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Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines www.bizint.com Matt Eberle John Willmore, VP Product Development August 2018

Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

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Page 1: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

Software for presenting results of chemical structure searches

Patents & IP Sequences | Clinical Trials | Drug Pipelines

www.bizint.com

Matt Eberle

John Willmore, VP Product Development

August 2018

Page 2: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 2

Agenda • Integrating unique IP information • Challenges in reporting chemical structure

searches • New solution: summary records with hit

structures • Integrate unique IP information & hit

structures • Future directions • Questions

Page 3: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 3

BizInt Smart Charts - Integrate unique information from fulltext, family, and IP

sequence databases

Page 4: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

Reference Rows integrated report

Page 5: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 5

Challenges in reporting chemical structure searches • Multiple hit structures per record possible

(probable) • Report options generally record-centric, not

structure centric. That means… • Transcript and other display options repeat the

same structure. • Structures take up space and not always

formatted well – ie page breaks • Solution is often a lot of manual work

Page 6: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 6

A New Solution for reporting hit structures…

"Exemplified Compounds Table linked to Citing Publications" - presented by Maddy Marley (GSK) at PIUG 2018 Annual Conference, Alexandria, Virginia, May 2018. bizint.com/slides

Page 7: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 7

Summary Record export with Hit Structures

New STN

Page 8: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 8

Summary Record export with Hit Structures

Classic STN

(STN Express)

Page 9: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 9

Summary Record export with Hit Structures

STNext

Page 10: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 10

Or, structure oriented “Index of Hit Structures”

Each hit substance identified Links to references

for each structure

Multiple images (continuation)

or mixtures

Structures with annotations

Page 11: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 12

Importing transcripts with hit structures

New STN: BizInt export – must include both REGISTRY and CAplus records in export http://www.bizint.com/support/create/newstn_hitstr.php

Classic STN: Using STN Express, display HITSTR, save transcript as RTF. If transcript opens in Word DO NOT SAVE! STNext: Display HITSTR. Turn off enhanced display. Save as RTF.

Page 12: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 17

Option: Index of Hit Structures

Page 13: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 18

Option: Hit Structures

Page 14: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 19

Option: Index Terms

Page 15: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 21

Create reports integrating key IP data…

Page 16: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 26

Integrate Hit structures with Reference Rows

Reference Rows is a utility to combine multiple records from the same family into one “row” Records grouped by “Common Family” Matching publication numbers in the family Uses: • Add claims from other sources • Link sequence results with hit structures • Merge hit structures spread across multiple

CAplus records (“mega-TAN” records)

Page 17: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 29

Option: Claims + Hit Structures

Page 18: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 30

Integrate Hit structures with Reference Rows

Reference Rows is a utility to combine multiple records from the same family into one “row” Records grouped by “Common Family” Matching publication numbers in the family Uses: • Add claims from other sources • Link sequence results with hit structures • Merge hit structures spread across multiple

CAplus records (“mega-TAN” records)

Page 19: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 32

Link sequence results with hit structures

Follow Cookbook recipe to create a summary of sequence hits for each

Page 20: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 33

Option: Alignments + Hit Structures

Page 21: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 34

Option: Alignments + Hit Structures

Page 22: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 35

Integrate Hit structures with Reference Rows

Reference Rows is a utility to combine multiple records from the same family into one “row” Records grouped by “Common Family” Matching publication numbers in the family Uses: • Add claims from other sources • Link sequence results with hit structures • Merge hit structures spread across multiple

CAplus records (“mega-TAN” records)

Page 23: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 36

Group Mega-TAN records

Multiple CA records for a single family…

Page 24: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 37

Group Mega-TAN records

Simply send to Reference Rows and export!

Page 25: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 38

Future Directions

• Options to control display • Mark new structures in updated reports • More sources (e.g. MARPAT) • More export formats • Hit structures in the table

Page 26: Software for presenting results of chemical structure searches · Software for presenting results of chemical structure searches Patents & IP Sequences | Clinical Trials | Drug Pipelines

© 2018 BizInt Solutions, Inc | www.bizint.com 39

2018 is the Year of the Dog!

Thank you… Questions???

bizint.com/slides