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THE CHEMISTRY OF LIFEChapter 2
Biology – Miller • Levine
ATOMS
Basic unit of matterFrom the Greek word atomos, which means “unable to be cut”
Subatomic particles:Protons – positive charge (p+)Neutrons – neutral, no charge (n0)
Electrons – negative charge (e-)
ATOMS
Nucleus – contains protons & neutrons
Electron cloud – area where electrons are located around the nucleus1st level holds 2 e-2nd level holds 8 e-3rd level holds 18 e-
Atoms are neutral because p+ = e-
ATOMS
ELEMENT
A pure substance that consists entirely of one type of atom
92 naturally occurring elementsPeriodic Table of Elements:
Represented by a 1 or 2 letter symbol
Atomic number – # of protonsMass number – protons + neutronsHorizontal rows are called periodsVertical columns are called groups
ELEMENTS
ISOTOPES
Atoms of the same element that have a different number of neutrons
Radioactive isotopes – isotopes that are unstable and give off radiationCan be used in geological dating, to
treat cancer, to kill bacteria in food, & as “tracers” in medical diagnosis
ISOTOPES
CHEMICAL COMPOUNDS
Compound – a substance formed by two or more different elementsAlways found in a fixed ratioChemically and physically different
from the elements that they include
Chemical formula – shows the number of each element in a compoundEx. H2O
CHEMICAL BONDS
Atoms in compounds are held together by chemical bonds
Valence electrons – electrons that are available to form bondsAn atom is stable when its outer
(valence) shell contains 8 e- (except H and He which are stable with 2 e-)
3 major types of bonds – ionic, covalent, and hydrogen
IONIC BONDS An ion is formed when one or more
electrons are transferred from one atom to another
Oppositely charged ions are attracted to each other forming an ionic bond
Ex. NaCl
COVALENT BONDS
Form when electrons are shared between atoms
Molecule – when atoms are joined together by a covalent bond
Ex. H2O
VAN DER WAALS FORCES
The random movement of electrons creates temporary areas of slightly positive and slightly negative charges
When molecules come close together, these positive and negative regions form a weak attraction known as van der Waals forces
THE WATER MOLECULE
Water is a polar molecule, where the electrons are not shared equallyThere is a – charge near the O and a +
charge near the HHydrogen bonds – attraction
between the H of one water to the O of anotherWeaker than covalent or ionic
HYDROGEN BONDS
COHESION & ADHESION
Cohesion – the attraction between molecules of the same substance
Adhesion – the attraction between molecules of different substances
MIXTURES
When two or more elements or compounds are physically mixed together but not chemically combined
Heterogeneous mixture – the components remain distinctSuspension – a mixture of water and
nondissolved materialsWill settle back out over time
Colloid – the particles will not settle out
MIXTURES
Homogeneous mixture – uniform composition throughoutSolution – a mixture in which all
the components are evenly distributedSolute – the substance that is dissolved
Solvent – the substance in which the solute dissolvesWater is the greatest solvent
SOLUTIONS
ACIDS, BASES, AND PH
A water molecule can react to form hydrogen (H+) and hydroxide (OH-) ions
Acid – any compound that forms H+ ions in solution (pH less than 7)
Base – any compound that forms OH- ions in solution (pH greater than 7)
ACIDS, BASES, AND PH
pH scale – a measurement system that indicates the concentration of H+ ions in a solution (0-14)
Buffer – weak acids or bases that react with strong acids or bases to prevent sudden changes in pH
CHEMICAL REACTIONS
Process that changes one set of chemicals into another set of chemicalsFe + O2 → Fe2O3
Reactants – in front of the arrowProducts – after the arrow
Law of Conservation of Matter – matter can be neither created nor destroyedEquations must be balanced
ENERGY IN REACTIONS
Endergonic – reactions that require an input of energy or store energy
Exergonic – reactions that release energy
Activation energy – the energy needed to start a reaction
ENZYMES
Some chemical reactions are too slow or have too high an activation energy
Catalyst – a substance that speeds up the rate of a chemical reaction by lowering the activation energy
Enzymes – proteins that are catalysts
EFFECT OF ENZYMES
ENZYME ACTION
The enzyme-substrate complexSubstrates – the reactantsActive site – the place where the
substrates bind to the enzymeWhen the substrates bind to the
active site they form the enzyme-substrate complex
Enzymes are specific to the substrate that they act upon (lock and key mechanism)
ENZYME-SUBSTRATE COMPLEX
REGULATION OF ENZYME ACTIVITY
Can be affected by pH and temperatureMost enzymes have an optimal pH
and temperatureCan be turned “on” or “off”Can be used over and over again