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Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee, and R. Douglas Fields Philosophical Transactions B Volume 369(1652):20130509 September 26, 2014 ©2014 by The Royal Society

Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

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Page 1: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons

by Jonathan E. Cohen, Philip R. Lee, and R. Douglas Fields

Philosophical Transactions BVolume 369(1652):20130509

September 26, 2014

©2014 by The Royal Society

Page 2: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

Activity-dependent, post-transcriptional gene regulation experiment.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society

Page 3: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

(Opposite.) Rapid, post-transcriptional regulation in hippocampal neurons mirrors activity-regulated genes in DRG axons.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society

Page 4: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

Discovery of enriched motifs for destabilized and stabilized genes. 3′-UTR analysis by MEME on downregulated (destabilized) and upregulated (stabilized) transcripts by MEME identifies miRNA-

binding sites.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society

Page 5: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

Predicted miRNAs are developmentally regulated in the hippocampus and may control nervous system development.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society

Page 6: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

miR-485 blocks NGF-induced neurite outgrowth in PC12 cells. miR-485 overexpression inhibits NGF-induced neurite outgrowth in PC12 cells.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society

Page 7: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

miR-485 decreases tau expression in hippocampal neurons.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society

Page 8: Systematic identification of 3′-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons by Jonathan E. Cohen, Philip R. Lee,

miR-485 overexpression controls tau expression and axonal outgrowth in hippocampal neurons. miR-485-5p overexpression reduced the extent of axonal outgrowth in hippocampal neurons.

Jonathan E. Cohen et al. Phil. Trans. R. Soc. B 2014;369:20130509

©2014 by The Royal Society