PHRINGE Synteny toolhttp://oomycetes.genomeprojectsolutions-databases.com/

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PhiGS Synteny toolhttp://oomycetes.genomeprojectsolutions-databases.com/

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source species

for display

gaps in synteny

pixels for display

target species

Units are gene models not sequence length

colored models have orthologs

grey models have no orthologs

Models are color coded by matching scaffold

End position setting controls how many gene models are packed into the display window

Mouse-over scaffold name gives pop-up of scaffold info

Mouse-over gene model gives pop-up of brief gene model info

Click on gene model links todetailed gene model info

Hint: if the gene model bars are too narrow to do this easily, zoom in

Scaffold and coordinates

Protein ID

PhiGs gene number

Clickable link to source database

List of hits in source species and several target species

Hits link to databases

Avr1b

P.sojae and P. ramorum preserve gene order except in the vicinity of virulence genes

P.sojae and P. ramorum preserve gene order except in the vicinity of virulence genes

14

188

100

Avh72

Avh277 (sc 1079)Use of the synteny map to track down Avr1a

Ps v1 Sc55

Pi v1contig1.1

Ha v6 Sc9

Pr v1 Sc1

Pr v1 Sc104

100 149

368 14

683 737

Ps v1Sc137

26 1

1

32

HaRxL23PrAvh388

PsAvh73 PiRxLRdEER_192

Synteny among oomycete genomes

a very few RXLR effectors are syntenic