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Teaching and Learning of Multilingual Chemical Nomenclature with ACD/Name Andrey Yerin and all ACD/Labs team developing and supporting nomenclature tools San Francisco, USA, August 11, 2014 ACS 248th National Meeting Division of Chemical Education

Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

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Page 1: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Teaching and Learning of Multilingual Chemical Nomenclature with

ACD/NameAndrey Yerin

and all ACD/Labs team developing and supporting nomenclature tools

San Francisco, USA, August 11, 2014

ACS 248th National Meeting

Division of Chemical Education

Page 2: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature is Difficult to Learn and Teach

ACD/Labs nomenclature tools are on the market since 1996and in 1997 we got the following e-mail. Really funny but hardly arguable!

We are not exactly ‘IUPAC team’ and we agree that nomenclature is really difficult both to learn and to teach. We are trying to help.

* The actual context was about learning of obsolete‘ferrous’ and ‘ferric’ against ‘iron(II)’ and ‘iron(III)’.

Page 3: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

The development of chemical nomenclature is governed by International Union of Pure and Applied Chemistry (IUPAC).

IUPAC Nomenclature

All specific IUPAC recommendations are published in Journal of Pure and Applied Chemistry and freely available.

A collection of main recommendations can be found at www.chem.qmul.ac.uk/iupac hosted by School of Biological and Chemical Sciences, Queen Mary University of London.

In additional to specific recommendations IUPAC publishes books for all areas of chemical nomenclature. The books can be purchased but after some period the content can be available free of charge.

www.iupac.orgDivision of Chemical Nomenclature and Structure

Representation (Division VIII)

Page 4: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Learn Nomenclature or Use Programs

As a result a reliable nomenclature knowledge is lacked by all parties—students, teachers and practicing chemists.

The problem is not only that chemists do not know nomenclature well. The real problem is that many chemist still believe they can name chemical substances well.

The problem is that nomenclature publications are aimed at experienced readers. There is significant gap between educational resources and actual nomenclature recommendations.

According to investigation performed in 2005 about 25% of names in journals were wrong.

G. A. Eller, Molecules, 2006, 11, 915-928

Computer naming programs already exceed the knowledge of most chemists and do not make misprints that are so common for human beings.

Page 5: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Algorithmic Name Generation

Nomenclature software entered the market more than 20 years ago.

The programs differ significantly in possibilities but all outperform most chemists.

Naming programs are reliable and deserve integration in education.

Company Program/Tool Released Availability

Beilstein (discontinued) Autonom 1991 freeware/commercial

ACD/Labs ACD/Name 1996 freeware/commercial

ChemInnovation Software Nomenclator 1996 commercial

Chem Draw Name=Struct 2003 commercial

OpenEye Lexichem 2005 freeware/commercial

ChemAxon IUPAC name 2007 freeware/commercial

Page 6: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Labs Nomenclature Tools

ACD/Name is well recognized as the most advanced naming program supporting IUPAC nomenclature.

It is very important in this context that ACD/Name was developed keeping educational needs in mind—it is not just chemical name generation but explanation as well.

ACD/Labs has been developing nomenclature products for about 20 years.

1994 The beginning—the idea and first procedures

1996 First commercial version of ACD/Name—naming in English

1999 Generation of chemical structures from names—ACD/Name to Structure

2005 Name generation in French and German

2010 Name generation in Danish, Finnish, Italian, Netherlands, Portuguese, Spanish and Swedish

2014 New IUPAC rules and probably more languages expected

Page 7: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name Tools

Just draw a structure and push the button to get the chemical name.

Names can be generated for most classes of organic compounds in full accordance with IUPAC recommendations.

Page 8: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name tools

IUPAC numbering can be shown

The display of numbering scheme allows to understand the locants for substituents and functional groups

Page 9: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name Tools

Name fragments are associated with the structure fragments.

Pointing at any part of a name or structure allows you to understand the structure to name relationship.

Page 10: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name Tools

Name segments are explained with the corresponding IUPAC rules.

Name segments are classified by their role in chemical names.

Page 11: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name Tools

Full text of IUPAC recommendations is provided.

The links allow you to access any specific rule defining the naming principles for specific segments.

Page 12: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name Tools

Stereodescriptors are generated and explained.

An assignment of each stereodescriptor is explained with a hierarchical graph to conclude the seniority of ligands.

Page 13: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name Tools

Supports not only most classes of organic compounds but biochemicalsand some inorganic compounds also.

Thus, being powerful for scientific and industrial use, the program retains high value for all levels of chemical education.

Page 14: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature in Other Languages

All IUPAC recommendations are developed and published in English

The adaptation of English nomenclature is a responsibility of the corresponding national nomenclature committees, if existing, or groups of enthusiastic chemists with a good knowledge of nomenclature

For some languages practically all IUPAC recommendations are translated and published. For example, German and Portuguese. For other languages such translations are scarce and often outdated. For example, Spanish and Italian.

Surprisingly, you can find the translation of some major recommendations in Macedonian but not in Spanish. While more than 400 M speak Spanish and just 2 M Macedonian.

That is why for some languages there is no agreement on how to name specific classes of chemicals. Even for basic educational resources.

Page 15: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature in Other Languages

It takes significant time to translate and publish. Chemists need to wait years to follow actual nomenclature.

English 1993

It means that nomenclature conventions in some languages can fall behind in decades!

Portuguese 2002Czech 2000

Algorithmic name generation can help here as well if naming in other languages is supported.

Page 16: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

New IUPAC Organic Nomenclature

In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred Names” was published.

It is truly a long awaited publication.The work started in 1992. The IUPAC project was initiated in 2001.

This major organic nomenclature publication is an answer to the rapid development of chemistry and appearance of new classes of chemicals we have seen over the past 20 years.

The book deals with naming principles that were unchanged for about 35 years since the IUPAC Blue book was published in 1979.

Page 17: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature in Multilingual World

The availability and development of nomenclature resources inspecific language depends on:

• Speaking population and hence a number of chemists

o 500 M English, 100 M German and 5 M Finnish

• Teaching and learning chemistry in specific language

o Ireland is close in population to Finland but in Ireland chemistry is taught in English

• Degree of development of chemical nomenclature

o For some languages official recommendations do not exist. What to choose from existing variations?

• The language specific complexity of chemical nomenclature

o Chemical names share the language grammar and some languages are more difficult than others. This primarily concerns languages with inflection of nouns and adjectives according to grammatical gender and case.

Page 18: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature and Languages

Learning of nomenclature requires the memorization of a lot of names.

According to our estimations about 1000 specific names.

DA: ethan octan pyridin naphthalen

DE: Ethan Octan Pyridin Naphthalin

EN: ethane octane pyridine naphthalene

ES: etano octano piridina naftaleno

FI: etaani oktaani pyridiini naftaleeni

FR: éthane octane pyridine naphtalène

IT: etano ottano piridina naftalene

NL: ethaan octaan pyridine naftaleen

PT: etano octano piridina naftaleno

SV: etan oktan pyridin naftalen

NCH3

CH3

CH3 CH3

Page 19: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature and Languages

Chemical name follows the language grammar, for example, Latin and Germanic groups.

These two groups have rather simple grammar with practically no inflection.

DA: butansyre methylbenzoat

DE: Butansäure Methylbenzoat

EN: butanoic acid methyl benzoate

ES: ácido butanoico benzoato de metilo

FI: butaanihappo metyylibentsoaatti

FR: acide butanoique benzoate de méthyle

IT: acido butanoico benzoato di metile

NL: butaanzuur methylbenzoaat

PT: ácido butanóico benzoato de metilo

SV: butansyra metylbensoat

O

O CH3CH3

O

OH

Page 20: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature and Languages

English language and Germanic group lack any inflection.

Latin group languages have inflection, while minimal. For example in Italian:

All these specific procedures can be implemented in a program.

sodium acetate silver acetate pyridine acetate

οξικό νάτριο οξικός άργυρος οξική πυριδίνη

sodium - neutral silver - masculine pyridine - feminine

acetic acid acetic anhydride

acido acetico anidride acetica

acido - masculine anidride - feminine

The heaviest inflection exists in Greek, Slavic and Baltic languages.

Page 21: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature and Languages

Alphabetization of substituents

Track how a specific substituent migrates within the name.

DA: 2-chlor-5-methoxy-3-methyl-4-phenylcyclohexanol

DE: 2-Chlor-5-methoxy-3-methyl-4-phenylcyclohexanol

EN: 2-chloro-5-methoxy-3-methyl-4-phenylcyclohexanol

ES: 2-cloro-4-fenil-3-metil-5-metoxiciclohexanol

FI: 4-fenyyli-2-kloori-5-metoksi-3-metyylisykloheksanoli

FR: 2-chloro-5-méthoxy-3-méthyl-4-phénylcyclohexanol

IT: 2-cloro-4-fenil-3-metil-5-metossicicloesanolo

NL: 2-chloor-4-fenyl-5-methoxy-3-methylcyclohexanol

PT: 2-cloro-4-fenil-3-metil-5-metoxiciclohexanol

SV: 4-fenyl-2-kloro-5-metoxi-3-metylcyklohexanol

OH

ClCH3

OCH3

Page 22: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Nomenclature and Languages

Renumbering due to different alphabetical order.

Sometimes substituents have different locants due to different alphabetical order in the name.

5

6

4

N1

3

2

CH3 Ph

3

2

4

N1

5

6

CH3 Ph

DA: 2-methyl-6-phenylpyridin ES: 2-fenil-6-metilpiridina

DE: 2-Methyl-6-phenylpyridin FI: 2-fenyyli-6-metyylipyridiini

EN: 2-methyl-6-phenylpyridine IT: 2-fenil-6-metilpiridina

FR: 2-méthyl-6-phénylpyridine NL: 2-fenyl-6-methylpyridine

PT: 2-fenil-6-metilpiridina

SV 2-fenyl-6-metylpyridi

ACD/Labs multilingual naming was inspired by the contract with European Commission Taxation and Customs Union aimed at developing procedures for translation from English to other European languages.

Page 23: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name and Languages

The current version of ACD/Name supports naming in 10 languages

Aside from some small language specific issues the program correctly names most chemical substances, especially organic.

ACD/Name exceeds the nomenclature knowledge of most professional chemists and educators.

Page 24: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name and Languages

It is possible to select only one specific language or to select English together with any other to learn the differences.

Changing the naming preferences allows the user to see both systematic and trivial names together.

Page 25: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Name – Additional Languages

We are going to extend naming to more languages

ACD/Name supports 16 languages in our internal version, compared to 10 available in the official version and we continue to add even more.

The development is not so quick due to difficulties to find reliable sources of nomenclature rules for specific languages and a lot of basic translations to collect.We gladly accept any help in finding the sources of names in specific language.

This work is under way and new languages will appear in ACD/Name in future versions.

Page 26: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

ACD/Labs Naming Tools

Program Features

ChemSketch Name Free Free, 50 atoms only, English only*

ACD/Name Chemist Version Names only, all supported languages

ACD/Name Full featured

ACD/Name Batch Treatment of large structure sets

ACD/I-Lab Web-based, English only *, Free also

ACD/Labs produces several name generation tools.

We expect to release the new version ACD/Name with support of new IUPAC rules by the end of 2014.Additional languages will appear soon.

* We are considering the addition of multilingual naming

Page 27: Teaching and Learning of Multilingual Chemical ... · New IUPAC Organic Nomenclature In December 2013, the book “Nomenclature of Organic Chemistry. IUPAC Recommendations and Preferred

Conclusion Remarks

• Extend nomenclature teaching

o Should not be restricted by basic principles

• Consult available IUPAC nomenclature resources

o Essentials of inorganic and organic nomenclatures are expectedsoon

• Use available software tools

o Programs can help significantly in nomenclature learning andteaching

• Programming of nomenclature is a kind of science

o ACD/Labs team is proud of our achievements in this area andcontinues nomenclature-related work

Thank you