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PHRINGE Synteny toolhttp://oomycetes.genomeprojectsolutions-databases.com/
[top half of home page]
PhiGS Synteny toolhttp://oomycetes.genomeprojectsolutions-databases.com/
[top half of home page] Entry to browser
source species
for display
gaps in synteny
pixels for display
target species
Units are gene models not sequence length
colored models have orthologs
grey models have no orthologs
Models are color coded by matching scaffold
End position setting controls how many gene models are packed into the display window
Mouse-over scaffold name gives pop-up of scaffold info
Mouse-over gene model gives pop-up of brief gene model info
Click on gene model links todetailed gene model info
Hint: if the gene model bars are too narrow to do this easily, zoom in
Scaffold and coordinates
Protein ID
PhiGs gene number
Clickable link to source database
List of hits in source species and several target species
Hits link to databases
Avr1b
P.sojae and P. ramorum preserve gene order except in the vicinity of virulence genes
P.sojae and P. ramorum preserve gene order except in the vicinity of virulence genes
14
188
100
Avh72
Avh277 (sc 1079)Use of the synteny map to track down Avr1a
Ps v1 Sc55
Pi v1contig1.1
Ha v6 Sc9
Pr v1 Sc1
Pr v1 Sc104
100 149
368 14
683 737
Ps v1Sc137
26 1
1
32
HaRxL23PrAvh388
PsAvh73 PiRxLRdEER_192
Synteny among oomycete genomes
a very few RXLR effectors are syntenic