Uniting Patent Data Sources with BigQuery · 2019. 11. 4. · Row standard_inchi_key compound_name site_name target_type pref_name 61 HUMNYLRZRPPJDN-UHFFFAOYSA-N Benzaldehyde Tyrosinase,

Uniting Patent Data Sources with BigQuery

May 2018

A lot of data – from a lot of sources

© 2017

R&DData – Lab

Results

Trials & Test

Results

Sales & Market

Data

Private Corporate Data Private Vendor Data

Public Data Providers Collaborators & Partners

Patent Data on BigQuery

© 2018

Not really “search” –Instead SQL Query/ Join

Free Database – Google/IFI Public Patents

Free Database – EBI Data

Free Database – USPTO PAIR/PEDS

Paid Table – IFI Data Enrichments & others

Private Personal Data

Private Corporate Data

Go

ogl

e B

igQ

uer

y Reports based on Connecting Data

from Multiple Tables Together

What is BigQuery?

• Enterprise Cloud Data Warehouse• BigQuery is Google's fully managed, petabyte scale, low

cost enterprise data warehouse.

• Low cost – but not free.

• A powerful Big Data analytics platform • Analyze large datasets to find meaningful insights using

familiar SQL

• Join public, private, free and paid datasets – Including Patent Data

© 2018

Example – Full Text Search

© 2018

IFI Global Patent Database

IFI CLAIMS Direct

"VEGF receptor kinase inhibitor“

(vascular endothelial growth factor)

2,294 Results

Assign a “Relevance Score” and load into BigQuery as a private table.

VEGF_Receptor.LCPatents – private table,ordered by my private relevance field

© 2018

LCPatents (private)lc_number lc_score

US-20130053409-A1 112

WO-2009053737-A2 116

US-20030144298-A1 126

US-20030055006-A1 130

JP-2002536414-A 132

CN-103702990-A 137

WO-2008078091-A1 142

EP-2269603-A1 146

EP-2783686-B1 146

US-8410131-B2 146

LCPatents (private) – Public Data,ordered by my private relevance field

© 2018

LCPatents (private) patents-public-data.patents.publications

Row lc_number lc_score text

1 US-8778962-B2 148 Treatment of solid tumors with rapamycin derivatives

2 WO-2013014448-A1 1482 - (2, 4, 5 - substituted -anilino) pyrimidine derivatives as egfrmodulators useful for treating cancer

3 EP-2269604-A1 147 Treatment of solid tumours with rapamycin derivatives

4 RU-2325906-C2 147 Cancer medical treatment

5 EP-2269603-B1 146Treatment of breast tumors with a rapamycin derivative in combination with exemestane

6 EP-2783686-A1 146Combination of a rapamycin derivative and letrozole for treating breast cancer

7 EP-2269604-B1 146 Treatment of solid kidney tumours with a rapamycin derivative

8 US-8877771-B2 146 Treatment of solid tumors with rapamycin derivatives

9 EP-2269603-A1 146 Treatment of solid tumours with rapamycin derivatives

LCPatents (private) – Public Data,ordered by my private relevance field

© 2018

SELECT lc.lc_number, lc.lc_score, ttl.text

FROM `patents-public-data.patents.publications` AS ppd,

UNNEST(title_localized) AS ttl

JOIN `civil-dolphin-136720.VEGF_Receptor.LCPatents` AS lc

ON lc.lc_number = ppd.publication_number

WHERE ttl.language = "en"

ORDER BY lc.lc_score DESC

LCPatents - IFI Private Data: COUNT

© 2017

Row assignee Total1 AstraZeneca AB 102

2 Astex Therapeutics Ltd 84

3 Cancer Research Technology Ltd 33

4 NeuPharma Inc 32

5 Novartis AG 25

6 ForSight Vision4 Inc 22

7 Merck Sharp & Dohme Corp 21

8 Kinex Pharmaceuticals LLC 19

9 Eisai R&D Management Co Ltd 16

10 Novartis Pharma GmbH 15

11 University of Chicago 11

12 Medimmune Ltd 10

LCPatents IFI Data Enrichments

LCPatents - IFI Private Data: COUNT

© 2017

SELECT assignee, COUNT(IFI.publication_number) AS Total

FROM `striking-joy-185312.IFIDataEnrichments.IFIDataEnrichments` AS IFI,

UNNEST(original_assignee) AS assignee


ON IFI.publication_number = lc.lc_number

GROUP BY assignee ORDER BY Total DESC

© 2017

LCPatents (private) – Public Data –IFI Paid Data

Row lc_number lc_score family_idpriority_

datecurrent_ assignee

legal_ status

1 JP-2004525899-A 152 26245731 20010219 Granted

2 WO-2013014448-A1 148 46875901 20110727

3 US-8778962-B2 148 26245731 20010219Novartis

Pharmaceuticals Corp

Active

4 EP-2269604-A1 147 26245731 20010219 Novartis AG Granted

5 RU-2325906-C2 147 26245731 20010219

6 CA-2438504-A1 146 26245731 20010219 Novartis AG Granted

7 CA-2438504-C 146 26245731 20010219 Novartis AG Active

8 EP-2764865-A2 146 26245731 20010219Novartis Pharma

GmbHWithdrawn

Novartis AG

9 EP-2762140-A1 146 26245731 20010219 Novartis AG Granted

LCPatents patents-public-data IFI Data Enrichments

LCPatents (private) – Public Data –IFI Paid Data

© 2017

SELECT lc.lc_number, lc.lc_score, ppd.family_id, ppd.priority_date,

IFI.current_assignee, IFI.legal_status

FROM `striking-joy-185312.IFIDataEnrichments.IFIDataEnrichments` AS IFI


ON IFI.publication_number = lc.lc_number

JOIN `patents-public-data.patents.publications` AS ppd

ON lc.lc_number = ppd.publication_number

ORDER BY lc.lc_score DESC

SureChEMBL for LCPatents

© 2017

Row lc_number schembl_id smiles inchi_key field

1 US-20100092474-A1 SCHEMBL8755 COC1=CC=C(CN)C=C1IDPURXSQCKYKIJ-UHFFFAOYSA-N

5

2 WO-2008044041-A1 SCHEMBL8755 COC1=CC=C(CN)C=C1IDPURXSQCKYKIJ-UHFFFAOYSA-N

5

3 WO-2008044045-A1 SCHEMBL8755 COC1=CC=C(CN)C=C1IDPURXSQCKYKIJ-UHFFFAOYSA-N

5


5


5

6 US-7329660-B2 SCHEMBL104340 CC(C)C1=CC(N)=CC=C1XCCNRBCNYGWTQX-UHFFFAOYSA-N

5

7 WO-2008002674-A2 SCHEMBL133876 COC1=CC(O)=C(C=O)C=C1WZUODJNEIXSNEU-UHFFFAOYSA-N

5

8 WO-2014037750-A1 SCHEMBL309636 CCOC1=CC(Br)=CC=C1[N+]([O-])=OSVFZXFVVGNPTEF-UHFFFAOYSA-N

5

9 US-20100092474-A1 SCHEMBL383820 COC1=CC(C(O)=O)=C(C=C1)C(O)=OJKZSIEDAEHZAHQ-UHFFFAOYSA-N

5

10 WO-2008044041-A1 SCHEMBL383820 COC1=CC(C(O)=O)=C(C=C1)C(O)=OJKZSIEDAEHZAHQ-UHFFFAOYSA-N

5

LCPatents Ebi_surechembl

SureChEMBL for LCPatents

© 2017

SELECT v.lc_number, ebi.schembl_id, ebi.smiles, ebi.inchi_key, ebi.field

FROM `patents-public-data.ebi_surechembl.map` AS ebi

JOIN `civil-dolphin-136720.VEGF_Receptor.LCPatents` AS v

ON v.lc_number = ebi.patent_id

WHERE ebi.field = "5"

LIMIT 100

ChEMBL Compound, Site, Target

© 2017

Row standard_inchi_key compound_name site_name target_type pref_name

61HUMNYLRZRPPJDN-UHFFFAOYSA-N

Benzaldehyde Tyrosinase, Tyrosinase domain SINGLE PROTEIN Tyrosinase





64WGQKYBSKWIADBV-UHFFFAOYSA-N

Benzyl aminePhenylethanolamine N-methyltransferase, NNMT_PNMT_TEMT domain

SINGLE PROTEINPhenylethanolamine N-methyltransferase










68XKJCHHZQLQNZHY-UHFFFAOYSA-N

SID144208998Monoamine oxidase A, Amino_oxidase domain

SINGLE PROTEIN Monoamine oxidase A

69XKJCHHZQLQNZHY-UHFFFAOYSA-N

SID144208998Monoamine oxidase B, Amino_oxidase domain

SINGLE PROTEIN Monoamine oxidase B

ChEMBL Compount, Site, Target

© 2017

SELECT cs.standard_inchi_key, cr.compound_name, bs.site_name, td.target_type, td.pref_nameFROM `patents-public-data.ebi_chembl.target_dictionary_23` AS tdJOIN `patents-public-data.ebi_chembl.binding_sites_23` AS bsON td.tid = bs.tid

JOIN `patents-public-data.ebi_chembl.predicted_binding_domains_23` AS pbdON bs.site_id = pbd.site_id

JOIN `patents-public-data.ebi_chembl.activities_23` AS actON pbd.activity_id = act.activity_id

JOIN `patents-public-data.ebi_chembl.compound_structures_23` AS csON act.molregno = cs.molregno

JOIN `patents-public-data.ebi_chembl.compound_records_23` AS crON cr.molregno = cs.molregno

WHERE cs.standard_inchi_key IN("JOXIMZWYDAKGHI-UHFFFAOYSA-N","XKJCHHZQLQNZHY-UHFFFAOYSA-N","RMVRSNDYEFQCLF-UHFFFAOYSA-N","WVDDGKGOMKODPV-UHFFFAOYSA-N","VODUKXHGDCJEOZ-YUMQZZPRSA-N","LGRFSURHDFAFJT-UHFFFAOYSA-N","WGQKYBSKWIADBV-UHFFFAOYSA-N","VOLRSQPSJGXRNJ-UHFFFAOYSA-N","WFQDTOYDVUWQMS-UHFFFAOYSA-N","HUMNYLRZRPPJDN-UHFFFAOYSA-N","RWZYAGGXGHYGMB-UHFFFAOYSA-N","DGJKKXAFDOWIQI-UHFFFAOYSA-N","KHBQMWCZKVMBLN-UHFFFAOYSA-N","KWOLFJPFCHCOCG-UHFFFAOYSA-N")

EBI – European Biomedical Institute on BigQuery

© 2018

ebi_chembl ebi_surechembl• Activities • Smiles

• Assays • Inchi_Key

• Components • Patent_ID

• Compounds

• Drug Indications

• Drug Mechanisms

• Molecules

• Proteins

• Targets

BigQuery Console

© 2018

LCPatents – USPTO OCE Office Actions

© 2018

LCPatents (private) uspto_oce_office_actions

1 of 1495 rows shown

Rowpublication_

numberapp_id action_type claim_numbers

1 US-8298578-B2 13252942 1031,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26

2 US-9556120-B2 14554495nonstatutory double patenting

6,7,8,9,10,11,12,13,14,15,16,17

3 US-9572800-B2 15086485 103 1,2,3,4,5,6,7,8,9,10,11,12,13


1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20


1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38


23,24,25,26,27,28,29,30


1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24

8 US-8642610-B2 13366726 1129,11,12,13,14,15,16,17,18,19,20,21,35,48,49,50,51,52,53,112


1,2,3,4,5,6,7,8,9,10,11,12

10 US-8277830-B2 13252998 1031,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29

LCPatents (private) uspto_oce_office_actions

USPTO OCE Office Actions

© 2017

SELECT patents.publication_number, oa.app_id, oa.action_type,

oa.claim_numbers

FROM `patents-public-data.uspto_oce_office_actions.rejections` AS oa

JOIN `patents-public-data.uspto_oce_office_actions.match_app` AS match

ON oa.app_id = match.app_id

JOIN `patents-public-data.patents.publications` AS patents

ON match.application_number = patents.application_number

JOIN `civil-dolphin-136720.VEGF_Receptor.LCPatents` AS VEGF

ON VEGF.lc_number = patents.publication_number

USPTO PTAB Cases

© 2017

SELECT ptab.PatentOwnerName, ptab.PatentNumber, ptab.PetitionerPartyName,

ptab.TrialNumber, ptab.ProsecutionStatus, IFI.original_assignee

FROM `patents-public-data.uspto_ptab.trials` AS ptab

JOIN `patents-public-data.uspto_ptab.match` AS ptab_match

ON ptab.ApplicationNumber = ptab_match.ApplicationNumber

JOIN `patents-public-data.patents.publications` AS PUBLIC

ON PUBLIC.application_number = ptab_match.application_number

JOIN `striking-joy-185312.IFIDataEnrichments.IFIDataEnrichments` AS IFI

ON IFI.publication_number = PUBLIC.publication_number

JOIN `civil-dolphin-136720.VEGF_Receptor.LCPatents` AS VEGF

ON VEGF.lc_number = IFI.publication_number

RowPatentOwner

NamePatentNumber

Petitioner PartyName

TrialNumberProsecution

Statusoriginal_ assignee

1 Lane et al 8410131Breckenridge

Pharmaceutial, Inc.IPR2017-01592

Notice OF Filing Date Accorded

Novartis Pharmaceuticals

Corp

Patent Data on BigQuery Enhances your Search Results

© 2018

Public PatentData(free)

SureChEMBL(free)

IFI DataEnhancements

(paid)

Office Actions(free)

uspto

uspto

PAIR, PTAB(free)

Private, On-Premise Data

(e.g., Docket)

Search ResultPortfolio

orAny List

A Better Search Report

JOIN

What this means to you

• BigQuery does not replace your text, semantic or structure based search tools

• BigQuery does let you make your search results more useful for:• Your Legal Team

• Your Business Sponsors

• Your Research Partners

© 2018

SECRET Data Fields!

© 2017

VEGF patents with secret data code.

The secret code cannot be visible to Google (even the Google Enterprise Cloud)

Tableau Desktop + BigQuery

© 2017

BigQuery SQL Query Excel file on Desktoppub number

Data join is created used publication_number. “Secret Code” is never transmitted to Google

Resources

• https://cloud.google.com/ - Google Cloud Platform> Launcher for Google Patents Public Data

• Google Announcement

• https://github.com/google/patents-public-data - GitHub Home for Google Patents

• Public Patent Data Now Available on Google BigQuery - IFI Blog Post on BigQuery, with examples

• IFI Data Enrichments – Information on IFI’s paid data enrichments

• W3 Schools SQL - SQL Reference

© 2018

Support comes with an IFI Data Enrichments Subscription!

https://cloud.google.com/https://cloud.google.com/blog/big-data/2017/10/google-patents-public-datasets-connecting-public-paid-and-private-patent-datahttps://cloud.google.com/blog/big-data/2017/10/google-patents-public-datasets-connecting-public-paid-and-private-patent-datahttps://www.ificlaims.com/news/view/blog-posts/public-patent-data-now.htmhttps://www.ificlaims.com/bigquery.htmhttps://www.w3schools.com/sql/sql_quickref.asp

Documents

Uniting Patent Data Sources with BigQuery · 2019. 11. 4. · Row standard_inchi_key compound_name site_name target_type pref_name 61 HUMNYLRZRPPJDN-UHFFFAOYSA-N Benzaldehyde Tyrosinase,