank. NCBI - RefSeq X XOrganism / Species Taxonomy GenBank: ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gzCurated Epitopes Immune Epitope Database (IEDB) - http://www.iedb.org/ X XProtein Annotations UniProt - www.uniprot.org X XProtein 3D Structures RCSB Protein Data Bank (PDB) - http://www.rcsb.org/ X XActive Sites Catalytic Site Atlas X XOrthologs | OrthoMCL https://orthomcl.org/orthomcl X XCustom ViPR Pipeline https://sites.google.com/site/cmzmasek/home/software/forester/daio XBird Taxonomy AVIBase X

Data Submitted Directly to ViPR and/or IRD

Clinical Metadata NIAID Genome Sequencing Center X XClinical and Experiment Data CEIRS, UMB, Broad, USAF School of Aerospace Medicine, etc. X XHost Factor Data NIAID Systems Biology Program X XHost Factor Data ViPR-funded Driving Biological Projects XHost Factor Node and Edge Data IRD / ViPR X XSurveillance Records, Serology Test Records

NIAID Centers of Excellence for Influenza Research and Surveillance (CEIRS) X

Generated Data - ViPR and/or IRD

Sequence Similarities (Pre-computed Blast) NCBI BlastP - http://www.ViPRbrc.org/brcDocs/documents/VIPR_BLASTP.pdf X X

Predicted CTL Epitopes NetCTL X XDomains/Motifs (InterProScan) InterProScan X XPFAM Sanger: ftp://ftp.sanger.ac.uk/pub/databases/Pfam/releases/ X X

Generated Data - ViPR

Mature Peptides ViPR Pipeline XIsoelectric Point and Molecular Weight ViPR Custom Algorithm XSequence Feature Variant Types ViPR Curation X

Generated Data - IRD

Isoelectric Point and Molecular Weight IRD Custom Algorithm XSequence Feature Variant Types IRD Curation XSNP/Consensus Sequence polymorphism data IRD Pipeline X

PCR Primers & Probes IRD Curation XPA-X Protein Annotation IRD Algorithm - http://www.fludb.org/brcDocs/documents/PAX_SOP.pdf X

H5N1 Clade Classification https://www.fludb.org/brcDocs/documents/IRD_H5N1_CLADE_SOP.pdfhttp://www.fludb.org/brcDocs/documents/PAX_SOP.pdf X

Flu Season Assignment IRD Curation X2009 pH1N1 Sequence ClassificationH1N1 pandemic classification IRD Tool X

Additional Data Types

Drug Bank Drug Bank: http://www.drugbank.ca/downloads X XNRDB GenBank X XShort Sequence Search DB IRD / VIPR computation X XBlastDB Search IRD / VIPR computation X XRNA Structure Data, pOME Plasmid Sequences

ORFeome project X X

Taxonomy data IRD / ViPR X XReagent data CEIRS XGenotype determination and recombination detection

VIPR

Gbrowse data ViPR

3.4 DATA SOURCES

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Data is submitted and gathered and then curated into the BRC from a variety of sources and stakeholders (e.g. Broad Institute, CEIRS Centers, GenBank, Systems Biology projects, etc.). A full list of data sources and information about their operation is available at:

o ViPR: https://www.viprbrc.org/brc/dataSources.spg?decorator=vipr o IRD: https://www.fludb.org/brc/dataSources.spg?decorator=influenza

3.5 DATA MANAGEMENT TOOLS / SCRIPTSDatabase Tools PurposeOracle Text Indexing Provides a global keywords-based database search and also supports Boolean searchesRMAN Database backup SQL*Loader Data XMLDB To parse and store XML dataOracle Partitioning Partitioning maintains the logical division between ViPR and IRD data, and provides greater performance

in data retrieval and better data management. The database uses list and reference partitioning to gain performance advantages.

Oracle Virtual Columns Used generously to split the single column’s data in different ways (without adding any hardware and data management overheads) to provide better data sorting and search facility.

EXPDMP and IMDP These tools are used for taking logical backups and restoring the logical backups.Materialized view with Query Rewrite option

Merge of data sets which are distributed across various schemas/tables to improve performance.

Oracle EM 12c Cloud Manager Database Administration and MonitoringOracle Data Guard 12c Standby Database Management Views and PL/SQL Packages, Procedures and Functions

ETL scripts

3.6 DATA LOAD AND INTEGRATION

The ViPR/IRD database is populated with data downloaded from public data sources and stakeholders and then curated by the NGC team. Data flows from these external data sources through the staging database to the production data warehouse, where it becomes available for use by the ViPR and IRD applications.

The Staging Database houses initially downloaded and submitted data. NGC staff, utilizing their expertise with manual and automated operations, curate, cleanse, and validate data to ensure integrity and quality before it is transferred to the production data warehouse. The staging database uses a microorganism-independent infrastructure originally adapted from the Genome Unified Schema (GUS) developed at the Computational Biology and Informatics Laboratory at the University of Pennsylvania. The GUS infrastructure supports storage of genomic sequence data and its annotation along with descriptive information (e.g., literature references, author names, notes and comments) downloaded from GenBank. It maximizes data usability through use of a set of schemas that integrate genome, protein, transcriptome, gene regulation and networks, ontologies and controlled vocabularies, and gene expression. The NGC development team made enhancements to store new data types not supported by GUS (e.g. pre-computed and runtime-generated enrichment/value added information).

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The Production Data Warehouse is a read-only database for highly curated data of production quality. It is populated using Extract-Transform-Load (ETL) scripts that extract data from various internal databases, including the staging database, and apply aggregation, integration and data validation rules before updating the production data warehouse. This data is available to users via the web interfaces.

The Workbench Database supports ViPR and IRD users in searching, selecting, and manipulating data for user-specific analysis and research purposes. The system stores these datasets and any results generated using ViPR/IRD tools and user-submitted data sets and protects the user’s workbench using the Oracle12c Data Guard tool that synchronizes between production and the workbench.

4. SOFTWARE ASSETS

4.1 SOFTWARE DEVELOPMENT TOOLS

The NGC system development team utilizes Struts, Hibernate, and the Spring framework, and other open source libraries and software to build the software that provides the functionalities to the user.

Tool / Library Purpose (License) URLMyEclipse IDE (Purchased licenses) http://www.myeclipseide.com Subversion Version control (Apache/BSD-style open source license) http://subversion.tigris.org Ant Build tool (Apache Software License V2.0) http://ant.apache.orgHudson Build management tool (Creative Commons / MIT license) https://hudson.dev.java.netDbVisualizer Database Client (Purchased licenses) http://www.dbvis.com Tomcat Application Server (Apache Software License V2.0) http://tomcat.apache.orgERwin Database Schema Design/Modeler (Purchased licenses) http://www.erwin.com IBM Rational Functional Tester (RFT) Testing (Purchased licenses) http://www.ibm.com/software/products/

us/en/functional NeoLoad Load Testing (Purchased licenses) http://www.cs.wisc.edu/condor JIRA Change Management (Purchased licenses) https://www.atlassian.com/software/jira Hibernate Object relational mapping library (Open source) http://www.hibernate.org Bitbucket Version control toolJenkins Build management toolToad for OracleToad Data Modeler

Database management and monitoring (with Team coding linked to Git repository) and a data modeling tool https://www.quest.com/toad

Oracle Enterprise Manager Cloud Control 12c

For database administration, database and storage management, and monitoring https://www.oracle.com

Oracle SQL Developer Database querying tool (free from product) https://www.oracle.comOracle SQL Modeler Database data modeling tool (free product) https://www.oracle.comSpring MVC Spring MVC framework http://www.springsource.org Struts 1 Java MVC framework http://struts.apache.org/1.x Hibernate Java ORM Framework http://www.hibernate.org

Spring An open source application framework and Inversion of Control container for the Java platform. http://www.springsource.org/

xFire Java SOAP framework for building SOAP web services http://xfire.codehaus.org/jUnit Java Unit test framework http://www.junit.org/

BioJava An open-source project dedicated to providing a Java framework for processing biological data http://biojava.org/wiki/Main_Page

Apache POI The Java API for Microsoft Documents http://poi.apache.org/Apache Ant A software tool for automating software build processes http://ant.apache.org/

JFreeChartAn open-source framework for the programming language Java, which allows the creation of a wide variety of both interactive and non-interactive charts.

http://www.jfree.org/jfreechart/

iText Open source library for create and manipulate PDF files in Java. http://itextpdf.com/Prototype A javascript framework/library http://prototypejs.org/jQuery Multi-browser JavaScript library to simplify client-side HTML scripting http://jquery.com/

4.2 OPEN SOURCE DATA GENERATION TOOLS

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Tool Name Purpose URLJsMol.js 3d structure visualization (GNU Lesser General Public License) http://jmol.sourceforge.net BlastP, BlastN, Blast Sequence matching algorithm (Public Domain) ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release MUSCLE Sequence alignment algorithm (Public Domain) http://www.drive5.com/muscle ClustalW Sequence alignment algorithm (Site specific license) ftp://ftp.ebi.ac.uk/pub/software/clustalw2 GBrowse Genome annotation viewer (Perl Artistic License) http://gmod.org/wiki/index.php/Gbrowse Ortholuge Ortholog predictions (GNU General Public License) http://www.pathogenomics.ca/ortholuge OrthoMCL Ortholog generation (Public Domain) http://www.orthomcl.org/cgi-bin/OrthoMclWeb.cgi InterProScan Domains/Motifs (GNU General Public License) ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/index.html NetCTL Protein epitope prediction (Academic) http://www.cbs.dtu.dk/services/NetCTLVIGOR3 Rota Virus genotype and segment annotation tools http://www.jcvi.org/vigor

CladinatorVirus Genotype prediction. Cladinator assigns a genotype/subtype for the query sequence based on its placement in the phylogeny

https://sites.google.com/site/cmzmasek/home/software/forester/cladinator

PplacerPplacer places query sequences in a fixed reference phylogeny according to phylogenetic posterior probability and maximum likelihood criteria

https://omictools.com/pplacer-tool https://www.ncbi.nlm.nih.gov/pubmed/21034504https://github.com/matsen/pplacer

Guppy Visualizes sequence annotation data of the genetic sequence data with graphical layout

https://omictools.com/guppy-tool https://github.com/ctb/guppy

BioPerl Open source Perl tools for bioinformatics, genomics and life science, and creating pipelines for data analysis https://bioperl.org

Taxit Extracting subsets of the NCBI taxonomy, and creating and updating reference packages of sequences for use with Pplacer https://github.com/fhcrc/taxtastic

4.3 DATA ANALYSIS AND VISUALIZATION TOOLS

The BRC sites utilize many tools developed under the contract by the NGC development team and/or integrated to support various types of sequencing and structure analysis. These are listed below.

Analysis Tools: https://www.fludb.org/brc/analysis_landing.spg□ Identify Similar Sequences (BLAST) □ Identify Short Peptides in Influenza Proteins □ Infer Phylogenetic Relationships and

Generate Trees □ Identify Point Mutations □ Pandemic H1N1 Classification □ HPAI H5N1 Clade Classification

□ Swine H1 Clade Classification□ Sequence Format Conversion□ HA Subtype Numbering Conversion

(beta)□ Align Sequences□ Visualize Aligned Sequences□ Annotate Sequences

□ Analyze Sequence Variation (SNP) □ Metadata-driven Comparative Analysis

Tool for Sequences (meta-CATS) □ PCR Primer Design □ Antiviral Resistance Risk Assessment □ Identify Sequence Features in Segments

4.4 EXTERNAL TOOLS

In addition to the many tools customized by the NGC development team for BRC use, there are external tools available to support sequencing and structure analysis. These are available via our web sites:

External Tools: https://www.fludb.org/brc/externalTools.spg?decorator=influenzahttps://www.viprbrc.org/brc/externalTools.spg?decorator=vipr

□ Nucleotide Sequence Analysis□ Protein Sequence Analysis□ Protein Structure Analysis

□ RNA Analysis□ Next-Generation Sequence Analysis

□ Modeling□ Post-Translational Modification

4.5 APPLICATION PROGRAMMING INTERFACES (APIS)All of these APIs are available on the public web sites at: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=ViprInfo&subtype=API

API name Purpose Tool website LicenseSpring J2EE support http://www.springframework.org Apache Software License Version 2.0Hibernate ORM and persistence http://www.hibernate.org GNU Lesser General Public License

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Spring MVC Web framework http://www.springframework.org Apache Software License Version 2.0xFire SOAP Web Service Library http://xfire.codehaus.org FreeiText PDF rendering http://www.lowagie.com/iText GNU Lesser General Public License JSON Data exchange http://www.json.org/java Free useBioJava Java Bioinformatic Library http://biojava.org LGPL 2.1Apache POI Excel rendering http://poi.apache.org Apache Software License Version 2.0Jersey Rest Web Service Library http://jersey.java.net GPL – Version 2BioPerl Tools for bioinformatics, genomics and life science https://bioperl.org Artistic license and GPLCytoscape.js Graph theory library for visualization and analysis http://js.cytoscape.org MITMSAViewer, Multiple Sequence Alignment visualization http://msa.biojs.net BSL-1.0

5. KNOWLEDGE ASSETS

5.1 PUBLICATIONS, PRESENTATIONS, AND CONTRIBUTIONS TO THE COMMUNITYArtifacts URL – ViPR URL – IRDContributions to the Community

https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprPublications&subtype=All

https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=HomeSpecialNotice&subtype=IRDResearch

Meetings & Eventshttps://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=NewsEventsVipr&subtype=viprMeetingsEvents

https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=NewsEventsInfluenza&subtype=influenzaMeetingsEvents

Newsletters and Articles

https://www.viprbrc.org/brc/newslettersVipr.spg?method=release&decorator=vipr

https://www.fludb.org/brc/newslettersIRD.spg?method=release&decorator=influenza

Publications & Scientific Reports

https://www.viprbrc.org/brc/analysisReportList.spg?method=SubmitForm&decorator=vipr

https://www.fludb.org/brc/analysisReportList.spg?method=SubmitForm&decorator=influenza

Citing the system https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprInfo&subtype=Cite

https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=Cite

5.2 TRAINING MATERIALSArtifacts URL – ViPR URL – IRDHelp Manuals (On-Line) & User Guides https://www.viprbrc.org/brcDocs/ViPRHelp/ViPRhelpfile.htm https://www.fludb.org/brcDocs/IRDHelp/IRDhelpfile.htm

Tutorials and Training Materials https://www.viprbrc.org/brc/viprTutorials.spg?decorator=vipr https://www.fludb.org/brc/influenzaTutorials.spg?decorator=influenza

Instructional Materials

https://www.viprbrc.org/brc/resource_landing.spg?decorator=vipr

https://www.fludb.org/brc/resource_landing.spg?decorator=influenza Sequence Feature Variant Types (user doc., Tutorial, how to use SFT, and SOP file): https://www.fludb.org/brc/influenza_sequenceFeatureVariantTypes_search.spg?method=ShowCleanSearch&decorator=influenza

Webinars https://www.viprbrc.org/brc/viprTutorials.spg?decorator=vipr https://www.fludb.org/brc/influenzaTutorials.spg?decorator=influenzaWorkshops https://www.viprbrc.org/brc/viprTutorials.spg?decorator=vipr https://www.fludb.org/brc/influenzaTutorials.spg?decorator=influenzaPresentations https://www.viprbrc.org/brc/viprTutorials.spg?decorator=vipr https://www.fludb.org/brc/influenzaTutorials.spg?decorator=influenza

5.3 SYSTEM DOCUMENTATIONSystem Information DescriptionBRC Compendium (e.g. Sys Architecture)

For system architecture information describing subsystems from a high-level systemic point of view.

Standard Operating Procedures

The IRD Maintenance and Operations Plan.doc, located under Subversion at Docs\Operation_and_Maintenance\IRD_Maintenance_and_Operations_Plan.doc) contains information about procedures related to the operation and maintenance of the various components making the various subsystems. The document contains many procedures including start up and shut down the physical servers (including application servers) and other hardware components.

Protocols IRD –16 protocols documented at: https://www.fludb.org/brc/staticContent.spg?decorator=influenza&type=FluInfo&subtype=Protocols ViPR – 13 protocols documented at: https://www.viprbrc.org/brc/staticContent.spg?decorator=vipr&type=ViprInfo&subtype=Protocols

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System Information DescriptionCustomizations: Maintenance and Operations Plan

The document located under Subversion at Docs\Operation_and_Maintenance\IRD_Maintenance_and_Operations_Plan.doc) contains information about the various customizations performed on the hardware, databases and software. Among other things, the document contains information on:How the operating systems on the various physical servers have been optimized to achieve the optimal performance required for the systems and subsystems.How the web server software has been customized. How the firewalls have been configured to achieve security.

GitHub (source code) IRD / ViPR: https://github.com/VirusBRC

6. GOVERNMENT FURNISHED EQUIPMENT (GFE)All GFE in use and/or on site (as of the publication date of this document) is located in Northrop Grumman office space on the 5th floor at 2101 Gaither Road, Rockville, MD.

Control # Serial Number Description Location Rack Dell Rack - FOUR Server Room: Rack 4 Rack Dell Rack - SIX Server Room: Rack 6 Rack Dell Rack - SEVEN Server Room: Rack 72BFCRL1 Dell Latitude XT2 Server Room78123423 Dell Desktop IN USE - Rm 502G78123428 Dell Monitor IN USE - Rm 502F78123429 Dell Monitor IN USE - Rm 51278123430 Dell Monitor IN USE - Rm 50878123431 833FXQ1 Dell R710 Server Server Room: Rack 678123432 VMESXI4 Dell R710 Server Server Room: Rack 378123433 Power Supply APC 3000 Server Room: Rack 678123434 833JXQ1 Dell R710 Server Server Room: Rack 378123435 833GXQ1 Dell R710 Server Server Room: Rack 678123436 833LXQR Dell R710 Server Server Room: Rack 6C0008539 6D2GFP1 Dell R610 Server Server Room: Rack 3C0008540 8V9RPN1 Dell R710 Server Server Room: Rack 3C0008542 Dell 2950 IN USE - Rm 508C0008543 Dell OPTIPLEX 760 IN USE - Rm JasonsC0008544 Dell OPTIPLEX 760 IN USE - Rm 508C0008547 PowerVault TL 4000 Server RoomC0008563 62GLWN1 Dell Optiplex 780 Server RoomC0008564 Dell Monitor IN USE - Rm 512C0008570 CN-OFH8MW-74445-08Q-DQ7L Console Monitor 2009Wt FP LCD Server Room: Rack 6C0008571 Dell Desktop IN USE - Rm 516CC0008572 DELL GX620 3.2, 2G Server RoomC0008573 JMX1415L249 Cisco ASA5520 Server Room: Rm 527C0008574 Power Supply APC3000 Server Room: Rack 7C0008575 Power Supply APC 3000 Server Room: Rack 6C0008576 Power Supply APC 3000 Server Room: Rack 6C0008577 Power Supply APC 3000 Server Room: Rack 6C0008578 NO SERVICE TAG PowerEdge 1U 17 LCD IN USE - Rm 502DC0008579 7L8G9F1 PwrEdge 2950 Server - BRC-PROD-DP-1 Server Room: Rack 6C0008580 66881D1 PwrEdge 2950 Server - BRC-VMESXI-01 2950 Server Room: Rack 4C0008581 JMX1415L24A Cisco ASA5520 Server Room: Rack 4C0008582 FTX0936A1L4 Cisco 2621 XM (Deprecated_BACKUP_ONLY) Server Room: Rm 527C0008588 0017C5CODAOC Sonicwall 4500 Server Room: Rack 6C0008590 FTX1014A22F Cisco 2821 Server Room: Rack 6C0008592 FQ6KH1 PowerConnect 6224 Server Room: Rack 7C0008593 7222ZD1 Dell Brocade 5100 Server Room: Rack 7C0008594 J222ZD1 Dell Brocade 5100 Server Room: Rack 7C0008595 HTLBFD1, 5SMBFD1 (5 Pieces) Dell EMC CX4-120 Fibre Array Server Room: Rack 7

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Control # Serial Number Description LocationC0008611 Power Supply APC2 Server Room: Rack 3C0008612 Power Supply APC3 Server Room: Rack 3C0008613 BGD85L1 Dell R710 Server Server Room: Rack 6C0008614 J7MC5L1 PowerEdge R410 Server Room: Rack 6C0008615 9CL85L1 PowerEdge R710 Server Room: Rack 6C0008616 JF265L1 PowerEdge R610 - "Build" Server Room: Rack 3: 16 - FC0008617 1G265L1 PowerEdge R610 Server Room: Rack 6C0008618 3G265L1 PowerEdge R610 Server Room: Rack 3: 13 - FC0008619 2G265L1 PowerEdge R610 Server Room: Rack 6C0008620 8C195L1 PowerEdge R710 Server Room: Rack 7C0008621 9C195L1 PowerEdge R710 Server Room: Rack 7C0008622 C66F5L1 PowerEdge R710 Server Room: Rack 7C0008623 B66F5L1 PowerEdge R710 Server Room: Rack 7C0008624 866F5L1 PowerEdge R710 Server Room: Rack 7C0008625 966F5L1 PowerEdge R710 Server Room: Rack 7C0008626 C3ZV3J1 PowerVault TL 4000 Server Room: Rack 6C0008627 JT6KFH1 PowerConnect 6224 Server Room: Rack 7C0008628 9P6KFH1 PowerConnect 6224 Server Room: Rack 6C0008629 J4GLXH1 PowerEdge 2161DS/2 Server Room: Rack 7C0008631 2009Wt FP LCD IN USE - Rm 505C0008632 F754JK1 Dell OPTIPLEX 780 w/Dell Pro 2009w IN USE - Rm 507C0008633 F773JK1 Dell OPTIPLEX 780 w/Dell Pro 2009w Server RoomC0008634 F755JK1 Dell OPTIPLEX 780 w/Dell Pro 2009w IN USE - Rm 505C0008635 F763JK1 Dell OPTIPLEX 780 w/Dell Pro 2009w IN USE - Rm 506C0008636 F756JK1 Dell OPTIPLEX 760 IN USE - Rm 508C0008637 F764JK1 Dell OPTIPLEX 760 IN USE - Rm 502IC0008638 CN -0FH8MW-74445-99M-CYWL Dell Monitor 2009Wt FP LCD IN USE - Rm 502IC0008639 CN -0FH8MW-74445-99M-CYQL Dell Monitor 2009Wt FP LCD IN USE - Rm 505C0008640 CN -0FH8MW-74445-99M-CUOL Dell Monitor 2009Wt FP LCD IN USE - Rm 502GC0008641 CN -0FH8MW-74445-99M-CUML Dell Monitor 2009Wt FP LCD IN USE - Rm 506C0008642 CN -0FH8MW-74445-99M-CYNL Dell Monitor 2009Wt FP LCD Server RoomC0008643 CN -0FH8MW-74445-99M-CZNL Dell Monitor 2009Wt FP LCD IN USE - Rm 506C0008644 CN -0FH8MW-74445-99M-CZSL Dell Monitor 2009Wt FP LCD IN USE - Rm 508C0008645 CN -0FH8MW-74445-99M-CTVL Dell Monitor 2009Wt FP LCD IN USE - Rm 505C0008646 F753JK1 OPTIPLEX 760 Server RoomC0008647 CN -0FH8MW-74445-99M-D11L Dell Monitor 2009Wt FP LCD IN USE - Rm 507C0008648 Dell Desktop IN USE - Rm 502FC0008657 HP2S7G1 Dell OPTIPLEX 755 Server RoomC0008659 4WR01G1 Dell OPTIPLEX 755 Server RoomC0008663 Dell Desktop IN USE - Rm 508C0008670 F55SQC1 PowerEdge 2950 Server (DEVDP2 1750) Server Room: Rack 4C0008671 9Q5H1D1 PowerEdge 2950 Server Server Room: Rack 6C0008672 6Q5H1D1 PowerEdge 2950 Server Server Room: Rack 6C0008673 3Z2F7C1 PowerEdge 2950 Server Server Room: Rack 4C0008675 7MJ2581 Traindb 2850 Server RoomC0008684 H975P91 PowerEdge 2850 Server Server Room: Rack 3C0008685 BDZNJ81 PowerEdge 2850 Server Server Room: Rack 3C0008686 5J2NJ81 PowerEdge 2850 Server Server Room: Rack 3C0008687 GF2NJ81 PowerEdge 2850 Server Server Room: Rack 4C0008696 JS0529025907 APC 3000 (NOT POWER EDGE 2850) Server Room: Rack 3: 05/06 - FC0008697 DDZNJ81 PowerEdge 2850 Server Server Room: Rack 3C0008698 CDZNJ81 Dell PwrEdge 2850 Server Room: Rack 3C0008699 4R9BS71 McData Switch one (rprodse_sw1) Server Room: Rack 4C0008700 4FBBS71 McData Switch one (rprodse_sw2) Server Room: Rack 4C0008701 HGF32B1 Devapp2 2850 Server RoomC0008702 1H51L71 DELL SWITCH 5324 Server Room: Rack 4C0008703 6S81M81 PowerEdge 1850 - RPRODSE03 (Prod App) Server Room: Rack 3

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Control # Serial Number Description LocationC0008704 9S81M81 PowerEdge (RPRODSE04) Server RoomC0008705 6J2NJ81 PowerEdge 2850 Server Room: Rack 4C0008706 HYCNN81 PowerEdge 1850 Server Room: Rack 3C0008707 1ZCNN81 PowerEdge 1850 -PUBWEB was BRCTESTWEB Server RoomC0008708 FYCNN81 PowerEdge 1850 (RPRODSE06 Prod Web) Server Room: Rack 3C0008709 F151L71 POWERCONNECT 5324 MANAGE Server Room: Rack 3C0008711 CN -0Y4299-71618-5Ar-AD89 Dell Monitor 1704FPTt FP LCD IN USE - Rm 502HC0008712 3NF1692R SEAGATE 400 GB EXTERNAL Server RoomC0008713 PowerConnect 5325 Server Room: Rack 7C0008716 CN0Y4299-71618-58C-CD9P Dell OPTIPLEX 620 W/MONI IN USE - Rm 504C0008717 CV39H91 Dell OPTIPLEX 620 W/MONI IN USE - Rm 512C0008718 87WW981 Dell GX620 3.2, 2G Server RoomC0008719 CN0Y42997161859CABV1 1704 FPT Server RoomC0008720 C1B7X81 DELL GX 620, 3.2, 2 G Server RoomC0008722 FV 6HV71 Monitor-1704 FPT IN USE - Rm 514C0008724 DML8K81 GX 620 3.2 2G Server RoomC0008725 WD32008011 WESTERN DIGITAL EXT HARD Server RoomC0008726 DGFFS21 DELL PRINTER (M5200) IN USE - Rm 527C0008727 9VVX391 DELL DESKTOP GX620 WITH Server RoomC0008729 YM6381L3TAA APPLE MAC MINI Server RoomC0008730 CN0Y429971618563CH BRC-DELL GX 280 DESKTOP Server RoomC0008731 C7GR481 DELL GX620, 3.2 2G RAM Server RoomC0008732 0006B1028AA0 SonicWall 4060 Server RoomC0008733 None-Battery APC SmartUPS 3000 Server Room: Rack 2: 01/02 - FC0008735 None-Battery APC SmartUPS 3000 Server Room: Rack 2: 05/06 - FC0008737 PowerEdge Rack Console 15FP Server Room: Rack 2: 18 - FC0008738 922MV71 EXPDB 1850 Server RoomC0008739 HYN1081 PowerEdge 2850 - emoatedev64.immport.net Server Room: Rack 1: 15/16 - FC0008741 J8YYQ61 BRC MULTIPLE SERVER ORDE Server RoomC0008742 NETBOTZ 420 Server Room: Rack 2: 37 - FC0008743 MC5V2001894 EMC DS-24 Fibre Switch (rdevse_sw2) Server Room: Rack 1: 10 - FC0008744 MC5V2001893 EMC DS-24 Fibre Switch (rdevse_sw1) Server Room: Rack 1: 11 - FC0008745 AC115040702438 EMC Clarion CX300 dev Server Room: Rack 1: 07/09 - FC0008746 2ZN1081 Poweredge 2850 (Devapp1) Server Room: Rack 1: 19/20 - FC0008747 JYN1081 Poweredge 2850 (testapp1) Server Room: Rack 2: 22/23 - FC0008748 0006B1028AA0 SonicWall Pro 4060 Server Room: Rack 2: 37 - BC0008749 922MV71 Poweredge 1850 - Dev Pipeline Server Room: Rack 1: 36 - FC0008750 CSNZK71 POWERCONNECT 5324 Server RoomC0008751 ?????? Dell Monitor Server RoomC0008752 1ZK5M71 Dell GX 280 Desktop IN USE - Rm 502HC0008753 JYK5M71 Dell GX 280 Desktop Server RoomC0008754 IKMRR71 BRC MULTIPLE SERVER ORDE Server RoomC0008755 1KMRR71 Dell Rack - TWO Server Room: Rack 2C0008757 CNOY42997161854LALV2 Monitor 1704 Server RoomC0008758 CN0Y42997161854LAGMT Dell GX 280 Desktop Server RoomC0008759 FYK5M71 Dell GX 280 Desktop Server RoomC0008760 8ZK5M71 Dell GX 280 Desktop IN USE - Rm 522C0008761 3ZK5M71 Dell GX 280 Desktop IN USE - Rm 504C0008762 CN0Y42997161854LAGUZ Dell Monitor Server RoomC0008763 CN0Y42997161854LAGUR Dell Monitor Server RoomC0008764 MYOH630447630545AJHS Dell Monitor IN USE - Rm 504C0008765 JTPPL71 Dell GX 280 Desktop Server RoomC0008766 CM0U49314663353F2YCM LATITUDE D610 LAPTOP Server RoomC0008767 CN0R16314864352F1547 DOCK PD01X Server RoomC0008768 UV3457X9PHO Ibook Server RoomC0008769 2SK8R21 Latitude C640 Server RoomC0008770 CVZJB71 DELL GX 280 3.2, 2G Server Room

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NIAID BRC – ViPR and IRD

Final Transition Plan

Control # Serial Number Description LocationC0008771 MX04N736470534LBPB0 Monitor -M992m Server RoomC0008784 11XFH71 Dell Latitude D610 Server RoomC0008793 CN02Y315716184A8AH95 Dell Monitor IN USE - Rm 508C0008794 8SWH661 Dell Desktop IN USE - Rm 507C0008795 CN02Y315716184A8AHWU Dell Monitor IN USE - Rm 507C0008796 GSWH661 Dell Desktop Server RoomC0008797 CN02Y315716184A8AH8W Dell Monitor Server RoomC0008798 7SWH661 Dell Desktop Server RoomC0008799 CN02Y315716184A8AH92 Dell Monitor IN USE - Rm 513C0008800 GRWH661 Dell Desktop IN USE - Rm 504C0008801 CN02Y315716184A8AHX0 Dell Monitor IN USE - Rm 507C0008802 2SWH661 Dell Desktop Server RoomC0008803 N/A 15 Hard Drives Server RoomC0008804 MX04N73647605381B8EC Dell Monitor M992-Scott-check is it BRC Server RoomC0008805 CSCH561 Dell Rack - ONE Server Room: Rack 1C0008808 FYCNN81 POWEREDGE 1850 (3) NO 2N Server RoomC0008817 3CHJL31 KVM Switch 2161DS Server Room: Rack 4C0008818 Dell Rack - THREE Server Room: Rack 3C0008819 HQ51451 Dell Switch 3348 Server Room: Rack 4C0008820 0006B102SE18 SonicWall 4060 Server RoomC0008821 17MZ661 PowerEdge 1750 Server Room: Rack 4C0008822 37CR761 PowerEdge 1750 - BRC MULTIPLE SERVER ORDE Server Room: Rack 4C0008823 7VF3961 PowerEdge 2650 Server RoomC0008824 2VF3961 PowerEdge - BRC MULTIPLE SERVER ORDE Server RoomC0008825 Power Supply APC3000 Server Room: Rack 4C0008826 Power Supply APC3000 Server Room: Rack 4C0008827 FKMX861 EMC CX300 Server Room: Rack 4C0008828 HT7R761 PowerEdge 1850 (3) NO 2N (1750) Server Room: Rack 4C0008829 GG63N41 Dell 132T Server RoomC0008830 CH-0G632512963-49E1555 Dell PowerEdge Rack Console 15FP Server Room: Rack 4No Tag 5SMBFD1 Dell EMC CX4G15-300 Server RoomNo Tag 8JNCFD1 Server Room: Rack 7No Tag F7JCFD1 Server Room: Rack 7No Tag HTLBFD1 Dell EMC CX4G15-300 Server Room

June 21, 2019 34 FINAL Version 2.0