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Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute.

Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

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Page 1: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Step 2: Make a Causal Model

Step 2: Make a Causal Model

Farrokh Alemi Ph.D.

This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung

Institute.

Page 2: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Step 2: Make a Causal Model

Step 2: Make a Causal Model

This lecture continues from the lecture on making a list of

causes

Page 3: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

• Real world relationships• Visual network of causes & effects• Probability distribution

Step 2: Make a Model from Your List

Page 4: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Put Each Cause in a Node

Page 5: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Put the Effect to the Right

Page 6: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Connect Causes to Effect

Page 7: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Put in Constraints

Page 8: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Equivalent Probability Model

Page 9: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Each Node a Function of Nodes Linking to It

Page 10: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Combination of Multiple Causes

p(Exercise | Ready to bike, Ready to shower at gym, Sleep early)= highp(Exercise | Ready to bike, Ready to shower at gym, Slept late)= Between low and high p(Exercise | Ready to bike, No plans to shower at gym, Sleep early)= Between low and high p(Exercise | No plans to bike, Ready to shower at gym, Sleep early)= Between low and high p(Exercise | Ready to bike, No plans to shower at gym, Slept late)= Between low and high p(Exercise | No plans to bike, Ready to shower at gym, Slept late)= Between low and high p(Exercise | No plans to bike, No plans to shower at gym, Slept late)= Low

Page 11: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Out of Sight, Out of Mind

Breakfast time

Page 12: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Probabilistic Dependence

Page 13: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Probabilistic Dependence

biking)Plan |Exercise(Exercise)( pp

Page 14: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Probabilistic Dependence

Page 15: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Probabilistic Dependence

shower) gymPlan |Exercise(Exercise)( pp

Page 16: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Probabilistic Dependence

early) Sleeping|Exercise(Exercise)( pp

Page 17: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

• If we knew …• P(A|B) = P(A)

Probabilistic Independence

early) Sleeping|Exercise(Exercise)( pp

Page 18: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Probabilistic Independence

early) Sleeping|shower Plan to(shower) Plan to( pp

Page 19: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Serial Nodes: Root Causes

Rain) bike, Ready to|Exercise(

bike) Ready to|Exercise(

p

p

Page 20: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Multiple Causes

early) Sleeping Exercise,|shower Plan to(

Exercise)|shower Plan to(

p

p

Page 21: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Causa

l model

Probability distribution

Test against data

Probabilities Can Be Tested Against Data

Page 22: Step 2: Make a Causal Model Farrokh Alemi Ph.D. This research was funded by Grant RO1 HL 084767 from the National Heart Blood and Lung Institute

Lecture ContinuesLecture Continues

Step 3: Thought Experiments