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Fig
ure
II.1
.1S
D: I
ngen
uity
Pat
hway
out
put o
f th
e m
utat
iona
l-ba
sed
anal
ysis
, sho
win
g id
enti
fied
(B
old)
up
(red
) or
dow
n (g
reen
) re
gula
ted
prot
eins
and
thei
r in
volv
emen
t in
sign
ific
ant
biol
ogic
al p
roce
sses
. A s
tati
stic
sco
re is
att
ribu
ted
indi
cati
ng th
e pr
obab
ilit
y of
the
biol
ogic
al
proc
ess
assi
gned
is n
ot a
ran
dom
eve
nt b
ut it
is d
epen
dent
of
the
prot
eins
iden
tifi
ed.
Fig
ure
II.1
.2S
D: I
ngen
uity
Pat
hway
out
put o
f th
e re
spir
ator
y-ba
sed
anal
ysis
, sho
win
g id
enti
fied
(B
old)
up
(red
) or
dow
n (g
reen
) re
gula
ted
prot
eins
and
thei
r in
volv
emen
t in
sign
ific
ant b
iolo
gica
l pro
cess
es. A
sta
tist
ic s
core
is a
ttri
bute
d in
dica
ting
the
prob
abil
ity
of th
e bi
olog
ical
pro
cess
ass
igne
d is
not
a r
ando
m e
vent
but
it is
dep
ende
nt o
f th
e pr
otei
ns id
enti
fied
.