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Report of President 2012/2013 - Conway
Institute
>> Books
>> Book Chapters
>> Books Edited
>> Peer Reviewed Journals
>> Other Journals
>> Conference Publications
>> Published Reports
>> Other Publications
Books
Professor Ronan O'Connell
Willaims NS, Bulstrode C, O'Connell PR (2013) Bailey and Love's Short Practice of
Surgery. Boca Raton: CRC Press.
Back to Top
Book Chapters
Professor Mohamed Al-Rubeai
Browne S. M. and Al-Rubeai M. (2013) 'Blood cell bioprocessing: The haematopoietic
system and current status of in-vitro production of red blood cells' In: Al-Rubeai M. and
Naciri M (eds). Stem Cells and Cell Therapy. Dordrecht: Springer.
Professor Mark Crowe
Mullen, MP; Cooke, DJ; Crowe, MA (2013) 'Structural and functional roles of FSH and
LH as glycoproteins regulating reproduction in mammalian species' In: Jorge Vizcarra
(eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.155-180
Crowe, MA; Mullen, MP (2013) 'Regulation and function of gonadotropins throughout
the bovine oestrous cycle' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In
Tech. , pp.143-154
Crowe, MA; Mullen, MP (2013) 'Relative roles of FSH and LH in stimulation of
effective follicular responses in cattle' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka,
Croatia: In Tech. , pp.125-142
Crowe, MA; Mullen, MP (2013) 'Regulation and differential secretion of gonadotropins
during post partum recovery of reproductive function in beef and dairy cows' In: Jorge
Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.107-124
Professor Michael Duffy
MJ Duffy, M Mullooly, J Crown, PM McGowan (2013) 'The ADAMs: new Therapeutic
Targets for Cancer' In: YH Bae, RJ Mrsny, K Park (eds). Cancer Targeted Drug
Delivery. New York: Springer.
Duffy MJ (2012) 'Use of Tumor markers in the Detection and Management of Patients
with Colorectal Cancer' In: C H Cho and J Yu (eds). From Inflammation to Cancer:
Advances in Diagnosis and Therapy for Gastrointestinal and Hepatological Disease.
New Jersey, London, Singapore: World Scientific. , pp.315-330
Professor Suzi Jarvis
S. P. Jarvis, G. Kaggwa and K. Sheikh (2013) 'Liquid structure at the solid-liquid
interface' In: T. Ondarcuhu and J.-P. Aim� (eds). Nanoscale Liquid Interfaces: Wetting,
Patterning and Force Microscopy at the Nanoscale. Singapore: Pan Stanford
Publishing.
Jarvis, S.P. and Mostaert, A.S. (2012) 'The fine line between pathology and physiology'
In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in
Nature. Singapore: Pan Stanford Publishing. , pp.159-166
B. Rodriguez and S. P. Jarvis (2012) 'Atomic force microscopy: An enabling
nanotechnology for diabetes research' In: Lan-Anh Le, Ross J. Hunter and Victor R.
Preedy (eds). Nanotechnology and Nanomedicine in Diabetes. USA: Science Publishers.
Mostaert, A.S. and Jarvis, S.P. (2012) 'Functional amyloid in natural adhesives' In:
Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature.
Singapore: Pan Stanford Publishing. , pp.131-146
Professor Gil Lee
Stoeckli ET, D Kilinc, B Kunz, S Kunz, GU Lee, E Martines, C Rader and D Sute
(2013) 'Analysis of cell-cell contact mediated by Ig superfamily cell adhesion molecules'
In: Juan S. Bonifacino (eds). Curr Protoc Cell Biol. NY: Wiley.
Gil U Lee, Krasimir Ivanov, Devrim Kilinc, Elena Martines, Agata Blasiak, Peng Li,
and Michael J. Higgins (2013) 'Characterization of inter- and intramolecular interactions
with the atomic force microscope' In: Corey Neu and Guy Genin (eds). CRC Handbook
of Imaging in Biological Mechanics. Oxford, UK: Taylor and Francis.
Professor David MacHugh
Hill EW, Katz LM, MacHugh DE; (2013) 'Genomics of Performance' In: Hill EW, Katz
LM, MacHugh DE; (eds). Equine Genomics. Hoboken, NJ: Wiley-Blackwell. , pp.265-
284
Dr Gethin McBean
McBean, G.J. (2013) 'The thiol redox system in glioma biology: clinical target and
significance in resistance to glioma therapy' In: Wiranowska, M. and Vrionis, F.D., Eds
(eds). Gliomas: symptoms, diagnosis and treatment options. New York: Nova Science
Publishers. , pp.321-340
McBean, G.J. (2012) 'Astrocytes and the regulation of cerebral cysteine/cystine redox
potential: implications for cysteine neurotoxicity' In: Chorkina, F.V. and Karatev, A.I.,
Eds (eds). Cysteine: biosynthesis, chemical structure and toxicity. New York: Nova
Science Publishers. , pp.135-153
Dr Anika Mostaert
Higgins, L. and Mostaert, A. S. (2013) 'Qualitative and Quantitative Study of Spiny
Starfish (Marthasterias glacialis) Footprints Using Atomic Force Microscopy' In: Santos
R., Aldred N., Gorb S. and Flammang P (eds). Biological and Biomimetic Adhesives.
Challenges and Opportunities. London, UK: RSC Publishing. , pp.26-37
Mostaert, A.S. and Jarvis, S.P. (2012) 'Functional amyloid in natural adhesives' In:
Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature.
Singapore: Pan Stanford Publishing. , pp.131-146
Jarvis, S.P. and Mostaert, A.S. (2012) 'The fine line between pathology and physiology'
In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in
Nature. Singapore: Pan Stanford Publishing. , pp.159-166
Professor Ron Pinhasi
Pinhasi R (2013) 'Holocene Migration: Europe' In: Pinhasi R (eds). The Encyclopedia of
Global Human Migration. New York: Wiley-Liss.
Pinhasi, R; Heyer, E (2013) 'Central Asia: Archaeology and genetics' In: Ness, I;
Bellwood, P (eds). The Encyclopedia of Global Human Migration. New York: Wiley-
Liss.
Professor William Powderly
WG Powderly (2012) 'Cryptococcosis' In: D. Warrell, T. Cox, J. Firth, E. Torok (eds).
Oxford Textbook of Infectious and Tropical Diseases. Oxford: Oxford University Press.
, pp.639-641
Professor Ciaran Regan
Regan CM (2013) 'The Addicted Self: A Neuroscientific Perspective' In: Regan CM
(eds). Intoxication and Society: Problematic Pleasures of Drugs and Alcohol. London:
Palgrave MacMillan.
Herring J, Regan CM, Weinberg D, Withington P (2013) 'Starting the conversation' In:
Herring J, Regan CM, Weinberg D, Withington P (eds). Intoxication and Society:
Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.
Back to Top
Books Edited
Professor Mohamed Al-Rubeai
Al-Rubeai M. and Naciri M (Ed.). (2013) Stem Cells and Cell Therapy. Dordrecht: Springer.
Professor Suzi Jarvis
S.P. Jarvis and A.S. Mostaert (Ed.). (2012) The Functional Fold. Amyloid structures in
nature. Singapore: Pan Stanford Publishing.
Professor Ciaran Regan
Herring J, Regan CM, Weinberg D, Withington P (Ed.). (2013) Intoxication and Society:
Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.
Back to Top
Peer Reviewed Journals
Professor Mohamed Al-Rubeai
Edros R., McDonnell S., Al-Rubeai M. (2013) 'Using molecular markers to characterize
productivity in Chinese hamster ovary cell lines'. PLoS ONE, 8 (10).
Kennedy E., Al-Majmaie R., Al-Rubeai M., Zerulla D., Rice J. H. (2013) 'Nanoscale
infrared absorption imaging permits non-destructive intracellular photosensitizer
localization for subcellular uptake analysis'. Rsc Advances, 3 :13789-13795.
Hilal-Alnaqbi A., Hu A., Zhang Z., Al-Rubeai M. (2013) 'Growth, metabolic activity,
and productivity of immobilized and freely suspended CHO cells in perfusion culture'.
Biotechnology and Applied Biochemistry, 60 :243-247.
Kiani H., Sun D.-W., Zhang Z., Al-Rubeai M., Naciri M. (2013) 'Ultrasound-assisted
freezing of Lactobacillus plantarum subsp. plantarum: The freezing process and cell
viability'. Innovative Food Science and Emerging Technologies, 18 :138-144.
Professor Alan Baird
Brayden DJ, Baird AW (2013) 'Opportunities for drug-delivery research in
nutraceuticals and functional foods?'. Therapeutic Delivery, 4 (3):301-305.
Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A,
Baird A, Loftus BJ, Evans AC, Carrington SD. (2012) 'Molecular aspects of mucin
biosynthesis and mucus formation in the bovine cervix during the periestrous period'.
Physiological genomics .
Medani M, Bzik VA, Rogers A, Collins D, Kennelly R, Winter DC, Brayden DJ, Baird
AW (2012) 'Zinc sulphate attenuates chloride secretion in Human colonic mucosae in
vitro'. European Journal of Pharmacology, 696 (1-3):166-171.
Mohan HM, Collins D, Maher S, Walsh EG, Winter DC, O'Brien PJ, Brayden DJ, Baird
AW (2012) 'The mycotoxin patulin increases colonic epithelial permeability in vitro'.
FOOD CHEM, 50 (11):4097-4102.
Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden
D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial
permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50
(11):4097-4102.
Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A,
Baird AW, Loftus BJ, Evans AC, Carrington SD (2012) 'Molecular aspects of mucin
biosynthesis and mucus formation in the bovine cervix during the periestrous period'.
Physiological genomics .
Dr John Andrew Baugh
Glezeva N, Collier P, Voon V, Ledwidge M, McDonald K, Watson C, Baugh J (2013)
'Attenuation of monocyte chemotaxis--a novel anti-inflammatory mechanism of action
for the cardio-protective hormone B-type natriuretic peptide'. The Journal of
Cardiovascular Translational Research, 6 (4):545-557.
Robinson CM, Watson CJ, Baugh JA (2012) 'Epigenetics within the matrix: A neo-
regulator of fibrotic disease'. Epigenetics : official journal of the DNA Methylation
Society, 7 (9):987-993.
Collier P, Watson CJ, Waterhouse DF, Dawkins IR, Patle AK, Horgan S, Conlon CM,
O'Hanlon R, Baugh JA, Ledwidge MT, McDonald K (2012) 'Progression of left atrial
volume index in a population at risk for heart failure: a substudy of the STOP-HF (St
Vincent's Screening TO Prevent Heart Failure) trial'. European Journal of Heart
Failure, 14 (9):957-964.
Dr Orina Belton
McCarthy, C,Duffy, MM,Mooney, D,James, WG,Griffin, MD,Fitzgerald, DJ,Belton, O
(2013) 'IL-10 mediates the immunoregulatory response in conjugated linoleic acid-
induced regression of atherosclerosis'. The FASEB journal : official publication of the
Federation of American Societies for Experimental Biology, 27 :499-510.
Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney,
AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic
health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24 :401-411.
McCarthy C, Duffy MM, Mooney D, James WG, Griffin MD, Fitzgerald DJ, Belton O.
(2012) 'IL-10 mediates the immunoregulatory response in conjugated linoleic acid-
induced regression of atherosclerosis'. FASEB Journal, [Epub ahead of print] .
Dr Oliver Blacque
Olivier-Mason A, Wojtyniak M, Bowie RV, Nechipurenko IV, Blacque OE, Sengupta P
(2013) 'Transmembrane protein OSTA-1 shapes sensory cilia morphology via regulation
of intracellular membrane trafficking in C. elegans'. Development, 140 (7):1560-1572.
Professor Billy Bourke
Alvarez LA, Bourke B, Pircalabioru G, Georgiev AY, Knaus UG, Daff S,
Corcionivoschi (2013) 'Cj1411c Encodes for a Cytochrome P450 Involved in
Campylobacter jejuni 81-176 Pathogenicity'. PLoS ONE, 26 (8).
Julie Ann Naughton JA, Mari�o K, Dolan B, Reid C, Gough R, Gallagher ME,
Kilcoyne M, Gerlach JQ, Joshi L, Rudd P, Carrington S, �Clyne M, �Billy Bourke B
(�.Joint Snr Co-authors). (2013) 'Divergent mechanisms of interaction of Helicobacter
pylori and Campylobacter jejuni with mucus and mucins'. Infection and Immunity, 81
:2838-2850.
Crowley E, Bourke B, Hussey S (2013) 'How to use Helicobacter pylori testing in
paediatric practice'. Archives Of Disease In Childhood-Education And Practice Edition,
98 (1):18-25.
Professor David Brayden
Ryan, S. M., McMorrow, J., Umerska, A., Patel, H. B., Kornerup, K. N., Tajber, L.,
Murphy, E. P., Perretti, M., Corrigan, O. I., & & Brayden, D. J. (2013) 'An intra-
articular salmon calcitonin-based nanocomplex reduces experimental inflammatory
arthritis'. Journal of controlled release : official journal of the Controlled Release
Society, 167 :120-129.
Brayden DJ, Baird AW (2013) 'Opportunities for drug-delivery research in
nutraceuticals and functional foods?'. Therapeutic Delivery, 4 (3):301-305.
Petersen, S. B., Nielsen L.G., Rahbek, U.L. Guldbrandt, M. & Brayden, D. J. (2013)
'Colonic absorption of salmon calcitonin using tetradecyl maltoside (TDM) as a
permeation enhancer'. European Journal of Pharmaceutical Sciences, 48 :726-734.
Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden
D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial
permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50
(11):4097-4102.
Petersen, S. B, Nolan,G., Maher, S., Rahbek,U. L., Guldbrandt,M, Brayden, D. J. (2012)
'Evaluation of alkyl maltosides as intestinal permeation enhancers: Comparison between
rat intestinal mucosal sheets and Caco-2 monolayers'. European Journal of
Pharmaceutical Sciences .
Dr Lorraine Brennan
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L
(2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy
adults'. Molecular Nutrition and Food Research .
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013)
'Identification of differential responses to an oral glucose tolerance test in healthy
adults'. PLoS ONE, 8 (8).
Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013)
'Predictive value of bovine follicular components as markers of oocyte developmental
potential'. Reproduction, fertility, and development .
Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway
SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater
physiological and performance adaptations than a threshold model in trained cyclists'.
Journal of Applied Physiology, 114 (4):461-471.
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan,
L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic
response of healthy adults'. American Journal of Clinical Nutrition, 97 :261-267.
Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013)
'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'.
Clinical Interventions in Aging, 8 :19-27.
Neal, CM,Hunter, AM,Brennan, L,O'Sullivan, A,Hamilton, DL,DeVito, G,Galloway,
SDR (2013) 'Six weeks of a polarized training-intensity distribution leads to greater
physiological and performance adaptations than a threshold model in trained cyclists'.
Journal of applied physiology (Bethesda, Md. : 1985), 114 :461-471.
Brennan, L (2013) 'Metabolomics in nutrition research: current status and perspectives'.
Biochemical Society Transactions, 41 :670-673.
Monahan FJ, Moloney AP, Osorio MT, R�hrle FT, Schmidt O and Brennan L (2012)
'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food
Science & Technology, 28 (2):69-76.
Professor Geraldine Butler
Mohan Pammi, Linda Holland, Geraldine Butler, Attila Gacser, Joseph M. Bliss (2013)
'Candida parapsilosis is a Significant Neonatal Pathogen: A Systematic Review and
Meta-analysis'. Pediatric Infectious Disease Journal .
Anastasia Gioti, Bj�rn Nystedt, Wenjun Li, Jun Xud, Anna Andersson, Anna F.
Averette, Karin M�nch, Xuying Wang, Catharine Kappauf, Joanne M. Kingsbury, Bart
Kraak, Louise A. Walker, Henrik J. Johansson, Tina Holm, Janne Lehti�, Jason E.
Stajich, Piotr Mieczkowski, Regine Kahmann, John C. Kennell, Maria E. Cardenas,
Joakim Lundeberg, Charles W. Saunders, Teun Boekhout, Thomas L. Dawson, Carol A.
Munro, Piet W.J. de Groot, Geraldine Butler, Joseph Heitman, and Annika Scheynius*
(2013) 'Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast
Malassezia sympodialis'. mBIO .
Connolly LA, Riccombeni A, Gr�zer Z, Holland LM, Lynch DB, Andes DR, G�cser
A, Butler G. (2013) 'The APSES transcription factor Efg1 is a global regulator that
controls morphogenesis and biofilm formation in Candida parapsilosis'. Molecular
Microbiology .
Maguire SL, Oh�igeartaigh SS, Byrne KP, Schr�der MS, O'Gaora P, Wolfe KH,
Butler G (2013) 'Comparative Genome Analysis and Gene Finding in Candida Species
Using CGOB'. Molecular Biology and Evolution, 30 (6):1281-1291.
Butler, G. (2013) 'Hypoxia and Gene Expression in Eukaryotic Microbes'. Annual
Review of Microbiology .
Gioti, A,Nystedt, B,Li, WJ,Xu, J,Andersson, A,Averette, AF,Munch, K,Wang,
XY,Kappauf, C,Kingsbury, JM,Kraak, B,Walker, LA,Johansson, HJ,Holm, T,Lehtio,
J,Stajich, JE,Mieczkowski, P,Kahmann, R,Kennell, JC,Cardenas, ME,Lundeberg,
J,Saunders, CW,Boekhout, T,Dawson, TL,Munro, CA,de Groot, PWJ,Butler,
G,Heitman, J,Scheynius, A (2013) 'Genomic Insights into the Atopic Eczema-
Associated Skin Commensal Yeast Malassezia sympodialis'. mBio, 4 .
Alessandro Riccombeni and Geraldine Butler (2012) 'Role of Genomics and RNA-seq in
Studies of Fungal Virulence'. Current Fungal Infection Reports .
Dr Gerard Cagney
Casey WT, Nikodinovic-Runic J, Fonseca Garcia P, Guzik MW, McGrath JW, Quinn
JP, Cagney G, Prieto MA, O'Connor KE (2013) 'The effect of polyphosphate kinase
gene deletion on polyhydroxyalkanoate accumulation and carbon metabolism in
Pseudomonas putida KT2440'. Environmental Microbiology, 5 :740-746.
Di Cara F, Duca E, Dunbar DR, Cagney G, Heck MM. (2013) 'Invadolysin, a conserved
lipid-droplet-associated metalloproteinase, is required for mitochondrial function in
Drosophila'. Journal of Cell Science, 126 :4769-4781.
Ryan CJ, Krogan NJ., Cunningham P, Cagney, G. (2013) 'All or nothing: protein
complexes flip essentiality between distantly related eukaryotes'. Genome Biology and
Evolution .
Roguev A, Talbot D, Negri GL, Shales M, Cagney G, Bandyopadhyay S, Panning B,
Krogan NJ (2013) 'Quantitative genetic-interaction mapping in mammalian cells'.
Nature Methods, 10 (5):432-437.
Scanlon KA, Cagney C, Walsh D, McNulty D, Carroll A, McNamara EB, McDowell
DA, Duffy G (2013) 'Occurrence and characteristics of fastidious Campylobacteraceae
species in porcine samples'. International Journal of Food Microbiology, 163 (1):6-13.
Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ,
Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ,
Cagney G, Bracken AP. (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2
and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature
structural & molecular biology, 19 (12):1273-1281.
Professor Sean Callanan
Cahalan SD Hick G Rossiter A Callanan JJ (2013) 'Fatal fibrinosuppurative meningitis
in a dog associated with Prevotella oralis infection'. Journal of Small Animal Practice,
54 (3) :153-155.
Quinliven M Cook F, Kenna R, Callanan JJ Cullinane A (2013) 'Genetic
characterization by composite sequence analysis of a new pathogenic field strain of
equine infectious anemia virus from the 2006 outbreak in Ireland'. Journal of General
Virology, 94 :612-622.
Chapwanya A Meade KG Doherty ML Callanan JJ O'Farrelly C (2013) 'Endometrial
epithelial cells are potent producers of tracheal antimicrobial peptide and serum amyloid
A3 gene expression in response to E Coli stimulation'. Veterinary Immunology and
Immunopathology, 151 :157-162.
Yang S, Wang B, Tang LS, Siednienko J, Callanan JJ, Moynagh PN (2013) 'Pellino3
targets RIP1 and regulates the pro-apoptotic effects of TNF-α'. Nature communications,
4 .
Terzo E, McConnell JF, Shiel RE, McAllister H, Behr S, Priestnall SL, Smith KC,
Nolan CM, Callanan JJ (2012) 'Unique topographic distribution of greyhound
nonsuppurative meningoencephalitis'. Veterinary radiology & ultrasound : the official
journal of the American College of Veterinary Radiology and the International
Veterinary Radiology Association .
Siednienko J, Jackson R, Mellett M, Delagic N, Yang S, Wang B, Tang LS, Callanan JJ,
Mahon BP, Moynagh PN. (2012) 'Pellino 3 targets the IRF7 pathway and facilitates
autofegulation of TLR3 and viral-induced expression of type 1 interferons'. NATURE
IMMUNOLOGY .
Foley C, Chapwanya A, Creevey C, Narciandi F, Morris D, Kenny E, Cormican P,
Callanan JJ, O'Farrelly C, Meade KG. (2012) 'Global endometrial transcriptomic
profiling: transient immune activation precedes tissue proliferation and repair in healthy
beef cows'. BMC Genomics .
Dr Marguerite Clyne
Devon W. Kavanaugh, John O'Callaghan, Ludovica F. Butt�, Helen Slattery, Jonathan
Lane, Marguerite Clyne, Marian Kane, Lokesh Joshi, Rita M. Hickey (2013) 'Exposure
of Bifidobacterium longum subsp. infantis to Milk Oligosaccharides Increases Adhesion
to Epithelial Cells and Induces a Substantial Transcriptional Response'. PLoS ONE .
Julie Ann Naughton JA, Mari�o K, Dolan B, Reid C, Gough R, Gallagher ME,
Kilcoyne M, Gerlach JQ, Joshi L, Rudd P, Carrington S, �Clyne M, �Billy Bourke B
(�.Joint Snr Co-authors). (2013) 'Divergent mechanisms of interaction of Helicobacter
pylori and Campylobacter jejuni with mucus and mucins'. Infection and Immunity, 81
:2838-2850.
Dolan B, Naughton J, Tegtmeyer N, May FE, Clyne M. (2012) 'The Interaction of
Helicobacter pylori with the Adherent Mucus Gel Layer Secreted by Polarized HT29-
MTX-E12 Cells'. PLoS ONE, 7 (10).
Yan D, Naughton J, Clyne M, Murphy PV. (2012) 'Synthesis of bivalent glycoclusters
containing GlcNAc as hexasaccharide mimetics. Bactericidal activity against
Helicobacter pylori'. Carbohydrate research, 360 :1-7.
Dr John Crean
Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP.,
Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin
related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics .
David H Kavanagh, David A Savage, Christopher C Patterson, Amy Jayne McKnight
John Crean, Alexander P Maxwell, Gareth J McKay. (2013) 'Haplotype association
analysis of genes within the WNT signalling pathways indiabetic nephropathy BMC
Nephrology 2013, 14:126'. Nephrology .
Hookham MB, O'Donovan HC, Church RH, Mercier-Zuber A, Luzi L, Curran SP,
Carew RM, Droguett A, Mezzano S, Schubert M, White MF, Crean JK, Brazil DP
(2013) 'Insulin receptor substrate-2 is expressed in kidney epithelium and up-regulated
in diabetic nephropathy'. FEBS Journal .
Faherty N, Curran SP, O'Donovan H, Martin F, Godson C, Brazil DP, and Crean J
(2012) 'CCN2/CTGF increases expression of miR-302 microRNAs, which target the
TGFβ type II receptor with implications for nephropathic cell phenotypes'. Journal of
Cell Science .
Professor Mark Crowe
Beltman ME, Forde N, Lonergan P, Crowe MA (2013) 'Altered endometrial immune
gene expression in beef heifers with retarded embryos'. Reproduction Fertility and
Development, 25 (6):966-970.
Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The
Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'.
Reproduction in domestic animals = Zuchthygiene, 48 :888-892.
Herlihy, MM,Crowe, MA,Berry, DP,Diskin, MG,Butler, ST (2013) 'Factors associated
with fertility outcomes in cows treated with protocols to synchronize estrus and
ovulation in seasonal-calving, pasture-based dairy production systems'. Journal of Dairy
Science, 96 (3):1485-1498.
Mullen MP, Bazer FW, Wu G, Parr MH, Evans AC, Crowe MA, Diskin MG (2013)
'Effects of systemic progesterone during the early luteal phase on the availabilities of
amino acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and
development .
Herlihy MM, Giordano JO, Souza AH, Ayres H, Ferreira RM, Keskin A. Nascimento
AB, Guenther JN, Gaska JM, Kacuba SJ, Crowe MA, Butler ST, Wiltbank MC (2012)
'Presynchronization with Double-Ovsynch improves fertility at first postpartum artificial
insemination in lactating dairy cows'. Journal of Dairy Science, 95 (12):7003-7014.
Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012)
'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of
Reproduction, 87 (5):124, 1-11.
Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia
N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012)
'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon
and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.
Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan,
FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development
in beef heifers'. Animal Reproduction Science, 133 (3):139-145.
Professor Michael Duffy
Duffy Michael (2013) 'Investigation of Molecular Alterations of AKT-3 in Triple
Negative Breast Cancer'. Histopathology .
Duffy Michael (2013) 'Comparative antiproliferative effects of iniparib and olaparib on
a panel of triple-negative and non-triple-negative breast cancer cell lines'. Cancer
Biology & Therapy .
Duffy MJ, Lamerz R, Haglund C, Nicolini A, Kalousová M, Holubec L, Sturgeon C
(2013) 'Tumor markers in colorectal cancer, gastric cancer and gastrointestinal stromal
cancers: European group on tumor markers 2014 guidelines update'. INT J CANCER .
Duffy MJ (2013) 'The war on cancer: are we winning?'. Tumour biology : the journal of
the International Society for Oncodevelopmental Biology and Medicine, 34 (3):1275-
1284.
O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ,
McCann AH, Pontén F, Uhlén M, Zagozdzon R, Duffy MJ, Kell MR, Jirström K,
Gallagher WM (2013) 'Systematic antibody generation and validation via tissue
microarray technology leading to identification of a novel protein prognostic panel in
breast cancer'. BMC Cancer, 13 .
Soletormos, G,Duffy, MJ,Hayes, DF,Sturgeon, CM,Barak, V,Bossuyt, PM,Diamandis,
EP,Gion, M,Hyltoft-Petersen, P,Lamerz, RM,Nielsen, DL,Sibley, P,Tholander,
B,Tuxen, MK,Bonfrer, JMG (2013) 'Design of Tumor Biomarker-Monitoring Trials: A
Proposal by the European Group on Tumor Markers'. Clinical Chemistry, 59 :52-59.
Duffy MJ, McGowan PM, Crown J (2012) 'Targeted therapy for triple-negative breast
cancer: Where are we?'. INT J CANCER, 131 (11):2471-2477.
Browne BC, Eustace AJ, Kennedy S, O'Brien NA, Pedersen K, McDermott MS, Larkin
A, Ballot J, Mahgoub T, Sclafani F, Madden S, Kennedy J, Duffy MJ, Crown J,
O'Donovan N (2012) 'Evaluation of IGF1R and phosphorylated IGF1R as targets in
HER2-positive breast cancer cell lines and tumours'. Breast Cancer Research and
Treatment .
Sölétormos G, Duffy MJ, Hayes DF, Sturgeon CM, Barak V, Bossuyt PM, Diamandis
EP, Gion M, Hyltoft-Petersen P, Lamerz RM, Nielsen DL, Sibley P, Tholander B,
Tuxen MK, Bonfrer JM (2012) 'Design of Tumor Biomarker-Monitoring Trials: A
Proposal by the European Group on Tumor Markers'. Clinical Chemistry .
McGowan PM, Mullooly M, Caiazza F, Sukor S, Madden SF, Maguire AA, Pierce A,
McDermott EW, Crown J, O'Donovan N, Duffy MJ (2012) 'ADAM-17: a novel
therapeutic target for triple negative breast cancer'. Annals of Oncology .
Professor Paul Engel
Munawar, N,Engel, PC (2013) 'Prospects for robust biocatalysis: engineering of novel
specificity in a halophilic amino acid dehydrogenase'. Extremophiles, 17 :43-51.
Xuejing Yu, Julia Bresser, Iris Schall, Ivana Djurdjevic, Wolfgang Buckel, Xingguo
Wang and Paul C. Engel (2012) 'Development of a satisfactory and general continuous
assay for aminotransferases by coupling with (R)-2-hydroxyglutarate dehydrogenase'.
Analytical Biochemistry, 431 (2):127-131.
Sharkey MA, Gori A, Capone M and Engel PC (2012) 'Reversal of the extreme
coenzyme selectivity of Clostridium symbiosum glutamate dehydrogenase'. FEBS
Journal, 279 (17):3003-3009.
Professor Alexander Evans
F Mossa, F Carter, SW Walsh, DA Kenny, GW Smith, P Lonergan, JLH Ireland, JJ
Ireland, ACO Evans (2013) 'Maternal undernutrition of heifers diminishes the size of
ovarian reserve and increases arterial blood pressure in the offspring'. Biology of
Reproduction, 88 (4):1-9.
MP Mullen, FW Bazer, G Wu, MH Parr, ACO Evans, MA Crowe, MG Diskin (2013)
'Effects of systemic progesterone during the early luteal phase on availabilities of amino
acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and development
.
L O'Hara, N Forde, F Carter, D Rizos,V Maillo, AD Ealy, AK Kelly, P Rodriguez, N
Isaka, ACO Evans, P Lonergan (2013) 'Paradoxical effect of supplementary
progesterone between day 13 and 7 on corpus luteum function and conceptus
development in cattle'. Reproduction, fertility, and development .
SW Walsh, T Fair, JA Browne, ACO Evans, PA Gettigan (2012) 'Physiological status
alters immunological regulation of bovine follicle differentiation in dairy cattle'.
JOURNAL OF REPRODUCTIVE IMMUNOLOGY, 96 .
K Pluta, PA Mc Gettigan, CJ Reid, JA Browne, JA Irwin, T Tharmalingam, T Corfield,
A Baird, BJ Loftus, AC Evans, SD Carrington. (2012) 'Molecular aspects of mucin
biosynthesis and mucin formation in the bovine cervix during periestrous period'.
Physiological genomics, 44 (42):1165-1178.
Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter,
F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an
imprinted gene in cattle'. Animal Genetics, 43 (5):587-590.
Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass
dry matter intake and fat supplementation on progesterone metabolism in lactating dairy
cows'. Theriogenology, 78 (4):878-886.
Dr Neil Ferguson
Alexander, C.G., Jurgens, M.C., Shepherd, D.A., Freund, S.M.V., Ashcroft, A.E &
Ferguson, N. (2013) 'Thermodynamic origins of protein folding, allostery and capsid
formation in the human hepatitis B virus core protein'. PNAS, 110 .
J�rgens, M.C., V�r�s, J., Rautureau, G.J.P., Shepherd, D.AS., Pye, V.E., Muldoon,
J., Johnson, C.M., Ashcroft, A.E., Freund, S.M.V. & Ferguson, N. (2013) 'The hepatitis
B virus preS1 domain hijacks host trafficking proteins by motif mimicry'. Nature
Chemical Biology, 9 (9).
Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ,
Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ,
Cagney G, Bracken AP (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2
and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature
structural & molecular biology .
Professor Oliver Fitzgerald
Mongey AB, Doran JP, Kleinerova J, Fitzgerald O, McDonnell TJ. (2013) 'Late onset
tuberculosis infection in patients receiving anti-TNFα therapy'. QJM : monthly journal
of the Association of Physicians .
Boehncke WH, Kirby B, Fitzgerald O, van de Kerkhof PC (2013) 'New developments in
our understanding of psoriatic arthritis and their impact on the diagnosis and clinical
management of the disease'. J Am Acad Dermatol .
FitzGerald O, Mease PJ (2013) 'Biomarkers: project update from the GRAPPA 2012
annual meeting'. Journal of Rheumatology .
Helliwell PS, Mease PJ, FitzGerald O, Taylor WJ, van der Heijde D. (2013) 'Peripheral
spondyloarthritis and psoriatic arthritis; overlaps and distinctions: a report from the
GRAPPA 2012 annual meeting'. Journal of Rheumatology .
Cobb JE, Plant D, Flynn E, Tadjeddine M, Dieud� P, Corn�lis F, �rlestig L,
Dahlqvist SR, Goulielmos G, Boumpas DT, Sidiropoulos P, Krintel SB, �rnbjerg LM,
Hetland ML, Klareskog L, Haeupl T, Filer A, Buckley CD, Raza K, Witte T, Schmidt
RE, FitzGerald O, Veale D, Eyre S, Worthington J. (2013) 'Identification of the
tyrosine-protein phosphatase non-receptor type 2 as a rheumatoid arthritis susceptibility
locus in europeans'. PLoS ONE .
Smolen JS, Braun J, Dougados M, Emery P, Fitzgerald O, Helliwell P, Kavanaugh A,
Kvien TK, Landew� R, Luger T, Mease P, Olivieri I, Reveille J, Ritchlin C, Rudwaleit
M, Schoels M, Sieper J, Wit MD, Baraliakos X, Betteridge N, Burgos-Vargas R,
Collantes-Estevez E, Deodhar A, Elewaut D, Gossec L, Jongkees M, Maccarone M,
Redlich K, van den Bosch F, Wei JC, Winthrop K, van der Heijde D. (2013) 'Treating
spondyloarthritis, including ankylosing spondylitis and psoriatic arthritis, to target:
recommendations of an international task force'. Annals of Rheumatic Diseases .
Schoels MM, Braun J, Dougados M, Emery P, Fitzgerald O, Kavanaugh A, Kvien TK,
Landew� R, Luger T, Mease P, Olivieri I, Reveille J, Ritchlin C, Rudwaleit M, Sieper
J, Smolen JS, Wit MD, van der Heijde D (2013) 'Treating axial and peripheral
spondyloarthritis, including psoriatic arthritis, to target: results of a systematic literature
search to support an international treat-to-target recommendation in spondyloarthritis'.
Annals of Rheumatic Diseases .
Coates LC, FitzGerald O, Gladman DD, McHugh N, Mease P, Strand V, Helliwell PS.
(2013) 'Reduced joint counts misclassify patients with oligoarticular psoriatic arthritis
and miss significant numbers of patients with active disease'. Arthritis Rheumatology .
Collins, E.S., Galligan, M.C., Saldova, R., Adamczyk, B., Abrahams, J.L., Campbell,
M.P., Ng, C.T., Veale, D.J., Murphy, T.B., Rudd, P.M., FitzGerald, O. (2013)
'Glycosylation Status of Serum in Inflammatory Arthritis in Response to Anti-TNF
Treatment'. Rheumatology, 52 (9):1572-1582.
Szentpetery A, McKenna MJ, Murray BF, Ng CT, Brady JJ, Morrin M, Radovits B,
Veale DJ, Fitzgerald O. (2013) 'Periarticular bone gain at proximal interphalangeal
joints and changes in bone turnover markers in response to tumor necrosis factor
inhibitors in rheumatoid and psoriatic arthritis'. Journal of Rheumatology .
Putrik P, Ramiro S, Kvien TK, Sokka T, Pavlova M, Uhlig T, Boonen A (2013)
'Working Group 'Equity in access to treatment of rheumatoid arthritis in Europe'.
Inequities in access to biologic and synthetic DMARDs across 46 European countries'.
Annals of Rheumatic Diseases .
Apel, M,Uebe, S,Bowes, J,Giardina, E,Korendowych, E,Juneblad, K,Pasutto, F,Ekici,
AB,McManus, R,Ho, P,Bruce, IN,Ryan, AW,Behrens, F,Bohm, B,Traupe, H,Lohmann,
J,Gieger, C,Wichmann, HE,Padyukov, L,FitzGerald, O,Alenius, GM,McHugh,
NJ,Novelli, G,Burkhardt, H,Barton, A,Reis, A,Huffmeier, U (2013) 'Variants in RUNX3
Contribute to Susceptibility to Psoriatic Arthritis, Exhibiting Further Common Ground
With Ankylosing Spondylitis'. Arthritis and Rheumatism, 65 :1224-1231.
French HP, Cusack T, Brennan A, White B, Gilsenan C, Fitzpatrick M, O'Connell P,
Kane D, Fitzgerald O, McCarthy GM (2013) 'Exercise and Manual therapy Arthritis
Research trial (EMPART) for osteoarthritis of the hip: A Multicentre Randomised
Controlled trial'. Archives of Physical Medicine and Rehabilitation .
Tsoi LC, Spain SL, Knight J, Ellinghaus E, Stuart PE, Capon F, Ding J, Li Y, Tejasvi T,
Gudjonsson JE, Kang HM, Allen MH, McManus R, Novelli G, Samuelsson L,
Schalkwijk J, St�hle M, Burden AD, Smith CH, Cork MJ, Estivill X, Bowcock AM,
Krueger GG, Weger W, Worthington J, Tazi-Ahnini R, Nestle FO, Hayday A,
Hoffmann P, Winkelmann J, Wijmenga C, Langford C, Edkins S, Andrews R,
Blackburn H, Strange A, Band G, Pearson RD, Vukcevic D, Spencer CC, Deloukas P,
Mrowietz U, Schreiber S, Weidinger S, Koks S, Kingo K, Esko T, Metspalu A, Lim
HW, Voorhees JJ, Weichenthal M, Wichmann HE, Chandran V, Rosen CF, Rahman P,
Gladman DD, Griffiths CE, Reis A, Kere J (2012) 'Collaborative Association Study of
Psoriasis (CASP); Genetic Analysis of Psoriasis Consortium; Psoriasis Association
Genetics Extension; Wellcome Trust Case Control Consortium 2, Nair RP, Franke A,
Barker JN, Abecasis GR, Elder JT, Trembath RC. Identification of 15 new psoriasis
susceptibility loci highlights the role of innate immunity'. Nature Genetics .
Helliwell PS, Fitzgerald O, Mease PJ, Gladman DD. (2012) 'GRAPPA Responder Index
Project (GRACE): a report from the GRAPPA 2011 annual meeting'. Journal of
Rheumatology .
FitzGerald O. (2012) 'Diagnosis: Screening for arthritis in patients with psoriasis'.
Rheumatology .
Doyle MS, Collins ES, Fitzgerald OM, Pennington SR. (2012) 'New insight into the
functions of the interleukin-17 receptor adaptor protein Act1 in psoriatic arthritis'.
Arthritis Research & Therapy .
Professor William Gallagher
Madden S. F., Clarke C., Aherne S. T., Gaule P., O'Donovan N., Crown J., Clynes M.,
Gallagher W.M. (2013) 'BreastMark: an integrated approach to mining publicly
available transcriptomic datasets relating to breast cancer outcome'. Breast Cancer
Research, 15 (4).
Clarke C, Madden SF, Doolan P, Aherne ST, Joyce H, O' Driscoll L, Gallagher WM,
Hennessy BT, Moriarty M, Crown J, Kennedy S, Clynes M (2013) 'Correlating
transcriptional networks to breast cancer survival: A large-scale coexpression analysis'.
Carcinogenesis .
Prencipe M, Madden SF, O'Neill A, O'Hurley G, Culhane A, O'Connor D, Klocker H,
Kay EW, Gallagher WM, Watson WR. (2013) 'Identification of transcription factors
associated with castration-resistance: is the serum responsive factor a potential
therapeutic target?'. Prostate, 73 (7):743-753.
Rexhepaj E, Agnarsd�ttir M, Bergman J, Edqvist PH, Bergqvist M, Uhl�n M,
Gallagher WM, Lundberg E, Ponten F. (2013) 'A texture based pattern recognition
approach to distinguish melanoma from non-melanoma cells in histopathological tissue
microarray sections'. PLoS ONE, 8 (5).
O'Connor S, Szwej E, Nikodinovic-Runic J, O'Connor A, Byrne AT, Devocelle M,
O'Donovan N, Gallagher WM, Babu R, Kenny ST, Zinn M, Zulian QR, O'Connor KE
(2013) 'The anti-cancer activity of a cationic anti-microbial peptide derived from
monomers of polyhydroxyalkanoate'. Biomaterials, 34 (11):2710-2718.
O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ,
McCann AH, Pont�n F, Uhl�n M, Zagozdzon R, Duffy MJ, Kell MR, Jirstr�m K,
Gallagher WM (2013) 'Systematic antibody generation and validation via tissue
microarray technology leading to identification of a novel protein prognostic panel in
breast cancer'. BMC Cancer, 13 (175).
Mitchem JB, Brennan DJ, Knolhoff BL, Belt BA, Zhu Y, Sanford DE, Belaygorod L,
Carpenter D, Collins L, Piwnica-Worms D, Hewitt S, Udupi GM, Gallagher WM,
Wegner C, West BL, Wang-Gillam A, Goedegebuure P, Linehan DC, DeNardo DG.
(2013) 'Targeting tumor-infiltrating macrophages decreases tumor-initiating cells,
relieves immunosuppression, and improves chemotherapeutic responses'. Cancer
Research, 73 (3):1128-1141.
Mulrane L, Madden SF, Brennan DJ, Gremel G, McGee SF, McNally S, Martin F,
Crown JP, Jirstr�m K, Higgins DG, Gallagher WM, O'Connor DP (2012) 'miR-187 Is
an Independent Prognostic Factor in Breast Cancer and Confers Increased Invasive
Potential In Vitro'. Clinical Cancer Research .
Professor Declan Gerard Gilheany
Peter A. Byrne, Declan G. Gilheany (2013) 'The modern interpretation of the Wittig
reaction mechanism'. Chemical Society Reviews, 42 .
Arne Ficks, Rachel M. Hiney, Ross W. Harrington, Declan G. Gilheany, Lee J. Higham,
(2012) 'MOP-phosphonites: A novel ligand class for asymmetric catalysis'. Dalton
Transactions, 41 .
Peter A. Byrne, Lee J. Higham, Padraic McGovern, Declan G. Gilheany (2012)
'Anomalous Z-isomer content in Wittig reaction products from keto-stabilised ylides
with ortho-heteroatom substituted benzaldehydes'. Tetrahedron Letters, 53 (49):6701-
6704.
Kirill Nikitin, Helge Mueller-Bunz, Declan G. Gilheany (2012) 'Direct evidence of a
multicentre halogen bond: unexpected contraction of the P-XXX-P fragment in
triphenylphosphine dihalides'. Chemical Communications, 49 (14):1434-1436.
Professor Catherine Godson
Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP.,
Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin
related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics .
Corcoran JB, McCarthy S, Griffin B, Gaffney A, Bhreathnach U, Börgeson E, Hickey
FB, Docherty NG, Higgins DF, Furlong F, Martin F, Godson C, Murphy M (2013)
'IHG-1 must be localised to mitochondria to decrease Smad7 expression and amplify
TGF-β1-induced fibrotic responses'. Biochimica et biophysica acta, 1833 (8):1969-1978.
Brennan EP, Nolan KA, Börgeson E, Gough OS, McEvoy CM, Docherty NG, Higgins
DF, Murphy M, Sadlier DM, Ali-Shah ST, Guiry PJ, Savage DA, Maxwell AP, Martin
F, Godson C (2013) 'Lipoxins attenuate renal fibrosis by inducing let-7c and suppressing
TGFβR1'. Journal of the American Society of Nephrology, 24 (4):627-637.
Brennan, EP,Nolan, KA,Borgeson, E,Gough, OS,McEvoy, CM,Docherty, NG,Higgins,
DF,Murphy, M,Sadlier, DM,Ali-Shah, ST,Guiry, PJ,Savage, DA,Maxwell, AP,Martin,
F,Godson, C (2013) 'Lipoxins Attenuate Renal Fibrosis by Inducing let-7c and
Suppressing TGF beta R1'. J AM SOC NEPHROL, 24 :627-637.
Murphy M, Hickey F, Godson C (2013) 'IHG-1 amplifies TGF-β1 signalling and
mitochondrial biogenesis and is increased in diabetic kidney disease'. Current Opinion
in Nephrology and Hypertension, 22 (1):77-84.
Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F.,
Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose
inflammation'. FASEB J, 26 (10):4287-94.
Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P,
Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB
Journal, 26 (10):4287-4294.
Faherty N, Curran SP, O'Donovan H, Martin F, Godson C, Brazil DP, and Crean J
(2012) 'CCN2/CTGF increases expression of miR-302 microRNAs, which target the
TGFβ type II receptor with implications for nephropathic cell phenotypes'. Journal of
Cell Science .
Professor Stephen Gordon
Allen AR, Dale J, McCormick C, Mallon TR, Costello E, Gordon SV, Hewinson RG,
Skuce RA, Smith NH (2013) 'The phylogeny and population structure of
Mycobacterium bovis in the British Isles'. Infection Genetics And Evolution, 20C :8-15.
Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T,
Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B,
Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB,
Aseffa A (2013) 'Mycobacterial lineages causing pulmonary and extrapulmonary
tuberculosis, Ethiopia'. Emerging Infectious Diseases, 19 (3):460-463.
Gouzy, A,Nigou, J,Gilleron, M,Neyrolles, O,Tailleux, L,Gordon, SV (2013)
'Tuberculosis 2012: biology, pathogenesis and intervention strategies; an update from
the city of light'. Research in Microbiology, 164 :270-280.
Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-
Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon,
SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence
analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'.
BMC Genomics, 14 .
Sharkey, MA; O'Gara, JP; Gordon, SV; Hackenberg, F; Healy, C; Paradisi, F; Patil, S;
Schaible, B; Tacke, M (2012) 'Investigations into the Antibacterial Activity of the
Silver-Based Antibiotic Drug Candidate SBC3'. Antibiotics, 1 :25-28.
Professor Andrew Green
Dobson MG, Darlow JM, Hunziker M, Green AJ, Barton DE, Puri P. (2013)
'Heterozygous non-synonymous ROBO2 variants are unlikely to be sufficient to cause
familial vesicoureteric reflux'. Kidney International .
McGorrian C, Constant O, Harper N, O'Donnell C, Codd M, Keelan E, Green A, O'Neill
J, Galvin J, Mahon NG. (2013) 'Family-based cardiac screening in relatives of victims of
sudden arrhythmic death syndrome'. Europace .
Palles C, Cazier JB, Howarth KM, Domingo E, Jones AM, Broderick P, Kemp Z, Spain
SL, Almeida EG, Salguero I, Sherborne A, Chubb D, Carvajal-Carmona LG, Ma Y,
Kaur K, Dobbins S, Barclay E, Gorman M, Martin L, Kovac MB, Humphray S; CORGI
Consortium; WGS500 Consortium, Lucassen A, Holmes CC, Bentley D, Donnelly P,
Taylor J, Petridis C, Roylance R, Sawyer EJ, Kerr DJ, Clark S, Grimes J, Kearsey SE,
Thomas HJ, McVean G, Houlston RS, Tomlinson I. (2013) 'Germline mutations
affecting the proofreading domains of POLE and POLD1 predispose to colorectal
adenomas and carcinomas'. Nature Genetics .
Flanagan, SE,Xie, WJ,Caswell, R,Damhuis, A,Vianey-Saban, C,Akcay, T,Darendeliler,
F,Bas, F,Guven, A,Siklar, Z,Ocal, G,Berberoglu, M,Murphy, N,O'Sullivan, M,Green,
A,Clayton, PE,Banerjee, I,Clayton, PT,Hussain, K,Weedon, MN,Ellard, S (2013) 'Next-
Generation Sequencing Reveals Deep Intronic Cryptic ABCC8 and HADH Splicing
Founder Mutations Causing Hyperinsulinism by Pseudoexon Activation'. American
Journal of Human Genetics, 92 :131-136.
Dr Jana Haase
Malynn, S,Campos-Torres, A,Moynagh, P,Haase, J (2013) 'The Pro-inflammatory
Cytokine TNF-alpha Regulates the Activity and Expression of the Serotonin Transporter
(SERT) in Astrocytes'. Neurochemical Research, 38 :694-704.
Dr Chandralal Hewage
Hewage CM, Venneti KC (2013) 'Structural aspects of gut peptides with therapeutic
potential for type 2 diabetes'. Chemmedchem, 8 (4):560-567.
Kenny, O., Smyth, T. J., Hewage, C. M., Brunton, N. P (2013) 'Antioxidant properties
and quantitative UPLC-MS analysis of phenolic compounds from extracts of fenugreek
(Trigonella foenum-graecum) seeds and bitter melon (Momordica charantia) fruit'. Food
Chemistry, 141 (4):4295-4302.
Professor Desmond Gerard Higgins
Hughes G.M., Gang L., Murphy W.J., Higgins D.G., Teeling E.C. (2013) 'Using
Illumina Next Generation Sequencing Technologies to Sequence Multigene Families in
de novo Species'. Molecular Ecology Resources, 13 (3):510-512.
Sievers, F,Dineen, D,Wilm, A,Higgins, DG (2013) 'Making automated multiple
alignments of very large numbers of protein sequences'. Bioinformatics, 29 :989-995.
Mulrane L, Madden SF, Brennan DJ, Gremel G, McGee SF, McNally S, Martin F,
Crown JP, Jirstr�m K, Higgins DG, Gallagher WM, O'Connor DP (2012) 'miR-187 Is
an Independent Prognostic Factor in Breast Cancer and Confers Increased Invasive
Potential In Vitro'. Clinical Cancer Research .
Professor Suzi Jarvis
Forman, CJ,Wang, N,Yang, ZY,Mowat, CG,Jarvis, S,Durkan, C,Barker, PD (2013)
'Probing the location of displayed cytochrome b(562) on amyloid by scanning tunnelling
microscopy'. Nanotechnology, 24 .
Dr Breand�n Kennedy
Collery RF, Cederlund ML, Kennedy BN (2013) 'Transgenic zebrafish expressing
mutant human RETGC-1 exhibit aberrant cone and rod morphology'. Experimental Eye
Research .
Jun Yin1, Lisa Shine2, Francis Raycroft3, Sudhakar Deeti2, Alison Reynolds2, Kristin
M. Ackerman3, Antonino Glaviano2, Sean O'Farrell2, Olivia O'Leary2, Claire Kilty2,
Ciaran Kennedy2, Sarah McLoughlin2, Megan Rice2, Eileen Russell2, Desmond G.
Higgins1, David R. Hyde3 & Breandan N. Kennedy2* (2012) 'INHIBITION OF THE
PIM1 ONCOGENE RESULTS IN DIMINISHED VISUAL FUNCTION'. PLoS ONE .
Professor Boris Kholodenko
Volinsky N, Kholodenko BN (2013) 'Complexity of receptor tyrosine kinase signal
processing'. Cold Spring Harbor perspectives in biology, 5 (8).
Nguyen LK, Kolch W, Kholodenko BN (2013) 'When ubiquitination meets
phosphorylation: a systems biology perspective of EGFR/MAPK signalling'. Cell
communication and signaling : CCS, 11 .
Santra T, Kolch W, Kholodenko BN (2013) 'Integrating Bayesian variable selection with
Modular Response Analysis to infer biochemical network topology'. BMC systems
biology, 7 .
Reiterer V, Fey D, Kolch W, Kholodenko BN, Farhan H (2013) 'Pseudophosphatase
STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of
ERK1/2'. Proceedings of the National Academy of Sciences of the United States of
America, 110 (31):1-43.
Baljuls A, Kholodenko BN, Kolch W. (2013) 'It takes two to tango--signalling by
dimeric Raf kinases'. Molecular BioSystems .
Nguyen LK, Cavadas MA, Scholz CC, Fitzpatrick SF, Bruning U, Cummins EP,
Tambuwala MM, Manresa MC, Kholodenko BN, Taylor CT, Cheong A (2013) 'A
dynamic model of the hypoxia-inducible factor 1-alpha (HIF-1a) network'. Journal of
Cell Science .
Birtwistle MR, Kriegsheim Av, Dobrzy�ski M, Kholodenko BN, Kolch W (2012)
'Mammalian protein expression noise: scaling principles and the implications for
knockdown experiments'. Molecular BioSystems, 8 (11):3068-3076.
Professor Therese Kinsella
Birrane G, Mulvaney EP, Pal R, Kinsella BT, Kocher O. (2013) 'Molecular analysis of
the prostacyclin receptor's interaction with the PDZ1 domain of its adaptor protein
PDZK1'. PLoS ONE, 8 (2).
Turner EC, Kinsella BT. (2012) 'Regulation of the Human Prostacyclin Receptor Gene
by the Cholesterol-responsive Sterol Response Element Binding Protein (SREBP) 1'.
Journal of lipid research, 53 (11):2390-2402.
Professor Ulla Knaus
Hayes, P; Knaus, UK (2012) 'Balancing ROS in the epigenome: NADPH oxidases as
target and perpetrator'. Antioxidants & Redox Signaling .
Professor Walter Kolch
Santra, T., Kolch, W., Kholodenko, B. N. (2013) 'Integrating Bayesian variable selection
with Modular Response Analysis to infer biochemical network topology'. BMC Syst
Biol, 7 .
Nguyen, L. K., Kolch, W., Kholodenko, B. N. (2013) 'When ubiquitination meets
phosphorylation: a systems biology perspective of EGFR/MAPK signalling'. Cell
Commun Signal, 11 .
Reiterer, V., Fey, D., Kolch, W., Kholodenko, B. N., Farhan, H. (2013)
'Pseudophosphatase STYX modulates cell-fate decisions and cell migration by
spatiotemporal regulation of ERK1/2'. Proc Natl Acad Sci U S A, 110 (31).
Baljuls A, Kholodenko BN, Kolch W (2013) 'It takes two to tango--signalling by
dimeric Raf kinases'. Molecular BioSystems, 9 (4):551-558.
Preisinger, C., Schwarz, J. P., Bleijerveld, O. B., Corradini, E., Muller, P. J., Anderson,
K. I., Kolch, W., Scholten, A., Heck, A. J. (2013) 'Imatinib-dependent tyrosine
phosphorylation profiling of Bcr-Abl-positive chronic myeloid leukemia cells'.
Leukemia, 27 (3):743-6.
Rauch, J., Kolch, W., Laurent, S., Mahmoudi, M. (2013) 'Big Signals from Small
Particles: Regulation of Cell Signaling Pathways by Nanoparticles'. Chem Rev .
Doyle, B,Hagan, S,Al-Mulla, F,Scott, L,Harden, S,Paul, J,Mulcahy, H,Murray,
GI,Sheahan, K,O'Sullivan, J,Kolch, W (2013) 'Raf kinase inhibitor protein expression
combined with peritoneal involvement and lymphovascular invasion predicts prognosis
in Dukes' B colorectal cancer patients'. Histopathology, 62 :505-510.
Romano, D,Maccario, H,Doherty, C,Quinn, NP,Kolch, W,Matallanas, D (2013) 'The
Differential Effects of Wild-Type and Mutated K-Ras on MST2 Signaling Are
Determined by K-Ras Activation Kinetics'. Molecular and Cellular Biology, 33 :1859-
1868.
Brown, KM,Day, JP,Huston, E,Zimmermann, B,Hampel, K,Christian, F,Romano,
D,Terhzaz, S,Lee, LCY,Willis, MJ,Morton, DB,Beavo, JA,Shimizu-Albergine,
M,Davies, SA,Kolch, W,Houslay, MD,Baillie, GS (2013) 'Phosphodiesterase-8A binds
to and regulates Raf-1 kinase'. Proceedings of the National Academy of Sciences of the
United States of America, 110 :1533-1542.
Birtwistle MR, Kriegsheim Av, Dobrzy�ski M, Kholodenko BN, Kolch W (2012)
'Mammalian protein expression noise: scaling principles and the implications for
knockdown experiments'. Molecular BioSystems, 8 (11):3068-3076.
Professor Carel Le Roux
Neff, KJH,le Roux, CW (2013) 'Bariatric surgery: a best practice article'. J Clin Pathol,
66 :90-98.
Seyfried, F,Li, JV,Miras, AD,Cluny, NL,Lannoo, M,Fenske, WK,Sharkey,
KA,Nicholson, JK,le Roux, CW,Holmes, E (2013) 'Urinary Phenotyping Indicates
Weight Loss-Independent Metabolic Effects of Roux-en-Y Gastric Bypass in Mice'.
Journal of Proteome Research, 12 :1245-1253.
Iesari, S,le Roux, CW,De Gaetano, A,Manco, M,Nanni, G,Mingrone, G (2013) 'Twenty-
Four Hour Energy Expenditure and Skeletal Muscle Gene Expression Changes After
Bariatric Surgery'. Journal Of Clinical Endocrinology & Metabolism, 98 :321-327.
Papamargaritis, D,le Roux, CW,Sioka, E,Koukoulis, G,Tzovaras, G,Zacharoulis, D
(2013) 'Changes in gut hormone profile and glucose homeostasis after laparoscopic
sleeve gastrectomy'. Surgery For Obesity And Related Diseases, 9 :192-201.
Professor Gil Lee
Fields C, O'Connell D, Xiao S, Lee GU, Billiald P, Muzard J (2013) 'Creation of
recombinant antigen-binding molecules derived from hybridomas secreting specific
antibodies'. Nature protocols, 8 (6):1125-1148.
J.J. O'Mahony, M. Platt, D. Kilinc, and G. Lee (2013) 'Synthesis of Superparamagnetic
Particles with Tunable Morphologies: The Role of Nanoparticle-Nanoparticle
Interaction'. Langmuir : the ACS journal of surfaces and colloids, 29 :2546-2553.
Y. Zhang, Q. Wang, B. Ashall, D. Zerulla, and G.U Lee (2013) 'Magnetic-Plasmonic
Dual Modulated FePt-Au Ternary Heterostructured Nanorods as a Promising Nano-
Bioprobe'. Advanced Materials, 25 :502-502.
Devrim Kilinc and Gil Lee (2013) 'Advances in Magnetic Tweezers for Single Molecule
and Cell Biophysics'. Integrative Biology .
Zhang, Y, Ashall, B, Doyle, G, Zerulla, D and Lee, GU (2012) 'Highly Ordered Fe−Au
Heterostructured Nanorod Arrays and Their Exceptional Near-Infrared Plasmonic
Signature'. Langmuir .
Kilinc, D, Blasiak, A, O'Mahony, JJ, Suter, DM, and Lee, GU (2012) 'Magnetic
Tweezers-Based Force Clamp Reveals Mechanically Distinct apCAM Domain
Interactions'. Biophysical Journal, 103 (6):1120-1129.
Professor Brendan Loftus
�Maoil�idigh DS, Wuest SE, Rae L, Raganelli A, Ryan PT, Kwasniewska K, Das P,
Lohan AJ, Loftus B, Graciet E, Wellmer F (2013) 'Control of reproductive floral organ
identity specification in Arabidopsis by the C function regulator AGAMOUS'. Plant
Cell .
Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K.
M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley,
E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA
sequence analysis of the bovine macrophage response to Mycobacterium bovis infection
in vitro'. BMC Genomics, 14 (1).
Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T,
Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B,
Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB,
Aseffa A. (2013) 'Mycobacterial lineages causing pulmonary and extrapulmonary
tuberculosis, Ethiopia'. Emerging Infectious Diseases .
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C,
Kianianmomeni A, Burglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C,
Paponov I, Finkler A, Soon Heng Tan C, Hutchins AP, Weinmeier T, Rattei T, Chu JS,
Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu
CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen
N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus B (2013) 'Genome of
Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution
of tyrosine kinase signaling'. Genome Biology .
Martin-Navarro, CM,Lorenzo-Morales, J,Machin, RP,Lopez-Arencibia, A,Garcia-
Castellano, JM,de Fuentes, I,Loftus, B,Maciver, SK,Valladares, B,Pineroa, JE (2013)
'Inhibition of 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase and Application of
Statins as a Novel Effective Therapeutic Approach against Acanthamoeba Infections'.
Antimicrobial Agents and Chemotherapy, 57 :375-381.
Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-
Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon,
SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence
analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'.
BMC Genomics, 14 .
Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ,
Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ,
Cagney G, Bracken AP (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2
and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature
structural & molecular biology .
Professor Patrick Lonergan
Forde N, Mehta JP, McGettigan PA, Mamo S, Bazer FW, Spencer TE, Lonergan P
(2013) 'Alterations in expression of endometrial genes coding for proteins secreted into
the uterine lumen during conceptus elongation in cattle'. Genomics, 14 .
Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The
Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'.
Reproduction in domestic animals = Zuchthygiene, 48 :888-892.
Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013)
'Predictive value of bovine follicular components as markers of oocyte developmental
potential'. Reproduction, fertility, and development .
Maillo V, Duffy P, O'Hara L, de Frutos C, Kelly AK, Lonergan P, Rizos D (2013)
'Effect of hCG administration during corpus luteum establishment on subsequent corpus
luteum development and circulating progesterone concentrations in beef heifers'.
Reproduction, fertility, and development .
Mossa, F,Carter, F,Walsh, SW,Kenny, DA,Smith, GW,Ireland, JLH,Hildebrandt,
TB,Lonergan, P,Ireland, JJ,Evans, ACO (2013) 'Maternal Undernutrition in Cows
Impairs Ovarian and Cardiovascular Systems in Their Offspring'. Biology of
Reproduction, 88 .
Spencer TE, Forde N, Dorniak P, Hansen TR, Romero JJ, Lonergan P (2013)
'Conceptus-derived prostaglandins regulate gene expression in the endometrium prior to
pregnancy recognition in ruminants'. Reproduction (Cambridge, England), 146 (4):377-
387.
Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012)
'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of
Reproduction, 87 (5):124, 1-11.
Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A,
Waters SM, Machugh DE, Spillane C (2012) 'PHLDA2 is an imprinted gene in cattle'.
Animal Genetics, 43 (5):587-590.
Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter,
F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an
imprinted gene in cattle'. Animal Genetics, 43 (5):587-590.
Beltman ME, Forde N, Lonergan P, Crowe MA. (2012) 'Altered endometrial immune
gene expression in beef heifers with retarded embryos'. Reproduction Fertility and
Development .
Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass
dry matter intake and fat supplementation on progesterone metabolism in lactating dairy
cows'. Theriogenology, 78 (4):878-886.
Forde N, Carter F, di Francesco S, Prakash Mehta J, Garcia-Herreros M, Gad AY,
Tesfaye D, Hoelker M, Schellander K, Lonergan P (2012) 'Endometrial response of beef
heifers on Day 7 following insemination to supra-physiological concentrations of
progesterone associated with superovulation'. Genomics .
Mamo S, Rizos D, Lonergan P (2012) 'Transcriptomic changes in the bovine conceptus
between the blastocyst stage and initiation of implantation'. Animal Reproduction
Science, 134 (1-2):56-63.
Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia
N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012)
'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon
and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.
Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan,
FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development
in beef heifers'. Animal Reproduction Science, 133 (3):139-145.
Professor David MacHugh
Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro,
B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S.,
Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the
tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on
chromosomes 3 and 10'. Anim Genet, 44 (4):408-12.
Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K.
M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley,
E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA
sequence analysis of the bovine macrophage response to Mycobacterium bovis infection
in vitro'. BMC Genomics, 14 (1).
B McGivney, J Browne, R Fonseca, D MacHugh, R Whiston, L Katz, E Hill ; (2012)
'MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression
and racetrack performance'. Animal Genetics, 43 (6).
Hill, Emmeline W., Ryan, Donal P., MacHugh, David E. (2012) 'Horses for Courses: a
DNA-based Test for Race Distance Aptitude in Thoroughbred Racehorses'. Recent
patents on DNA & gene sequences, 6 (3):203-8.
Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter,
F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an
imprinted gene in cattle'. Animal Genetics, 43 (5):587-590.
Waters, Sinead M., Coyne, Gerard S., Kenny, David A., MacHugh, David E., Morris,
Dermot G. (2012) 'Dietary n-3 polyunsaturated fatty acid supplementation alters the
expression of genes involved in the control of fertility in the bovine uterine
endometrium'. Physiological Genomics, 44 (18):878-888.
Dr Patricia Maguire
Macaulay IC, Thon JN, Tijssen MR, Steele BM, MacDonald BT, Meade G, Burns P,
Rendon A, Salunkhe V, Murphy RP, Bennett C, Watkins NA, He X, Fitzgerald DJ,
Italiano JE Jr, Maguire PB (2013) 'Canonical Wnt signaling in megakaryocytes regulates
proplatelet formation'. Blood, 121 (1):188-196.
Professor Jonathan Malthouse
Howe N, Ceruso M, Spink E, Malthouse JP; (2012) 'pH stability of the stromelysin-1
catalytic domain and its mechanism of interaction with a glyoxal inhibitor'. Biochimica
et biophysica acta, 1814 (10):1394-1403.
Professor Finian Martin
Corcoran JB, McCarthy S, Griffin B, Gaffney A, Bhreathnach U, Börgeson E, Hickey
FB, Docherty NG, Higgins DF, Furlong F, Martin F, Godson C, Murphy M (2013)
'IHG-1 must be localised to mitochondria to decrease Smad7 expression and amplify
TGF-β1-induced fibrotic responses'. Biochimica et biophysica acta, 1833 (8):1969-1978.
Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP.,
Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin
related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics .
Brennan EP, Nolan KA, Börgeson E, Gough OS, McEvoy CM, Docherty NG, Higgins
DF, Murphy M, Sadlier DM, Ali-Shah ST, Guiry PJ, Savage DA, Maxwell AP, Martin
F, Godson C (2013) 'Lipoxins attenuate renal fibrosis by inducing let-7c and suppressing
TGFβR1'. Journal of the American Society of Nephrology, 24 (4):627-637.
Brennan, EP,Nolan, KA,Borgeson, E,Gough, OS,McEvoy, CM,Docherty, NG,Higgins,
DF,Murphy, M,Sadlier, DM,Ali-Shah, ST,Guiry, PJ,Savage, DA,Maxwell, AP,Martin,
F,Godson, C (2013) 'Lipoxins Attenuate Renal Fibrosis by Inducing let-7c and
Suppressing TGF beta R1'. J AM SOC NEPHROL, 24 :627-637.
Professor Fionnuala McAuliffe
Ciara A. McGowan, Fionnuala M. McAuliffe (2012) 'Maternal dietary patterns and
associated nutrient intakes during each trimester of pregnancy'. Public Health Nutrition .
Daniel Dowling, Fionnuala McAuliffe (2012) 'The molecular mechanisms of offspring
effects from diabetic and obese pregnancy'. Obesity Facts .
Higgins MF, Brazil D, Foley M, McAuliffe FM (2012) 'Maternal and fetal leptin in type
1 and type 2 diabetic pregnancies'. International journal of gynaecology and obstetrics:
the official organ of the International Federation of Gynaecology and Obstetrics .
Walsh C, Robson M, McAuliffe FM (2012) 'Operative delivery and adverse outcome'.
Obstetrics & Gynecology .
Treacy A, Higgins M, Kearney JM, McAuliffe FM, Mooney EE (2012) 'Delayed villous
maturation of the placenta, quantitative assessment in different cohorts'. Pediatric And
Developmental Pathology .
Daniel Dowling, Niamh Corrigan, Paul Downey, Fionnuala McAuliffe (2012)
'Inflammatory protein expression in adolescent and adult offspring of type 1 diabetic
mothers'. Birth Defects Res A Clin Mol Teratol .
Nicola Maher, Fionnuala McAuliffe, Michael Foley (2012) 'The benefit of early
treatment without rescreening in women with a history of gestational diabetes'. The
journal of maternal-fetal & neonatal medicine : the official journal of the European
Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal
Societies, the International Society of Perinatal Obstetricians .
Martina Wallace, Evelyn Cottell, Michael J Gibney, Fionnuala M McAuliffe, Mary
Wingfield, Lorraine Brennan (2012) 'Prediction of oocyte developmental potential and
pregnancy outcome using metabolomics biomarkers'. Fertility and Sterility .
Niamh Corrigan, Ann Treacy, Derek P. Brazil, Fionnuala M. McAuliffe (2012)
'Cardiomyopathy and diastolic dysfunction in the embryo and neonate of a type 1
diabetic mouse model'. Reproductive Sciences .
Ciara A. McGowan, Sinead Curran, Fionnuala M. McAuliffe (2012) 'Relative validity of
a food frequency questionnaire to assess nutrient intake during pregnancy'. Maternal &
Child Nutrition .
Jennifer M Walsh, Mark Kilbane, Ciara A McGowan, Malachi J McKenna, Fionnuala M
McAuliffe (2012) 'Pregnancy in dark winters: Implications for fetal bone growth?'.
Fertility and Sterility .
Mark P Hehir, Henriette Laursen, Mary F Higgins, Donal J Brennan, Darran P
O'Connor, Fionnuala M McAuliffe (2012) '. Ghrelin concentrations in maternal and cord
blood of Type 1 diabetic and non-diabetic pregnancies at term'. Endocrine .
Unterscheider J, Geary MP, Daly S, McAuliffe FM, Kennelly MM, Dornan J, Morrison
JJ, Burke G, Francis A, Gardosi J, Malone FD. (2012) 'The customized fetal growth
potential: a standard for Ireland'. Eur J Obstet Gynecol Reprod Biol .
Jennifer M Walsh, Ciara A McGowan, Mark Kilbane, Malachi J McKenna, Fionnuala M
McAuliffe (2012) 'Vitamin D, glucose homeostasis and fetal growth, a complex
relationship'. Reproductive Sciences .
Dr Amanda McCann
Aliu, E,Archambault, S,Arlen, T,Aune, T,Beilicke, M,Benbow, W,Bouvier, A,Buckley,
JH,Bugaev, V,Cesarini, A,Ciupik, L,Collins-Hughes, E,Connolly, MP,Cui,
W,Dickherber, R,Duke, C,Dumm, J,Dwarkadas, VV,Errando, M,Falcone, A,Federici,
S,Feng, Q,Finley, JP,Finnegan, G,Fortson, L,Furniss, A,Galante, N,Gall, D,Gillanders,
GH,Godambe, S,Gotthelf, EV,Griffin, S,Grube, J,Gyuk, G,Hanna, D,Holder, J,Hughes,
G,Humensky, TB,Kaaret, P,Kargaltsev, O,Karlsson, N,Khassen, Y,Kieda,
D,Krawczynski, H,Krennrich, F,Lang, MJ,Lee, K,Madhavan, AS,Maier, G,Majumdar,
P,McArthur, S,McCann, A,Moriarty, P,Mukherjee, R,Nelson, T,de Bhroithe, AO,Ong,
RA,Orr, M,Otte, AN,Park, N,Perkins, JS,Pohl, M,Prokoph, H,Quinn, J,Ragan, K,Reyes,
LC,Reynolds, PT,Roache, E,Roberts, M,Saxon, DB,Schroedter, M,Sembroski,
GH,Slane, P,Smith, (2013) 'DISCOVERY OF TeV GAMMA-RAY EMISSION FROM
CTA 1 BY VERITAS'. The Astrophysical Journal, 764 .
Zhou, ZM,McCann, A,Litrup, E,Murphy, R,Cormican, M,Fanning, S,Brown,
D,Guttman, DS,Brisse, S,Achtman, M (2013) 'Neutral Genomic Microevolution of a
Recently Emerged Pathogen, Salmonella enterica Serovar Agona'. PLoS Genetics, 9 .
Dr Margaret McGee
O'Donovan DS, MacFhearraigh S, Whitfield J, Swigart LB, Evan GI, Mc Gee MM
(2013) 'Sequential Cdk1 and Plk1 phosphorylation of protein tyrosine phosphatase 1B
promotes mitotic cell death'. Cell Death & Disease .
Dr Fiona McGillicuddy
Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the
role of macrophage migration inhibitory factor in obesity and insulin resistance'. The
Proceedings of the Nutrition Society, 71 (4):622-633.
Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P,
Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB
Journal, 26 (10):4287-4294.
Oliver, E., McGillicuddy, F. C., Harford, K. A., Reynolds, C. M., Phillips, C. M.,
Ferguson, J. F., Roche, H. M. (2012) 'Docosahexaenoic acid attenuates macrophage-
induced inflammation and improves insulin sensitivity in adipocytes-specific differential
effects between LC n-3 PUFA'. J Nutr Biochem, 23 (9):1192-200.
Professor Paul McLoughlin
Lili Li*, Katherine Howell*, Michelle Sands, Mark Banahan, Stephen Frohlich, Simon
C Rowan, Rois�n Neary, Donal Ryan, Paul McLoughlin (2013) 'The α and Δ isoforms
of CREB1 are required to maintain normal pulmonary vascular resistance'. PLoS ONE .
McLoughlin P, Ward JP (2013) 'Hypoxic pulmonary hypertension; the load on the right
ventricle'. Experimental Physiology, 98 (8):1244-1246.
Fr�hlich S, Boylan J, McLoughlin P (2013) 'Hypoxia-induced inflammation in the
lung: a potential therapeutic target in acute lung injury?'. American Journal of
Respiratory Cell and Molecular Biology, 48 (3):271-279.
Dr Tara McMorrow
H. Cassidy, J.Slyne, H. Frain, C. Slattery , M.P. Ryan, T. McMorrow * (2013) 'High-
Throughput Proteomic Approaches to the Elucidation of Potential'. Proteome science, 1
(2):159-179.
Sumayao R, McEvoy B, Martin-Martin N, McMorrow T, Newsholme P. (2013) 'Cystine
dimethylester loading promotes oxidative stress and a reduction in ATP independent of
lysosomal cystine accumulation in a human proximal tubular epithelial cell line'.
Experimental Physiology, 98 (10):1505-1517.
Radford R, Frain H, Ryan MP, Slattery C, McMorrow T. (2013) 'Mechanisms of
chemical carcinogenesis in the kidneys'. International journal of molecular sciences, 14
(10):19416-19433.
Limonciel A, Wilmes A, Aschauer L, Radford R, Bloch KM, McMorrow T, Pfaller W,
van Delft JH, Slattery C, Ryan MP, Lock EA, Jennings P. (2012) 'Oxidative stress
induced by potassium bromate exposure results in altered tight junction protein
expression in renal proximal tubule cells'. Archives of Toxicology, 86 (11):1741-1751.
Professor Walter McNicholas
Zaffaroni A, Kent B, O'Hare E, Heneghan C, Boyle P, O'Connell G, Pallin M, de Chazal
P, McNicholas WT. (2013) 'Assessment of sleep-disordered breathing using a non-
contact bio-motion sensor'. Journal of Sleep Research, 22 :231-236.
Levy P, McNicholas WT. (2013) 'Sleep apnoea and hypertension: time for
recommendations'. European Respiratory Journal, 41 :505-506.
Parati G, Lombardi C, Hedner J, Bonsignore MR, Grote L, Tkacova R, L�vy P, Riha
R, Bassetti C, Narkiewicz K, Mancia G, McNicholas WT; EU COST Action B26
members. (2013) 'Recommendations for the management of patients with obstructive
sleep apnoea and hypertension'. European Respiratory Journal, 41 :523-538.
McSharry DG, Ryan S, Calverley P, Edwards JC, McNicholas WT. Respirology. 2012
Oct;17(7):1119-24. (2012) 'Sleep quality in chronic obstructive pulmonary disease'.
Respirology (Carlton, Vic.), 17 :1119-1124.
Professor Wim Meijer
Liu, L; Tharmalingam, T; Maischberger, E; Miranda CasoLuengo, R; Meijer, WG;
Rudd, PM; Irwin, JA (2013) 'A HPLC-based glycoanalytical protocol allows the use of
natural O-glycans derived from glycoproteins as substrates for glycosidase discovery
from microbial culture'. Glycoconjugate journal, 30 (8):791-800.
Sinigalliano, C.D., J. Erven, L.C. van de Werfhorst, B. Badgley, E. Balleste, J.
Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon, J. Griffith,
P.A. Holden, J. Jay, B. Layton, C. Lee, J. Lee, W.G. Meijer, R. Noble, M. Raith, H.
Ryu, M/J. Sadowsky, A. Schriewer, D. Wanless, R. Whitman, S. Wuertz, J.W. Santo
Domingo (2013) 'Multi-laboratory evaluations of the performance of Catellicoccus
marimammalium PCR assays developed to target gull fecal sources'. Water Research, 47
(18):6883-6896.
Schriewer, A; Goodwin, KD; Sinigalliano, CD; Cox, A; Wanless, D; Bartkowiak, J;
Ebentier, DL; Hanley, KT; Ervin, J; Deering, LA; Shanks, OC; Peed, LA; Meijer, WG;
Griffith, JF; SantoDomingo, J; Jay, JA; Holden, PA; Wuertz, S (2013) 'Performance
evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison
study'. Water Research, 47 (18):6909-6920.
Raith, MR; Kelty, CA; Griffith, JF; Schriewer, A; Wuertz, S; Mieszkin, S; Gourmelon,
M; Reischer, GH; Farnleitner, AH; Ervin, JS; Holden, PA; Ebentier, DL; Jay, JA; Wang,
D; Boehm, AB; Aw, TG; Rose, JB; Balleste, E; Meijer, WG; Sivaganesan, M; Shanks,
O (2013) 'Comparison of PCR and quantitative real-time PCR methods for the
characterization of ruminant and cattle fecal pollution sources'. Water Research, 47
(18):6921-6928.
Layton, BA; Cao, Y; Ebentier, DL; Hanley, K; Ballest�, E; Brand�o, J;
Byappanahalli, M; Converse, R; Farnleitner, AH; Gentry-Shields, J; Gidley, ML;
Gourmelon, M; Lee, CS; Lee, J; Lozach, S; Madi, T; Meijer, WG; Noble, R; Peed, L;
Reischer, GH; Rodrigues, R; Rose, JB; Schriewer, A; Sinigalliano, C; Srinivasan, S;
Stewart, J; Van De Werfhorst, LC; Wang, D; Whitman, R; Wuertz, S; Jay, J; Holden,
PA; Boehm, AB; Shanks, O; Griffith, JF (2013) 'Performance of human fecal anaerobe-
associated PCR-based assays in a multi-laboratory method evaluation study'. Water
Research, 47 (18):6897-6908.
Cauchard, S; Gigu�re, S; Venner, M; Muscatello, G; Cauchard, J; Cohen, ND; Haas,
A; Hines, SA; Hondalus, MK; Horohov, DW; Meijer, WG; Prescott, JF; V�zquez-
Boland, J (2013) 'Rhodococcus equi research 2008-2012: Report of the Fifth
International Havemeyer Workshop'. Equine Veterinary Journal, 45 :523-526.
Maischberger, E; Cummins, CA; Fitzpatrick, E; Gallagher, ME; Worrall, S;Rousseau,
K; Thornton, DJ; Meijer, WG; Miranda-CasoLuengo, R; Duggan, VE;Carrington, SD;
Irwin, JA; Reid, CJ (2013) ''The expression of mucin genes and the presence of mucin
gene products in the equine endometrium''. Research in Veterinary Science, 95 (1):169-
175.
Miranda-CasoLuengo AA, Miranda-CasoLuengo R, Lieggi NT, Luo H, Simpson JC,
Meijer WG (2013) 'A real-time impedance based method to assess Rhodococcus equi
virulence'. PLoS ONE, 8 (3).
Miranda-CasoLuengo, R., G. Coulson, A. Miranda-CasoLuengo, J.A. Vazquez-Boland,
M.K. Hondalus and W.G. Meijer (2012) 'The hydroxamate siderophore rhequichelin is
required for virulence of the pathogenic actinomycete Rhodococcus equi'. Infection and
Immunity, 80 (12):4106-4114.
Professor Grace V T Mulcahy
Stuart P., Golden O., Zintl A., DeWaal, T. Mulcahy G., McCarthy E., Lawton C. (2013)
'A coprological survey of parasites of wild carnivores in Ireland'. Parasitology Research,
112 :3587-3593.
Halova, D,Mulcahy, G,Rafter, P,Turcekova, L,Grant, T,de Waal, T (2013) 'Toxoplasma
gondii in Ireland: Seroprevalence and Novel Molecular Detection Method in Sheep,
Pigs, Deer and Chickens'. Zoonoses and Public Health, 60 :168-173.
Stuart, P,Zintl, A,De Waal, T,Mulcahy, G,Hawkins, C,Lawton, C (2013) 'Investigating
the role of wild carnivores in the epidemiology of bovine neosporosis'. Parasitology,
140 :296-302.
Dr Evelyn Murphy
JP McMorrow, D Crean, M Gogarty, A Smyth, M Connolly, E Cummins, D Veale, U
Fearon, PP Tak, O Fitzgerald, and EP Murphy (2013) 'Tumour Necrosis Factor
inhibition modulates Thrombospondin-1 expression in human inflammatory joint
disease through altered NR4A2 activity'. American Journal of Pathology, 183 (4):1243-
1257.
Ryan SM, McMorrow J, Umerska A, Patel HB, Kornerup KN, Tajber L, Murphy EP,
Perretti M, Corrigan OI, Brayden DJ (2013) 'An intra-articular salmon calcitonin-based
nanocomplex reduces experimental inflammatory arthritis'. Journal of controlled release
: official journal of the Controlled Release Society, 167 (2):120-129.
Dr Keith Murphy
Murphy RP, Murphy KJ, Pickering M (2013) 'The development of myelin repair agents
for treatment of multiple sclerosis: Progress and challenges'. Bioengineered, 4 (3):140-
146.
Borlikova GG, Trejo M, Mably AJ, Mc Donald JM, Frigerio CS, Regan CM, Murphy
KJ, Masliah E, Walsh DM (2013) 'Alzheimer brain-derived amyloid beta-protein
impairs synaptic remodeling and memory consolidation'. Neurobiology of Aging, 34
(5):1315-1327.
Lukasz B, O'Sullivan NC, Loscher JS, Pickering M, Regan CM, Murphy KJ (2013)
'Peripubertal viral-like challenge and social isolation mediate overlapping but distinct
effects on behaviour and brain interferon regulatory factor 7 expression in the adult
Wistar rat'. Brain, behavior, and immunity, 27 (1):71-79.
Dr Jarlath Nally
Jorge Gutierrez, James O'Donovan, Aisling Proctor, Colm Brady, Patricia X. Marques,
Sheila Worrall, Jarlath E. Nally, Maire McElroy, Hugh Bassett, John Fagan, Stephen
Maley, David Buxton, Donal Sammin, Bryan K. Markey (2012) 'Application of
quantitative real-time polymerase chain reaction for the diagnosis of toxoplasmosis and
enzootic abortion of ewes'. Journal of veterinary diagnostic investigation : official
publication of the American Association of Veterinary Laboratory Diagnosticians, Inc,
24 (5):845-853.
Dr Jens Erik Nielsen
Farrell D, Nielsen JE (2012) 'DataPipeline: Automated importing and fitting of large
amounts of biophysical data'. Journal of Computational Chemistry, 33 (29):2357-2362.
Dr Peter O'Brien
S Papakonstantinou, I Berzina, A Lawlor, EJ O'Neill, PJ O'Brien (2013) 'Rapid,
effective and user-friendly immunophenotyping of canine lymphoma using a personal
flow cytometer'. The Irish Veterinary Journal, 66 :1-14.
Silvestrini, P; Piviani, M; Alberola, J; Rodr�guez‐Cort�s, A; Planellas, M; Roura, X;
O'Brien, PJ; Pastor, J (2012) 'Serum cardiac troponin I concentrations in dogs with
leishmaniasis: correlation with age and clinicopathologic abnormalities'. Veterinary
Clinical Pathology, 41 :568-574.
Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden
D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial
permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50
(11):4097-4102.
Koutinas CK, Mylonakis ME, O'Brien PJ, Leontides L, Siarkou VI, Breitschwerdt EB,
Koutinas AF (2012) 'Serum cardiac troponin I concentrations in naturally occurring
myelosuppressive and non-myelosuppressive canine monocytic ehrlichiosis'. Veterinary
Journal, 194 (2):259-261.
Professor Ronan O'Connell
Beyond TME Collaborative (2013) 'Consensus statement on the multidisciplinary
management of patients with recurrent and primary rectal cancer beyond total
mesorectal excision planes'. The British journal of surgery, 100 (8):1009-1014.
Rogers AC, Gibbons D, Hanly AM, Hyland JM, O'Connell PR, Winter DC, Sheahan K
(2013) 'Prognostic significance of tumor budding in rectal cancer biopsies before
neoadjuvant therapy'. Modern Pathology .
Hanly AM, Ryan EM, Rogers AC, McNamara DA, Madoff RD, Winter DC; on behalf
of the MERRION Study Group. (2013) 'Multicenter Evaluation of Rectal cancer
ReImaging pOst Neoadjuvant (MERRION) Therapy'. Annals of Surgery .
Burke JP, Doherty GA, O'Connell PR (2013) 'A survey of current practices used to
maintain surgically induced remission following intestinal resection for Crohn's disease'.
Colorectal disease : the official journal of the Association of Coloproctology of Great
Britain and Ireland .
Burke JP, Doherty GA, O'Connell PR (2013) 'A survey of current practices used to
maintain surgically induced remission following intestinal resection for Crohn's disease'.
International Journal of Colorectal Disease, 28 (8):1073-1079.
Kavanagh DO, Carter MC, Keegan D, Doherty G, Smith MJ, Hyland JM, Mulcahy H,
Sheahan K, O' Connell PR, O' Donoghue DP, Winter DC (2013) 'Management of
colorectal cancer in patients with inflammatory bowel disease'. Techniques in
coloproctology .
Evers, J,Buffini, M,Craven, S,O'Connell, PR,Jones, JFX (2013) 'Is there a nitrergic
modulation of the rat external anal sphincter?'. Experimental Physiology, 98 :397-404.
Kavanagh, DO,Nolan, B,Judge, C,Hyland, JMP,Mulcahy, HE,O'Connell, PR,Winter,
DC,Doherty, GA (2013) 'A Comparative Study of Short- and Medium-term Outcomes
Comparing Emergent Surgery and Stenting as a Bridge to Surgery in Patients With
Acute Malignant Colonic Obstruction'. Diseases Of The Colon & Rectum, 56 :433-440.
O'Connell PR. (2013) 'Sacral nerve stimulation for constipation'. The British journal of
surgery, 100 (2):181-181.
Kennelly RP, Rogers AC, Winter DC; Abdominoperineal Excision Study Group. (2013)
'Multicentre study of circumferential margin positivity and outcomes following
abdominoperineal excision for rectal cancer'. The British journal of surgery, 100
(1):160-166.
Larkin JO, O'Connell PR (2012) 'Multivisceral resection for T4 or recurrent colorectal
cancer'. Digestive Diseases, 30 (Supp 2):96-101.
Dr John O'Connor
Corcoran, A., OConnor J.J. (2013) 'Hypoxia inducible factor signaling mechanisms in
the central nervous system'. Acta Physiologica Scandinavica, 208 (4):298-310.
O'Connor JJ (2013) 'Targeting TNF-α in hypoxia and synaptic signaling'. Irish Journal
of Medical Science, 182 (2):157-162.
Fanning RA, McMorrow JP, Campion DP, Carey MF, O'Connor JJ (2012) 'Opioid
mediated activity and expression of mu and delta opioid receptors in isolated human
term non-laboring myometrium'. European Journal of Pharmacology, 689 (1-3):170-
177.
Dr Kevin O'Connor
Narancic T, Radivojevic J, Jovanovic P, Francuski D, Bigovic M, Maslak V, Savic V,
Vasiljevic B, O'Connor KE, Nikodinovic-Runic J (2013) 'Highly efficient Michael-type
addition of acetaldehyde to β-nitrostyrenes by whole resting cells of Escherichia coli
expressing 4-oxalocrotonate tautomerase'. Bioresource Technology, 142 :462-468.
Molloy S, Nikodinovic-Runic J, Martin LB, Hartmann H, Solano F, Decker H,
O'Connor KE. (2013) 'Engineering of a bacterial tyrosinase for improved catalytic
efficiency towards D-tyrosine using random and site directed mutagenesis approaches'.
Biotechnology and Bioengineering, 110 (7):1848-1857.
Brooks SJ, Nikodinovic J, Martin L, Doyle EM, O'Sullivan T, Guiry PJ, Coulombel L,
Li Z, O'Connor KE. (2013) 'Production of a chiral alcohol, 1-(3,4-dihydroxyphenyl)
ethanol, by mushroom tyrosinase'. Biotechnology Letters, 35 (5):779-783.
O'Connor S, Szwej E, Nikodinovic-Runic J, O'Connor A, Byrne AT, Devocelle M,
O'Donovan N, Gallagher WM, Babu R, Kenny ST, Zinn M, Zulian QR, O'Connor KE
(2013) 'The anti-cancer activity of a cationic anti-microbial peptide derived from
monomers of polyhydroxyalkanoate'. Biomaterials, 34 (11):2710-2718.
Babu RP, O'Connor K, Seeram R. (2013) 'Current progress on bio-based polymers and
their future trends'. Progress in Biomaterials, 2 (8).
Nikodinovic-Runic J, Guzik M, Kenny ST, Babu R, Werker A, O Connor KE (2013)
'Carbon-rich wastes as feedstocks for biodegradable polymer (polyhydroxyalkanoate)
production using bacteria'. Advances In Applied Microbiology, Vol 62, 84 :139-200.
Professor Stefan Oscarson
Matei, E,Andre, S,Glinschert, A,Infantino, AS,Oscarson, S,Gabius, HJ,Gronenborn, AM
(2013) 'Fluorinated Carbohydrates as Lectin Ligands: Dissecting Glycan-Cyanovirin
Interactions by Using F-19 NMR Spectroscopy'. Chemistry-A European Journal, 19
:5364-5374.
Dr Francesca Paradisi
Alsafadi, D; Paradisi, F (2013) 'Covalent immobilization of alcohol dehydrogenase
(ADH2) from Haloferax volcanii: how to maximize activity and optimize performance
of halophilic enzymes'. Molecular Biotechnology .
Quaglia, D; Pori, M; Galletti, P; Emer, E; Paradisi, F; Giacomini, D (2013) 'His-tagged
Horse Liver Alcohol Dehydrogenase: Immobilization and application in the bio-based
enantioselective synthesis of (S)-arylpropanols'. Process Biochemistry, 48 :810-818.
O'Reilly, E; Pes, L; Ortin, Y; M�ller-Bunz, H; Paradisi, F (2013) 'Synthesis of a
conformationally constrained delta-amino acid building block'. Amino Acids, 44 :511-
518.
Timpson, L; Liliensiek, A; Alsafadi, D; Sharkey, MA; Liddell, S; Allers, T; Paradisi, F
(2013) 'A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2)
from the extreme halophile Haloferax volcanii'. Applied Microbiology and
Biotechnology, 97 :195-203.
Alsafadi, D; Paradisi, F (2013) 'Effect of organic solvents on the activity and stability of
halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii'. Extremophiles, 17
:115-122.
Hackenberg, F; Lally, G; M�ller-Bunz, H; Paradisi, F; Quaglia, D; Streciwilk, W;
Tacke, M (2013) 'Synthesis and biological evaluation of N-heterocyclic carbene-silver(I)
acetate complexes derived from 4,5-ditolyl-imidazole'. Inorganica Chimica Acta, 395
:135-144.
Quaglia, D; Irwin, JA; Paradisi, F (2012) 'Horse Liver Alcohol Dehydrogenase: new
perspectives for an old enzyme'. Molecular Biotechnology, 52 :244-250.
Sharkey, MA; O'Gara, JP; Gordon, SV; Hackenberg, F; Healy, C; Paradisi, F; Patil, S;
Schaible, B; Tacke, M (2012) 'Investigations into the Antibacterial Activity of the
Silver-Based Antibiotic Drug Candidate SBC3'. Antibiotics, 1 :25-28.
Hackenberg, F; Lally, G; M�ller-Bunz, H; Paradisi, F; Quaglia, D; Streciwilk, W;
Tacke, M (2012) 'Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-
heterocyclic carbene-silver(I) acetate complexes - synthesis and biological evaluation'.
Journal of Organometallic Chemistry, 717 :123-134.
Balducci, D; Conway, PA; Sapuppo, G; M�ller-Bunz, H; Paradisi, F (2012) 'Novel
approach to the synthesis of aliphatic and aromatic alpha-keto acids'. Tetrahedron, 68
:7374-7379.
Dr Andrew Phillips
Dominique F. Schreiber, Crystal O'Connor, Christian Grave, Yannick Ortin, Helge
M�ller-Bunz, and Andrew D. Phillips (2012) 'Application of β-Diketiminato Arene-
Substituted Ru(II) Complexes in Highly Efficient H2 Dehydrocoupling of Amine
Boranes'. Applied Catalysis, 2 :2505-2511.
Professor Ron Pinhasi
von Cramon-Taubadel, N; Stock, JT; Pinhasi, R (2013) 'Skull and limb morphology
differentially track population history and environmental factors in the transition to
agriculture in Europe'. Proceedings of the Royal Society, Series B, doi:
10.1098/rspb.2013.1337 .
Ottoni C, Flink LG, Evin A, Ge�rg C, Cupere BD, Van Neer W, Bartosiewicz L,
Linderholm A, Barnett R, Peters J, Ronny Decorte, R, Waelkens M, Vanderheyden N,
Ricaut F-X, Hoelzel AR, Mashkour M, Karimlu AFM, Seno S, Daujat J, Brock F,
Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens F-J. Crooijmans
R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney
K, Larson G (2013) 'Pig domestication and human-mediated dispersal in western
Eurasia revealed through ancient DNA and geometric morphometrics'. Molecular
Biology and Evolution .
Pinhasi, R; Nioradze, M; Tushabramishvilli, N; Lordkipanidze, D; Pleurdeau, D;
Moncel, M-H; Adler, DS; Stringer, S; Higham, TFG (2012) 'New chronology for the
Middle Palaeolithic of the Southern Caucasus suggests early demise of Neanderthals in
this region'. Journal of Human Evolution, Early View .
Moncel, M-H; Pleurdeau, D; Tushubramishvili, N; Yeshurun, R; Agapishvili, T;Pinhasi,
R; Higham, T (2012) 'Preliminary results from the new excavations of the Middle and
Upper Palaeolithic levels at Ortvale Klde-North Chamber (South Caucasus Georgia)'.
Quaternary International, Early View .
Professor Ciaran Regan
Ring RM, Regan CM (2013) 'Captodiamine, a putative antidepressant, enhances
hypothalamic BDNF expression in vivo by synergistic 5-HT2c receptor antagonism and
sigma-1 receptor agonism'. Journal of psychopharmacology (Oxford, England) .
Lukasz B, O'Sullivan NC, Loscher JS, Pickering M, Regan CM, Murphy KJ (2013)
'Peripubertal viral-like challenge and social isolation mediate overlapping but distinct
effects on behaviour and brain interferon regulatory factor 7 expression in the adult
Wistar rat'. Brain, behavior, and immunity, 27 (1):71-79.
Borlikova GG, Trejo M, Mably AJ, Mc Donald JM, Frigerio CS, Regan CM, Murphy
KJ, Masliah E, Walsh DM (2013) (2013) 'Alzheimer brain-derived amyloid β-protein
impairs synaptic remodeling and memory consolidation'. Neurobiology of Aging, 34
:1315-1327.
Foley AF, Gannon S, Rombach-Mullan N, Prendergast A, Barry C, Cassidy AW, Regan
CM (2012) 'Class I histone deacetylase inhibition ameliorates social cognition and cell
adhesion molecule plasticity deficits in a rodent model of autism spectrum disorders'.
Neuropharmacology .
Professor Helen Roche
Phillips CM, Tierney AC, Perez-Martinez P, Defoort C, Blaak EE, Gjelstad IM, Lopez-
Miranda J, Kiec-Klimczak M, Malczewska-Malec M, Drevon CA, Hall W, Lovegrove
JA, Karlstrom B, Ris�rus U, Roche HM. (2013) 'Obesity and Body Fat Classification
in the Metabolic Syndrome: Impact on Cardiometabolic Risk Metabotype'. Obesity, .
Camargo A, Rangel-Z��iga OA, Pe�a-Orihuela P, Mar�n C, P�rez-Mart�nez P,
Delgado-Lista J, Gutierrez-Mariscal FM, Malag�n MM, Roche HM, Tinahones FJ,
Lopez-Miranda J. (2013) 'Postprandial changes in the proteome are modulated by
dietary fat in patients with metabolic syndrome'. Journal of Nutritional Biochemistry, 24
:318-324.
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L
(2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy
adults'. Molecular Nutrition and Food Research .
Perez-Martinez P, Garcia-Rios A, Delgado-Lista J, Gjelstad IM, Gibney J, Kieć-Wilk B,
Camargo A, Helal O, Karlstr�m B, Blaak EE, Hall W, Ris�rus U, Dembińska-Kieć A,
Defoort C, Saris WH, Lovegrove JA, Drevon CA, Roche HM, Lopez-Miranda J. (2013)
'Gene-nutrient interactions on the phosphoenolpyruvate carboxykinase influence insulin
sensitivity in metabolic syndrome subjects'. Clinical Nutrition, Aug;32(4):630-5 :630-
635.
Camargo A, Meneses ME, Perez-Martinez P, Delgado-Lista J, Jimenez-Gomez Y, Cruz-
Teno C, Tinahones FJ, Paniagua JA, Perez-Jimenez F, Roche HM, Malagon MM,
Lopez-Miranda J (2013) 'Dietary fat differentially influences the lipids storage on the
adipose tissue in metabolic syndrome patients'. The Journal of nutrition .
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013)
'Identification of differential responses to an oral glucose tolerance test in healthy
adults'. PLoS ONE, 8 (8).
McAllan L, Keane D, Schellekens H, Roche HM, Korpela R, Cryan JF, Nilaweera KN.
(2013) 'Whey protein isolate counteracts the effects of a high-fat diet on energy intake
and hypothalamic and adipose tissue expression of energy balance-related genes'. British
Journal of Nutrition, 4 :1-13.
Yubero-Serrano EM, Delgado-Lista J, Peña-Orihuela P, Perez-Martinez P, Fuentes F,
Marin C, Tunez I, Tinahones FJ, Perez-Jimenez F, Roche HM, Lopez-Miranda J (2013)
'Oxidative stress is associated with the number of components of metabolic syndrome:
LIPGENE study'. Experimental & molecular medicine, 45 .
Morine MJ, Toomey S, McGillicuddy FC, Reynolds CM, Power KA, Browne JA,
Loscher C, Mills KH, Roche HM. (2013) 'Network analysis of adipose tissue gene
expression highlights altered metabolic and regulatory transcriptomic activity in high-
fat-diet-fed IL-1RI knockout mice'. Journal of Nutritional Biochemistry, 24 :788-799.
Phelan, N,O'Connor, A,Tun, TK,Correia, N,Boran, G,Roche, HM,Gibney, J (2013)
'Leucocytosis in women with polycystic ovary syndrome (PCOS) is incompletely
explained by obesity and insulin resistance'. Clinical Endocrinology, 78 :107-113.
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan,
L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic
response of healthy adults'. American Journal of Clinical Nutrition, 97 :261-267.
Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney,
AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic
health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24 :401-411.
McArdle MA, Finucane OM, Connaughton RM, McMorrow AM, Roche HM (2013)
'Mechanisms of obesity-induced inflammation and insulin resistance: insights into the
emerging role of nutritional strategies'. Frontiers in endocrinology, 4 .
Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the
role of macrophage migration inhibitory factor in obesity and insulin resistance'. The
Proceedings of the Nutrition Society, 71 (4):622-633.
Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F.,
Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose
inflammation'. FASEB J, 26 (10):4287-94.
Allott EH, Oliver E, Lysaght J, Gray SG, Reynolds JV, Roche HM, Pidgeon GP (2012)
'The SGBS cell strain as a model for the in vitro study of obesity and cancer'. Clinical &
translational oncology : official publication of the Federation of Spanish Oncology
Societies and of the National Cancer Institute of Mexico, 14 (10):774-782.
Oliver E, McGillicuddy FC, Harford KA, Reynolds CM, Phillips CM, Ferguson JF,
Roche HM (2012) 'Docosahexaenoic acid attenuates macrophage-induced inflammation
and improves insulin sensitivity in adipocytes-specific differential effects between LC n-
3 PUFA'. The Journal of nutrition, 23 (9):1192-1200.
Dr Noreen Sheehy
McCabe A, Hashimoto K, Hall WW, Sheehy N. (2013) 'The Four and a Half LIM
family are novel interactants of the HTLV-1 oncoprotein Tax1'. Journal of Virology, 87
(13).
Marban,C;Bukong,TN;Hall,WW; Sheehy,N (2012) 'Interplay between the HTLV-2 Tax
and APH-2 proteins in the regulation of the AP-1 pathway'. Retrovirology, 9:98. doi:
10.1186/1742-4690-9-98 .
Professor Denis Shields
O'Brien, K. T., Haslam, N. J., Shields, D. C. (2013) 'SLiMScape: a protein short linear
motif analysis plugin for Cytoscape'. BMC Bioinformatics, 14 .
Pushker, R., Mooney, C., Davey, N. E., Jacque, J. M., Shields, D. C. (2013) 'Marked
variability in the extent of protein disorder within and between viral families'. PLoS
One, 8 (4).
Khan, W., Duffy, F., Pollastri, G., Shields, D. C., Mooney, C. (2013) 'Predicting binding
within disordered protein regions to structurally characterised peptide-binding domains'.
PLoS One, 8 (9).
Mooney, C., Cessieux, A., Shields, D. C., Pollastri, G. (2013) 'SCL-Epred: a generalised
de novo eukaryotic protein subcellular localisation predictor'. Amino Acids, 45 (2):291-
9.
O'Brien, R. P., Phelan, P. J., Conroy, J., O'Kelly, P., Green, A., Keogan, M., O'Neill, D.,
Jennings, S., Traynor, C., Casey, J., McCormack, M., Conroy, R., Chubb, A., Ennis, S.,
Shields, D. C., Cavalleri, G. L., Conlon, P. J. (2013) 'A genome-wide association study
of recipient genotype and medium-term kidney allograft function'. Clin Transplant, 27
(3):379-87.
den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J., Peal, D. S., Evans, D. M.,
Nolte, I. M., Segre, A. V., Holm, H., Handsaker, R. E., Westra, H. J., Johnson, T.,
Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P.,
Bochud, M., Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst,
P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J.
P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T.,
O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T.,
Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H., Feitosa,
M. F., Kerr, K. F., Lind, P. A., Mihailov, E., Onland-Moret, N. C., Song, C., Weedon,
M. N., Xie, W., Yengo, L. (2013) 'Identification of heart rate-associated loci and their
effects on cardiac conduction and rhythm disorders'. Nat Genet, 45 (6):621-31.
Mooney, C., Haslam, N. J., Holton, T. A., Pollastri, G., Shields, D. C. (2013)
'PeptideLocator: prediction of bioactive peptides in protein sequences'. Bioinformatics,
29 (9):1120-6.
Vijayakumar, V., Guerrero, A. N., Davey, N., Lebrilla, C. B., Shields, D. C., Khaldi, N.
(2012) 'EnzymePredictor: a tool for predicting and visualizing enzymatic cleavages of
digested proteins'. J Proteome Res, 11 (12):6056-65.
Davey, N. E., Cowan, J. L., Shields, D. C., Gibson, T. J., Coldwell, M. J., Edwards, R. J.
(2012) 'SLiMPrints: conservation-based discovery of functional motif fingerprints in
intrinsically disordered protein regions'. Nucleic Acids Research, 40 (21):10628-41.
Sudol, M., Shields, D. C., Farooq, A. (2012) 'Structures of YAP protein domains reveal
promising targets for development of new cancer drugs'. Seminars in Cell and
Developmental Biology, 23 (7):827-33.
Haslam, N. J., Shields, D. C. (2012) 'Peptide-binding domains: are limp handshakes
safest?'. Sci Signal, 5 (243).
Professor Jeremy Simpson
Bexiga MG, Kelly C, Dawson KA, Simpson JC (2013) 'RNA interference-mediated
inhibition of apoptosis fails to prevent cationic nanoparticle-induced cell death in
cultured cells'. Nanomedicine, in press .
Stadler C, Rexhepaj E, Singan, VR, Murphy RF, Pepperkok R, Uhlen M, Simpson JC,
Lundberg E (2013) 'Immunofluorescence and fluorescent-protein tagging show high
correlation for protein localization in mammalian cells'. Nature Methods, 10 :315-323.
Miranda-CasoLuengo AA, Miranda-CasoLuengo R, Lieggi NT, Luo H, Simpson JC,
Meijer WG (2013) 'A real-time impedance based method to assess Rhodococcus equi
virulence'. PLoS ONE, 8 (3).
McCarthy JM, Franke M, Resenberger UK, Waldron S, Simpson JC, Tatzelt J,
Appelhans D, Rogers MS (2013) 'Anti-prion drug mPPIg5 inhibits PrPC conversion to
PrPSc'. PLoS ONE, 8 (1).
Singan VR, Handzic K, Simpson JC (2012) 'Quantitative image analysis approaches for
probing Rab GTPase localization and function in mammalian cells'. Biochemical Society
Transactions, 40 (6):1389-1393.
Yi P, Higa A, Taouji S, Bexiga MG, Marza E, Arma D, Castain C, Le Bail B, Simpson
JC, Rosenbaum J, Balabaud C, Bioulac-Sage P, Blanc JF, Chevet E (2012) 'Sorafenib-
Mediated Targeting of the AAA+ ATPase p97/VCP Leads to Disruption of the
Secretory Pathway, Endoplasmic Reticulum Stress, and Hepatocellular Cancer Cell
Death'. Molecular Cancer Therapeutics, 11 :2610-2620.
Roth SD, Sch�ttrumpf J, Milanov P, Abriss D, Ungerer C, Quade-Lyssy P, Simpson
JC, Pepperkok R, Seifried E, Tonn T. (2012) 'Chemical Chaperones Improve Protein
Secretion and Rescue Mutant Factor VIII in Mice with Hemophilia A'. PLoS ONE, 7 (9).
Varela JA, Bexiga MG, Aberg C, Simpson JC, Dawson KA (2012) 'Quantifying size-
dependent interactions between fluorescently labeled polystyrene nanoparticles and
mammalian cells'. Journal Of Nanobiotechnology, 10 (1):39.1-39.6.
Dr Albert Smolenski
Tilley DO, Arman M, Smolenski A, Cox D, O'Donnell JS, Douglas CW, Watson SP,
Kerrigan SW (2013) 'Glycoprotein Iba and FcgRIIa play key roles in platelet activation
by the colonizing bacterium, Streptococcus oralis'. Journal of Thrombosis and
Haemostasis, 11 (5):941-950.
Hampson A, O'Connor A, Smolenski A (2013) 'Synaptotagmin-like protein 4 and rab8
interact and increase dense granule release in platelets'. Journal of Thrombosis and
Haemostasis, 11 :161-168.
Dr Matthias Tacke
Walther, W; Fichtner, I; Deally, A; Hogan, M; Tacke, M (2013) 'The Activity of
Titanocene T Against Xenografted CAKI-1 Tumors'. Letters in Drug Design &
Discovery, 10 (5):375-381.
Schur, J; Manna, CM; Deally, A; K�ster, R; Tacke, M; Tshuva, EY; Ott, I (2013) 'A
Comparative Chemical-Biological Evaluation of Titanium(IV) Complexes with Salan or
Cyclopentadienyl Ligands'. Journal of the Chemical Society-Chemical Communications,
49 :4785-4787.
F. Hackenberg, G. Lally, H. M�ller-Bunz, F. Paradisi, D. Quaglia, W. Streciwilk, M.
Tacke (2013) 'Synthesis and biological evaluation of N-heterocyclic carbene-silver(I)
acetate complexes derived from 4,5-ditolyl-imidazole'. Inorganica Chimica Acta, 395
:135-144.
M. A. Sharkey, J. P. O'Gara, S. V. Gordon, F. Hackenberg, C. Healy, F. Paradisi, S.
Patil, B. Schaible, M. Tacke (2012) 'Investigations into the Antibacterial Activity of the
Silver-Based Antibotic Drug Candidate SBC3'. Antibiotics, 1 :25-28.
F. Hackenberg, G. Lally, H. M�ller-Bunz, F. Paradisi, D. Quaglia, W. Streciwilk, M.
Tacke (2012) 'Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-
heterocyclic carbene-silver(I) acetate complexes, synthesis and biological evaluation'.
Journal of Organometallic Chemistry, 717 :123-134.
I. Fichtner, D. Behrens, J. Cinatl jr., M. Michaelis, L. C. Sanders, R. Hilger, B. N.
Kennedy, A. L. Reynolds, F. Hackenberg, G. Lally, Susan Quinn, I. McRae, M. Tacke
(2012) 'In Vitro and In Vivo Investigations into the Carbene Silver Acetate Anticancer
Drug Candidate SBC1'. Letters in Drug Design & Discovery, 9 (9):815-822.
A. Deally, F. Hackenberg, G. Lally, H. M�ller-Bunz, M. Tacke; (2012) 'Synthesis and
preliminary cytotoxicity studies of achiral silyl-substituted titanocene dichloride
derivatives'. Organometallics, 31 (16):5782-5790.
U. Olszewski, A. Deally, M. Tacke, G. Hamilton (2012) 'Alterations of Phosphoproteins
in NCI-H526 Small Cell Lung Cancer Cells involved in Cytotoxicity of Cisplatin and
Titanocene Y'. Neoplasia, 14 (9):813-822.
Professor Cormac Taylor
Nguyen LK, Cavadas MA, Scholz CC, Fitzpatrick SF, Bruning U, Cummins EP,
Tambuwala MM, Manresa MC, Kholodenko BN, Taylor CT, Cheong A (2013) 'A
dynamic model of the hypoxia-inducible factor 1-alpha (HIF-1a) network'. Journal of
Cell Science .
Lenihan, CR,Taylor, CT (2013) 'The impact of hypoxia on cell death pathways'.
Biochemical Society Transactions, 41 :657-663.
Cummins, EP,Doherty, GA,Taylor, CT (2013) 'Hydroxylases as therapeutic targets in
inflammatory bowel disease'. LAB INVEST, 93 :378-383.
Schaible, B,McClean, S,Selfridge, A,Broquet, A,Asehnoune, K,Taylor, CT,Schaffer, K
(2013) 'Hypoxia Modulates Infection of Epithelial Cells by Pseudomonas aeruginosa'.
PLoS ONE, 8 .
Tannahill, GM,Curtis, AM,Adamik, J,Palsson-McDermott, EM,McGettrick, AF,Goel,
G,Frezza, C,Bernard, NJ,Kelly, B,Foley, NH,Zheng, L,Gardet, A,Tong, Z,Jany,
SS,Corr, SC,Haneklaus, M,Caffrey, BE,Pierce, K,Walmsley, S,Beasley, FC,Cummins,
E,Nizet, V,Whyte, M,Taylor, CT,Lin, H,Masters, SL,Gottlieb, E,Kelly, VP,Clish,
C,Auron, PE,Xavier, RJ,O'Neill, LAJ (2013) 'Succinate is an inflammatory signal that
induces IL-1 beta through HIF-1 alpha'. Nature, 496 .
Professor Emma C Teeling
Hughes G.M., Gang L., Murphy W.J., Higgins D.G., Teeling E.C. (2013) 'Using
Illumina Next Generation Sequencing Technologies to Sequence Multigene Families in
de novo Species'. Molecular Ecology Resources, 13 (3):510-512.
J. Kirwan, M. Bekaert, J. M. Commins, K. T. J. Davies, S. J. Rossiter, E. C. Teeling
(2013) 'A Phylomedicine Approach to Understanding the Evolution of Auditory Sensory
Perception and Disease in Mammals'. Evolutionary Applications, 6 (3):412-422.
Lundy M.G., Harrison A., Buckley D.J., Boston E.S., Scott D.D., Teeling
E.C.,Montgomery W.I., Houghton J.D.R. (2013) 'Prey field switching based on
preferential behaviour can induce Levy flights'. Journal of the Royal Society, Interface /
the Royal Society, 10 (78).
S. J. Puechmaille & E. C. Teeling (2013) 'Non-invasive genetics can help find rare
species: a case study with Rhinolophus mehelyi (Rhinolophidae: Chiroptera)'.
Mammalia .
G. Jones, E. C. Teeling, S. J. Rossiter (2013) 'From the ultrasonic to the infrared:
molecular evolution and the sensory biology of bats'. Frontiers in Integrative
Physiology, 4 .
S. E. Dool, S. J. Puechmaille, C. Dietz, J. Juste, C. Ib��ez, P. Hulva, S. G. Rou�, E.
J. Petit, G. Jones, S. J. Rossiter, E. C. Teeling (2013) 'Phylogeography and postglacial
recolonisation of Europe by Rhinolophus hipposideros: evidence from multiple genetic
markers'. Molecular Ecology, 22 (15):4055-4070.
D. D. Scott, S. Fitzpatrick, D. A. Bailie, E. S. M. Boston, M. G. Lundy, D. J. Buckley,
E. C. Teeling, W. I. Montgomery, P. A. Prod�hl (2013) 'Isolation and characterization
of eight polymorphic microsatellite loci for Natterer's bat, Myotis nattereri
(Vespertilionidae, Chiroptera)'. Conservation Genetics Resources, 5 :643-645.
Springer, M.S, Meredith, R.B., Teeling, E.C., Murphy, W.J. (2013) 'Technical Comment
on The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals'. Science,
9 :613-603.
E.C. Teeling, S.B. Hedges (2013) 'Making the impossible possible: rooting the tree of
placental mammals'. Molecular Biology and Evolution, 30 (9):1999-2000.
Lundy, M.G.,Harrison, A., Buckley, D.J., Boston, E.S., Scott, D.D., Teeling, E.C.,
Montgomery, W.I., Houghton, J.D.R. (2012) 'Prey field switching based on preferential
behaviour can induce Levy flights'. Proceedings of the Royal Society B - Biological
Sciences .
Goodman, S.M., Puechmaille, S., Friedli-Weyeneth, N., Gerlach, J., Ruedi, M.,
Schoeman, C., Stanley, W.T. and Teeling, E.C. (2012) 'Phylogeny of the Emballonurini
bats (Family Emballonuridae): new genus of Emballonura and species of Coleura'.
Journal of Mammalogy, 93 (6):1440-1455.
D. J. Buckley, M. G. Lundy, E. S. M. Boston, D. D. Scott, Y. Gager, P. Prodohl, F.
Marnell, W. I. Montgomery, E. C. Teeling (2012) 'The spatial ecology of the whiskered
bat (Myotis mystacinus) at the western extreme of its range provides evidence of
regional adaptation'. Mammalian Biology, 78 (3):198-204.
Dr Douglas Veale
Collins, E.S., Galligan, M.C., Saldova, R., Adamczyk, B., Abrahams, J.L., Campbell,
M.P., Ng, C.T., Veale, D.J., Murphy, T.B., Rudd, P.M., FitzGerald, O. (2013)
'Glycosylation Status of Serum in Inflammatory Arthritis in Response to Anti-TNF
Treatment'. Rheumatology, 52 (9):1572-1582.
Professor Matthias Wilm
Hannes Hahne, Fiona Pachl, Benjamin Ruprecht,Stefan K Maier, Susan Klaeger,
Dominic Helm, Guillaume M�dard , Matthias Wilm , Simone Lemeer, Bernhard Kuster
(2013) 'DMSO enhances electrospray response, boosting sensitivity of proteomic
experiments'. Nature Methods, 10 (10):989-991.
Dr Xiangming Zhu
Raymond Smith, Xiaojun Zeng, Helge Muller-Bunz, Xiangming Zhu (2013) 'Synthesis
of glycosyl disulfides containing an α-glycosidic linkage'. Tetrahedron Letters, 54
:5348-5350.
X. Zeng, R. Smith, X. Zhu (2013) 'Synthesis of thioglycoside analogues of maradolipid'.
Journal of Organic Chemistry, 78 :4165-4170.
N. Murphy, A. Petrasca, N. M. Murphy, V. O'Reilly, P. Evans, D. G. Doherty, X. Zhu
(2013) 'Synthesis and immunostimulatory activity of two α-S-galactosyl phenyl-capped
ceramides'. Arkivoc, 2013 :363-377.
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Other Journals
Professor Mohamed Al-Rubeai
Al-Rubeai M. and Kuystermans D. (2013) 'Valuing the future: Recent advances and
future directions in cell line development' Pharmaceutical Bioprocessing, 1 (3):243-247.
Professor Andrew Green
J. M. Darlow, M. G. Dobson, R. Darlay, C. M. Molony, M. Hunziker, A. J. Green, H. J.
Cordell, P. Puri & D. E. Barton (2013) 'A new genome scan for primary nonsyndromic
vesicoureteric reflux emphasizes high genetic' Molecular Genetics and Genomic
Medicine .
O'Brien RP, Phelan PJ, Conroy J, O'Kelly P, Green A, Keogan M, O'Neill D, Jennings
S, Traynor C, Casey J, McCormack M, Conroy R, Chubb A, Ennis S, Shields DC,
Cavalleri GL, Conlon PJ (2013) 'A genome-wide association study of recipient genotype
and medium-term kidney allograft function' clinical transplantation .
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Conference Publications
Professor Mohamed Al-Rubeai
Al-Majmaie R., Alattar N., Kennedy E., Al-Rubeai M., Rice J., Zerulla D. (2013)
Raman spectroscopy for intracellular localisation of meso-tetraphenylporphyrin-gold
nanoparticles conjugates SPIE 8815, Nanoimaging and Nanospectroscopy,
Dr John Crean
Kavanagh, D., Gaffney A., Murphy, M., Faherty, N., Andrews, D., Higgins, D., McKay,
G., Maxwell, P., Godson, C. and Crean, J. (2012) Wnt 6 is increased in diabetic
nephropathy and modulates de novo tubulogenesis and opposes TGFbeta mediated
epithelial cell differentiation in vitro American Society of Nephrology,
Dr Giuliano Elia
Gegenbauer, K; Elia,G; Blanco-Fernandez, A; Smolenski, A (2012) RGS18 integrates
activatory and inhibitory signalling in platelets First European Platelet Network
Conference,
Professor Catherine Godson
Kavanagh, D., Gaffney A., Murphy, M., Faherty, N., Andrews, D., Higgins, D., McKay,
G., Maxwell, P., Godson, C. and Crean, J. (2012) Wnt 6 is increased in diabetic
nephropathy and modulates de novo tubulogenesis and opposes TGFbeta mediated
epithelial cell differentiation in vitro American Society of Nephrology,
Dr Amanda McCann
Ivers, L; Cummings, BK; McCann, A; Itasaki, N (2013) The effect of microenvironment
on breast cancer cells cultured in 3D matrix Irish Association for Cancer Research
Annual Meeting,
Professor Wim Meijer
Garcia, M.S., Carvalho, D., Zlydareva, O., Muldoon, C., Masterson, B.F., O'Grady,
M.F., Meijer, W.G., O'Sullivan, J.J., O'Hare, G,M.P. (2012) An Agent-Based Wireless
Sensor Network for Water Quality Data Collection . In: J. Bravo, D. Lopez-de-Ipina, F.
Moya eds. 6th International Conference Ubiquitous Computing and Ambient
Intelligence (UCAmI), Vitoria-Gasteiz, Spain, 454 - 461
Sanchez, M.; O'Hare, G.M.P.; O'Grady, M.J.; Carvalho, D.; Zlydareva, O.; Muldoon, C.;
Meijer, W.; O'Sullivan, J.; O'Keefe, B. (2012) An Agent-based Wireless Sensor
Network for Water Quality Data Collection 6th International Conference on Ubiquitous
Computing & Ambient Intelligence (UCAmI 2012), Vitoria-Gasteiz, Spain, 454 - 461
Bedri,Z., O'Sullivan, J.J., Corkery, A., Deering, L., Demeter, K., Meijer, W. G., O'Hare,
G. and Masterson, B. (2012) Real-time Prediction System of Bathing Water Quality at
Bray, Co. Wicklow, Ireland New Developments in IT & Water, Amsterdam,
Dr Keith Murphy
Murphy RP, Keogh EA, O'Shea SD, Bowen G, Pickering M, Murphy KJ (2013) The
nootropic agent nefiracetam is a potential remyelinating therapeutic in vivo XI European
Meeting on Glial Cells in Health and Disease, S134
O'Shea SD, Keogh EA, Murphy RP, Bowen G, Pickering M, Murphy KJ (2013)
Exploring the mechanism of action of the novel remyelinating therapeutic nefiracetam
XI European Meeting on Glial Cells in Health and Disease, S135
Sheridan GK, Pickering M, Watters O, Halley PG, O'Sullivan NC, Mooney C, O'Connor
JJ, Murphy KJ (2012) CX3CL1 is up-regulated in the rat hippocampus during memory-
associated synaptic plasticity Society for Neuroscience Annual Meeting 2012,
Wdowicz A, Gleize JJ, Bowen G, Murphy KJ, O'Connell DJ (2012) The calcium
binding protein secretagogin is expressed in discrete cell populations in the adult rat
brain and exhibits age-associated regulation Society for Neuroscience Annual Meeting
2012,
Dr Jarlath Nally
O'Donovan J., Gutierrez J., Williams E., Proctor A., Worrall S., Marques P., Brady C.,
McElroy M., Maley S., Nally J., Buxton D., Sammin D., Bassett H. and Markey B.
(2013) Comparative aspects of placental pathology and immunopathology in ewes
challenged with Chlamydophila abortus or Toxoplasma gondii Second European
Meeting on Animal Chlamydioses and Zoonotic Implications, Jena, Germany,
Dr John O'Connor
A. Wall, A.E. Corcoran, K. O'Halloran, J.J. O' Connor (2013) Effects of chronic
intermittent hypoxia and prolyl-hydroxylase inibition on synaptic transmission and
plasticity in the rat ca1 and dentate gyrus Section of Biomedical Sciences, RAMI, UCC,
Cork,
H. Nolan, A.E. Corcoran, J.J. O'Connor (2013) The effects of hypoxia-mimetic drugs on
synaptic transmission and synaptic plasticity in the dentate gyrus in vitro Section of
Biomedical Sciences, RAMI, UCC, Cork,
C. Leyden, R.A. Fanning, D.P. Campion, J.J. OConnor (2013) A novel role for
adrenergic and serotonergic signaling in the action of ergometrine in isolated term
human myometrium Section of Biomedical Sciences, RAMI, UCC, Cork,
Alan E. Corcoran, John J. OConnor (2013) Acute hypoxic pre-conditioning and prolyl-
hydroxylase inibition improves synaptic transmission recovery time from a subsequent
hypoxic insult in the rat hippocampus Section of Biomedical Sciences, RAMI, UCC,
Cork,
Luke M. Alvey, John J. OConnor (2013) Novel interactions of succinate,
lipopolysaccharide and hypoxia on synaptic transmission in the rat hippocampus in vitro
Section of Biomedical Sciences, RAMI, UCC, Cork,
Dr Albert Smolenski
Gegenbauer, K; Elia,G; Blanco-Fernandez, A; Smolenski, A (2012) RGS18 integrates
activatory and inhibitory signalling in platelets First European Platelet Network
Conference,
Hampson, A; Smolenski, A (2012) Synaptotagmin-like protein 4 regulates platelet
granule secretion First European Platelet Network Conference,
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Published Reports
Professor Mohamed Al-Rubeai
Al-Rubeai (2013) Quality Assurance of Iraqi Engineering Colleges. UNESCO, Amman. Back to Top
Other Publications
Professor Alan Baird
Rogers, AC,Collins, D,Mohan, HM,Baird, AW,Winter, DC (2013) Bacterial-produced
polyamines interfere with the colonic mucus barrier. Abstract.
Rogers, AC,Collins, D,Quinn, N,Mohan, HM,Baird, AW,Winter, DC (2013) Bacterial-
produced polyamines allow bacterial colonisation of the colonic mucus barrier.
Abstract.
Dr Lorraine Brennan
Lindsay, KL,Walsh, CA,Brennan, L,McAuliffe, FM (2013) Probiotics in pregnancy and
maternal outcomes: a systematic review. Reviews.
Professor Sean Callanan
Callanan JJ (2012) Pathology, a path well worn. Editorial.
Professor Catherine Godson
Murphy, M,Hickey, F,Godson, C (2013) IHG-1 amplifies TGF-beta 1 signalling and
mitochondrial biogenesis and is increased in diabetic kidney disease. Reviews.
Dr Breand�n Kennedy
Moriarity, AR,Murphy, A,Cathcart, M,Kennedy, BN,Murphy, P,McCormick,
PH,O'Sullivan, JN,Mehigan, BJ (2013) Assessing novel small molecule drugs as
potential new therapeutic options to treat colorectal cancer. Abstract.
Professor Carel Le Roux
Neff, KJ,le Roux, CW (2013) Incretins: new targets for the prevention of diabetes and
obesity. Reviews.
Neff, KJ,Olbers, T,le Roux, CW (2013) Bariatric surgery: the challenges with
candidate selection, individualizing treatment and clinical outcomes. Reviews.
Neff, KJ,Prenner, C,Chuah, LL,Godsland, I,le Roux, CW (2013) Bariatric Surgery: A
Holistic Assessment of Outcomes. Abstract.
Professor Patrick Lonergan
Maillo, V,Duffy, P,O'Hara, L,de Frutos, C,Kelly, AK,Lonergan, P,Rizos, D (2013)
EFFECT OF HUMAN CHORIONIC GONADOTROPIN (HCG) ADMINISTRATION
ON DAYS 1, 2, 3, OR 4 POST-OESTRUS ON CORPUS LUTEUM DEVELOPMENT
AND CIRCULATING PROGESTERONE CONCENTRATIONS IN BEEF HEIFERS.
Abstract.
O'Hara, L,Forde, N,Rizos, D,Maillo, V,Ealy, AD,Kelly, AK,Rodriguez, P,Evans,
ACO,Lonergan, P (2013) EFFECT OF SHORT TERM PROGESTERONE
SUPPLEMENTATION ON CIRCULATING PROGESTERONE CONCENTRATION,
CORPUS LUTEUM SIZE, AND EARLY EMBRYO DEVELOPMENT IN CATTLE.
Abstract.
Al Naib, A,Mamo, S,Lonergan, P (2013) INVESTIGATION OF A PREFERENTIALLY
UPREGULATED GENE CLUSTER IN DAY 7 BOVINE EMBRYOS DERIVED FROM
RNA SEQUENCING DATA. Abstract.
Dr Amanda McCann
McEvoy, L,O'Toole, S,Spillane, C,Stordal, B,Gallagher, M,Martin, C,Norris, L,Gleeson,
N,McGoldrick, A,Furlong, F,McCann, A,Sheils, O,O'Leary, J (2013) Novel Hypoxia-
Associated Markers of Chemoresistance in Ovarian Cancer. Abstract.
Professor Ronan O'Connell
Evers, J,Carrington, EV,Scott, SM,Knowles, CH,O'Connell, PR,Jones, JFX (2013)
Comparison of anal evoked potentials elicited by mechanical and electrical stimuli in
anaesthesised rats. Abstract.
O'Connell, PR (2013) Sacral nerve stimulation for constipation (Br J Surg2013; 100:
174-181). Editorial.
Professor Ciaran Regan
Duggan, E,Finucane, C,Cronin, H,O'Regan, C,Savva, G,Loughman, J,Kenny, RA (2013)
VISION, FALLS AND FEAR OF FALLING IN AN OLDER IRISH POPULATION:
FINDINGS FROM THE IRISH LONGITUDINAL STUDY ON AGEING (TILDA).
Abstract.
Professor Helen Roche
McAllan, L,Cotter, PD,Roche, HM,Korpela, R,Nilaweera, KN (2013) Impact of leucine
on energy balance. Reviews.
Professor Cormac Taylor
Scholz, CC,Taylor, CT (2013) Hydroxylase-dependent regulation of the NF-kappa B
pathway. Reviews.
Professor Bill Watson
Flynn, L,Sheils, O,O'Leary, JJ,Finn, SP,Watson, W,Loda, M,Mucci, L (2013) miRNA
Signatures of Indolent and Aggressive Prostate Cancer. Abstract.
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