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The RNA World Tony Z. Jia Earth-Life Science Institute Tokyo Institute of Technology

The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

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Page 1: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The RNAWorldTony Z. JiaEarth-Life Science InstituteTokyo Institute of Technology

Page 2: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

Page 3: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNA

Page 4: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNA

Page 5: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNAP

Page 6: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNA RNAP

Page 7: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNA RNAPP

Page 8: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNA RNA ProteinsPP

Page 9: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Modern Cell

DNA RNA ProteinsPPPP

Ribosome

Page 10: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

The Central Dogma

DNA RNA ProteinsPPP

Page 11: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

RNA World Theory• RNA can store and pass down genetic information

• Similar in structure to DNA

G

A

T

A

C

T

A

T

GC

DNA

G

A

U

C

U

RNA

Page 12: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

RNA World Theory• RNA can store and pass down genetic information• RNA can catalyze chemical processes (ribozymes)

Martick, Scott, Cell. 2014

Page 13: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

RNA World Theory

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 14: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

RNA World Theory

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 15: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

RNA World Theory

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 16: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

RNA World Theory

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 17: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Nonenzymatic RNA Polymerization

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 18: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Nonenzymatic RNA Polymerization

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 19: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Nonenzymatic RNA Polymerization

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 20: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Nonenzymatic RNA Polymerization

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 21: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Nonenzymatic RNA Polymerization

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 22: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 23: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Mariani et al., Biochemistry. 2019He et al., Nature Chem. 2016

Page 24: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 25: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Li, et al., JACS. 2017

Page 26: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Blain, Szostak, Annu. Rev. Biochem. 2014

Degradation

Page 27: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 28: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Outstanding Issues

Blain, Szostak, Annu. Rev. Biochem. 2014

Page 29: The RNA World · The origins of the RNA world. Cold Spring HarbPerspectBiol. 2012, 4. Joyce GF, SzostakJW. Protocellsand RNA Self-Replication. Cold Spring HarbPerspectBiol.2018, 10

Suggested Reading● Robertson MP, Joyce GF. The origins of the RNA world.

Cold Spring Harb Perspect Biol. 2012, 4.

● Joyce GF, Szostak JW. Protocells and RNA Self-Replication. Cold Spring Harb Perspect Biol. 2018, 10.

● Hud NV. Searching for lost nucleotides of the pre-RNA World with a self-refining model of early Earth. Nat Commun. 2018, 9.

● Hoshika S, et al. Hachimoji DNA and RNA: A genetic system with eight building blocks. Science. 2019, 363.