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Frank Bergmann

Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

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Page 1: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

Frank Bergmann

Page 2: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

Systems Biology Workbench

Systems Biology Workbench

Analysis Tools

Simulators

Modeling Environments

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Page 3: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

SBW Menu

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Funding

Page 5: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

http://sys-bio.org

Web Applications

• Simulation

• Validation

• Layout Generation

Video Tutorials

• Jarnac

• JDesigner

Updated Documentation

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Page 6: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

New Modules

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Page 7: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

New Modules

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Page 8: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

New Modules

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Page 9: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

Design

ConstructImplement

Plan

Visual Editor

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Page 10: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

Visual Editor

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Updated Modules

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SBML Support

•Using libSBML 3.0

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Updated Modules

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Page 13: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

Updated Modules

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Page 14: Updates – Systems Biology Workbenchsbml.org/images/3/34/20071005-bergmann-sbwupdate.pdfDizzy Simulation Service edu.kgi.roadRunner Simulation Service Frequency Analysis Module Gibson

Thank You!

http://sys-bio.org

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