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Supplementary Materials for Two tissue-resident progenitor lineages drive distinct phenotypes of heterotopic ossification Devaveena Dey, Jana Bagarova, Sarah J. Hatsell, Kelli A. Armstrong, Lily Huang, Joerg Ermann, Ashley J. Vonner, Yue Shen, Agustin H. Mohedas, Arthur Lee, Elisabeth M. W. Eekhoff, Annelies van Schie, Marie B. Demay, Charles Keller, Amy J. Wagers, Aris N. Economides, Paul B. Yu* *Corresponding author. Email: [email protected] Published 23 November 2016, Sci. Transl. Med. 8, 366ra163 (2016) DOI: 10.1126/scitranslmed.aaf1090 The PDF file includes: Materials and Methods Fig. S1. Micro-CT imaging of Scx-Cre:Acvr1 [R206H]FlEx/+ , Scx-Cre:ACVR1 Q207D - Tg, and Scx-Cre mice. Fig. S2. Natural history study of Scx-Cre:Acvr1 [R206H]FlEx/+ and Scx- Cre:ACVR1 Q207D -Tg mice. Fig. S3. Natural history study of Mx1-Cre:Acvr1 [R206H]FlEx/+ and Mx1- Cre:ACVR1 Q207D -Tg mice. Fig. S4. Flow cytometric profile and gating strategy for isolation of Mx1 + lineage cells. Fig. S5. Activin A elicits SMAD1/5/8 activation in Acvr1 R206H but not WT myofibroblasts. Fig. S6. Impact of Acvr1 R206H and ACVR1 Q207D upon differentiation of Scx + cells. Fig. S7. The impact of Acvr1 R206H and ACVR1 Q207D upon the differentiation potential of Mx1 + subpopulations. Table S1. qRT-PCR primer sequences. References (5759) Other Supplementary Material for this manuscript includes the following: (available at www.sciencetranslationalmedicine.org/cgi/content/full/8/366/366ra163/DC1) www.sciencetranslationalmedicine.org/cgi/content/full/8/366/366ra163/DC1

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Page 1: Supplementary Materials for...system (Quantum FX, PerkinElmer) set to a current of 160 μA, voltage of 90 kVp, with a voxel size at 120 or 240 μm. BM transplantation BM was harvested

Supplementary Materials for

Two tissue-resident progenitor lineages drive distinct phenotypes of

heterotopic ossification

Devaveena Dey, Jana Bagarova, Sarah J. Hatsell, Kelli A. Armstrong, Lily Huang,

Joerg Ermann, Ashley J. Vonner, Yue Shen, Agustin H. Mohedas, Arthur Lee,

Elisabeth M. W. Eekhoff, Annelies van Schie, Marie B. Demay, Charles Keller,

Amy J. Wagers, Aris N. Economides, Paul B. Yu*

*Corresponding author. Email: [email protected]

Published 23 November 2016, Sci. Transl. Med. 8, 366ra163 (2016)

DOI: 10.1126/scitranslmed.aaf1090

The PDF file includes:

Materials and Methods

Fig. S1. Micro-CT imaging of Scx-Cre:Acvr1[R206H]FlEx/+, Scx-Cre:ACVR1Q207D-

Tg, and Scx-Cre mice.

Fig. S2. Natural history study of Scx-Cre:Acvr1[R206H]FlEx/+ and Scx-

Cre:ACVR1Q207D-Tg mice.

Fig. S3. Natural history study of Mx1-Cre:Acvr1[R206H]FlEx/+ and Mx1-

Cre:ACVR1Q207D-Tg mice.

Fig. S4. Flow cytometric profile and gating strategy for isolation of Mx1+ lineage

cells.

Fig. S5. Activin A elicits SMAD1/5/8 activation in Acvr1R206H but not WT

myofibroblasts.

Fig. S6. Impact of Acvr1R206H and ACVR1Q207D upon differentiation of Scx+ cells.

Fig. S7. The impact of Acvr1R206H and ACVR1Q207D upon the differentiation

potential of Mx1+ subpopulations.

Table S1. qRT-PCR primer sequences.

References (57–59)

Other Supplementary Material for this manuscript includes the following:

(available at

www.sciencetranslationalmedicine.org/cgi/content/full/8/366/366ra163/DC1)

www.sciencetranslationalmedicine.org/cgi/content/full/8/366/366ra163/DC1

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Table S2. Original data for Figs. 5 and 6 and figs. S5 to S7 (provided as an Excel

file).

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Materials and Methods

Mouse breeding, genotyping, and conditional expression

Mice were maintained in accordance with Institutional Animal Care and Use Committee guidelines

under approved experimental protocols. Cre-inducible constitutively-active ACVR1Q207D transgenic mice

and inducible Acvr1[R206H]FlEx/+ knock-in mice were as previously described (7, 57). Both ACVR1Q207D-

Tg and Acvr1[R206H]FlEx/+ mice were bred onto C57BL/6 backgrounds for >8 generations, and bred with

Gt(ROSA)26Sortm4(ACTB-tdTomato,-EGFP)Luo (Rosa-mTmG) or Gt(ROSA)26Sortm1(EYFP)Cos (Rosa-YFP) reporter

mice (29, 30) and with various promoter-specific Cre transgenic or Cre knock-in mice to yield

compound transgenic and/or knock-in mice expressing tissue-specific Cre and inducible reporter alleles.

In the case of Mx1-Cre mice, Cre recombinase activity was induced by administering pIpC (Sigma) at a

dose of 4.2 µg/g i.p. every other day to mice from age P7 to P19 for a total of 7 doses. Fluorescent,

recombined cells obtained from Mx1-Cre:ACVR1Q207D-Tg:Rosa-YFP, Mx1-Cre:Acvr1[R206H]FlEx/+:Rosa-

YFP, and Mx1-Cre:Rosa-YFP controls are abbreviated as ACVR1Q207D Mx1+YFP+, ACVR1R206H

Mx1+YFP+, and WT Mx1+YFP+ cells. Muscle injury was induced by i.m. injection of 2 µg cardiotoxin

(Sigma) into the popliteal fossa on P21. Mx1-Cre knock-in (56), SMMHC-Cre knock-in (51), Vav1-Cre

(30), Cspg4-CreERT2 (55), and Gt(ROSA)26Sortm1(cre/ERT2)Tyj (Rosa-CreERT2) (58) mouse strains were

obtained from Jackson. C57BL/6 Dmdmdx-5cv:Rag1null mice (59), SM22α-Cre (52), Scx-Cre, Scx-GFP

(26), Myf6-Cre (50), Pax7-Cre, Pax7-CreERT2 (49), and VE-Cadherin-CreERT2 mice (54) were obtained

from their labs of origin. For tamoxifen-inducible strains, P14-P28 mice were treated with tamoxifen 50

mg/kg i.p. daily (Sigma) in peanut oil from P14-P21 to induce Cre recombinase activity. Rosa-

CreERT2:Acvr1[R206H]FlEx/+ mice maintained on mixed C57BL/6NTac-129S6/SvEvTac background were

treated with 40 mg/kg of tamoxifen i.p. daily for 8 d to induce Cre activity. Starting concurrently, mice

were injected s.c. with LDN-212854, which was synthesized as described (14), at 3 mg/kg (n=8) or

vehicle (n=8) twice daily for 4 weeks.

Imaging

Assessment of YFP reporter fluorescence and radiographic assessment of HO were performed in whole

mice directly after euthanasia (MS FX In-Vivo Pro, Bruker). Micro-computed tomography (micro-CT)

imaging was carried out on samples fixed overnight in 1% paraformaldehyde followed by scanning

(µCT35, ScanCo). For the serial assessment of heterotopic bone, mice were anesthetized by inhaled

isoflurane (1-2%) and scanned with a field of view at 60 mm x120 mm, using an in vivo micro-CT

system (Quantum FX, PerkinElmer) set to a current of 160 μA, voltage of 90 kVp, with a voxel size at

120 or 240 μm.

BM transplantation

BM was harvested by flushing the long bones (femur, pelvis) with ice-cold PBS, followed by RBC lysis

(BD, Lyse). Live cells were counted by Trypan blue staining. WT C57BL/6 dams were injected on E19

with busulfan (15 mg/kg) i.p., and resulting pups were injected i.p. on P2 with 5 x 106 Mx1+YFP+ BM

cells isolated from P21 pIpC-treated Mx1-Cre:ACVR1Q207D-Tg:Rosa-YFP donors. Alternatively, E19

dams carrying Mx1-Cre:ACVR1Q207D-Tg:Rosa-YFP pups were treated with busulfan, and resulting pups

were injected i.p. on P2 with 5 x 106 bone marrow cells from P21 WT or Rosa-mTmG donors. Recipient

pups were treated with 4.2 µg/g pIpC i.p. every other day from P14-P26. Mice were treated with

cardiotoxin on P30 and assessed at P60 for HO and engraftment of isogeneic BM.

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Histology and immunofluorescence

Hind limbs were fixed overnight in 1% PFA at 4°C followed by decalcification in saturated EDTA for 1

week. Samples were then equilibrated in 30% sucrose overnight before embedding in OCT (Tissue-Tek,

4583) and storage in -80°C. The CryoJane tape-transfer system (Leica Biosystems) was used to obtain

10 µm sections. For histochemical staining, cryosections were post-fixed in 4oC methanol for 5 min and

air dried, followed by staining with freshly prepared hematoxylin and eosin solutions, Movat’s modified

pentachrome, BM Purple (Roche), Alcian Blue (3%), or Alizarin Red (1%) solutions. For fluorescence,

PBS-hydrated cryosections were analyzed for YFP or Tomato fluorescence without further fixation. For

immunofluorescence, sections were blocked with 5% goat serum in PBS for 45 min at 25oC, followed

by incubation with primary antibodies in blocking solution overnight at 4oC. For intracellular antigens,

permeabilization was carried out with 0.1% Triton X-100 in blocking solution. Alexa Flour 488, Cy3, or

Cy5-linked secondary antibodies were used to stain sections for 45 min at 25oC. DAPI-containing

mounting medium (Vector Shield) was used to mount sections. An Olympus BX63 and CellSens

Dimension software were used for image acquisition and analysis (Olympus).

Isolation and flow cytometry analysis of Mx1+ and Scx+ cells

Mx1-Cre:Rosa-YFP or Mx1-Cre:ACVR1Q207D-Tg:Rosa-YFP mice were sacrificed 48 h after the last

pIpC dose or 48 h after cardiotoxin injection. Mx1+ interstitial cells were isolated by mechanical and

enzymatic digestion of the gastrocnemius muscle using the muscle cell isolation kit (Miltenyi), as per

manufacturer’s instructions. The muscle dissociation protocol on a gentleMACS dissociator (Miltenyi)

was used for mechanical and enzymatic disruption. An interstitial cell pellet was obtained after RBC

lysis and filtered through a 40 µm strainer (BD Biosciences). Cell surface marker analysis was carried

out on the LSR II (BD Biosciences), and cell sorting was carried out on the MoFlo (Beckmann Coulter)

or FACS Aria (BD Biosciences). DAPI was used as a viability marker for cell sorting. The following

antibodies were used: CD45-PE or APC (eBioscience), CD31-PE (BD Pharmingen) or CD31-Pacific

Blue (eBioscience), Sca1-PE-Cy7 (eBioscience), PDGFRα-PE (eBioscience), CD11b-PerCP-Cy5.5

(Biolegend), c-kit-Pacific Blue (Biolegend), CD105-APC (Biolegend), CD90-Pacific Blue (Biolegend),

Tie2-APC (Biolegend).

Two-week-old Scx-Cre:Rosa-YFP or Scx-Cre:ACVR1Q207D-Tg:Rosa-YFP mice were sacrificed, and

muscles and tendons of the hind limb were mechanically dissected from the long bones, followed by

enzymatic digestion with a mix of collagenase II (Life Technologies, 3 mg/ml) and dispase (Life

Technologies, 4 mg/ml), prepared in DMEM for 45 min at 37oC. Intermittent tissue mincing was carried

out using the tumor 4 program on the gentleMACS dissociator. Scx+YFP+ cells were sorted by FACS,

using a the same panel of antibodies to those used to analyze Mx1+ populations. Freshly sorted Mx1+and

Scx+ cells were either frozen immediately for RNA studies or seeded in their respective growth media

[and on plates coated with Matrigel (Corning) in case of Mx1+ cells] for differentiation assays. Mx1+

cells were expanded in DMEM supplemented with 20% FBS (Life Technologies), 10% horse serum

(Life Technologies), 2.5 ng/ml bFGF (R&D Systems), 100 U/ml penicillin and 100 µg/mL streptomycin

(Life Technologies), whereas Scx+ cells were seeded in DMEM containing 10% FBS, 100 µM β-

mercaptoethanol (Sigma), as well as penicillin and streptomycin.

Adoptive transfer of muscle interstitial cells

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Mx1-Cre:ACVR1Q207D-Tg:Rosa-YFP or Mx1-Cre:Rosa-YFP mice were injected with pIpC on

alternating days from P7 to P19. Interstitial cells were isolated from dispersed muscles on P21, and

viable YFP+ cells were sorted and collected by FACS, with enrichment or depletion of various markers.

YFP+ cells (5 x 105) were resuspended in 40 µL of ice-cold high concentration Matrigel, and injected

with a 31 g needle i.m. into the popliteal fossa of P14 Dmdmdx-5cv:Rag1null (Mdx-/-) C57BL/6 background

recipients. Cells were allowed to engraft for two weeks, at which point the animals received the standard

dose of cardiotoxin. After 4 weeks, cardiotoxin-injected recipient mice were scanned for HO by x-ray

and YFP imaging.

In vitro differentiation assays

Equal numbers (500-1000 cells per well) of sorted cells were seeded in growth media onto Matrigel-

coated 96-well plates. Cells were seeded in quadruplicate for osteo-, chondro-, and adipogenic

differentiation analysis in regular growth medium, or alternatively in specific differentiation-inducing

medium. For the former experiments, cells were expanded in bFGF-supplemented growth medium for 2

weeks, followed by analysis of spontaneous differentiation. For the latter experiments, after expansion in

growth medium, cells were transferred to specific differentiation medium. All differentiation media used

basal DMEM, supplemented for osteogenic differentiation with 0.1 µM dexamethasone, 50 µg/ml

ascorbic acid, and 10 mM β-glycerophosphate, for chondrogenic differentiation with 50 µg/ml ascorbic

acid, 1 ng/ml TGF-β1, and 1 µM dexamethasone, or for adipogenic differentiation with 5 µg/ml insulin,

0.5 µM IBMX, 60 µM indomethacin, and 1 µM dexamethasone (all from Sigma), and grown for an

additional 3 weeks. For experiments testing the effects of ligands upon cell differentiation, cells were

treated with media containing reduced fetal calf serum (2%) supplementation and varying concentrations

of BMP or activin ligands based on empirically determined EC50 for these endpoints.

Analysis of multi-lineage differentiation

Relative counts of cultured cells grown in 96-well plates were determined based on Hoechst 33342 (10

µg/ml at 37oC for 45 min, Sigma) fluorescence (Ex350/Em450 nm) measured with a microplate reader

(FLUOstar Omega, BMG) before analysis of differentiation. Alkaline phosphatase activity was assayed

as a surrogate of spontaneous endochondral differentiation, by lysing cells in 1% Triton X-100, reacting

with pNPP substrate (Sigma, RT x 15’-30’), and measuring absorbance at 405 nm. Alkaline phosphatase

activity in fixed cells was measured using BM Purple stain (Roche). For analysis of mineralization, as

well as chondrogenic and adipogenic differentiation, cells were fixed with 0.5% glutaraldehyde (Sigma)

for 20 min, followed by staining with Alizarin Red (2% in dH2O), Alcian Blue (1% in 3% acetic acid),

or Oil Red O (in 60% isopropanol). Mineralization was quantified by solubilization in 10% formic acid

and measuring absorbance at 450 nm; Alcian blue staining was quantified by solubilization with 6M

guanidinium HCl, and measuring absorbance at 595 nm; Oil Red O stained lipid droplets were

solubilized with isopropanol, and absorbance measured at 500 nm.

Analysis of gene expression

Freshly sorted Mx1+ or Scx+ cells were centrifuged at 400 g x 10 min, the pellets were resuspended in

Trizol (Sigma), and manufacturer’s instructions were followed for RNA isolation. 1 µg RNA was used

for cDNA synthesis, using a high capacity cDNA synthesis kit (KAPA Biosystems). Abundance was

determined by quantitative RT-PCR using SYBR Green master mix (KAPA Biosystems) with an

Eppendorf realplex2 cycler. Primer pairs are provided in table S1.

Myofibroblast cultures and ligand-mediated signaling

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For studies examining the impact of Acvr1R206H on ligand-mediated signaling, primary lung

myofibroblast cells were isolated from Acvr1[R206H]FlEx/+ mice using the lung dissociation kit and

gentleMACS dissociator (Miltenyi) and cultured in RPMI supplemented with 10% FCS and antibiotics.

After expansion and 2 sequential passages, cells were subjected to infection with adenovirus expressing

Cre recombinase (Ad-Cre) or Ad-RFP (20 MOI) and tested by qPCR to confirm high frequency (>90%)

recombination of the Acvr1[R206H]FlEx allele. Cells were stimulated with varying concentrations of

recombinant BMP, TGF-β, activin, and GDF ligands (R&D Systems) based on empirically determined

EC50 for 30 min at 37oC. Extracts of cultured cells homogenized in Laemmli’s buffer were separated by

SDS-PAGE and immunoblotted for phosphorylated SMAD1/5 and SMAD3 using a rabbit monoclonal

Ab recognizing both proteins at different molecular weights (clone EP823Y/ab52903,

Epitomics/Abcam) or a rabbit monoclonal antibody recognizing SMAD1/5/8 (clone 13820, Cell

Signaling).

Statistical analysis

Unpaired two-tailed Student’s t-test with Welch’s correction was used to determine the significance of

differences observed between wild-type and mutants, for in vitro differentiation assays, gene expression

studies, ligand and drug treatments. Data have been presented as mean ± SEM to represent the variation

within a group. GraphPad Prism software and Microsoft Excel were used for data analysis.

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Supplementary figure Legends

Fig. S1. Micro-CT imaging of Scx-Cre:Acvr1[R206H]FlEx/+, Scx-Cre:ACVR1Q207D-Tg, and Scx-Cre mice.

Both Scx-Cre:Acvr1[R206H]FlEx/+ and Scx-Cre:ACVR1Q207D-Tg mice at 6 months of age demonstrate similar patterns

of heterotopic ossification (white arrows) of tendons and ligaments, and intra-articular and peri-articular

ossification of joints diffusely through the axial (costochondral joints and paraspinal ligaments) and appendicular

(shoulders, hips, knee, Achilles tendons, tibialis anterior ligaments) skeleton. In comparison, age-matched Scx-

Cre littermate mice lack detectable ossification of these tissues.

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Fig. S2. Natural history study of Scx-Cre:Acvr1[R206H]FlEx/+ and Scx-Cre:ACVR1Q207D-Tg mice.

Although the areas of heterotopic ossification (HO, white arrows) in the distal hindlimbs (retropopliteal, tibialis

anterior ligament, and Achilles tendon) were similar, a time course study of HO in representative mice by X-ray

demonstrates the relatively slower progression and variable phenotypic penetrance of HO lesions in Scx-

Cre:Acvr1[R206H]FlEx/+ mice at 18, 28 and 35 weeks, approaching more complete penetrance at 52 weeks (top

panels), shown quantitatively in middle panel, as compared to essentially 100% penetrance at these sites within 12

weeks in Scx-Cre:ACVR1Q207D-Tg mice (bottom panels).

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Fig. S3. Natural history study of Mx1-Cre:Acvr1[R206H]FlEx/+ and Mx1-Cre:ACVR1Q207D-Tg mice. Although

both types of mice developed HO restricted to muscle tissues only after injury with CTX, a time course study of

HO demonstrated slightly slower progression and reduced phenotypic penetrance in Mx1-Cre:Acvr1[R206H]FlEx/+

mice (30-50% penetrance) compared to Mx1-Cre:ACVR1Q207D-Tg mice (100% penetrance), both shown by X-ray

at 60 days after injury.

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Fig. S4. Flow cytometric profile and gating strategy for isolation of Mx1+ lineage cells. Interstitial cells were

dissociated and isolated from skeletal muscle interstitium (top panel) obtained from Mx1-Cre:Rosa26-YFP mice,

at P21 after pIpC treatment (P7-P19), with 30-50% of interstitial cells undergoing recombination, with muscles

from Mx1-Cre mice (top right) used as color controls. Cells were similarly isolated from the bone marrow

(bottom panel) of Mx1-Cre:Rosa26-YFP mice at P21 after pIpC treatment (P7-P19), reflecting high frequency

recombination.

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Fig. S5. Activin A elicits SMAD1/5/8 activation in Acvr1R206H but not WT myofibroblasts. (A) Immunoblot of

isogenic Acvr1R206H/+ and WT cells isolated from conditional Acvr1[R206H]FlEx/+ mice stimulated with varying

concentrations of BMP, activin, and TGFβ ligands. Staining with an antibody recognizing p-SMAD1 and p-

SMAD3 as higher and lower molecular weight bands revealed activation of BMP and TGF-β effectors,

respectively, with BMP signaling activation confirmed by an anti-p-SMAD1/5/8 antibody. Acvr1R206H/+ cells

exhibited marked gain-of-function in activating SMAD1/5/8 in response to activin A not seen in WT cells.

Similarly, Acvr1R206H/+ Mx1+ cells and isogenic WT Mx1+ cells cultured in vitro revealed differential expression

of Col1A2 and Fmod not at baseline in growth medium (B), but after (C) treatment with activin A (1 nM) for 48 h

(n=4; *p=0.035, **p=0.022).

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Fig. S6. Impact of Acvr1R206H and ACVR1Q207D upon differentiation of Scx+ cells. A. Scx+ cells were isolated

from hindlimb tendons of 2-week-old Scx-Cre:ACVR1Q207D-Tg:Rosa26-YFP mouse cells and sorted for lineage

markers, CD45 and CD31, stem cell marker Sca1, and PDGFRα (CD140a). B-D. After isolation from hindlimb

tendons, WT vs. mutant Acvr1R206H-expressing Scx+YFP+ cells were cultured in basal tendon culture medium in

the presence or absence of activin A (75 ng/mL), BMP4 (7.5 ng/mL), or BMP6 (7.5 ng/mL), and osteogenic,

chondrogenic, and adipogenic differentiation were assessed based on B. alkaline phosphatase (ALP) expression,

C. Alcian Blue staining, and D. Oil Red O (ORO) staining one week after ligand stimulation. Activin A enhanced

osteogenic and chondrogenic differentiation in mutant Scx+ cells, whereas adipogenic differentiation was

diminished in mutant Scx+ cells in the presence or absence of ligands (n=4; B. *p=0.028; C. **p=0.012; D.

*p=0.033, **p=0.0026, ***p=0.0045). Sorted PDGFRα+ and PDGFRα- subpopulations of Scx+ cells obtained

from tendons of Scx-Cre:ACVR1Q207D-Tg/Rosa26-YFP mice were cultured in specific media to induce osteogenic,

chondrogenic, and adipogenic differentiation for two weeks, and then assayed via E. Alizarin Red staining, F.

Alcian Blue staining, and G. ORO staining (n=5; E. *p=0.01175, **p=9.15x10-6 F. *p=0.007; G. *p=7.7x10-6;

**p=0.006).

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Fig. S7. The impact of Acvr1R206H and ACVR1Q207D upon the differentiation potential of Mx1+

subpopulations. A. Mx1+ muscle interstitial cells were isolated from the gastrocnemius muscles of 3-week-old

Mx1-Cre:ACVR1Q207D-Tg:Rosa26-YFP mice after pIpC treatment P7-P21 and sorted for lineage markers, CD45

and CD31, stem cell marker Sca1, and PDGFRα. B. Isolated Mx1+CD45-CD31- (Lin-) Sca1+ cells from muscles

of control (Mx1-Cre:Rosa26-YFP) and mutant (Mx1-Cre:Acvr1[R206H]FlEx:Rosa26-YFP) mice were cultured for

one week in myogenic culture medium and assessed for adipogenic differentiation by Oil Red O staining,

revealing spontaneous adipogenic differentiation among WT cells and decreased adipogenic potential among

mutant cells. C. Analysis of Mx1- vs. Mx1+ lineages isolated from Mx1-Cre:ACVR1Q207D-Tg mice cultured in basal

medium reveals enhanced endochondral potential (based on alkaline phosphatase expression) among CD31- and

CD45- subpopulations (n=4-8; *p=0.004, **p=0.005, †p=0.002, unpaired Student’s t-test). D. Analysis of Mx1+

lineages isolated from mutant (Mx1-Cre:ACVR1Q207D-Tg:Rosa26-YFP) vs. WT (Mx1-Cre:Rosa26-YFP) mice

reveals enhanced endochondral potential in mutant cells among CD31-, CD45-, and Lin-Sca1+PDGFRα+

subpopulations but not CD31+ cells (n=4-8; *p=0.003, **p=0.006, †p=0.047).

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Table S1. qRT-PCR primer sequences.

Gene Primer sequence

18S Forward: 5′- CGGCTACCACATCCAAGGAA -3′

Reverse: 5′- GCTGGAATTACCGCGGCT -3′

Id1 Forward: 5′- CCTAGCTGTTCGCTGAAGGC -3′

Reverse: 5′- GTAGAGCAGGACGTTCACCT -3′

ALK2 Forward: 5′-GTGGAAGATTACAAGCCACCA -3′

Reverse: 5’-GGGTCTGAGAACCATCTGTTAGG -3′

Sox9 Forward: 5’-TCAGATGCAGTGAGGAGCAC-3’

Reverse: 5’-CCAGCCACAGCAGTGAGTAA-3’

Pai1 Forward: 5’- ACAGCCAACAAGAGCCAATC -3’

Reverse: 5’- TTTCCCAGAGACCAGAACCA -3’

Runx2 Forward: 5’-GCAGTTCCCAAGCATTTCAT-3’

Reverse: 5’-CACTCTGGCTTTGGGAAGAG-3’

Osterix Forward: 5’- TATGCTCCGACCTCCTCAACT -3’

Reverse: 5’- TCCTATTTGCCGTTTTCCCGA -3’

Scleraxis Forward: 5’-AACACGGCCTTCACTGC-3’

Reverse: 5’-CTTCGAATCGCCGTCTT-3’

Collagen 1A2 Forward: 5’- GTAACTTCGTGCCTAGCAACA -3′

Reverse: 5’- CCTTTGTCAGAATACTGAGCAGC -3′

Collagen 2A1 Forward: 5’-AAAGGACAGACGGGCGAACC-3′

Reverse: 5’-GCTCTCCGGGACGGCCAGGGT-3′

Osteopontin Forward: 5’- AGCAAGAAACTCTTCCAAGCAA -3’

Reverse: 5’- GTGAGATTCGTCAGATTCATCCG -3’

Fibromodulin Forward: 5’-GAAGGGTTGTTACGCAAATGG-3’

Reverse: 5’-AGATCACCCCCTAGTCTGGGTTA-3’

Biglycan Forward: 5’-CCTTCCGCTGCGTTACTGA-3’

Reverse: 5’-GCAACCACTGCCTCTACTTCTTATAA-3’

Bone Specific Protein (BSP) Forward: 5’- AAGCAGCACCGTTGAGTATGGG -3′

Reverse: 5’- ACCCTCGTAGCCTTCATAGCCA -3′

Cartilage Oligomeric Matrix

Protein (COMP)

Forward: 5’-CGCAGCTGCAAGACGTGAGAGAGCTGT-3’

Reverse: 5’-CCGAATTCCGCTGGTCTGGGTTTCGA-3’

PPARγ Forward: 5’-TTTTCAAGGGTGCCAGTTTC-3’

Reverse: 5’-AATCCTTGGCCCTCTGAGAT-3’