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Research and teaching with Research and teaching with blogs and wikis blogs and wikis
[email protected]@drexel.edudu
Feb 23, 2007Feb 23, 2007Drexel University Chemistry Department
Philadelphia Area Educational Technology Conference
Where is Science headed?Where is Science headed?
WE ARE HEREWE ARE HERE
The Robot ScientistThe Robot Scientist
How will this happen?How will this happen?
Self-organizing reduntant processesSelf-organizing reduntant processes Agents can participate with zero or Agents can participate with zero or
near-zero cost (free hosted services)near-zero cost (free hosted services) Fully Open Access (Read and Write)Fully Open Access (Read and Write) Publication of all aspects of the Publication of all aspects of the
scientific process: Open Source scientific process: Open Source Science / Science / Open Notebook ScienceOpen Notebook Science
How can machines know what How can machines know what is important?is important?
Ask the humansAsk the humans
UsefulChem BlogUsefulChem Blog
What chemists think is What chemists think is important in 2005important in 2005
Find-A-DrugFind-A-Drug
Diketopiperazine LibraryDiketopiperazine LibraryEvolves to: on pot Evolves to: on pot
Ugi Ugi reaction/cyclizationreaction/cyclization
First iteration: First iteration: Solid Support Solid Support
SynthesisSynthesis
The Molecules BlogThe Molecules Blog
The Experiments BlogThe Experiments Blog
Comments from peersComments from peers
The UsefulChem WikiThe UsefulChem Wiki
Telling the story of the failuresTelling the story of the failures
Experiments moved to wikiExperiments moved to wiki
Experiment HistoryExperiment History
Experiment EditsExperiment Edits
Third Party Time-Stamp on Third Party Time-Stamp on Experiment VersionsExperiment Versions
Monitoring experimental Monitoring experimental progressprogress
How are people finding our How are people finding our experiments?experiments?
Molecules found by InChIMolecules found by InChI
Automation in UsefulChemAutomation in UsefulChem
CMLRSS feed on BioclipseCMLRSS feed on Bioclipse
CMLRSS feed on BloglinesCMLRSS feed on Bloglines
Open science connectivityOpen science connectivity
More info on open source science here
http://usefulchem.wikispaces.com
Extending the interaction Extending the interaction outside of scienceoutside of science
usefulchem.blogspot.comusefulchem.blogspot.com
The blog as an integrative The blog as an integrative tooltool
usefulchem.wikispaces.com/Exp049usefulchem.wikispaces.com/Exp049
The wiki as the laboratory The wiki as the laboratory notebooknotebook
usefulchem.wikispaces.com/Exp049 (2 usefulchem.wikispaces.com/Exp049 (2 min)min)
Graphical Mining of Data with Graphical Mining of Data with JSpecViewJSpecView
neurodatabase.orgneurodatabase.org
Raw Experimental DataRaw Experimental Data
Selected Experiments (some Selected Experiments (some failed)failed)
Orgprepdaily.wordpress.comOrgprepdaily.wordpress.com
Orgprepdaily.wordpress.comOrgprepdaily.wordpress.com
Vendor ReliabilityVendor Reliability
Generalized ProtocolsGeneralized Protocols
Openwetware.orgOpenwetware.org
Lab Notebook for intra-group Lab Notebook for intra-group communicationcommunication
Openwetware.orgOpenwetware.org
Discussing HypothesesDiscussing Hypotheses
RRResearch.blogspot.comRRResearch.blogspot.com
Writing Code for the Writing Code for the Automation ComponentAutomation Component
Also – Rich Apodaca, Christoph Also – Rich Apodaca, Christoph Steinbeck, Peter Murray-RustSteinbeck, Peter Murray-Rust
