#chrom TES TES+1 name2 strand strand txStart txEndchr17 6010 6011 DOC2B - - 6010 31420chr4_ctg9_hap1 6026 6027 YTHDC1 - - 6026 45746chr4_ctg9_hap1 6026 6027 YTHDC1 - - 6026 45746chr1 14361 14362 WASH7P - - 14361 29370chr9 14510 14511 WASH1 - - 14510 29739chrUn_gl000222 15193 15194 MIR4273 - - 15193 15277chr6_cox_hap2 24932 24933 GPX5 + + 15992 24932chr6_cox_hap2 24932 24933 GPX5 + + 15992 24932chrUn_gl000228 29338 29339 FRG2 - - 29338 32226chrUn_gl000228 29338 29339 LOC100288255 - - 29338 32226chr9 34393 34394 FAM138C - - 34393 35864chr1 34610 34611 FAM138A - - 34610 36081chr1 34610 34611 FAM138F - - 34610 36081chr1_gl000191_random 36272 36273 SRSF10 - - 36272 50281chr1_gl000191_random 36272 36273 SRSF10 - - 36272 50281chr1_gl000191_random 36272 36273 SRSF10 - - 36272 50281chr1_gl000191_random 36272 36273 SRSF10 - - 36272 50281chr1_gl000191_random 36272 36273 SRSF10 - - 36272 50281chr19_gl000209_random 36449 36450 KIR2DL2 + + 21910 36449chrUn_gl000218 38785 38786 LOC100233156 - - 38785 97454chrUn_gl000218 38785 38786 LOC100233156 - - 38785 97454chr2 38813 38814 FAM110C - - 38813 46588chr1_gl000191_random 38911 38912 SRSF10 - - 38911 50281chr1_gl000191_random 38911 38912 SRSF10 - - 38911 50281chrUn_gl000223 42779 42780 ZNF84 - - 42779 68685chrUn_gl000223 42779 42780 ZNF84 - - 42779 68787chr7_gl000195_random 42937 42938 LOC389831 - - 4293786719chrUn_gl000218 46844 46845 LOC389834 - - 46844 55049chr4_gl000193_random 49162 49163 MGC39584 - - 4916288375chr4_gl000194_random 53588 53589 MAFIP - - 53588 115010chr4_gl000194_random 53593 53594 LOC100132288 - - 53593115055chrUn_gl000219 56348 56349 LOC283788 - - 56348 99642chrUn_gl000212 60768 60769 NCRNA00281 + + 24048 60768chr19 60950 60951 WASH5P - - 60950 70966chr6_cox_hap2 61610 61611 SCAND3 - - 61610 77316chr17 62179 62180 RPH3AL - - 62179 202633chr17 62179 62180 RPH3AL - - 62179 202633chr17 62179 62180 RPH3AL - - 62179 202633chr17 62179 62180 RPH3AL - - 62179 202633chr19_gl000209_random 68123 68124 KIR2DL4 + + 57208 68123chr19_gl000209_random 68123 68124 KIR2DL4 + + 57208 68123chr19_gl000209_random 68123 68124 KIR2DL4 + + 57208 68123chr1 70008 70009 OR4F5 + + 69090 70008chrUn_gl000228 74249 74250 DUX2 + + 72705 74249chrUn_gl000228 74249 74250 DUX4 + + 72631 74249chrUn_gl000228 74249 74250 DUX4L2 + + 72634 74249chrUn_gl000228 74249 74250 DUX4L3 + + 72634 74249chrUn_gl000228 74249 74250 DUX4L5 + + 72634 74249chrUn_gl000228 74249 74250 DUX4L6 + + 72634 74249chrUn_gl000222 74364 74365 LOC401074 - - 74364 81241chrUn_gl000222 74364 74365 LOC401074 - - 74364 81351chr19 76219 76220 FAM138A - - 76219 77690chr19 76219 76220 FAM138F - - 76219 77690chr20 77296 77297 DEFB125 + + 68350 77296chrUn_gl000228 77555 77556 DUX2 + + 76011 77555chrUn_gl000228 77555 77556 DUX4 + + 75932 77555

chrUn_gl000228 77555 77556 DUX4L2 + + 75940 77555chrUn_gl000228 77555 77556 DUX4L3 + + 75940 77555chrUn_gl000228 77555 77556 DUX4L5 + + 75940 77555chrUn_gl000228 77555 77556 DUX4L6 + + 75940 77555chrUn_gl000228 80861 80862 DUX2 + + 79317 80861chrUn_gl000228 80861 80862 DUX4 + + 79243 80861chrUn_gl000228 80861 80862 DUX4L2 + + 79246 80861chrUn_gl000228 80861 80862 DUX4L3 + + 79246 80861chrUn_gl000228 80861 80862 DUX4L5 + + 79246 80861chrUn_gl000228 80861 80862 DUX4L6 + + 79246 80861chrUn_gl000228 84167 84168 DUX2 + + 82623 84167chrUn_gl000228 84167 84168 DUX4 + + 82544 84167chrUn_gl000228 84167 84168 DUX4L2 + + 82552 84167chrUn_gl000228 84167 84168 DUX4L3 + + 82552 84167chrUn_gl000228 84167 84168 DUX4L5 + + 82552 84167chrUn_gl000228 84167 84168 DUX4L6 + + 82552 84167chr19_gl000209_random 84658 84659 KIR3DS1 + + 70096 84658chr17_ctg5_hap1 86403 86404 ARHGAP27 - - 86403 118136chrUn_gl000222 86422 86423 FLJ20518 - - 86422 89310chrUn_gl000222 86422 86423 FRG2C - - 86422 89304chrUn_gl000228 87473 87474 DUX2 + + 85929 87473chrUn_gl000228 87473 87474 DUX4 + + 85855 87473chrUn_gl000228 87473 87474 DUX4L2 + + 85858 87473chrUn_gl000228 87473 87474 DUX4L3 + + 85858 87473chrUn_gl000228 87473 87474 DUX4L5 + + 85858 87473chrUn_gl000228 87473 87474 DUX4L6 + + 85858 87473chr4 88099 88100 ZNF595 + + 53226 88099chrUn_gl000228 90779 90780 DUX2 + + 89235 90779chrUn_gl000228 90779 90780 DUX4 + + 89161 90779chrUn_gl000228 90779 90780 DUX4L2 + + 89164 90779chrUn_gl000228 90779 90780 DUX4L3 + + 89164 90779chrUn_gl000228 90779 90780 DUX4L5 + + 89164 90779chrUn_gl000228 90779 90780 DUX4L6 + + 89164 90779chr12 91263 91264 LOC100288778 + + 87983 91263chr10 92827 92828 TUBB8 - - 92827 95178chrUn_gl000211 93165 93166 FLJ43315 + + 48502 93165chrUn_gl000223 93510 93511 ZNF26 - - 93510 119608chrUn_gl000228 94085 94086 DUX2 + + 92541 94085chrUn_gl000228 94085 94086 DUX4L2 + + 92470 94085chrUn_gl000228 94085 94086 DUX4L3 + + 92470 94085chrUn_gl000228 94085 94086 DUX4L5 + + 92470 94085chrUn_gl000228 94085 94086 DUX4L6 + + 92470 94085chr19_gl000209_random 96155 96156 KIR2DL5A + + 8669096155chr19_gl000209_random 96246 96247 KIR2DL5B + + 8674596246chr16 96978 96979 POLR3K - - 96978 103632chrUn_gl000228 97391 97392 DUX2 + + 95847 97391chrUn_gl000228 97391 97392 DUX4 + + 95773 97391chrUn_gl000228 97391 97392 DUX4L2 + + 95776 97391chrUn_gl000228 97391 97392 DUX4L3 + + 95776 97391chrUn_gl000228 97391 97392 DUX4L5 + + 95776 97391chrUn_gl000228 97391 97392 DUX4L6 + + 95776 97391chrUn_gl000228 100697 100698 DUX2 + + 99153 100697chrUn_gl000228 100697 100698 DUX4L2 + + 99082 100697chrUn_gl000228 100697 100698 DUX4L3 + + 99082 100697chrUn_gl000228 100697 100698 DUX4L5 + + 99082 100697chrUn_gl000228 100697 100698 DUX4L6 + + 99082 100697chrUn_gl000228 104003 104004 DUX2 + + 102459 104003chrUn_gl000228 104003 104004 DUX4 + + 102385 104003

chrUn_gl000228 104003 104004 DUX4L2 + + 102388 104003chrUn_gl000228 104003 104004 DUX4L3 + + 102388 104003chrUn_gl000228 104003 104004 DUX4L5 + + 102388 104003chrUn_gl000228 104003 104004 DUX4L6 + + 102388 104003chrUn_gl000228 107309 107310 DUX4 + + 105686 107309chr16 107669 107670 SNRNP25 + + 103828 107669chr16 108057 108058 RHBDF1 - - 108057 122629chr19 111596 111597 OR4F17 + + 110678 111596chrUn_gl000220 112180 112181 RN5-8S1 + + 112024 112180chr19_gl000209_random 112667 112668 KIR2DS3 + + 98134 112667chr19_gl000209_random 113132 113133 KIR2DS5 + + 98111 113132chrUn_gl000228 113921 113922 DUX4 + + 112298 113921chrUn_gl000228 114676 114677 DUX4 + + 112604 114676chrUn_gl000228 114676 114677 DUX4 + + 112604 114676chr8 116085 116086 OR4F21 - - 116085 117024chr9 116233 116234 FOXD4 - - 116233 118417chr17_gl000205_random 119732 119733 MGC70870 + + 116622119732chr9 121037 121038 CBWD1 - - 121037 179075chr9 121037 121038 CBWD1 - - 121037 179075chr9 121037 121038 CBWD1 - - 121037 179075chr17_ctg5_hap1 121842 121843 ARHGAP27 - - 121842 125407chr18 122222 122223 ROCK1P1 + + 109064 122222chr20 126392 126393 DEFB126 + + 123251 126392chrUn_gl000220 126696 126697 LOC100507412 + + 97128 126696chr11 126986 126987 LOC100133161 - - 126986 131920chr17_ctg5_hap1 128327 128328 PLEKHM1 - - 128327 183214chr17_ctg5_hap1 128327 128328 PLEKHM1 - - 128327 183214chr17_ctg5_hap1 128327 128328 PLEKHM1 - - 128327 183214chr19_gl000209_random 129113 129114 KIR2DS1 + + 115098 129113chr6_apd_hap1 130802 130803 LOC401242 - - 130802 134855chr6_qbl_hap6 130802 130803 LOC401242 - - 130802 134855chr6_mann_hap4 130802 130803 LOC401242 - - 130802 134855chr6_mcf_hap5 130806 130807 LOC401242 - - 130806 134856chr6_dbb_hap3 130811 130812 LOC401242 - - 130811 134864chr16 135803 135804 NPRL3 - - 135803 188672chr16 135803 135804 NPRL3 - - 135803 188610chr16 135843 135844 MPG + + 128168 135843chr16 135843 135844 MPG + + 127017 135843chr16 135843 135844 MPG + + 128168 135843chr1 136697 136698 LOC729737 - - 136697 140566chr20 139804 139805 DEFB127 + + 138185 139804chr19_gl000209_random 145745 145746 KIR2DS2 + + 131448 145745chr12 147945 147946 FAM138D - - 147945 149412chrUn_gl000220 156152 156153 RN5-8S1 + + 155996 156152chr4 156490 156491 ZNF718 + + 53276 156490chr8 158344 158345 RPL23AP53 - - 158344 182318chr17_ctg5_hap1 167791 167792 MIR4315-1 - - 167791 167864chr17_ctg5_hap1 167791 167792 MIR4315-2 - - 167791 167864chr6_ssto_hap7 168170 168171 LOC401242 - - 168170 172220chr20 168526 168527 DEFB128 - - 168526 170264chrY 170022 170023 PLCXD1 + + 148060 170022chrY 170022 170023 PLCXD1 + + 142990 170022chrY 171425 171426 GTPBP6 - - 171425 180887chr6_apd_hap1 174179 174180 TRIM27 - - 174179 195170chr6_qbl_hap6 174179 174180 TRIM27 - - 174179 195169chr6_mcf_hap5 174341 174342 TRIM27 - - 174341 195331chr5 190087 190088 PLEKHG4B + + 140372 190087chr6_mann_hap4 191189 191190 TRIM27 - - 191189 195170chr4_ctg9_hap1 193241 193242 TMPRSS11E + + 143088 193241

chr11 194500 194501 LOC653486 + + 193079 194500chr11 194573 194574 SCGB1C1 + + 193079 194573chr5 195468 195469 LRRC14B + + 191625 195468chr19 197015 197016 FLJ45445 - - 197015 202209chr8 197339 197340 ZNF596 + + 182383 197339chr8 197339 197340 ZNF596 + + 182383 197339chr8 197339 197340 ZNF596 + + 182199 197339chr17_ctg5_hap1 197705 197706 LRRC37A2 - - 197705 240669chr17_ctg5_hap1 197720 197721 LRRC37A4 - - 197720 424115chr11 200258 200259 ODF3 + + 196760 200258chr17_ctg5_hap1 200597 200598 ARL17A + + 195720 200597chr11 202923 202924 BET1L - - 202923 207422chr11 202923 202924 BET1L - - 202923 207422chr16 204504 204505 HBZ + + 202853 204504chr5 204874 204875 CCDC127 - - 204874 218297chr20 210527 210528 DEFB129 + + 207898 210527chr6_ssto_hap7 211701 211702 TRIM27 - - 211701 232682chr9 213107 213108 C9orf66 - - 213107 215893chr18 213739 213740 USP14 + + 158482 213739chr18 213739 213740 USP14 + + 158482 213739chr18 214519 214520 THOC1 - - 214519 268059chr11 215029 215030 SIRT3 - - 215029 236362chr11 215029 215030 SIRT3 - - 215029 236362chr11 215110 215111 RIC8A + + 208529 215110chr16 216767 216768 HBM + + 215972 216767chr2 218135 218136 SH3YL1 - - 218135 264068chr2 218135 218136 SH3YL1 - - 218135 264068chrX 220022 220023 PLCXD1 + + 192990 220022chrX 220022 220023 PLCXD1 + + 198060 220022chrX 221425 221426 GTPBP6 - - 221425 230887chr16 223709 223710 HBA2 + + 222845 223709chr4_ctg9_hap1 224703 224704 UGT2B17 - - 224703 248966chr4_ctg9_hap1 224913 224914 UGT2B15 - - 224913 248961chr16 227520 227521 HBA1 + + 226678 227520chr16 231178 231179 HBQ1 + + 230332 231178chrY 232054 232055 PPP2R3B-AS1 + + 231384 232054chrY 232054 232055 PPP2R3B-AS1 + + 231384 232054chr17_ctg5_hap1 236665 236666 ARL17A + + 236131 236665chr16 238969 238970 LUC7L - - 238969 279449chr16 238973 238974 LUC7L - - 238973 279449chr20 241736 241737 DEFB132 + + 238376 241736chrY 244667 244668 PPP2R3B - - 244667 297690chr12 246576 246577 LOC574538 - - 246576 258332chr4 249773 249774 ZNF876P + + 206388 249773chr20 251503 251504 C20orf96 - - 251503 271419chr20 251503 251504 C20orf96 - - 251503 271419chr11 252984 252985 PSMD13 + + 236807 252984chr11 252984 252985 PSMD13 + + 236807 252984chr5 256814 256815 SDHA + + 218355 256814chr17 264457 264458 C17orf97 + + 260117 264457chr4 264463 264464 ZNF732 - - 264463 289944chr6_qbl_hap6 265990 265991 ZNF311 - - 265990 276434chr6_mann_hap4 265994 265995 ZNF311 - - 265994 276438chr6_dbb_hap3 266004 266005 ZNF311 - - 266004 276448chr6_apd_hap1 266034 266035 ZNF311 - - 266034 276479chr17_ctg5_hap1 266211 266212 NSF - - 266211 380615chr2 272481 272482 ACP1 + + 264868 272481chr2 278282 278283 ACP1 + + 264868 278282chr2 278282 278283 ACP1 + + 264868 278282chr2 278282 278283 ACP1 + + 264868 278282

chr2 279560 279561 FAM150B - - 279560 288308chr12 280494 280495 IQSEC3 + + 186541 280494chr20 280963 280964 ZCCHC3 + + 278203 280963chr19 281043 281044 PPAP2C - - 281043 291435chr19 281043 281044 PPAP2C - - 281043 291435chr19 281043 281044 PPAP2C - - 281043 291169chrX 282054 282055 PPP2R3B-AS1 + + 281384 282054chrX 282054 282055 PPP2R3B-AS1 + + 281384 282054chr11 285304 285305 NLRP6 + + 278569 285304chr12 287625 287626 IQSEC3 + + 176048 287625chr17 289770 289771 FAM101B - - 289770 295731chrX 294667 294668 PPP2R3B - - 294667 347690chr11 295688 295689 ATHL1 + + 289137 295688chr10 295729 295730 ZMYND11 + + 180423 295729chr10 295729 295730 ZMYND11 + + 225933 295729chr10 295729 295730 ZMYND11 + + 225933 295729chr11 298202 298203 IFITM5 - - 298202 299526chr12 299242 299243 SLC6A12 - - 299242 322863chr12 299242 299243 SLC6A12 - - 299242 322613chr12 299242 299243 SLC6A12 - - 299242 323371chr12 299242 299243 SLC6A12 - - 299242 323371chr10 300577 300578 ZMYND11 + + 180404 300577chr10 300577 300578 ZMYND11 + + 180423 300577chr10 300577 300578 ZMYND11 + + 180423 300577chr10 300577 300578 ZMYND11 + + 181423 300577chr7 300711 300712 FAM20C + + 192968 300711chr6_ssto_hap7 303579 303580 ZNF311 - - 303579 313918chr19 305574 305575 MIER2 - - 305574 344791chr11 309410 309411 IFITM2 + + 308106 309410chr20 310867 310868 SOX12 + + 306238 310867chr5 315089 315090 PDCD6 + + 271735 315089chr11 315272 315273 IFITM1 + + 313990 315272chr6_qbl_hap6 315386 315387 OR2W1 - - 315386 316349chr6_mann_hap4 315390 315391 OR2W1 - - 315390 316353chr6_dbb_hap3 315400 315401 OR2W1 - - 315400 316363chr6_apd_hap1 315431 315432 OR2W1 - - 315431 316394chr6_mcf_hap5 315539 315540 OR2W1 - - 315539 316502chr6_apd_hap1 315573 315574 LOC100129636 + + 307441 315573chr16 316119 316120 ITFG3 + + 284800 316119chr16 318309 318310 RGS11 - - 318309 325914chr16 318309 318310 RGS11 - - 318309 325914chr18 319354 319355 COLEC12 - - 319354 500729chr11 319672 319673 IFITM3 - - 319672 320914chr10 320129 320130 DIP2C - - 320129 735608chr1 328581 328582 LOC100132062 + + 323891 328581chr1 328581 328582 LOC100132287 + + 323891 328581chr1 328581 328582 LOC100133331 + + 323891 328581chr12 329788 329789 SLC6A13 - - 329788 372039chr12 329788 329789 SLC6A13 - - 329788 372039chr17_ctg5_hap1 330260 330261 NSFP1 - - 330260 380553chr7 331454 331455 LOC100288524 + + 330135 331454chr16 333003 333004 ARHGDIG + + 330605 333003chr20 335512 335513 NRSN2 + + 327369 335512chr16 337209 337210 PDIA2 + + 333117 337209chr16 337439 337440 AXIN1 - - 337439 402676chr16 337439 337440 AXIN1 - - 337439 402676chr6_qbl_hap6 347916 347917 LOC100129636 + + 307396 347916chr6_mann_hap4 347917 347918 LOC100129636 + + 307400 347917chr6_dbb_hap3 347926 347927 LOC100129636 + + 307410 347926chr6_mcf_hap5 348067 348068 LOC100129636 + + 307554 348067

chr6_cox_hap2 350247 350248 LOC401242 - - 350247 354323chr6 351355 351356 DUSP22 + + 292100 351355chr6_ssto_hap7 352867 352868 OR2W1 - - 352867 353830chr6_qbl_hap6 357383 357384 OR2B3 - - 357383 358489chr6_mann_hap4 357385 357386 OR2B3 - - 357385 358491chr6_dbb_hap3 357393 357394 OR2B3 - - 357393 358499chr6_apd_hap1 357424 357425 OR2B3 - - 357424 358530chr6_mcf_hap5 357522 357523 OR2B3 - - 357522 358628chr19 362056 362057 THEG - - 362056 376009chr19 362056 362057 THEG - - 362056 376009chr4 367691 367692 ZNF141 + + 331595 367691chr12 368154 368155 SLC6A13 - - 368154 372039chr1 368597 368598 OR4F16 + + 367658 368597chr1 368597 368598 OR4F29 + + 367658 368597chr1 368597 368598 OR4F3 + + 367658 368597chr20 378203 378204 TRIB3 + + 361307 378203chr11 382117 382118 B4GALNT4 + + 369794 382117chr6_mann_hap4 384005 384006 OR2J3 + + 383069 384005chr6_qbl_hap6 384007 384008 OR2J3 + + 383071 384007chr6_dbb_hap3 384013 384014 OR2J3 + + 383077 384013chr6_apd_hap1 384040 384041 OR2J3 + + 383104 384040chr6_ssto_hap7 385401 385402 LOC100129636 + + 344879 385401chr12 389222 389223 KDM5A - - 389222 498620chr6_cox_hap2 393802 393803 TRIM27 - - 393802 414796chr6_ssto_hap7 394868 394869 OR2B3 - - 394868 395974chr5 403811 403812 LOC100310782 - - 403811 404662chr11 404908 404909 PKP3 + + 394216 404908chr19 405442 405443 C2CD4C - - 405442 409170chr11 405715 405716 SIGIRR - - 405715 417397chr11 405715 405716 SIGIRR - - 405715 414999chr11 405715 405716 SIGIRR - - 405715 417397chr4_ctg9_hap1 409992 409993 UGT2B10 + + 393963 409992chr4_ctg9_hap1 409992 409993 UGT2B10 + + 393963 409992chr6 411443 411444 IRF4 + + 391738 411443chr6 411443 411444 IRF4 + + 391738 411443chr6 411443 411444 IRF4 + + 391738 411443chr20 411610 411611 RBCK1 + + 388708 411610chr20 411610 411611 RBCK1 + + 388708 411610chr17 411907 411908 VPS53 - - 411907 618096chr17_ctg5_hap1 414020 414021 ARL17B + + 391611 414020chr17_ctg5_hap1 415626 415627 LRRC37A - - 415626 458604chr20 416123 416124 TBC1D20 - - 416123 443187chr19 416582 416583 SHC2 - - 416582 460996chr16 417383 417384 MRPL28 - - 417383 420569chr11 417929 417930 ANO9 - - 417929 442011chr17_ctg5_hap1 418517 418518 ARL17A + + 391582 418517chr4 419223 419224 ABCA11P - - 419223 467998chr8 419875 419876 FBXO25 + + 356807 419875chr8 419875 419876 FBXO25 + + 356807 419875chr8 419875 419876 FBXO25 + + 356807 419875chr16 420775 420776 TMEM8A - - 420775 431950chr6_ssto_hap7 421488 421489 OR2J3 + + 420552 421488chr7 422845 422846 LOC442497 + + 419390 422845chr4 433778 433779 ZNF721 - - 433778 493442chr17 435532 435533 VPS53 - - 435532 618096chr5 438405 438406 AHRR + + 304290 438405chr5 438405 438406 AHRR + + 304290 438405chr5 441642 441643 C5orf55 - - 441642 443258chr8 441645 441646 C8orf42 - - 441645 495331chr16 442960 442961 LOC100134368 + + 432240 442960

chr6_mann_hap4 445757 445758 OR2J2 + + 444716 445757chr6_qbl_hap6 445760 445761 OR2J2 + + 444719 445760chr6_dbb_hap3 445766 445767 OR2J2 + + 444725 445766chr6_apd_hap1 445794 445795 OR2J2 + + 444753 445794chr6_mcf_hap5 445883 445884 OR2J3 + + 383214 445883chr6_mcf_hap5 445896 445897 OR2J2 + + 444855 445896chr16 450754 450755 NME4 + + 447191 450754chr3 451097 451098 CHL1 + + 238649 451097chr17_ctg5_hap1 454187 454188 ARL17B + + 391611 454187chr17_ctg5_hap1 454600 454601 ARL17A + + 391582 454600chr16 462487 462488 DECR2 + + 451857 462487chr20 463337 463338 CSNK2A1 - - 463337 524482chr20 463337 463338 CSNK2A1 - - 463337 524482chr20 463337 463338 CSNK2A1 - - 463337 524482chr19 463345 463346 ODF3L2 - - 463345 474983chr9 465259 465260 DOCK8 + + 273047 465259chr9 465259 465260 DOCK8 + + 214864 465259chr9 465259 465260 DOCK8 + + 273047 465259chr5 467409 467410 EXOC3 + + 443333 467409chr5 470624 470625 PP7080 - - 470624 473080chr5 473333 473334 SLC9A3 - - 473333 524549chr6_cox_hap2 481392 481393 ZNF311 - - 481392 491846chr6_ssto_hap7 483240 483241 OR2J2 + + 482199 483240chr6 485137 485138 EXOC2 - - 485137 693109chr11 491387 491388 PTDSS2 + + 450279 491387chr11 494511 494512 RNH1 - - 494511 506821chr11 494511 494512 RNH1 - - 494511 506821chr11 494511 494512 RNH1 - - 494511 506821chr11 494511 494512 RNH1 - - 494511 507273chr11 494511 494512 RNH1 - - 494511 507273chr11 494511 494512 RNH1 - - 494511 507273chr11 494511 494512 RNH1 - - 494511 507273chr11 494511 494512 RNH1 - - 494511 506821chr19 505343 505344 MADCAM1 + + 496489 505343chr19 505343 505344 MADCAM1 + + 496489 505343chr4_ctg9_hap1 506427 506428 UGT2A3 - - 506427 529760chr4_ctg9_hap1 506427 506428 UGT2A3 - - 506427 529760chr19 519654 519655 C19orf20 + + 507496 519654chr6_cox_hap2 530806 530807 OR2W1 - - 530806 531769chr11 532241 532242 HRAS - - 532241 535550chr11 532241 532242 HRAS - - 532241 535550chr11 532241 532242 HRAS - - 532241 535550chr4 533320 533321 PIGG + + 492988 533320chr4 533320 533321 PIGG + + 492988 533320chr5 535954 535955 MIR4456 - - 535954 535997chr7 536896 536897 PDGFA - - 536896 559481chr7 536896 536897 PDGFA - - 536896 559481chr19 542087 542088 CDC34 + + 531732 542087chr19 549919 549920 GZMM + + 544026 549919chr12 551806 551807 CCDC77 + + 498515 551806chr12 551806 551807 CCDC77 + + 498515 551806chr12 551806 551807 CCDC77 + + 510740 551806chr12 551806 551807 CCDC77 + + 510740 551806chr11 554849 554850 C11orf35 - - 554849 560779chr11 554916 554917 LRRC56 + + 537521 554916chrY 557558 557559 SHOX + + 535078 557558chr6_cox_hap2 563332 563333 LOC100129636 + + 522819 563332chr11 564025 564026 RASSF7 + + 560970 564025chr11 564025 564026 RASSF7 + + 561449 564025chr11 564025 564026 RASSF7 + + 561449 564025

chr7 564869 564870 FLJ44511 + + 560027 564869chr11 565656 565657 MIR210HG - - 565656 568457chr11 568088 568089 MIR210 - - 568088 568198chrY 570146 570147 SHOX + + 535078 570146chr16 572481 572482 RAB11FIP3 + + 475667 572481chr16 572481 572482 RAB11FIP3 + + 524849 572481chr6_cox_hap2 572857 572858 OR2B3 - - 572857 573963chr11 573807 573808 LOC143666 - - 573807 575885chr16 576846 576847 NCRNA00235 - - 576846 577407chr6_mann_hap4 578877 578878 OR14J1 + + 577911 578877chr6_dbb_hap3 578883 578884 OR14J1 + + 577917 578883chr6_apd_hap1 578915 578916 OR14J1 + + 577949 578915chr6_mcf_hap5 579063 579064 OR14J1 + + 578097 579063chr18 581524 581525 CETN1 + + 580368 581524chr4_ctg9_hap1 582545 582546 UGT2B10 - - 582545 587974chr4_ctg9_hap1 582545 582546 UGT2B10 - - 582545 587974chr19 583493 583494 BSG + + 572536 583493chr19 583493 583494 BSG + + 572536 583493chr19 583493 583494 BSG + + 571324 583493chr20 584636 584637 TCF15 - - 584636 590910chr7 588833 588834 PRKAR1B - - 588833 752844chr7 588833 588834 PRKAR1B - - 588833 767313chr7 588833 588834 PRKAR1B - - 588833 766978chr7 588833 588834 PRKAR1B - - 588833 767313chr7 588833 588834 PRKAR1B - - 588833 752577chr7 588833 588834 PRKAR1B - - 588833 752161chr17_ctg5_hap1 592235 592236 LOC644246 - - 592235 595386chr16 593366 593367 MIR3176 + + 593276 593366chr6_cox_hap2 599480 599481 OR2J3 + + 598544 599480chr16 604636 604637 SOLH + + 577855 604636chrX 607558 607559 SHOX + + 585078 607558chr11 612222 612223 PHRF1 + + 576482 612222chr11 612554 612555 IRF7 - - 612554 615728chr11 612554 612555 IRF7 - - 612554 615999chr11 612554 612555 IRF7 - - 612554 615999chr8 614199 614200 ERICH1 - - 614199 681226chr16 615529 615530 C16orf11 + + 610421 615529chr6_ssto_hap7 616386 616387 OR14J1 + + 615420 616386chr11 616564 616565 CDHR5 - - 616564 625067chr11 616564 616565 CDHR5 - - 616564 625067chr11 616564 616565 CDHR5 - - 616564 625067chr19 617159 617160 HCN2 + + 589892 617159chr19 617222 617223 POLRMT - - 617222 633568chr16 619495 619496 NHLRC4 + + 617031 619495chrX 620146 620147 SHOX + + 585078 620146chr1 621095 621096 OR4F16 - - 621095 622034chr1 621095 621096 OR4F29 - - 621095 622034chr1 621095 621096 OR4F3 - - 621095 622034chr11 626312 626313 SCT - - 626312 627173chr6_mann_hap4 626453 626454 OR5V1 - - 626453 627501chr6_mcf_hap5 626640 626641 OR5V1 - - 626640 627688chr20 627267 627268 SRXN1 - - 627267 633890chr16 634108 634109 PIGQ + + 620003 634108chr16 634109 634110 PIGQ + + 620003 634109chr11 640705 640706 DRD4 + + 637304 640705chr20 642239 642240 SCRT2 - - 642239 656823chr19 643604 643605 FGF22 + + 639925 643604chr11 644224 644225 DEAF1 - - 644224 695740chr6_mann_hap4 644332 644333 OR12D3 - - 644332 646201chr6_mcf_hap5 644520 644521 OR12D3 - - 644520 646389

chr6_dbb_hap3 644655 644656 OR12D3 - - 644655 646524chr17 646075 646076 FAM57A + + 635846 646075chr19 647525 647526 RNF126 - - 647525 663233chr17 647660 647661 GEMIN4 - - 647660 655501chr18 649619 649620 C18orf56 - - 649619 658340chr18 650293 650294 CLUL1 + + 616699 650293chr18 650293 650294 CLUL1 + + 596997 650293chr5 653666 653667 CEP72 + + 612404 653666chr6 655938 655939 HUS1B - - 655938 656964chr17 658576 658577 DBIL5P + + 655899 658576chr5 659976 659977 TPPP - - 659976 693510chr1 661138 661139 LOC100133331 - - 661138 665731chr6_cox_hap2 661223 661224 OR2J2 + + 660182 661223chr17 662548 662549 GLOD4 - - 662548 685571chr6_ssto_hap7 663978 663979 OR5V1 - - 663978 665026chr4 664681 664682 PDE6B + + 646965 664681chr4 664681 664682 PDE6B + + 619362 664681chr4 664681 664682 PDE6B + + 619362 664681chr4 666224 666225 ATP5I - - 666224 668127chr4 666224 666225 ATP5I - - 666224 668127chr2 667972 667973 TMEM18 - - 667972 677439chr6_mann_hap4 668436 668437 OR12D2 + + 667403 668436chr6_mcf_hap5 668630 668631 OR12D2 + + 667597 668630chr6_dbb_hap3 668765 668766 OR12D2 + + 667732 668765chr18 670323 670324 ENOSF1 - - 670323 712517chr18 670323 670324 ENOSF1 - - 670323 712662chr18 670323 670324 ENOSF1 - - 670323 712662chr12 671058 671059 B4GALNT3 + + 569542 671058chr12 673461 673462 NINJ2 - - 673461 772755chr18 673499 673500 TYMS + + 657603 673499chr4 675617 675618 MFSD7 - - 675617 682973chr4 675817 675818 MYL5 + + 671710 675817chr16 679273 679274 RAB40C + + 640076 679273chr16 679273 679274 RAB40C + + 640172 679273chr16 679273 679274 RAB40C + + 640076 679273chr16 679273 679274 RAB40C + + 639668 679273chr16 679273 679274 RAB40C + + 639356 679273chr6_ssto_hap7 681845 681846 OR12D3 - - 681845 683714chr19 683392 683393 FSTL3 + + 676388 683392chr16 684116 684117 WFIKKN1 + + 681011 684116chr16 684428 684429 C16orf13 - - 684428 686347chr16 684428 684429 C16orf13 - - 684428 686347chr16 684428 684429 C16orf13 - - 684428 686347chr16 684428 684429 C16orf13 - - 684428 686347chr16 684428 684429 C16orf13 - - 684428 686347chr19 685545 685546 PRSS57 - - 685545 695461chr17 695741 695742 RNMTL1 + + 685512 695741chr6_mann_hap4 696259 696260 OR11A1 - - 696259 698488chr6_mcf_hap5 696456 696457 OR11A1 - - 696456 698685chr6_qbl_hap6 696569 696570 OR11A1 - - 696569 698798chr6_dbb_hap3 696616 696617 OR11A1 - - 696616 698845chr6_apd_hap1 696762 696763 OR11A1 - - 696762 698991chr16 698474 698475 FAM195A + + 691848 698474chr10 698595 698596 C10orf108 + + 695887 698595chr1 700244 700245 LOC100288069 - - 700244 714068chr17 702552 702553 NXN - - 702552 882998chr17 702552 702553 NXN - - 702552 767351chr11 704129 704130 TMEM80 + + 695615 704129chr11 704129 704130 TMEM80 + + 695615 704129chr6_ssto_hap7 705974 705975 OR12D2 + + 704941 705974

chr10 711109 711110 C10orf108 + + 696016 711109chr6_mann_hap4 711732 711733 OR10C1 + + 710693 711732chr6_mcf_hap5 711931 711932 OR10C1 + + 710892 711931chr6_qbl_hap6 712042 712043 OR10C1 + + 711003 712042chr6_dbb_hap3 712084 712085 OR10C1 + + 711045 712084chr6_apd_hap1 712235 712236 OR10C1 + + 711196 712235chr16 717829 717830 WDR90 + + 699362 717829chr18 721591 721592 YES1 - - 721591 812327chr16 724171 724172 RHOT2 + + 718132 724171chr11 727727 727728 EPS8L2 + + 706119 727727chr16 728267 728268 RHBDL1 + + 726074 728267chr16 731666 731667 JMJD8 - - 731666 734439chr16 732768 732769 STUB1 + + 730114 732768chr6_ssto_hap7 733812 733813 OR11A1 - - 733812 736041chr16 734701 734702 WDR24 - - 734701 740400chr6_mann_hap4 735067 735068 OR2H1 + + 729196 735067chr6_mcf_hap5 735281 735282 OR2H1 + + 729411 735281chr6_qbl_hap6 735384 735385 OR2H1 + + 729513 735384chr6_dbb_hap3 735430 735431 OR2H1 + + 729560 735430chr6_apd_hap1 735577 735578 OR2H1 + + 729706 735577chr20 740723 740724 C20orf54 - - 740723 749228chr16 742499 742500 FBXL16 - - 742499 755825chr9 746103 746104 KANK1 + + 504702 746103chr9 746103 746104 KANK1 + + 706895 746103chr19 748330 748331 PALM + + 708952 748330chr19 748330 748331 PALM + + 708952 748330chr6_ssto_hap7 749286 749287 OR10C1 + + 748247 749286chr6_mann_hap4 757510 757511 MAS1L - - 757510 758647chr6_mcf_hap5 757724 757725 MAS1L - - 757724 758861chr6_qbl_hap6 757827 757828 MAS1L - - 757827 758964chr6_dbb_hap3 757873 757874 MAS1L - - 757873 759010chr6_apd_hap1 758020 758021 MAS1L - - 758020 759157chr17_ctg5_hap1 760700 760701 KIAA1267 + + 596065 760700chr17_ctg5_hap1 760700 760701 KIAA1267 + + 563497 760700chr17_ctg5_hap1 760700 760701 KIAA1267 + + 596171 760700chr1 761585 761586 NCRNA00115 - - 761585 762902chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr17_ctg5_hap1 762280 762281 MAPT - - 762280 895830chr19 764318 764319 C19orf21 + + 751145 764318chr4 764427 764428 PCGF3 + + 699572 764427chr11 765024 765025 TALDO1 + + 747431 765024chr11 767222 767223 PDDC1 - - 767222 777487chr16 767480 767481 METRN + + 765172 767480chr16 772581 772582 CCDC78 - - 772581 776473chr16 772590 772591 FAM173A + + 771157 772590chr6_ssto_hap7 772633 772634 OR2H1 + + 766763 772633chr4 773936 773937 LOC100129917 - - 773936 775636chr4 773936 773937 LOC100129917 - - 773936 775636chr4 778744 778745 CPLX1 - - 778744 819945chr16 779715 779716 HAGHL + + 777265 779715chr16 779768 779769 NARFL - - 779768 790997chr2 779836 779837 LOC339822 - - 779836 864112chr11 787109 787110 CEND1 - - 787109 790126chr1 789740 789741 LOC643837 + + 763063 789740

chr11 790474 790475 SLC25A22 - - 790474 798269chr11 790474 790475 SLC25A22 - - 790474 797995chr11 790474 790475 SLC25A22 - - 790474 796263chr17_ctg5_hap1 790688 790689 STH - - 790688 791133chr6_cox_hap2 794351 794352 OR14J1 + + 793385 794351chr6_ssto_hap7 795074 795075 MAS1L - - 795074 796211chr5 795719 795720 ZDHHC11 - - 795719 851101chr11 799178 799179 PIDD - - 799178 805250chr11 799178 799179 PIDD - - 799178 805250chr1 803450 803451 FAM41C - - 803450 812182chr6_mann_hap4 804319 804320 LOC100507362 + + 800156 804319chr6_mann_hap4 804319 804320 LOC100507362 + + 800156 804319chr6_mann_hap4 804319 804320 LOC100507362 + + 800156 804319chr6_mcf_hap5 804535 804536 LOC100507362 + + 800372 804535chr6_mcf_hap5 804535 804536 LOC100507362 + + 800372 804535chr6_mcf_hap5 804535 804536 LOC100507362 + + 800372 804535chr6_qbl_hap6 804635 804636 LOC100507362 + + 800472 804635chr6_qbl_hap6 804635 804636 LOC100507362 + + 800472 804635chr6_qbl_hap6 804635 804636 LOC100507362 + + 800472 804635chr6_dbb_hap3 804680 804681 LOC100507362 + + 800517 804680chr6_dbb_hap3 804680 804681 LOC100507362 + + 800517 804680chr6_dbb_hap3 804680 804681 LOC100507362 + + 800517 804680chr6_apd_hap1 804829 804830 LOC100507362 + + 800666 804829chr6_apd_hap1 804829 804830 LOC100507362 + + 800666 804829chr6_apd_hap1 804829 804830 LOC100507362 + + 800666 804829chr19 805023 805024 MIR4745 + + 804931 805023chr11 811814 811815 SNORA52 + + 811680 811814chr19 812327 812328 PTBP1 + + 797391 812327chr19 812327 812328 PTBP1 + + 797391 812327chr19 812327 812328 PTBP1 + + 797391 812327chr19 812327 812328 PTBP1 + + 797391 812327chr19 812517 812518 LPPR3 - - 812517 821952chr11 812876 812877 RPLP2 + + 809935 812876chr19 813653 813654 MIR3187 + + 813583 813653chr16 818865 818866 MSLN + + 810765 818865chr16 818865 818866 MSLN + + 811072 818865chr16 818865 818866 MSLN + + 810764 818865chr16 819427 819428 MSLNL - - 819427 832926chr16 820277 820278 MIR662 + + 820182 820277chr11 825571 825572 PNPLA2 + + 818900 825571chr7 826116 826117 HEATR2 + + 766337 826116chr6_mann_hap4 826390 826391 UBD - - 826390 830705chr6_mcf_hap5 826600 826601 UBD - - 826600 830914chr6_qbl_hap6 826706 826707 UBD - - 826706 831021chr6_dbb_hap3 826739 826740 UBD - - 826739 831053chr6_apd_hap1 826900 826901 UBD - - 826900 831215chr20 826922 826923 FAM110A + + 814355 826922chr20 826922 826923 FAM110A + + 816710 826922chr20 826922 826923 FAM110A + + 825284 826922chr11 831991 831992 EFCAB4A + + 827584 831991chr19 832017 832018 AZU1 + + 827830 832017chr16 834973 834974 RPUSD1 - - 834973 838383chr11 838835 838836 CD151 + + 832951 838835chr11 838835 838836 CD151 + + 832951 838835chr11 838835 838836 CD151 + + 832951 838835chr11 838835 838836 CD151 + + 832951 838835chr11 839720 839721 POLR2L - - 839720 842529chr6_ssto_hap7 841882 841883 LOC100507362 + + 837719 841882chr6_ssto_hap7 841882 841883 LOC100507362 + + 837719 841882chr6_ssto_hap7 841882 841883 LOC100507362 + + 837719 841882

chr6_cox_hap2 841925 841926 OR5V1 - - 841925 842973chr4 843064 843065 GAK - - 843064 926174chr16 848040 848041 GNG13 - - 848040 850733chr16 848074 848075 CHTF18 + + 838621 848074chr19 848175 848176 PRTN3 + + 840984 848175chr1 852952 852953 LOC100130417 - - 852952 854817chr6_mann_hap4 853132 853133 SNORD32B + + 853055 853132chr20 853296 853297 ANGPT4 - - 853296 896960chr6_mcf_hap5 853308 853309 SNORD32B + + 853231 853308chr6_qbl_hap6 853436 853437 SNORD32B + + 853359 853436chr6_dbb_hap3 853462 853463 SNORD32B + + 853385 853462chr6_apd_hap1 853616 853617 SNORD32B + + 853539 853616chr10 855483 855484 LARP4B - - 855483 931702chr19 856246 856247 ELANE + + 852290 856246chr6_mann_hap4 859772 859773 OR2H2 + + 858709 859772chr6_mcf_hap5 859948 859949 OR2H2 + + 858885 859948chr6_qbl_hap6 860076 860077 OR2H2 + + 859013 860076chr6_dbb_hap3 860102 860103 OR2H2 + + 859039 860102chr6_cox_hap2 860133 860134 OR12D3 - - 860133 862002chr6_apd_hap1 860255 860256 OR2H2 + + 859192 860255chr19 863610 863611 CFD + + 859664 863610chr5 863849 863850 BRD9 - - 863849 892939chr5 863849 863850 BRD9 - - 863849 892939chr5 863849 863850 BRD9 - - 863849 892674chr16 863861 863862 PRR25 + + 855442 863861chr11 867116 867117 TSPAN4 + + 842823 867116chr11 867116 867117 TSPAN4 + + 842823 867116chr11 867116 867117 TSPAN4 + + 842823 867116chr11 867116 867117 TSPAN4 + + 844445 867116chr11 867116 867117 TSPAN4 + + 842940 867116chr11 867116 867117 TSPAN4 + + 842940 867116chr11 867116 867117 TSPAN4 + + 844080 867116chr11 867858 867859 CHID1 - - 867858 910874chr11 867858 867859 CHID1 - - 867858 910874chr11 867858 867859 CHID1 - - 867858 910874chr11 867858 867859 CHID1 - - 867858 910874chr11 867858 867859 CHID1 - - 867858 915058chr19 867961 867962 MED16 - - 867961 893218chr6_mann_hap4 873028 873029 GABBR1 - - 873028 898992chr6_mann_hap4 873028 873029 GABBR1 - - 873028 903954chr6_mann_hap4 873028 873029 GABBR1 - - 873028 903954chr6_mcf_hap5 873207 873208 GABBR1 - - 873207 899207chr6_mcf_hap5 873207 873208 GABBR1 - - 873207 904163chr6_mcf_hap5 873207 873208 GABBR1 - - 873207 904163chr6_qbl_hap6 873335 873336 GABBR1 - - 873335 899337chr6_qbl_hap6 873335 873336 GABBR1 - - 873335 904294chr6_qbl_hap6 873335 873336 GABBR1 - - 873335 904294chr6_dbb_hap3 873361 873362 GABBR1 - - 873361 899363chr6_dbb_hap3 873361 873362 GABBR1 - - 873361 904320chr6_dbb_hap3 873361 873362 GABBR1 - - 873361 904320chr6_apd_hap1 873546 873547 GABBR1 - - 873546 904496chr6_apd_hap1 873546 873547 GABBR1 - - 873546 899540chr6_apd_hap1 873546 873547 GABBR1 - - 873546 904496chr1 879582 879583 NOC2L - - 879582 894679chr1 879961 879962 SAMD11 + + 861120 879961chr7 883509 883510 SUN1 + + 855193 883509chr7 883509 883510 SUN1 + + 856251 883509chr6_cox_hap2 884238 884239 OR12D2 + + 883205 884238chr17_ctg5_hap1 891433 891434 LOC100130148 - - 891433 894424chr19 896502 896503 C19orf22 - - 896502 913225

chr1 901099 901100 KLHL17 + + 895966 901099chr16 903634 903635 LMF1 - - 903634 1031318chr16 903634 903635 LMF1 - - 903634 1020984chr16 903634 903635 LMF1 - - 903634 1020984chr17 905390 905391 TIMM22 + + 900356 905390chr17 906758 906759 ABR - - 906758 1090616chr17 906758 906759 ABR - - 906758 1083131chr17 906758 906759 ABR - - 906758 1012324chr5 909047 909048 TRIP13 + + 892968 909047chr1 910484 910485 PLEKHN1 + + 901876 910484chr1 910484 910485 PLEKHN1 + + 901876 910484chr1 910578 910579 C1orf170 - - 910578 917473chr6_cox_hap2 912058 912059 OR11A1 - - 912058 914287chr18 912173 912174 ADCYAP1 + + 905296 912173chr18 912173 912174 ADCYAP1 + + 904943 912173chr7 914557 914558 SUN1 + + 856251 914557chr7 914557 914558 SUN1 + + 872141 914557chr7 914557 914558 SUN1 + + 856251 914557chr5 918164 918165 TRIP13 + + 892968 918164chr19 921015 921016 KISS1R + + 917341 921015chr17 925715 925716 MIR3183 - - 925715 925799chr6_cox_hap2 927532 927533 OR10C1 + + 926493 927532chr1 934341 934342 HES4 - - 934341 935552chr1 934343 934344 HES4 - - 934343 935552chr7 936071 936072 GET4 + + 916190 936071chr7 937536 937537 ADAP1 - - 937536 994289chr20 939095 939096 RSPO4 - - 939095 982907chr20 939095 939096 RSPO4 - - 939095 982907chr17_ctg5_hap1 943101 943102 IMP5 - - 943101 945284chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943106 943107 MOG + + 927717 943106chr6_mann_hap4 943125 943126 ZFP57 - - 943125 947889chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943331 943332 MOG + + 927946 943331chr6_mcf_hap5 943350 943351 ZFP57 - - 943350 948108chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943469 943470 MOG + + 928076 943469chr6_qbl_hap6 943488 943489 ZFP57 - - 943488 948253chr6_dbb_hap3 943503 943504 MOG + + 928110 943503

chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943503 943504 MOG + + 928110 943503chr6_dbb_hap3 943522 943523 ZFP57 - - 943522 948287chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943674 943675 MOG + + 928283 943674chr6_apd_hap1 943693 943694 ZFP57 - - 943693 944435chr17_ctg5_hap1 946818 946819 LOC100128977 + + 894693 946818chr1 949919 949920 ISG15 + + 948846 949919chr6_cox_hap2 950880 950881 OR2H1 + + 945011 950880chr4 952443 952444 TMEM175 + + 926261 952443chr4 952674 952675 DGKQ - - 952674 967344chr17_ctg5_hap1 954314 954315 CRHR1 - - 954314 1170453chr17_ctg5_hap1 954314 954315 CRHR1 - - 954314 1005883chr17_ctg5_hap1 954314 954315 CRHR1 - - 954314 1005883chr17_ctg5_hap1 954314 954315 CRHR1 - - 954314 1005883chr17_ctg5_hap1 954314 954315 CRHR1 - - 954314 1005883chr6 961240 961241 LOC285768 - - 961240 1101567chr6 961240 961241 LOC285768 - - 961240 1101567chr9 969090 969091 DMRT1 + + 841689 969090chr19 972803 972804 ARID3A + + 926036 972803chr4 972862 972863 SLC26A1 - - 972862 987183chr6_cox_hap2 973323 973324 MAS1L - - 973323 974460chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980702 980703 MOG + + 965313 980702chr6_ssto_hap7 980721 980722 ZFP57 - - 980721 985482chr4 981444 981445 SLC26A1 - - 981444 987183chr4 981444 981445 SLC26A1 - - 981444 987224chr5 988424 988425 LOC100506688 - - 988424 997455chr1 991492 991493 AGRN + + 955502 991492chr9 991732 991733 DMRT3 + + 976963 991732chr6_mcf_hap5 993878 993879 HLA-F + + 991650 993878chr19 994569 994570 WDR18 + + 984327 994569chr6_mann_hap4 994808 994809 HLA-F + + 991621 994808chr6_mann_hap4 994808 994809 HLA-F + + 991621 994808chr6_mann_hap4 994884 994885 HLA-F-AS1 - - 994884 1017334chr6_mann_hap4 994884 994885 HLA-F-AS1 - - 994884 1017334chr6_qbl_hap6 995162 995163 HLA-F + + 991975 995162chr6_qbl_hap6 995162 995163 HLA-F + + 991975 995162chr6_dbb_hap3 995185 995186 HLA-F + + 991998 995185chr6_dbb_hap3 995185 995186 HLA-F + + 991998 995185

chr6_qbl_hap6 995238 995239 HLA-F-AS1 - - 995238 1017689chr6_qbl_hap6 995238 995239 HLA-F-AS1 - - 995238 1017689chr6_dbb_hap3 995261 995262 HLA-F-AS1 - - 995261 1017704chr6_dbb_hap3 995261 995262 HLA-F-AS1 - - 995261 1017704chr6_mann_hap4 995580 995581 HLA-F + + 991621 995580chr6_qbl_hap6 995934 995935 HLA-F + + 991975 995934chr6_dbb_hap3 995957 995958 HLA-F + + 991998 995957chr4 998317 998318 IDUA + + 980784 998317chr7 1004485 1004486 COX19 - - 1004485 1015235chr1 1007125 1007126 RNF223 - - 1007125 1009687chr19 1009649 1009650 C19orf6 - - 1009649 1021141chr19 1009649 1009650 C19orf6 - - 1009649 1021141chr19 1009723 1009724 GRIN3B + + 1000436 1009723chr11 1012240 1012241 AP2A2 + + 925840 1012240chr11 1012823 1012824 MUC6 - - 1012823 1036706chr1 1017197 1017198 C1orf159 - - 1017197 1051736chr6_mann_hap4 1019088 1019089 IFITM4P - - 1019088 1019431chr6_mcf_hap5 1019117 1019118 IFITM4P - - 1019117 1019459chr6_qbl_hap6 1019443 1019444 IFITM4P - - 1019443 1019786chr6_dbb_hap3 1019458 1019459 IFITM4P - - 1019458 1019801chr6_cox_hap2 1020137 1020138 LOC100507362 + + 1015974 1020137chr6_cox_hap2 1020137 1020138 LOC100507362 + + 1015974 1020137chr6_cox_hap2 1020137 1020138 LOC100507362 + + 1015974 1020137chr12 1020618 1020619 WNK1 + + 862088 1020618chr12 1020618 1020619 WNK1 + + 862088 1020618chr12 1020618 1020619 WNK1 + + 862088 1020618chr12 1020618 1020619 WNK1 + + 862088 1020618chr4 1020686 1020687 FGFRL1 + + 1006251 1020686chr4 1020686 1020687 FGFRL1 + + 1005759 1020686chr4 1020686 1020687 FGFRL1 + + 1005609 1020686chr12 1021254 1021255 RAD52 - - 1021254 1058863chr16 1025760 1025761 LMF1 - - 1025760 1031318chr7 1029276 1029277 CYP2W1 + + 1022834 1029276chr6_ssto_hap7 1032057 1032058 HLA-F + + 1028896 1032057chr6_ssto_hap7 1032057 1032058 HLA-F + + 1028896 1032057chr6_ssto_hap7 1032127 1032128 HLA-F-AS1 - - 1032127 1054576chr6_ssto_hap7 1032127 1032128 HLA-F-AS1 - - 1032127 1054576chr6_ssto_hap7 1032823 1032824 HLA-F + + 1028896 1032823chr7 1036622 1036623 C7orf50 - - 1036622 1177893chr7 1036622 1036623 C7orf50 - - 1036622 1177893chr7 1036622 1036623 C7orf50 - - 1036622 1177893chr16 1036979 1036980 SOX8 + + 1031807 1036979chr5 1038925 1038926 NKD2 + + 1009167 1038925chr19 1039064 1039065 CNN2 + + 1026297 1039064chr19 1039064 1039065 CNN2 + + 1026297 1039064chr6_cox_hap2 1042198 1042199 UBD - - 1042198 1046512chr5 1050488 1050489 SLC12A7 - - 1050488 1112172chr6_ssto_hap7 1056330 1056331 IFITM4P - - 1056330 1056673chr9 1057554 1057555 DMRT2 + + 1050619 1057554chr9 1057554 1057555 DMRT2 + + 1050353 1057554chr9 1057554 1057555 DMRT2 + + 1050345 1057554chr6_mann_hap4 1059226 1059227 HCG4 - - 1059226 1061269chr6_mcf_hap5 1059266 1059267 HCG4 - - 1059266 1061309chr6_dbb_hap3 1059600 1059601 HCG4 - - 1059600 1061643chr6_qbl_hap6 1059611 1059612 HCG4 - - 1059611 1061631chr6_apd_hap1 1062457 1062458 HCG4 - - 1062457 1064477chr7 1062568 1062569 MIR339 - - 1062568 1062662chr5 1063010 1063011 MIR4635 - - 1063010 1063089chr10 1063708 1063709 GTPBP4 + + 1034348 1063708chr10 1064846 1064847 IDI2 - - 1064846 1071799

chr4 1065265 1065266 RNF212 - - 1065265 1107352chr4 1065265 1065266 RNF212 - - 1065265 1107352chr19 1065570 1065571 ABCA7 + + 1040101 1065570chr6_mcf_hap5 1065864 1065865 LOC554223 + + 1060141 1065864chr6_mann_hap4 1065926 1065927 LOC554223 + + 1060101 1065926chr6_qbl_hap6 1066156 1066157 LOC554223 + + 1060484 1066156chr6_dbb_hap3 1066207 1066208 LOC554223 + + 1060475 1066207chr6_cox_hap2 1068914 1068915 SNORD32B + + 1068837 1068914chr6_apd_hap1 1069002 1069003 LOC554223 + + 1063330 1069002chr6_cox_hap2 1075554 1075555 OR2H2 + + 1074491 1075554chr1 1079434 1079435 LOC254099 + + 1072396 1079434chr10 1085963 1085964 IDI1 - - 1085963 1095061chr19 1086577 1086578 POLR2E - - 1086577 1095391chr19 1086627 1086628 HMHA1 + + 1067173 1086627chr4 1087095 1087096 RNF212 - - 1087095 1107352chr6_cox_hap2 1088813 1088814 GABBR1 - - 1088813 1119772chr6_cox_hap2 1088813 1088814 GABBR1 - - 1088813 1114815chr6_cox_hap2 1088813 1088814 GABBR1 - - 1088813 1119772chr10 1090141 1090142 IDI2-AS1 + + 1068576 1090141chr10 1090141 1090142 IDI2-AS1 + + 1068576 1090141chr10 1090141 1090142 IDI2-AS1 + + 1068576 1090141chr10 1090141 1090142 IDI2-AS1 + + 1068576 1090141chr6_ssto_hap7 1096479 1096480 HCG4 - - 1096479 1098522chr7 1098897 1098898 GPR146 + + 1097140 1098897chr6_mcf_hap5 1099178 1099179 HLA-G + + 1095034 1099178chr6_mann_hap4 1099228 1099229 HLA-G + + 1095085 1099228chr6_qbl_hap6 1099498 1099499 HLA-G + + 1095340 1099498chr6_dbb_hap3 1099520 1099521 HLA-G + + 1095376 1099520chr6_apd_hap1 1100722 1100723 HLA-H + + 1097260 1100722chr1 1102578 1102579 MIR200B + + 1102483 1102578chr6_ssto_hap7 1103140 1103141 LOC554223 + + 1097354 1103140chr1 1103332 1103333 MIR200A + + 1103242 1103332chr11 1104417 1104418 MUC2 + + 1074874 1104417chr1 1104467 1104468 MIR429 + + 1104384 1104467chr19 1106787 1106788 GPX4 + + 1103935 1106787chr19 1106787 1106788 GPX4 + + 1104648 1106787chr19 1106787 1106788 GPX4 + + 1103935 1106787chr19 1107632 1107633 SBNO2 - - 1107632 1132273chr19 1107632 1107633 SBNO2 - - 1107632 1174282chr4 1108984 1108985 TMED11P - - 1108984 1116952chr6_apd_hap1 1112186 1112187 HCG2P7 + + 1108576 1112186chr16 1114081 1114082 LOC146336 - - 1114081 1128731chr1 1121243 1121244 TTLL10 + + 1115076 1121243chr16 1131454 1131455 SSTR5 + + 1122755 1131454chr16 1131454 1131455 SSTR5 + + 1128780 1131454chr1 1133313 1133314 TTLL10 + + 1109285 1133313chr7 1133451 1133452 GPER + + 1127722 1133451chr7 1133451 1133452 GPER + + 1126442 1133451chr7 1133451 1133452 GPER + + 1126442 1133451chr6_apd_hap1 1134223 1134224 HCG4B - - 1134223 1135287chr6_ssto_hap7 1136465 1136466 HLA-G + + 1132307 1136465chr16 1138225 1138226 C1QTNF8 - - 1138225 1146244chr1 1138887 1138888 TNFRSF18 - - 1138887 1142089chr1 1138887 1138888 TNFRSF18 - - 1138887 1142089chr1 1138887 1138888 TNFRSF18 - - 1138887 1142089chr17_ctg5_hap1 1143725 1143726 C17orf69 - - 1143725 1150972chr1 1146705 1146706 TNFRSF4 - - 1146705 1149548chr17_ctg5_hap1 1147641 1147642 C17orf69 - - 1147641 1150972chr20 1148426 1148427 PSMF1 + + 1099239 1148426chr20 1148426 1148427 PSMF1 + + 1093905 1148426

chr17_ctg5_hap1 1151951 1151952 MGC57346 - - 1151951 1170451chr17_ctg5_hap1 1151951 1151952 MGC57346 - - 1151951 1170182chr1 1152287 1152288 SDF4 - - 1152287 1167447chr1 1152287 1152288 SDF4 - - 1152287 1167447chr6_mann_hap4 1153133 1153134 HLA-H + + 1149677 1153133chr6_mcf_hap5 1153497 1153498 HLA-H + + 1150035 1153497chr6_qbl_hap6 1153536 1153537 HLA-H + + 1150075 1153536chr6_apd_hap1 1153548 1153549 HLA-A + + 1150132 1153548chr6_apd_hap1 1153548 1153549 HLA-A + + 1150132 1153548chr6_dbb_hap3 1153860 1153861 HLA-H + + 1150398 1153860chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158951 1158952 MOG + + 1143558 1158951chr6_cox_hap2 1158970 1158971 ZFP57 - - 1158970 1163760chr4 1160720 1160721 SPON2 - - 1160720 1202750chr4 1160720 1160721 SPON2 - - 1160720 1166999chr4 1160720 1160721 SPON2 - - 1160720 1166657chr20 1161214 1161215 C20orf46 - - 1161214 1165117chr6_mann_hap4 1164597 1164598 HCG2P7 + + 1160982 1164597chr6_mcf_hap5 1164971 1164972 HCG2P7 + + 1161362 1164971chr6_qbl_hap6 1164995 1164996 HCG2P7 + + 1161392 1164995chr6_dbb_hap3 1165334 1165335 HCG2P7 + + 1161725 1165334chr1 1170420 1170421 B3GALT6 + + 1167628 1170420chr17 1174565 1174566 BHLHA9 + + 1173857 1174565chr1 1177832 1177833 FAM132A - - 1177832 1182102chr10 1178237 1178238 WDR37 + + 1102775 1178237chr6_mann_hap4 1186622 1186623 HCG4B - - 1186622 1187678chr6_qbl_hap6 1187015 1187016 HCG4B - - 1187015 1188075chr6_dbb_hap3 1187370 1187371 HCG4B - - 1187370 1188434chr20 1188918 1188919 C20orf202 + + 1184097 1188918chr1 1189291 1189292 UBE2J2 - - 1189291 1209234chr1 1189291 1189292 UBE2J2 - - 1189291 1209234chr1 1189291 1189292 UBE2J2 - - 1189291 1209234chr1 1189291 1189292 UBE2J2 - - 1189291 1209234chr4 1189570 1189571 LOC100130872 - - 1189570 1202750chr6_ssto_hap7 1190195 1190196 HLA-H + + 1186739 1190195chr17_ctg5_hap1 1190693 1190694 LOC644172 + + 1188438 1190693chr7 1192542 1192543 ZFAND2A - - 1192542 1199855chr6_ssto_hap7 1201663 1201664 HCG2P7 + + 1198049 1201663chr17 1204281 1204282 TUSC5 + + 1182956 1204281chr4 1205227 1205228 CTBP1 - - 1205227 1242908chr4 1205227 1205228 CTBP1 - - 1205227 1242908chr6_mann_hap4 1206062 1206063 HLA-A + + 1202631 1206062chr6_mann_hap4 1206062 1206063 HLA-A + + 1202631 1206062chr6_qbl_hap6 1206454 1206455 HLA-A + + 1203024 1206454chr6_qbl_hap6 1206454 1206455 HLA-A + + 1203024 1206454chr6_dbb_hap3 1207037 1207038 HLA-A + + 1203607 1207037chr6_dbb_hap3 1207037 1207038 HLA-A + + 1203607 1207037chr6_apd_hap1 1208638 1208639 ZNRD1-AS1 - - 1208638 1269198chr6_cox_hap2 1210492 1210493 HLA-F + + 1207305 1210492chr6_cox_hap2 1210492 1210493 HLA-F + + 1207305 1210492chr6_cox_hap2 1210562 1210563 HLA-F-AS1 - - 1210562 1233001chr6_cox_hap2 1210562 1210563 HLA-F-AS1 - - 1210562 1233001chr10 1210612 1210613 NCRNA00200 + + 1205707 1210612

chr6_cox_hap2 1211258 1211259 HLA-F + + 1207305 1211258chr6_apd_hap1 1217581 1217582 HLA-J + + 1213595 1217581chr10 1223252 1223253 ADARB2 - - 1223252 1779670chr6_ssto_hap7 1223622 1223623 HCG4B - - 1223622 1224684chr5 1225230 1225231 SLC6A19 + + 1201709 1225230chr1 1227409 1227410 SCNN1D + + 1210637 1227409chr1 1227409 1227410 SCNN1D + + 1210637 1227409chr1 1227763 1227764 ACAP3 - - 1227763 1243269chr19 1228434 1228435 STK11 + + 1205797 1228434chr19 1229946 1229947 C19orf26 - - 1229946 1237990chr6_cox_hap2 1234755 1234756 IFITM4P - - 1234755 1235098chr20 1235145 1235146 RAD21L1 + + 1206763 1235145chr6_qbl_hap6 1238972 1238973 HCG9 + + 1235683 1238972chr6_dbb_hap3 1239512 1239513 HCG9 + + 1236225 1239512chr6_ssto_hap7 1243012 1243013 HLA-A + + 1239581 1243012chr6_ssto_hap7 1243012 1243013 HLA-A + + 1239581 1243012chr8 1244293 1244294 LOC286083 - - 1244293 1250827chr6_mann_hap4 1244756 1244757 HCG9 + + 1241472 1244756chr19 1244824 1244825 ATP5D + + 1241748 1244824chr19 1244824 1244825 ATP5D + + 1241748 1244824chr5 1246304 1246305 SLC6A18 + + 1225469 1246304chr4 1246795 1246796 C4orf42 + + 1243227 1246795chr1 1246964 1246965 CPSF3L - - 1246964 1260046chr1 1247057 1247058 PUSL1 + + 1243993 1247057chr17 1247833 1247834 YWHAE - - 1247833 1303556chr17 1247833 1247834 YWHAE - - 1247833 1303556chr5 1253286 1253287 TERT - - 1253286 1295162chr5 1253286 1253287 TERT - - 1253286 1295162chr19 1259142 1259143 MIDN + + 1248551 1259142chr6_qbl_hap6 1261701 1261702 ZNRD1-AS1 - - 1261701 1321962chr6_dbb_hap3 1262133 1262134 ZNRD1-AS1 - - 1262133 1322691chr1 1264276 1264277 GLTPD1 + + 1260142 1264276chrY 1264886 1264887 CRLF2 - - 1264886 1281527chrY 1264893 1264894 CRLF2 - - 1264893 1281530chr6_mann_hap4 1267360 1267361 ZNRD1-AS1 - - 1267360 1327558chr19 1267469 1267470 C19orf23 - - 1267469 1270259chr18 1268311 1268312 C18orf2 - - 1268311 1359630chr18 1268311 1268312 C18orf2 - - 1268311 1359630chr18 1268311 1268312 C18orf2 - - 1268311 1359630chr18 1268311 1268312 C18orf2 - - 1268311 1359630chr1 1269844 1269845 TAS1R3 + + 1266725 1269844chr6_qbl_hap6 1270636 1270637 HLA-J + + 1266663 1270636chr1 1270657 1270658 DVL1 - - 1270657 1284492chr6_dbb_hap3 1271076 1271077 HLA-J + + 1267090 1271076chr16 1271650 1271651 TPSG1 - - 1271650 1275254chr16 1271772 1271773 CACNA1H + + 1203240 1271772chr16 1271772 1271773 CACNA1H + + 1203240 1271772chr6_apd_hap1 1272917 1272918 ZNRD1 + + 1269272 1272917chr6_apd_hap1 1272917 1272918 ZNRD1 + + 1269272 1272917chr19 1273171 1273172 CIRBP + + 1269266 1273171chr19 1274809 1274810 CIRBP + + 1269266 1274809chr19 1274809 1274810 CIRBP + + 1269266 1274809chr6_cox_hap2 1274919 1274920 HCG4 - - 1274919 1276939chr6_ssto_hap7 1275499 1275500 HCG9 + + 1272215 1275499chr6_mann_hap4 1276307 1276308 HLA-J + + 1272321 1276307chr7 1276613 1276614 UNCX + + 1272653 1276613chr6_apd_hap1 1278273 1278274 RNF39 - - 1278273 1283857chr6_apd_hap1 1278273 1278274 RNF39 - - 1278273 1283859chr16 1278335 1278336 TPSB2 - - 1278335 1280185chr6_apd_hap1 1278339 1278340 PPP1R11 + + 1275162 1278339

chr19 1279243 1279244 C19orf24 + + 1275519 1279243chr6_cox_hap2 1281464 1281465 LOC554223 + + 1275792 1281464chr11 1283406 1283407 MUC5B + + 1244294 1283406chr1 1288070 1288071 MXRA8 - - 1288070 1293915chr20 1289971 1289972 SNPH + + 1246959 1289971chr20 1290554 1290555 FKBP1A-SDCBP2 - - 1290554 1373816chr20 1290554 1290555 SDCBP2 - - 1290554 1306513chr20 1290554 1290555 SDCBP2 - - 1290554 1294317chr20 1290554 1290555 SDCBP2 - - 1290554 1309879chr16 1292555 1292556 TPSAB1 + + 1290677 1292555chr6_mcf_hap5 1295564 1295565 HLA-A + + 1150097 1295564chr6_mcf_hap5 1295564 1295565 HLA-A + + 1150097 1295564chr11 1295597 1295598 TOLLIP - - 1295597 1330892chr6_ssto_hap7 1298114 1298115 ZNRD1-AS1 - - 1298114 1359404chr19 1299944 1299945 EFNA2 + + 1286167 1299944chr6_ssto_hap7 1307061 1307062 HLA-J + + 1303075 1307061chr16 1308494 1308495 TPSD1 + + 1306272 1308494chr1 1309109 1309110 AURKAIP1 - - 1309109 1310818chr1 1309109 1309110 AURKAIP1 - - 1309109 1310580chr1 1309110 1309111 AURKAIP1 - - 1309110 1310562chr5 1309424 1309425 MIR4457 - - 1309424 1309492chr6_cox_hap2 1314804 1314805 HLA-G + + 1310646 1314804chrX 1314886 1314887 CRLF2 - - 1314886 1331527chrX 1314893 1314894 CRLF2 - - 1314893 1331530chr6 1314993 1314994 FOXQ1 + + 1312674 1314993chr5 1317999 1318000 CLPTM1L - - 1317999 1345002chr6_apd_hap1 1318453 1318454 TRIM31 - - 1318453 1321096chr1 1321090 1321091 CCNL2 - - 1321090 1334718chr17 1325457 1325458 CRK - - 1325457 1359544chr17 1325457 1325458 CRK - - 1325457 1359544chr6_qbl_hap6 1325666 1325667 ZNRD1 + + 1322036 1325666chr6_qbl_hap6 1325666 1325667 ZNRD1 + + 1322036 1325666chr6_dbb_hap3 1326410 1326411 ZNRD1 + + 1322765 1326410chr6_dbb_hap3 1326410 1326411 ZNRD1 + + 1322765 1326410chr1 1327667 1327668 CCNL2 - - 1327667 1334718chr6_mcf_hap5 1328039 1328040 HCG9 + + 1324752 1328039chr6_qbl_hap6 1331021 1331022 RNF39 - - 1331021 1336602chr6_qbl_hap6 1331021 1331022 RNF39 - - 1331021 1336600chr6_qbl_hap6 1331087 1331088 PPP1R11 + + 1327910 1331087chr6_mann_hap4 1331278 1331279 ZNRD1 + + 1327632 1331278chr6_mann_hap4 1331278 1331279 ZNRD1 + + 1327632 1331278chr6_dbb_hap3 1331766 1331767 RNF39 - - 1331766 1337350chr6_dbb_hap3 1331766 1331767 RNF39 - - 1331766 1337352chr6_dbb_hap3 1331832 1331833 PPP1R11 + + 1328655 1331832chr11 1331937 1331938 LOC255512 + + 1330937 1331937chr4 1333925 1333926 MAEA + + 1283671 1333925chr4 1333925 1333926 MAEA + + 1283671 1333925chr6_mann_hap4 1336635 1336636 RNF39 - - 1336635 1342219chr6_mann_hap4 1336635 1336636 RNF39 - - 1336635 1342221chr6_mann_hap4 1336701 1336702 PPP1R11 + + 1333523 1336701chr1 1337275 1337276 MRPL20 - - 1337275 1342693chr1 1337426 1337427 LOC148413 + + 1334909 1337426chr20 1349620 1349621 FKBP1A - - 1349620 1373816chr20 1349620 1349621 FKBP1A - - 1349620 1373816chr6_mcf_hap5 1350651 1350652 ZNRD1-AS1 - - 1350651 1410862chr20 1352355 1352356 FKBP1A - - 1352355 1373816chr1 1353799 1353800 LOC441869 - - 1353799 1356650chr1 1353799 1353800 LOC441869 - - 1353799 1356650chr6_apd_hap1 1356747 1356748 TRIM40 + + 1344744 1356747chr6_mcf_hap5 1359214 1359215 HLA-F + + 991650 1359214

chr6_mcf_hap5 1359214 1359215 HLA-F + + 991650 1359214chr6_mcf_hap5 1359597 1359598 HLA-J + + 1355611 1359597chr6_apd_hap1 1359958 1359959 TRIM10 - - 1359958 1368945chr6_apd_hap1 1359958 1359959 TRIM10 - - 1359958 1368945chrY 1362885 1362886 MIR3690 + + 1362810 1362885chr6_ssto_hap7 1363126 1363127 ZNRD1 + + 1359478 1363126chr6_ssto_hap7 1363126 1363127 ZNRD1 + + 1359478 1363126chr1 1363167 1363168 TMEM88B + + 1361507 1363167chr6_qbl_hap6 1363639 1363640 TRIM31 - - 1363639 1373827chr6_dbb_hap3 1364398 1364399 TRIM31 - - 1364398 1374585chr17 1367479 1367480 MYO1C - - 1367479 1394972chr17 1367479 1367480 MYO1C - - 1367479 1389051chr17 1367479 1367480 MYO1C - - 1367479 1396001chr6_ssto_hap7 1368482 1368483 RNF39 - - 1368482 1374068chr6_ssto_hap7 1368482 1368483 RNF39 - - 1368482 1374066chr6_ssto_hap7 1368548 1368549 PPP1R11 + + 1365371 1368548chr6_mann_hap4 1369233 1369234 TRIM31 - - 1369233 1379420chr2 1371384 1371385 SNTG2 + + 946553 1371384chr6_cox_hap2 1372586 1372587 HLA-H + + 1369124 1372586chrY 1374711 1374712 CSF2RA + + 1337692 1374711chr16 1375390 1375391 UBE2I + + 1359637 1375390chr16 1375390 1375391 UBE2I + + 1359179 1375390chr16 1375390 1375391 UBE2I + + 1359360 1375390chr16 1375390 1375391 UBE2I + + 1359637 1375390chr1 1378262 1378263 VWA1 + + 1370902 1378262chr1 1378262 1378263 VWA1 + + 1370902 1378262chr19 1378430 1378431 MUM1 + + 1356322 1378430chr19 1378430 1378431 MUM1 + + 1354975 1378430chrY 1378828 1378829 CSF2RA + + 1337692 1378828chrY 1378828 1378829 CSF2RA + + 1337692 1378828chrY 1378828 1378829 CSF2RA + + 1351570 1378828chrY 1378828 1378829 CSF2RA + + 1337692 1378828chrY 1378828 1378829 CSF2RA + + 1337692 1378828chrY 1378828 1378829 CSF2RA + + 1337692 1378828chrY 1378828 1378829 CSF2RA + + 1351570 1378828chrY 1378828 1378829 CSF2RA + + 1337692 1378828chrY 1378828 1378829 CSF2RA + + 1337692 1378828chr6_apd_hap1 1380692 1380693 TRIM15 + + 1371201 1380692chr4 1381837 1381838 KIAA1530 + + 1341103 1381837chr6_cox_hap2 1384050 1384051 HCG2P7 + + 1380440 1384050chr4 1389782 1389783 CRIPAK + + 1385339 1389782chr6_apd_hap1 1392421 1392422 TRIM26 - - 1392421 1421347chr5 1392904 1392905 SLC6A3 - - 1392904 1445543chr19 1395588 1395589 NDUFS7 + + 1383882 1395588chr6 1395832 1395833 FOXF2 + + 1390068 1395832chr19 1397087 1397088 GAMT - - 1397087 1401552chr17 1397870 1397871 INPP5K - - 1397870 1420182chr17 1397870 1397871 INPP5K - - 1397870 1420182chr17 1397870 1397871 INPP5K - - 1397870 1420182chr19 1398605 1398606 GAMT - - 1398605 1401552chr16 1399240 1399241 C16orf42 - - 1399240 1401873chr16 1399442 1399443 BAIAP3 + + 1384504 1399442chr16 1399442 1399443 BAIAP3 + + 1383605 1399442chr16 1399442 1399443 BAIAP3 + + 1383605 1399442chr16 1399442 1399443 BAIAP3 + + 1383605 1399442chr16 1399442 1399443 BAIAP3 + + 1386197 1399442chr6_ssto_hap7 1401126 1401127 TRIM31 - - 1401126 1411311chr1 1405538 1405539 ATAD3C + + 1385068 1405538chr6_cox_hap2 1406087 1406088 HCG4B - - 1406087 1407151chr6_qbl_hap6 1409460 1409461 TRIM40 + + 1397456 1409460

chr6_dbb_hap3 1410237 1410238 TRIM40 + + 1398235 1410237chr6_qbl_hap6 1412671 1412672 TRIM10 - - 1412671 1421658chr6_qbl_hap6 1412671 1412672 TRIM10 - - 1412671 1421658chrX 1412885 1412886 MIR3690 + + 1412810 1412885chr16 1413205 1413206 UNKL - - 1413205 1464705chr16 1413205 1413206 UNKL - - 1413205 1429684chr16 1413205 1413206 UNKL - - 1413205 1429684chr16 1413352 1413353 GNPTG + + 1401899 1413352chr6_dbb_hap3 1413448 1413449 TRIM10 - - 1413448 1422435chr6_dbb_hap3 1413448 1413449 TRIM10 - - 1413448 1422435chr6_mcf_hap5 1414584 1414585 ZNRD1 + + 1410936 1414584chr6_mcf_hap5 1414584 1414585 ZNRD1 + + 1410936 1414584chr6_mcf_hap5 1419940 1419941 RNF39 - - 1419940 1425524chr6_mcf_hap5 1419940 1419941 RNF39 - - 1419940 1425526chr6_mcf_hap5 1420006 1420007 PPP1R11 + + 1416829 1420006chr17 1421282 1421283 PITPNA - - 1421282 1466110chr17 1421390 1421391 LOC100306951 + + 1420212 1421390chr20 1422806 1422807 NSFL1C - - 1422806 1448337chr20 1422806 1422807 NSFL1C - - 1422806 1448337chr20 1422806 1422807 NSFL1C - - 1422806 1448337chr20 1422806 1422807 NSFL1C - - 1422806 1448337chrX 1424711 1424712 CSF2RA + + 1387692 1424711chr6_cox_hap2 1425413 1425414 HLA-A + + 1421997 1425413chr6_cox_hap2 1425413 1425414 HLA-A + + 1421997 1425413chrX 1428828 1428829 CSF2RA + + 1387692 1428828chrX 1428828 1428829 CSF2RA + + 1387692 1428828chrX 1428828 1428829 CSF2RA + + 1387692 1428828chrX 1428828 1428829 CSF2RA + + 1387692 1428828chrX 1428828 1428829 CSF2RA + + 1387692 1428828chrX 1428828 1428829 CSF2RA + + 1401570 1428828chrX 1428828 1428829 CSF2RA + + 1387692 1428828chrX 1428828 1428829 CSF2RA + + 1401570 1428828chrX 1428828 1428829 CSF2RA + + 1387692 1428828chr1 1431582 1431583 ATAD3B + + 1407163 1431582chr6_qbl_hap6 1433420 1433421 TRIM15 + + 1423929 1433420chr6_dbb_hap3 1434182 1434183 TRIM15 + + 1424691 1434182chr19 1435682 1435683 DAZAP1 + + 1407583 1435682chr19 1435682 1435683 DAZAP1 + + 1407583 1435682chr19 1440492 1440493 RPS15 + + 1438362 1440492chr6_qbl_hap6 1445146 1445147 TRIM26 - - 1445146 1474074chr3 1445278 1445279 CNTN6 + + 1134628 1445278chr6_dbb_hap3 1445911 1445912 TRIM26 - - 1445911 1474837chr6_ssto_hap7 1446965 1446966 TRIM40 + + 1434969 1446965chr16 1448305 1448306 UNKL - - 1448305 1464705chr6_ssto_hap7 1450169 1450170 TRIM10 - - 1450169 1459159chr6_ssto_hap7 1450169 1450170 TRIM10 - - 1450169 1459159chr17_ctg5_hap1 1450905 1450906 ARL17A - - 1450905 1513884chrY 1451582 1451583 IL3RA + + 1405508 1451582chr6_mcf_hap5 1452556 1452557 TRIM31 - - 1452556 1462748chrY 1455044 1455045 SLC25A6 - - 1455044 1461039chr20 1455235 1455236 SIRPB2 - - 1455235 1472233chr20 1455235 1455236 SIRPB2 - - 1455235 1472233chr6_cox_hap2 1457881 1457882 HCG9 + + 1454594 1457881chr5 1461541 1461542 LPCAT1 - - 1461541 1524076chr6_mann_hap4 1465077 1465078 TRIM40 + + 1453074 1465077chr6_mann_hap4 1468288 1468289 TRIM10 - - 1468288 1477275chr6_mann_hap4 1468288 1468289 TRIM10 - - 1468288 1477275chr16 1469943 1469944 C16orf91 - - 1469943 1479345chr1 1470067 1470068 ATAD3A + + 1447909 1470067chr1 1470067 1470068 ATAD3A + + 1447522 1470067

chr1 1470067 1470068 ATAD3A + + 1447522 1470067chr1 1470157 1470158 C1orf70 - - 1470157 1475740chr6_ssto_hap7 1470925 1470926 TRIM15 + + 1461434 1470925chrY 1472031 1472032 ASMTL - - 1472031 1521870chrY 1472031 1472032 ASMTL - - 1472031 1522655chrY 1472031 1472032 ASMTL - - 1472031 1521870chr19 1473199 1473200 C19orf25 - - 1473199 1479228chr19 1473243 1473244 APC2 + + 1450147 1473243chr7 1473994 1473995 MICALL2 - - 1473994 1499109chr1 1477052 1477053 SSU72 - - 1477052 1510262chr17 1477695 1477696 SLC43A2 - - 1477695 1532130chr6_cox_hap2 1480504 1480505 ZNRD1-AS1 - - 1480504 1541067chr19 1481426 1481427 PCSK4 - - 1481426 1490407chrY 1482479 1482480 ASMTL-AS1 + + 1469423 1482479chr6_ssto_hap7 1482639 1482640 TRIM26 - - 1482639 1511565chr11 1483328 1483329 BRSK2 + + 1411128 1483328chrY 1484314 1484315 ASMTL-AS1 + + 1469423 1484314chr16 1484388 1484389 CCDC154 - - 1484388 1494490chr17_ctg5_hap1 1486976 1486977 ARL17A - - 1486976 1513884chr6_mann_hap4 1489018 1489019 TRIM15 + + 1479527 1489018chr6_cox_hap2 1489447 1489448 HLA-J + + 1485461 1489447chr17_ctg5_hap1 1489848 1489849 LRRC37A4 + + 1481376 1489848chr11 1490684 1490685 MOB2 - - 1490684 1785501chr11 1490684 1490685 MOB2 - - 1490684 1507948chr16 1494934 1494935 CLCN7 - - 1494934 1525085chr16 1494934 1494935 CLCN7 - - 1494934 1525085chr19 1497924 1497925 REEP6 + + 1491164 1497924chr6_mcf_hap5 1498402 1498403 TRIM40 + + 1486406 1498402chr6_mann_hap4 1500730 1500731 TRIM26 - - 1500730 1529649chrX 1501582 1501583 IL3RA + + 1455508 1501582chr6_mcf_hap5 1501606 1501607 TRIM10 - - 1501606 1510596chr6_mcf_hap5 1501606 1501607 TRIM10 - - 1501606 1510596chr19 1505016 1505017 ADAMTSL5 - - 1505016 1513188chrX 1505044 1505045 SLC25A6 - - 1505044 1511039chr7 1509912 1509913 INTS1 - - 1509912 1544018chr20 1514896 1514897 SIRPD - - 1514896 1538343chrX 1522031 1522032 ASMTL - - 1522031 1571870chrX 1522031 1522032 ASMTL - - 1522031 1571870chrX 1522031 1522032 ASMTL - - 1522031 1572655chr6_mcf_hap5 1522354 1522355 TRIM15 + + 1512863 1522354chr6_qbl_hap6 1527642 1527643 HLA-L + + 1520254 1527642chr6_dbb_hap3 1528405 1528406 HLA-L + + 1521015 1528405chrY 1531465 1531466 P2RY8 - - 1531465 1606037chrX 1532479 1532480 ASMTL-AS1 + + 1519423 1532479chr1 1533387 1533388 LOC643988 - - 1533387 1535476chr6_mcf_hap5 1534068 1534069 TRIM26 - - 1534068 1562952chrX 1534314 1534315 ASMTL-AS1 + + 1519423 1534314chr19 1535455 1535456 PLK5P + + 1524077 1535455chr16 1535939 1535940 PTX4 - - 1535939 1538468chr17 1537151 1537152 SCARF1 - - 1537151 1549041chr17 1537151 1537152 SCARF1 - - 1537151 1549041chr17 1537151 1537152 SCARF1 - - 1537151 1549041chr17 1537151 1537152 SCARF1 - - 1537151 1549041chr17 1537151 1537152 SCARF1 - - 1537151 1549041chr6_cox_hap2 1544786 1544787 ZNRD1 + + 1541141 1544786chr6_cox_hap2 1544786 1544787 ZNRD1 + + 1541141 1544786chr20 1545028 1545029 SIRPB1 - - 1545028 1600689chr20 1545028 1545029 SIRPB1 - - 1545028 1600689chr2 1546499 1546500 TPO + + 1417232 1546499chr2 1546499 1546500 TPO + + 1417232 1546499

chr2 1546499 1546500 TPO + + 1418179 1546499chr2 1546499 1546500 TPO + + 1418179 1546499chr2 1546499 1546500 TPO + + 1417232 1546499chr2 1546499 1546500 TPO + + 1417232 1546499chr6_qbl_hap6 1548085 1548086 HCG18 - - 1548085 1587821chr6_qbl_hap6 1548085 1548086 HCG18 - - 1548085 1587821chr6_dbb_hap3 1548842 1548843 HCG18 - - 1548842 1588575chr6_dbb_hap3 1548842 1548843 HCG18 - - 1548842 1588575chr17 1549444 1549445 RILP - - 1549444 1553392chr6_cox_hap2 1550142 1550143 RNF39 - - 1550142 1555726chr6_cox_hap2 1550142 1550143 RNF39 - - 1550142 1555728chr6_cox_hap2 1550208 1550209 PPP1R11 + + 1547031 1550208chr17 1553922 1553923 PRPF8 - - 1553922 1588176chr19 1554667 1554668 MEX3D - - 1554667 1568057chr19 1554667 1554668 MEX3D - - 1554667 1568057chr16 1560427 1560428 IFT140 - - 1560427 1662109chr16 1560460 1560461 TELO2 + + 1543351 1560460chr6_ssto_hap7 1564729 1564730 HLA-L + + 1557339 1564729chr1 1565990 1565991 MIB2 + + 1550794 1565990chr1 1565990 1565991 MIB2 + + 1550794 1565990chr1 1565990 1565991 MIB2 + + 1551244 1565990chr1 1565990 1565991 MIB2 + + 1550794 1565990chr1 1565990 1565991 MIB2 + + 1550794 1565990chr1 1565990 1565991 MIB2 + + 1550794 1565990chr6_apd_hap1 1566816 1566817 HCG18 - - 1566816 1606556chr6_apd_hap1 1566816 1566817 HCG18 - - 1566816 1606556chr1 1570027 1570028 MMP23A + + 1568158 1570027chr1 1570030 1570031 MMP23B + + 1567559 1570030chr1 1571099 1571100 CDK11B - - 1571099 1655775chr1 1571099 1571100 CDK11B - - 1571099 1655775chr1 1571099 1571100 CDK11B - - 1571099 1655775chr1 1571099 1571100 CDK11B - - 1571099 1655775chr1 1571099 1571100 CDK11B - - 1571099 1655775chr1 1571099 1571100 CDK11B - - 1571099 1655775chr5 1572072 1572073 SDHAP3 - - 1572072 1594646chr17_ctg5_hap1 1574839 1574840 NSFP1 + + 1524912 1574839chr11 1575280 1575281 DUSP8 - - 1575280 1593150chr19 1576677 1576678 MBD3 - - 1576677 1592652chr20 1577985 1577986 SIRPB1 - - 1577985 1600689chrX 1581465 1581466 P2RY8 - - 1581465 1656037chr7 1581870 1581871 TMEM184A - - 1581870 1596066chr7 1582679 1582680 MAFK + + 1570367 1582679chr6_cox_hap2 1582795 1582796 TRIM31 - - 1582795 1592995chr6_mann_hap4 1582804 1582805 HLA-L + + 1575418 1582804chr6_ssto_hap7 1585164 1585165 HCG18 - - 1585164 1624902chr6_ssto_hap7 1585164 1585165 HCG18 - - 1585164 1624902chr1 1592938 1592939 SLC35E2B - - 1592938 1624243chr19 1597153 1597154 UQCR11 - - 1597153 1605483chr5 1597671 1597672 LOC728613 - - 1597671 1634120chr10 1599179 1599180 NCRNA00168 + + 1568824 1599179chr6_mann_hap4 1603264 1603265 HCG18 - - 1603264 1642995chr6_mann_hap4 1603264 1603265 HCG18 - - 1603264 1642995chr6_qbl_hap6 1604407 1604408 TRIM39 + + 1587514 1604407chr6_qbl_hap6 1604407 1604408 TRIM39 + + 1587901 1604407chr12 1605099 1605100 ERC1 + + 1100403 1605099chr12 1605099 1605100 ERC1 + + 1100403 1605099chr12 1605099 1605100 ERC1 + + 1100403 1605099chr12 1605099 1605100 ERC1 + + 1100403 1605099chr12 1605099 1605100 ERC1 + + 1100403 1605099chr6_dbb_hap3 1605160 1605161 TRIM39 + + 1588268 1605160

chr6_dbb_hap3 1605160 1605161 TRIM39 + + 1588655 1605160chr16 1605243 1605244 TMEM204 + + 1584230 1605243chr11 1605571 1605572 KRTAP5-1 - - 1605571 1606513chr17 1606083 1606084 TLCD2 - - 1606083 1613662chr7 1606969 1606970 PSMG3 - - 1606969 1609668chr7 1606969 1606970 PSMG3 - - 1606969 1609629chr6_qbl_hap6 1607536 1607537 RPP21 + + 1605806 1607536chr6_qbl_hap6 1607536 1607537 RPP21 + + 1605806 1607536chr6_qbl_hap6 1607536 1607537 RPP21 + + 1605806 1607536chr6_qbl_hap6 1607536 1607537 TRIM39-RPP21 + + 1589982 1607536chr6_dbb_hap3 1608289 1608290 RPP21 + + 1606559 1608289chr6_dbb_hap3 1608289 1608290 RPP21 + + 1606559 1608289chr6_dbb_hap3 1608289 1608290 RPP21 + + 1606559 1608289chr6_dbb_hap3 1608289 1608290 TRIM39-RPP21 + + 1590736 1608289chr19 1609291 1609292 TCF3 - - 1609291 1650286chr19 1609291 1609292 TCF3 - - 1609291 1652326chr20 1609797 1609798 SIRPG - - 1609797 1638425chr20 1609797 1609798 SIRPG - - 1609797 1638425chr20 1609797 1609798 SIRPG - - 1609797 1638425chr12 1613590 1613591 LOC100292680 + + 1609656 1613590chr6 1614129 1614130 FOXC1 + + 1610680 1614129chr17 1614797 1614798 C17orf91 - - 1614797 1619566chr17 1614797 1614798 C17orf91 - - 1614797 1619566chr17 1614797 1614798 C17orf91 - - 1614797 1619566chr17 1614797 1614798 C17orf91 - - 1614797 1619566chr17 1617196 1617197 MIR22 - - 1617196 1617281chr11 1618406 1618407 KRTAP5-2 - - 1618406 1619524chr11 1620414 1620415 LOC338651 + + 1593970 1620414chr6_apd_hap1 1623141 1623142 TRIM39 + + 1606249 1623141chr6_apd_hap1 1623141 1623142 TRIM39 + + 1606636 1623141chr6 1624040 1624041 GMDS - - 1624040 2245846chr6_apd_hap1 1626270 1626271 RPP21 + + 1624540 1626270chr6_apd_hap1 1626270 1626271 RPP21 + + 1624540 1626270chr6_apd_hap1 1626270 1626271 RPP21 + + 1624540 1626270chr6_apd_hap1 1626270 1626271 TRIM39-RPP21 + + 1608717 1626270chr6_cox_hap2 1628649 1628650 TRIM40 + + 1616643 1628649chr11 1628794 1628795 KRTAP5-3 - - 1628794 1629693chr7 1629261 1629262 KIAA1908 + + 1609708 1629261chr7 1629261 1629262 KIAA1908 + + 1609708 1629261chr7 1629261 1629262 KIAA1908 + + 1609708 1629261chr6_cox_hap2 1631860 1631861 TRIM10 - - 1631860 1640846chr6_cox_hap2 1631860 1631861 TRIM10 - - 1631860 1640846chr1 1633247 1633248 MMP23A + + 1631377 1633247chr1 1634169 1634170 CDK11A - - 1634169 1655791chr1 1634169 1634170 CDK11A - - 1634169 1655791chr2 1635658 1635659 PXDN - - 1635658 1748291chr6_ssto_hap7 1641484 1641485 TRIM39 + + 1624595 1641484chr6_ssto_hap7 1641484 1641485 TRIM39 + + 1624982 1641484chr4 1641607 1641608 FAM53A - - 1641607 1685988chr4 1641607 1641608 FAM53A - - 1641607 1685718chr17 1641893 1641894 WDR81 + + 1619816 1641893chr17 1641893 1641894 WDR81 + + 1619816 1641893chr17 1641893 1641894 WDR81 + + 1628124 1641893chr17 1641893 1641894 WDR81 + + 1627833 1641893chr11 1642187 1642188 KRTAP5-4 - - 1642187 1643368chr6_ssto_hap7 1644613 1644614 RPP21 + + 1642883 1644613chr6_ssto_hap7 1644613 1644614 RPP21 + + 1642883 1644613chr6_ssto_hap7 1644613 1644614 RPP21 + + 1642883 1644613chr6_ssto_hap7 1644613 1644614 TRIM39-RPP21 + + 1627063 1644613chr11 1652159 1652160 KRTAP5-5 + + 1651032 1652159

chr6_cox_hap2 1652600 1652601 TRIM15 + + 1643109 1652600chr1 1656276 1656277 SLC35E2 - - 1656276 1677438chr7 1656328 1656329 TFAMP1 + + 1654105 1656328chr8 1656642 1656643 DLGAP2 + + 1449568 1656642chr17 1658559 1658560 SERPINF2 + + 1646319 1658559chr17 1658559 1658560 SERPINF2 + + 1646129 1658559chr17 1658559 1658560 SERPINF2 + + 1646129 1658559chr1 1658823 1658824 SLC35E2 - - 1658823 1677438chr6_mann_hap4 1659580 1659581 TRIM39 + + 1642688 1659580chr6_mann_hap4 1659580 1659581 TRIM39 + + 1643075 1659580chr6_mann_hap4 1662712 1662713 RPP21 + + 1660980 1662712chr6_mann_hap4 1662712 1662713 RPP21 + + 1660980 1662712chr6_mann_hap4 1662712 1662713 RPP21 + + 1660980 1662712chr6_mann_hap4 1662712 1662713 TRIM39-RPP21 + + 1645156 1662712chr6_cox_hap2 1664340 1664341 TRIM26 - - 1664340 1693253chrY 1671407 1671408 AKAP17A + + 1660485 1671407chrY 1671411 1671412 AKAP17A + + 1660485 1671411chr12 1675158 1675159 FBXL14 - - 1675158 1703331chr17 1680859 1680860 SERPINF1 + + 1665258 1680859chr1 1682670 1682671 NADK - - 1682670 1709909chr1 1682670 1682671 NADK - - 1682670 1711508chr1 1682670 1682671 NADK - - 1682670 1710297chr1 1682670 1682671 NADK - - 1682670 1690081chr17 1682828 1682829 SMYD4 - - 1682828 1733175chr11 1689086 1689087 FAM99A + + 1686828 1689086chr4 1694526 1694527 SLBP - - 1694526 1714030chr11 1704499 1704500 FAM99B - - 1704499 1706859chr5 1708899 1708900 MIR4277 - - 1708899 1708983chrY 1711974 1711975 ASMT + + 1683940 1711974chrY 1711974 1711975 ASMT + + 1664347 1711974chrY 1711974 1711975 ASMT + + 1684025 1711974chr1 1716724 1716725 GNB1 - - 1716724 1822526chr4 1717678 1717679 TMEM129 - - 1717678 1723084chr4 1717678 1717679 TMEM129 - - 1717678 1723084chr11 1718985 1718986 KRTAP5-6 + + 1718424 1718985chrX 1721407 1721408 AKAP17A + + 1710485 1721407chrX 1721411 1721412 AKAP17A + + 1710485 1721411chr16 1727909 1727910 CRAMP1L + + 1664640 1727909chr8 1734736 1734737 CLN8 + + 1711869 1734736chr6_cox_hap2 1746752 1746753 HLA-L + + 1739434 1746752chr4 1746897 1746898 TACC3 + + 1723265 1746897chr16 1752073 1752074 HN1L + + 1728277 1752073chr11 1753639 1753640 IFITM10 - - 1753639 1771824chr20 1754010 1754011 LOC100289473 - - 1754010 1760392chr6_qbl_hap6 1754897 1754898 HLA-E + + 1750097 1754897chr6_dbb_hap3 1755622 1755623 HLA-E + + 1750822 1755622chr12 1756377 1756378 WNT5B + + 1726221 1756377chr12 1756378 1756379 WNT5B + + 1738411 1756378chrX 1761974 1761975 ASMT + + 1734025 1761974chrX 1761974 1761975 ASMT + + 1714347 1761974chrX 1761974 1761975 ASMT + + 1733940 1761974chr8 1765473 1765474 MIR596 + + 1765396 1765473chr6_cox_hap2 1767196 1767197 HCG18 - - 1767196 1806933chr6_cox_hap2 1767196 1767197 HCG18 - - 1767196 1806933chr12 1769480 1769481 MIR3649 - - 1769480 1769546chr11 1773981 1773982 CTSD - - 1773981 1785222chr19 1775444 1775445 ONECUT3 + + 1753661 1775444chr19 1782073 1782074 ATP8B3 - - 1782073 1812199chr19 1782073 1782074 ATP8B3 - - 1782073 1812270chr16 1785067 1785068 MIR3177 + + 1784985 1785067

chr7 1787590 1787591 ELFN1 + + 1748797 1787590chr2 1792884 1792885 MYT1L - - 1792884 2335045chr6_ssto_hap7 1794272 1794273 HLA-E + + 1789472 1794272chr5 1798498 1798499 MRPL36 - - 1798498 1799956chr6_qbl_hap6 1802057 1802058 GNL1 - - 1802057 1818275chr6_dbb_hap3 1802785 1802786 GNL1 - - 1802785 1819003chr17 1802848 1802849 RPA1 + + 1733272 1802848chr6_mann_hap4 1810060 1810061 HLA-E + + 1805260 1810060chr4 1810599 1810600 FGFR3 + + 1795038 1810599chr4 1810599 1810600 FGFR3 + + 1795038 1810599chr4 1810599 1810600 FGFR3 + + 1795038 1810599chr4 1813205 1813206 LETM1 - - 1813205 1857974chr19 1815244 1815245 REXO1 - - 1815244 1848452chr19 1816157 1816158 MIR1909 - - 1816157 1816237chr5 1816167 1816168 NDUFS6 + + 1801495 1816167chr16 1820318 1820319 MAPK8IP3 + + 1756220 1820318chr16 1820318 1820319 MAPK8IP3 + + 1756220 1820318chr16 1820320 1820321 NME3 - - 1820320 1821710chr6_apd_hap1 1820797 1820798 GNL1 - - 1820797 1832978chr16 1821895 1821896 MRPS34 - - 1821895 1823140chr6_cox_hap2 1823516 1823517 TRIM39 + + 1806626 1823516chr6_cox_hap2 1823516 1823517 TRIM39 + + 1807013 1823516chr19 1824542 1824543 LOC100288123 + + 1822087 1824542chr6_qbl_hap6 1825377 1825378 PRR3 + + 1817389 1825377chr6_qbl_hap6 1825377 1825378 PRR3 + + 1817389 1825377chr6_dbb_hap3 1826105 1826106 PRR3 + + 1818117 1826105chr6_dbb_hap3 1826105 1826106 PRR3 + + 1818117 1826105chr16 1826239 1826240 EME2 + + 1823228 1826239chr6_cox_hap2 1826645 1826646 RPP21 + + 1824915 1826645chr6_cox_hap2 1826645 1826646 RPP21 + + 1824915 1826645chr6_cox_hap2 1826645 1826646 RPP21 + + 1824915 1826645chr6_cox_hap2 1826645 1826646 TRIM39-RPP21 + + 1809094 1826645chr16 1826712 1826713 SPSB3 - - 1826712 1832581chr17 1837970 1837971 RTN4RL1 - - 1837970 1928178chr16 1839192 1839193 NUBP2 + + 1832932 1839192chr16 1840413 1840414 IGFALS - - 1840413 1843734chr16 1840413 1840414 IGFALS - - 1840413 1843734chr16 1840413 1840414 IGFALS - - 1840413 1844909chr6_ssto_hap7 1841431 1841432 GNL1 - - 1841431 1857647chr6_mcf_hap5 1843846 1843847 HLA-E + + 1839046 1843846chr6_qbl_hap6 1845102 1845103 MIR877 + + 1845016 1845102chr6_dbb_hap3 1845835 1845836 MIR877 + + 1845749 1845835chr1 1848733 1848734 CALML6 + + 1846265 1848733chr1 1849028 1849029 TMEM52 - - 1849028 1850740chr6_qbl_hap6 1852211 1852212 ABCF1 + + 1832075 1852211chr6_qbl_hap6 1852211 1852212 ABCF1 + + 1832075 1852211chr19 1852397 1852398 KLF16 - - 1852397 1863564chr6_dbb_hap3 1852944 1852945 ABCF1 + + 1832804 1852944chr6_dbb_hap3 1852944 1852945 ABCF1 + + 1832804 1852944chr7 1855427 1855428 MAD1L1 - - 1855427 2272583chr7 1855427 1855428 MAD1L1 - - 1855427 2272583chr7 1855427 1855428 MAD1L1 - - 1855427 2272583chr6_mann_hap4 1857226 1857227 GNL1 - - 1857226 1873443chr11 1858750 1858751 SYT8 + + 1855673 1858750chr16 1859103 1859104 HAGH - - 1859103 1877195chr16 1859103 1859104 HAGH - - 1859103 1877195chr6_qbl_hap6 1861089 1861090 PPP1R10 - - 1861089 1877927chr6_dbb_hap3 1861819 1861820 PPP1R10 - - 1861819 1878658chr11 1862910 1862911 TNNI2 + + 1861431 1862910chr11 1862910 1862911 TNNI2 + + 1860718 1862910

chr11 1862910 1862911 TNNI2 + + 1860232 1862910chr6_ssto_hap7 1864749 1864750 PRR3 + + 1856761 1864749chr6_ssto_hap7 1864749 1864750 PRR3 + + 1856761 1864749chr19 1876974 1876975 FAM108A1 - - 1876974 1885518chr19 1876974 1876975 FAM108A1 - - 1876974 1885518chr5 1877540 1877541 IRX4 - - 1877540 1882880chr16 1878908 1878909 FAHD1 + + 1877224 1878908chr6_mann_hap4 1880545 1880546 PRR3 + + 1872557 1880545chr6_mann_hap4 1880545 1880546 PRR3 + + 1872557 1880545chr11 1880693 1880694 MIR4298 - - 1880693 1880766chr7 1883815 1883816 MIR4655 - - 1883815 1883889chr16 1883983 1883984 C16orf73 - - 1883983 1922179chr16 1883988 1883989 C16orf73 - - 1883988 1922102chr6_ssto_hap7 1884476 1884477 MIR877 + + 1884390 1884476chr1 1884751 1884752 KIAA1751 - - 1884751 1935276chr6_qbl_hap6 1887081 1887082 MRPS18B + + 1878392 1887081chr6_dbb_hap3 1887812 1887813 MRPS18B + + 1879123 1887812chr16 1890203 1890204 FAHD1 + + 1877224 1890203chr16 1890203 1890204 FAHD1 + + 1877224 1890203chr6_mcf_hap5 1891008 1891009 GNL1 - - 1891008 1907225chr6_ssto_hap7 1891586 1891587 ABCF1 + + 1871447 1891586chr6_ssto_hap7 1891586 1891587 ABCF1 + + 1871447 1891586chr12 1897845 1897846 ADIPOR2 + + 1800246 1897845chr6_mann_hap4 1900266 1900267 MIR877 + + 1900180 1900266chr6_ssto_hap7 1900460 1900461 PPP1R10 - - 1900460 1917299chr12 1901122 1901123 CACNA2D4 - - 1901122 2027870chr6_qbl_hap6 1905355 1905356 ATAT1 + + 1887519 1905355chr6_qbl_hap6 1905355 1905356 ATAT1 + + 1887519 1905355chr6_qbl_hap6 1905355 1905356 ATAT1 + + 1887519 1905355chr6_qbl_hap6 1905355 1905356 ATAT1 + + 1887569 1905355chr6_dbb_hap3 1906085 1906086 ATAT1 + + 1888250 1906085chr6_dbb_hap3 1906085 1906086 ATAT1 + + 1888250 1906085chr6_dbb_hap3 1906085 1906086 ATAT1 + + 1888250 1906085chr6_dbb_hap3 1906085 1906086 ATAT1 + + 1888300 1906085chr8 1906807 1906808 ARHGEF10 + + 1772148 1906807chr6_mann_hap4 1907381 1907382 ABCF1 + + 1887241 1907381chr6_mann_hap4 1907381 1907382 ABCF1 + + 1887241 1907381chr6_qbl_hap6 1907505 1907506 ATAT1 + + 1887519 1907505chr6_qbl_hap6 1907505 1907506 ATAT1 + + 1887569 1907505chr6_dbb_hap3 1908235 1908236 ATAT1 + + 1888250 1908235chr6_dbb_hap3 1908235 1908236 ATAT1 + + 1888300 1908235chr19 1913446 1913447 ADAT3 + + 1905416 1913446chr11 1913493 1913494 LSP1 + + 1874199 1913493chr11 1913493 1913494 LSP1 + + 1892153 1913493chr11 1913493 1913494 LSP1 + + 1892098 1913493chr11 1913493 1913494 LSP1 + + 1889902 1913493chr6_qbl_hap6 1913796 1913797 DHX16 - - 1913796 1933762chr6_qbl_hap6 1913796 1913797 DHX16 - - 1913796 1933762chr6_qbl_hap6 1913888 1913889 C6orf136 + + 1907722 1913888chr6_qbl_hap6 1913888 1913889 C6orf136 + + 1907722 1913888chr6_qbl_hap6 1913888 1913889 C6orf136 + + 1907722 1913888chr6_mcf_hap5 1914327 1914328 PRR3 + + 1906339 1914327chr6_mcf_hap5 1914327 1914328 PRR3 + + 1906339 1914327chr6_dbb_hap3 1914526 1914527 DHX16 - - 1914526 1934492chr6_dbb_hap3 1914526 1914527 DHX16 - - 1914526 1934492chr6_dbb_hap3 1914618 1914619 C6orf136 + + 1908452 1914618chr6_dbb_hap3 1914618 1914619 C6orf136 + + 1908452 1914618chr6_dbb_hap3 1914618 1914619 C6orf136 + + 1908452 1914618chr6_mann_hap4 1916253 1916254 PPP1R10 - - 1916253 1933092chr20 1920540 1920541 SIRPA + + 1874812 1920540

chr20 1920540 1920541 SIRPA + + 1875424 1920540chr20 1920540 1920541 SIRPA + + 1875825 1920540chr19 1926012 1926013 SCAMP4 + + 1905372 1926012chr6_ssto_hap7 1926453 1926454 MRPS18B + + 1917764 1926453chr16 1928285 1928286 NCRNA00254 - - 1928285 1934232chr6_mcf_hap5 1934048 1934049 MIR877 + + 1933962 1934048chr6_qbl_hap6 1937098 1937099 KIAA1949 - - 1937098 1948605chr6_qbl_hap6 1937098 1937099 KIAA1949 - - 1937098 1948026chr6_dbb_hap3 1937827 1937828 KIAA1949 - - 1937827 1949334chr6_dbb_hap3 1937827 1937828 KIAA1949 - - 1937827 1948755chr6_apd_hap1 1938891 1938892 DHX16 - - 1938891 1952475chr6_apd_hap1 1938891 1938892 DHX16 - - 1938891 1952475chr6_mcf_hap5 1941163 1941164 ABCF1 + + 1921023 1941163chr6_mcf_hap5 1941163 1941164 ABCF1 + + 1921023 1941163chr6_mann_hap4 1942246 1942247 MRPS18B + + 1933557 1942246chr4 1944302 1944303 WHSC1 + + 1894508 1944302chr6_ssto_hap7 1944728 1944729 ATAT1 + + 1926891 1944728chr6_ssto_hap7 1944728 1944729 ATAT1 + + 1926891 1944728chr6_ssto_hap7 1944728 1944729 ATAT1 + + 1926891 1944728chr6_ssto_hap7 1944728 1944729 ATAT1 + + 1926941 1944728chr12 1945918 1945919 LRTM2 + + 1929432 1945918chr12 1945918 1945919 LRTM2 + + 1929432 1945918chr12 1945918 1945919 LRTM2 + + 1929432 1945918chr17 1946725 1946726 DPH1 + + 1933430 1946725chr17 1946725 1946726 OVCA2 + + 1945276 1946725chr6_ssto_hap7 1946878 1946879 ATAT1 + + 1926891 1946878chr6_ssto_hap7 1946878 1946879 ATAT1 + + 1926941 1946878chr6_qbl_hap6 1948758 1948759 NRM - - 1948758 1951702chr6_dbb_hap3 1949487 1949488 NRM - - 1949487 1952431chr6_mcf_hap5 1950036 1950037 PPP1R10 - - 1950036 1966876chr4 1950545 1950546 WHSC1 + + 1902352 1950545chr19 1952525 1952526 C19orf34 - - 1952525 1954548chr6_ssto_hap7 1953167 1953168 DHX16 - - 1953167 1973134chr6_ssto_hap7 1953167 1953168 DHX16 - - 1953167 1973134chr17 1953201 1953202 MIR132 - - 1953201 1953302chr6_ssto_hap7 1953259 1953260 C6orf136 + + 1947095 1953259chr6_ssto_hap7 1953259 1953260 C6orf136 + + 1947095 1953259chr6_ssto_hap7 1953259 1953260 C6orf136 + + 1947095 1953259chr17 1953564 1953565 MIR212 - - 1953564 1953674chr8 1955109 1955110 KBTBD11 + + 1922043 1955109chr6_apd_hap1 1955811 1955812 KIAA1949 - - 1955811 1967318chr6_apd_hap1 1955811 1955812 KIAA1949 - - 1955811 1966739chr20 1959401 1959402 PDYN - - 1959401 1974931chr20 1959401 1959402 PDYN - - 1959401 1974931chr20 1959401 1959402 PDYN - - 1959401 1974931chr20 1959401 1959402 PDYN - - 1959401 1973452chr20 1959401 1959402 PDYN - - 1959401 1974394chr11 1959936 1959937 TNNT3 + + 1940798 1959936chr11 1959936 1959937 TNNT3 + + 1940798 1959936chr11 1959936 1959937 TNNT3 + + 1940798 1959936chr11 1959936 1959937 TNNT3 + + 1940798 1959936chr6_qbl_hap6 1960515 1960516 MDC1 - - 1960515 1978389chr6_mann_hap4 1960520 1960521 ATAT1 + + 1942684 1960520chr6_mann_hap4 1960520 1960521 ATAT1 + + 1942684 1960520chr6_mann_hap4 1960520 1960521 ATAT1 + + 1942684 1960520chr6_mann_hap4 1960520 1960521 ATAT1 + + 1942734 1960520chr6_dbb_hap3 1961243 1961244 MDC1 - - 1961243 1979117chr16 1961464 1961465 HS3ST6 - - 1961464 1968231chr1 1962192 1962193 GABRD + + 1950767 1962192chr6_mann_hap4 1962670 1962671 ATAT1 + + 1942684 1962670

chr6_mann_hap4 1962670 1962671 ATAT1 + + 1942734 1962670chr17 1962981 1962982 HIC1 + + 1959603 1962981chr17 1962981 1962982 HIC1 + + 1958392 1962981chr17 1963132 1963133 SMG6 - - 1963132 2207069chr17 1963132 1963133 SMG6 - - 1963132 2206813chr6_apd_hap1 1967471 1967472 NRM - - 1967471 1970415chr6_mann_hap4 1968962 1968963 DHX16 - - 1968962 1988926chr6_mann_hap4 1968962 1968963 DHX16 - - 1968962 1988926chr6_mann_hap4 1969054 1969055 C6orf136 + + 1962887 1969054chr6_mann_hap4 1969054 1969055 C6orf136 + + 1962887 1969054chr6_mann_hap4 1969054 1969055 C6orf136 + + 1962887 1969054chr6_cox_hap2 1974046 1974047 HLA-E + + 1969246 1974046chr6_mcf_hap5 1976030 1976031 MRPS18B + + 1967341 1976030chr6_ssto_hap7 1976469 1976470 KIAA1949 - - 1976469 1979473chr4 1976487 1976488 SCARNA22 + + 1976362 1976487chr11 1977839 1977840 MRPL23 + + 1968501 1977839chr6_apd_hap1 1979227 1979228 MDC1 - - 1979227 1997101chr19 1981336 1981337 CSNK1G2 + + 1941160 1981336chr4 1983930 1983931 WHSC1 + + 1894508 1983930chr4 1983930 1983931 WHSC1 + + 1894508 1983930chr4 1983934 1983935 WHSC1 + + 1894508 1983934chr4 1983934 1983935 WHSC1 + + 1873122 1983934chr4 1984442 1984443 WHSC2 - - 1984442 2010959chr19 1985446 1985447 BTBD2 - - 1985446 2015702chr6_qbl_hap6 1986127 1986128 TUBB + + 1981087 1986127chr6_dbb_hap3 1986853 1986854 TUBB + + 1981814 1986853chr4 1988110 1988111 MIR943 - - 1988110 1988204chr16 1988233 1988234 SEPX1 - - 1988233 1993294chr6_qbl_hap6 1988442 1988443 FLOT1 - - 1988442 2003382chr6_dbb_hap3 1989168 1989169 FLOT1 - - 1989168 2004112chr6_mann_hap4 1992261 1992262 KIAA1949 - - 1992261 2003768chr6_mann_hap4 1992261 1992262 KIAA1949 - - 1992261 2003189chr6_mcf_hap5 1994306 1994307 ATAT1 + + 1976468 1994306chr6_mcf_hap5 1994306 1994307 ATAT1 + + 1976468 1994306chr6_mcf_hap5 1994306 1994307 ATAT1 + + 1976468 1994306chr6_mcf_hap5 1994306 1994307 ATAT1 + + 1976518 1994306chr16 1994579 1994580 RPL3L - - 1994579 2004679chr6_mcf_hap5 1996456 1996457 ATAT1 + + 1976468 1996456chr6_mcf_hap5 1996456 1996457 ATAT1 + + 1976518 1996456chr6_ssto_hap7 1999890 1999891 MDC1 - - 1999890 2017765chr6_mcf_hap5 2002753 2002754 DHX16 - - 2002753 2022715chr6_mcf_hap5 2002753 2002754 DHX16 - - 2002753 2022715chr6_mcf_hap5 2002845 2002846 C6orf136 + + 1996673 2002845chr6_mcf_hap5 2002845 2002846 C6orf136 + + 1996673 2002845chr6_mcf_hap5 2002845 2002846 C6orf136 + + 1996673 2002845chr6_qbl_hap6 2003904 2003905 IER3 - - 2003904 2005256chr6_mann_hap4 2003921 2003922 NRM - - 2003921 2006865chr11 2004438 2004439 LOC100133545 - - 2004438 2011150chr6_dbb_hap3 2004634 2004635 IER3 - - 2004634 2005986chr6_apd_hap1 2004837 2004838 TUBB + + 1999798 2004837chr6_apd_hap1 2007152 2007153 FLOT1 - - 2007152 2009922chr16 2011976 2011977 NDUFB10 + + 2009516 2011976chr16 2012061 2012062 RPS2 - - 2012061 2014827chr16 2012334 2012335 SNORA10 - - 2012334 2012467chr16 2012973 2012974 SNORA64 - - 2012973 2013107chr16 2015311 2015312 SNORA78 + + 2015184 2015311chr16 2015505 2015506 SNHG9 + + 2014996 2015505chr6_mann_hap4 2015678 2015679 MDC1 - - 2015678 2033552chr11 2016405 2016406 H19 - - 2016405 2019065chr11 2017988 2017989 MIR675 - - 2017988 2018061

chr16 2018976 2018977 RNF151 + + 2016874 2018976chr6_cox_hap2 2021202 2021203 GNL1 - - 2021202 2037420chr6_ssto_hap7 2025502 2025503 TUBB + + 2020463 2025502chr6_mcf_hap5 2026050 2026051 KIAA1949 - - 2026050 2037557chr6_mcf_hap5 2026050 2026051 KIAA1949 - - 2026050 2036978chr6_ssto_hap7 2027817 2027818 FLOT1 - - 2027817 2042770chr16 2028751 2028752 TBL3 + + 2022063 2028751chr16 2028917 2028918 NOXO1 - - 2028917 2031440chr16 2029040 2029041 NOXO1 - - 2029040 2031184chr16 2029040 2029041 NOXO1 - - 2029040 2031184chr19 2037469 2037470 MKNK2 - - 2037469 2051243chr19 2037469 2037470 MKNK2 - - 2037469 2051243chr6_mcf_hap5 2037710 2037711 NRM - - 2037710 2040654chr16 2037750 2037751 GFER + + 2034149 2037750chr12 2038367 2038368 LOC100271702 - - 2038367 2045742chr6_mann_hap4 2041289 2041290 TUBB + + 2036250 2041289chr6_ssto_hap7 2043292 2043293 IER3 - - 2043292 2044644chr6_mann_hap4 2043604 2043605 FLOT1 - - 2043604 2058547chr16 2044276 2044277 SYNGR3 + + 2039945 2044276chr6_cox_hap2 2044522 2044523 PRR3 + + 2036534 2044522chr6_cox_hap2 2044522 2044523 PRR3 + + 2036534 2044522chr4 2045697 2045698 C4orf48 + + 2043776 2045697chr4 2045697 2045698 C4orf48 + + 2043719 2045697chr16 2047767 2047768 ZNF598 - - 2047767 2059763chr6_mcf_hap5 2049467 2049468 MDC1 - - 2049467 2067341chr12 2055213 2055214 DCP1B - - 2055213 2113677chr6_mann_hap4 2059069 2059070 IER3 - - 2059069 2060421chr6_cox_hap2 2064247 2064248 MIR877 + + 2064161 2064247chr16 2070756 2070757 NPW + + 2069520 2070756chr4 2070816 2070817 NAT8L + + 2061238 2070816chr19 2071034 2071035 MOBKL2A - - 2071034 2096269chr6_cox_hap2 2071356 2071357 ABCF1 + + 2051220 2071356chr6_cox_hap2 2071356 2071357 ABCF1 + + 2051220 2071356chr4 2073644 2073645 POLN - - 2073644 2230958chr6_mcf_hap5 2075078 2075079 TUBB + + 2070039 2075078chr6_mcf_hap5 2077393 2077394 FLOT1 - - 2077393 2090996chr6_cox_hap2 2080234 2080235 PPP1R10 - - 2080234 2097073chrY 2087554 2087555 DHRSX - - 2087554 2369015chr16 2089027 2089028 SLC9A3R2 + + 2076887 2089027chr16 2089027 2089028 SLC9A3R2 + + 2076887 2089027chr16 2089815 2089816 NTHL1 - - 2089815 2097867chr8 2093380 2093381 MYOM2 + + 1993157 2093380chr19 2099583 2099584 IZUMO4 + + 2096867 2099583chr19 2099583 2099584 IZUMO4 + + 2096867 2099583chr19 2100992 2100993 AP3D1 - - 2100992 2151556chr19 2100993 2100994 AP3D1 - - 2100993 2151556chr6_cox_hap2 2106227 2106228 MRPS18B + + 2097538 2106227chr1 2115898 2115899 C1orf86 - - 2115898 2139172chr1 2116834 2116835 PRKCZ + + 1981908 2116834chr1 2116834 2116835 PRKCZ + + 2036154 2116834chr1 2116834 2116835 PRKCZ + + 2005085 2116834chr1 2120481 2120482 LOC100128003 - - 2120481 2125024chr1 2120987 2120988 C1orf86 - - 2120987 2126214chr6_cox_hap2 2124499 2124500 ATAT1 + + 2106665 2124499chr6_cox_hap2 2124499 2124500 ATAT1 + + 2106665 2124499chr6_cox_hap2 2124499 2124500 ATAT1 + + 2106665 2124499chr6_cox_hap2 2124499 2124500 ATAT1 + + 2106715 2124499chr6_cox_hap2 2126649 2126650 ATAT1 + + 2106665 2126649chr6_cox_hap2 2126649 2126650 ATAT1 + + 2106715 2126649chr20 2129198 2129199 STK35 + + 2082527 2129198

chr6_cox_hap2 2132938 2132939 DHX16 - - 2132938 2152903chr6_cox_hap2 2132938 2132939 DHX16 - - 2132938 2152903chr6_cox_hap2 2133030 2133031 C6orf136 + + 2126866 2133030chr6_cox_hap2 2133030 2133031 C6orf136 + + 2126866 2133030chr6_cox_hap2 2133030 2133031 C6orf136 + + 2126866 2133030chrX 2137554 2137555 DHRSX - - 2137554 2419015chr16 2138710 2138711 PKD1 - - 2138710 2185899chr16 2138710 2138711 PKD1 - - 2138710 2185899chr16 2138713 2138714 TSC2 + + 2097989 2138713chr16 2138713 2138714 TSC2 + + 2097989 2138713chr16 2138713 2138714 TSC2 + + 2097989 2138713chr16 2140195 2140196 MIR1225 - - 2140195 2140285chr11 2150341 2150342 INS-IGF2 - - 2150341 2182439chr11 2150346 2150347 IGF2 - - 2150346 2162341chr11 2150346 2150347 IGF2 - - 2150346 2160204chr11 2150346 2150347 IGF2 - - 2150346 2170833chr6_qbl_hap6 2151736 2151737 MIR4640 + + 2151646 2151736chr6_dbb_hap3 2152851 2152852 MIR4640 + + 2152761 2152851chr11 2155363 2155364 MIR483 - - 2155363 2155439chr6_cox_hap2 2156238 2156239 KIAA1949 - - 21