Report of President 2012/2013 - School of Agriculture ... · Report of President 2012/2013 - School of Agriculture & Food Science >> Book Chapters >> Peer Reviewed Journals >> Other

Report of President 2012/2013 - School of

Agriculture & Food Science

>> Book Chapters

>> Peer Reviewed Journals

>> Other Journals

>> Conference Publications

>> Published Reports

>> Other Publications

Book Chapters

Dr Tommy Boland

Purcell, P.J., O'Brien, M., Boland, T.M., McEvoy, M. O'Kiely, P. (2013) 'The Impact of

Perennial Ryegrass Variety Throughout the Growing Season on in vitro Rumen Methane

Output' In: Purcell, P.J., O'Brien, M., Boland, T.M., McEvoy, M. O'Kiely, P (eds).

Breeding strategies for sustainable forage and turf grass improvement. Netherlands:

Springer.

Dr James Breen

Clancy, D., Breen, J., Morrissey, K., O'Donoghue, C. and Thorne, F. (2013) 'The

Location Economics of Biomass Production for Electricity Generation' In: O'Donoghue,

C., Ballas, D., Clarke, G., Hynes, S. and Morrissey, K (eds). Spatial Microsimulation for

Rural Policy Analysis. Heidelberg: Springer.

Dr Olga Grant

Grant, OM (2013) 'Measuring evapotranspiration of hardy ornamental nursery stock: a

hurdle for irrigation management' In: Er-Raki, S (eds). Evapotranspiration: processes,

sources and environmental implications. New York: Nova Publishers. , pp.49-72

Dr Emmeline Hill

Hill EW, Katz LM, MacHugh DE; (2013) 'Genomics of Performance' In: Chowdhary B

(eds). Equine Genomics. Hoboken, NJ: Wiley-Blackwell. , pp.265-284

Dr Jean-Christophe Jacquier

Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan, D. (2013) 'Conventional extraction

techniques for phytochemicals' In: Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan,

D (eds). Handbook of Phytochemicals: sources, stability and extraction. England:

Wiley-Blackwell.

Dr James Lyng

Lyng, JG; McKenna, BM (2013) 'Ohmic Pasteurisation of meat and meat products' In:

Kutz, M (eds). Handbook of Farm, Dairy and Food Machinery Engineering.

Philadelphia: Elsevier. , pp.541-570

Professor David MacHugh

Hill EW, Katz LM, MacHugh DE; (2013) 'Genomics of Performance' In: Chowdhary B

https://rms.ucd.ie/ufrs/[email protected]







(eds). Equine Genomics. Hoboken, NJ: Wiley-Blackwell. , pp.265-284

Dr Kevin McDonnell

Everard, C.D., McDonnell K and Fagan C.C. (2013) 'Environmental Impact Assessment'

In: Everard, C.D., McDonnell K and Fagan C.C (eds). Sustainable Food Processing.

London, UK: Blackwell Publishing.

Professor Maarten Nieuwenhuis

McInerney, D., Harper, C., Niewuenhuis, M., Rosengren, M., Jonsson, C. and Barrett, F.

(2012) 'Detecting forest change in Ireland using satellites' In: McInerney, D., Harper, C.,

Niewuenhuis, M., Rosengren, M., Jonsson, C. and Barrett, F (eds). The growing use of

GMES across Europe's regions. Brussels: European Space Agency. , pp.46-47

Professor Dolores O'Riordan

Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan, D. (2013) 'Conventional extraction

techniques for phytochemicals' In: Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan,

D (eds). Handbook of Phytochemicals: sources, stability and extraction. England:

Wiley-Blackwell.

aig Wims

Wims, P. (2013) 'ICTs in Agribusinesses: Opportunities for Extranet Services to Provide

Information to Farmers' In: Maumbe, B.M. and Patrikakis, C.Z (eds). E-Agriculture and

Rural Development: Global Innovations and Future Prospects. Hershey, PA, USA: IGI

Global. , pp.185-199

Back to Top

Peer Reviewed Journals

Dr Tommy Boland

Boland, T.M., Quinlan, C., Pierce, K.M., Lynch, M.B., Kelly, A.K and Purcell, P. J.

(2013) 'The effect of pasture pre-grazing herbage mass on methane emissions, ruminal

fermentation, and average daily gain of grazing beef heifers'. Journal of Animal Science,

91 :3867-3874.

Boots,B., Lillis,L., Clipson,N., Petrie,K., Kenny,D.A., Boland,T.M., and Doyle,E (2013)

'Responses of anaerobic rumen fungal diversity (phylum Neocallimastigomycota) to

changes in bovine diet'. Journal of Applied Microbiology, 114 :626-635.

Deighton, M.H., O'Loughlin, B.M., Williams, S.R.O., Moate, P.J., Kennedy, E., Boland,

T.M. and Eckard, R.J. (2013) 'Declining sulphur hexafluoride permeability of

polytetrafluoroethylene membranes causes overestimation of calculated ruminant

methane emissions using the tracer Technique'. Animal Feed Science and Technology,

183 .

O'Brien, M., Navarro-Villa, A, Purcell, P., Boland, T.M. and O'Kiely, P. (2013)

'Reducing in vitro methanogenesis for two contrasting diets using a series of inclusion

rates of eleven additives'. Animal Production Science .

O'Neill, B.F., Lewis, E., O'Donovan, M., Shalloo, L., Galvin, N., Mulligan, F.J., Boland,

T.M. and Delagarde, R. (2013) 'Predicting grass dry matter intake, milk yield and milk

fat and protein yield of spring calving grazing dairy cows during'. Animal, 7 :1379-1389.

Ganche E, Delaby L, O'Donovan M, Boland TM, Kennedy E. (2013) 'Direct and

carryover effect of post-grazing sward height on total lactation dairy cow performance'.






Animal, 7:1390-1400.

Navarro-Villa, A,O'Brien, M,Lopez, S,Boland, TM,O'Kiely, P (2013) 'In vitro rumen

methane output of grasses and grass silages differing in fermentation characteristics

using the gas-production technique (GPT)'. Grass and Forage Science, 68:228-244.

Wims, CM,McEvoy, M,Delaby, L,Boland, TM,O'Donovan, M (2013) 'Effect of

perennial ryegrass (Lolium perenne L.) cultivars on the milk yield of grazing dairy

cows'. Animal, 7 :410-421.

Boots, B,Lillis, L,Clipson, N,Petrie, K,Kenny, DA,Boland, TM,Doyle, E (2013)

'Responses of anaerobic rumen fungal diversity (phylum Neocallimastigomycota) to

changes in bovine diet'. Journal of Applied Microbiology, 114 :626-635.

O'Neill, B.F., Lewis, E., O'Donovan, M., Shalloo, L., Mulligan, F.J., Boland, T.M. and

Delagarde, R. 2013. Grass and forage Science. (2012) 'Evaluation of the GrazeIn model

of grass dry-matter intake and milk production prediction for dairy cows in temperate

grass-based production systems. 1Sward characteristics and grazing management

factors'. Grass and Forage Science.

O'Neill, B.F., Lewis, E., O'Donovan, M., Shalloo, L., Mulligan, F.J., Boland, T.M. and

Delagarde, R. (2012) 'valuation of the GrazeIn model of grass dry-matter intake and

milk production prediction for dairy cows in temperate grass-based production systems

2 Animal characteristics'. Grass and Forage Science.

Creighton, P., Gilliland, T.J., Delaby, L., Kennedy, E., Boland, T.M. and O'Donovan, M

(2012) '. Effect of Lolium perenne sward density on productivity under simulated and

actual cattle grazing'. Grass and Forage Science.

Navarro-Villa, A,O'Brien, M, Lopez, S,Boland, TM,O'Kiely, P. (2012) 'In vitro rumen

methane output of grasses and grass silages differing in fermentation characteristics

using the gas-production technique (GPT)'. Grass and Forage Science.

Dr James Breen

Clancy, D., Breen, J. P., Thorne, F. and Wallace, M. (2012) 'A stochastic analysis of the

decision to produce biomass crops in Ireland'. Biomass and Bioenergy, 46:353-365.

Dr Lorraine Brennan

Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L

(2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy

adults'. Molecular Nutrition and Food Research.

Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013)

'Identification of differential responses to an oral glucose tolerance test in healthy

adults'. PLoS ONE, 8 (8).

Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013)

'Predictive value of bovine follicular components as markers of oocyte developmental

potential'. Reproduction, fertility, and development.

Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway

SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater

physiological and performance adaptations than a threshold model in trained cyclists'.

Journal of Applied Physiology, 114 (4):461-471.

Brennan, L (2013) 'Metabolomics in nutrition research: current status and perspectives'.

Biochemical Society Transactions, 41:670-673.

Neal, CM,Hunter, AM,Brennan, L,O'Sullivan, A,Hamilton, DL,DeVito, G,Galloway,



SDR (2013) 'Six weeks of a polarized training-intensity distribution leads to greater


Journal of applied physiology (Bethesda, Md.: 1985), 114 :461-471.

Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan,

L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic

response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.

Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013)

'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'.

Clinical Interventions in Aging, 8:19-27.

Monahan FJ, Moloney AP, Osorio MT, Röhrle FT, Schmidt O and Brennan L (2012)

'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food

Science & Technology, 28 (2):69-76.

Dr John Browne

Morine MJ, Toomey S, McGillicuddy FC, Reynolds CM, Power KA, Browne JA,

Loscher C, Mills KH, Roche HM. (2013) 'Network analysis of adipose tissue gene

expression highlights altered metabolic and regulatory transcriptomic activity in high-

fat-diet-fed IL-1RI knockout mice'. Journal of Nutritional Biochemistry, 24:788-799.

Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K.

M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley,

E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA

sequence analysis of the bovine macrophage response to Mycobacterium bovis infection

in vitro'. BMC Genomics, 14 (1).

Kelly AK, Waters SM, McGee M, Browne JA, Magee DA, Kenny DA (2013)

'Expression of key genes of the somatotropic axis in longissimus dorsi muscle of beef

heifers phenotypically divergent for residual feed intake'. Journal of Animal Science, 91

(1):159-167.

Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-

Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon,

SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence

analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'.

BMC Genomics, 14.

B McGivney, J Browne, R Fonseca, D MacHugh, R Whiston, L Katz, E Hill ; (2012)

'MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression

and racetrack performance'. Animal Genetics, 43 (6).

Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A,

Baird A, Loftus BJ, Evans AC, Carrington SD. (2012) 'Molecular aspects of mucin

biosynthesis and mucus formation in the bovine cervix during the periestrous period'.

Physiological genomics.

K Pluta, PA Mc Gettigan, CJ Reid, JA Browne, JA Irwin, T Tharmalingam, T Corfield,

A Baird, BJ Loftus, AC Evans, SD Carrington. (2012) 'Molecular aspects of mucin

biosynthesis and mucin formation in the bovine cervix during periestrous period'.

Physiological genomics, 44 (42):1165-1178.





http://dx.doi.org/10.1016/j.tifs.2012.05.005

Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A,

Baird AW, Loftus BJ, Evans AC, Carrington SD (2012) 'Molecular aspects of mucin

biosynthesis and mucus formation in the bovine cervix during the periestrous period'.

Physiological genomics.

Mansouri-Attia N, Oliveira LJ, Forde N, Fahey AG, Browne JA, Roche JF, Sandra O,

Reinaud P, Lonergan P, Fair T (2012) 'Pivotal Role for Monocytes/Macrophages and

Dendritic Cells in Maternal Immune Response to the Developing Embryo in Cattle'.

Biology of Reproduction.

Walsh SW, Fair T, Browne JA, Evans AC, McGettigan PA. (2012) 'Physiological status

alters immunological regulation of bovine follicle differentiation in dairy cattle'.

JOURNAL OF REPRODUCTIVE IMMUNOLOGY.

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.

Dr Nigel Patrick Brunton

Mitchell, Michelle, Brunton, Nigel P., Wilkinson, Martin G. (2013) 'The influence of

salt taste threshold on acceptability and purchase intent of reformulated reduced sodium

vegetable soups'. Food Quality and Preference, 28 (1):356-360.

Mitchell, Michelle, Brutnon, Nigel P., Fitzgerald, Richard J., Wilkinson, Martin G.

(2013) 'The Use of Herbs, Spices, and Whey Proteins as Natural Flavor Enhancers and

Their Effect on the Sensory Acceptability of Reduced-Salt Chilled Ready-Meals'.

Journal of Culinary Science & Technology, 11 (3):222-240.

Olivia Kenny, Catherine McCarthy, Nigel Brunton, Mohammad Hossain, Dilip Rai,

Stuart Collins, Peter Jones, Anita R. Maguire, Nora M. O'Brien (2013) 'Anti-

inflammatory properties of potato glycoalkaloids in stimulated Jurkat and Raw 264.7

mouse macrophages'. Life Sciences.

Rawson, Ashish, Brunton, Nigel P, Rai, Dilip K, McLoughlin, Padraig, Tiwari, Brijesh

K, Tuohy, Maria G (2013) 'Stability of falcarinol type polyacetylenes during processing

of Apiaceae vegetables'. Trends in Food Science & Technology.

Rawson, Ashish, Hossain, Mohammad B, Patras, Ankit, Tuohy, Maria, Brunton, Nigel

(2013) 'Effect of boiling and roasting on the polyacetylene and polyphenol content of

fennel (< i> Foeniculum vulgare) bulb'. Food Research International, 50 (2):513-518.

Reilly, Kim, Cullen, Eileen, Lola-Luz, Theodora, Stone, Dorothy, Valverde, Juan,

Gaffney, Michael, Brunton, Nigel, Grant, James, Griffiths, Bryan S. (2013) 'Effect of

organic, conventional and mixed cultivation practices on soil microbial community

structure and nematode abundance in a cultivated onion crop'. Journal of the Science of

Food and Agriculture.

Reilly, Kim, Valverde, Juan, Finn, Leo, Rai, Dilip K., Brunton, Nigel, Sorensen, Jens C.,

Sorensen, Hilmer, Gaffney, Michael (2013) 'Potential of cultivar and crop management

to affect phytochemical content in winter-grown sprouting broccoli (Brassica oleracea L.

var. italica)'. Journal of the Science of Food and Agriculture.

Russo, Daniela, Kenny, Owen, Smyth, Thomas J., Milella, Luigi, Hossain, Mohammad


http://www.sciencedirect.com/science/article/pii/S0950329312002078

http://dx.doi.org/10.1080/15428052.2013.769869

http://dx.doi.org/10.1002/jsfa.6206

http://dx.doi.org/10.1002/jsfa.6263

B., Diop, Moussoukhoye Sissokho, Rai, Dilip K., Brunton, Nigel P. (2013) 'Profiling of

Phytochemicals in Tissues from Sclerocarya birrea by HPLC-MS and Their Link with

Antioxidant Activity'. ISRN Chromatography, 2013.

Tierney, MichelleS, Soler-Vila, Anna, Rai, DilipK, Croft, AnnaK, Brunton, NigelP,

Smyth, ThomasJ (2013) 'UPLC-MS profiling of low molecular weight phlorotannin

polymers in Ascophyllum nodosum, Pelvetia canaliculata and Fucus spiralis'.

Metabolomics,:1-12.

Tierney, Michelle S., Smyth, Thomas J., Hayes, Maria, Soler-Vila, Anna, Croft, Anna

K., Brunton, Nigel (2013) 'Influence of pressurised liquid extraction and solid liquid

extraction methods on the phenolic content and antioxidant activities of Irish

macroalgae'. International Journal of Food Science and Technology, 48 (4):860-869.

Brunton, Nigel P (2013) 'Thermal processing'. Handbook of Plant Food

Phytochemicals: Sources, Stability and Extraction,:247-259.

Lyng J.G., Zhang L., Marra F., , Brunton N.P. (2013) 'Effect of freezing rate and

comminution on dielectric properties of pork'. Czech Journal of Food Science, 31:413-

418.

Tiwari U, Rawson A., Valverde J., Reilly K., Brunton N. and Cummins E.* (2013) 'A

Farm- to- Fork Model to Evaluate the Level of Polyacetylenes in Processed Carrots'.

International Journal of Food Science and Technology, 48 (8):1626-1639.

Tierney, M. S., Smyth, T. J., Rai, D. K., Soler-Vila, A., Croft, A. K., Brunton, N. (2013)

'Enrichment of polyphenol contents and antioxidant activities of Irish brown macroalgae

using food-friendly techniques based on polarity and molecular size'. Food Chemistry,

139 (1-4):753-761.

Tiwari, U., Cummins E., Brunton, N., O'Donnell, C. and Gallagher E. (2013) 'A

comparison of oat flour and oat bran-based bread formulations'. British Food Journal,

115 (2):300-313.

Mireia Corell, Eimilee Sheehy Paul Evans, Nigel Brunton Juan Valverde (2013)

'Absolute Configuration of Falcarinol (9Z-heptadeca-1,9-diene-4,6-diyn-3-ol) from

Pastinaca sativa'. Natural Product Reports .

Kenny, O., Smyth, T. J., Hewage, C. M., Brunton, N. P (2013) 'Antioxidant properties

and quantitative UPLC-MS analysis of phenolic compounds from extracts of fenugreek

(Trigonella foenum-graecum) seeds and bitter melon (Momordica charantia) fruit'. Food

Chemistry, 141 (4):4295-4302.

Kenny, Olivia M. McCarthy, Catherine M. Brunton, Nigel P. Hossain, Mohammad B.

Rai, Dilip K. Collins, Stuart G. Jones, Peter W. Maguire, Anita R. O'Brien, Nora M.

(2013) 'Anti-inflammatory properties of potato glycoalkaloids in stimulated Jurkat and

Raw 264.7 mouse macrophages'. Life Sciences, 92 (13):775-782.

Keenan, D. F., Valverde, J., Gormley, R., Butler, F., Brunton, N. P. (2012) 'Selecting

apple cultivars for use in ready-to-eat desserts based on multivariate analyses of

physico-chemical properties'. LWT-Food Science and Technology, 48 (2):308-315.

Rawson, A., Tiwari, B. K., Brunton, N., Brennan, C., Cullen, P. J., O'Donnell, C. P.

(2012) 'Application of Supercritical Carbon Dioxide to Fruit and Vegetables: Extraction,

http://dx.doi.org/10.1155/2013/283462

http://dx.doi.org/10.1007/s11306-013-0584-z

http://dx.doi.org/10.1111/ijfs.12038

Processing, and Preservation'. Food Reviews International, 28 (3):253-276.

Dr Thomas Cummins

Johnson, James A; Aherne, Julian; Cummins, Thomas (2013) 'Contrasting responses of

two Sitka spruce forest plots in Ireland to reductions in sulphur emissions: results of 20

years of monitoring'. Biogeochemistry.

Dr Owen Doyle

I. H. Al Mahmooli,F. AlBalushi, O. Doyle, A. M. Al Sadi and M. L. Deadman (2013)

'First Report of Gladiolus Corm Rot Caused byFusarium proliferatum in Oman'. Plant

Disease, 97 (2):284-284.

Professor Alexander Evans

F Mossa, F Carter, SW Walsh, DA Kenny, GW Smith, P Lonergan, JLH Ireland, JJ

Ireland, ACO Evans (2013) 'Maternal undernutrition of heifers diminishes the size of

ovarian reserve and increases arterial blood pressure in the offspring'. Biology of

Reproduction, 88 (4):1-9.

MP Mullen, FW Bazer, G Wu, MH Parr, ACO Evans, MA Crowe, MG Diskin (2013)

'Effects of systemic progesterone during the early luteal phase on availabilities of amino

acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and development.

L O'Hara, N Forde, F Carter, D Rizos,V Maillo, AD Ealy, AK Kelly, P Rodriguez, N

Isaka, ACO Evans, P Lonergan (2013) 'Paradoxical effect of supplementary

progesterone between day 13 and 7 on corpus luteum function and conceptus

development in cattle'. Reproduction, fertility, and development.

SW Walsh, T Fair, JA Browne, ACO Evans, PA Gettigan (2012) 'Physiological status


JOURNAL OF REPRODUCTIVE IMMUNOLOGY, 96.

K Pluta, PA Mc Gettigan, CJ Reid, JA Browne, JA Irwin, T Tharmalingam, T Corfield,

A Baird, BJ Loftus, AC Evans, SD Carrington. (2012) 'Molecular aspects of mucin

biosynthesis and mucin formation in the bovine cervix during periestrous period'.

Physiological genomics, 44 (42):1165-1178.

Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter,

F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an

imprinted gene in cattle'. Animal Genetics, 43 (5):587-590.

Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass

dry matter intake and fat supplementation on progesterone metabolism in lactating dairy

cows'. Theriogenology, 78 (4):878-886.

Dr Alan Fahey

Diaz, J. A. Calderon, A. G. Fahey, A. L KilBride, L. E. Green, and L. A. Boyle (2013)

'Longtitudinal study of the effect of rubber slat mats on locomotory ability, limb and

leisions, and dirtiness of group housed sows'. Journal of Animal Science, 91 (8):3940-

3954.

Murphy, C., A. G. Fahey, A. Sharfat, and S. Fair (2013) 'Reducing sperm concentration

is critical to limiting the oxidative stress challenge in liquid bull sperm'. Journal of





http://dx.doi.org/10.1094/PDIS-03-12-0233-PDN

Dairy Science, 96 (7):4447-4454.

Dennis, RL,Fahey, AG,Cheng, HW (2013) 'Alterations to Embryonic Serotonin Change

Aggression and Fearfulness'. Aggressive behavior, 39:91-98.

Kiernan, M., A. G. Fahey, and S. Fair (2013) 'The effect of in vitro supplementation of

exogenous long-chained fatty acids on bovine sperm cell function'. Reproduction

Fertility and Development, 25 (6):947-954.

Fahey A.G., P. Duffy, and S. Fair (2012) 'Effect of exposing rams to a female stimulus

before semen collection on ram libido and semen quality'. Journal of Animal Science,

90:3451-3456.





Dr Trudee Fair












Walsh SW, Fair T, Browne JA, Evans AC, McGettigan PA. (2012) 'Physiological status


JOURNAL OF REPRODUCTIVE IMMUNOLOGY.

Dr Angela Feechan

Ayliffe M., Periyannan S., Feechan A., Dry I., Schumann U., Wang M.B., Pryor T.,

Lagudah E. (2013) 'A simple method for comparing fungal biomass in infected plant

tissues'. Molecular Plant-Microbe Interactions.

Feechan A., Jermakow A.M., Ivancevic A., Godfrey D., Pak. H., Panstruga R., Dry I.B.

(2013) 'Host cell entry of powdery mildew is correlated with endosomal transport of

antagonistically acting VvPEN1 and VvMLO to the papilla'. Molecular Plant-Microbe

Interactions.

Dr Niamh Forde





Beltman ME, Forde N, Lonergan P, Crowe MA (2012) 'Altered endometrial immune

gene expression in beef heifers with retarded embryos'. Reproduction, fertility, and

development.




Forde N, Mehta JP, Minten M, Crowe MA, Roche JF, Spencer TE, Lonergan P (2012)

'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of

Reproduction.

Forde N, Carter F, di Francesco S, Prakash Mehta J, Garcia-Herreros M, Gad AY,

Tesfaye D, Hoelker M, Schellander K, Lonergan P (2012) 'Endometrial response of beef

heifers on Day 7 following insemination to supra-physiological concentrations of

progesterone associated with superovulation'. Genomics.

Dr Eileen Gibney




O'Brien, S.A., Feeney, E.L., Scannell, A.G.M., Markey, A., Gibney, E.R. (2013) 'Bitter

taste perception and dietary intake patterns in Irish children'. Journal Of Nutrigenetics

And Nutrigenomics, 6 (1):43-58.




Drummond EM and Gibney ER (2013) 'Epigenetic regulation in obesity'. Current

Opinion in Clinical Nutrition and Metabolic Care, 16 (4):392-397.

Forte R, Pesce C, Leite JC, De Vito G, Gibney ER, Tomporowski PD, Boreham CA.

(2013) 'Executive function moderates the role of muscular fitness in determining

functional mobility in older adults'. Aging Clin Exp Res, 25 (3):291-298.

Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013)

'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'.

Clinical Interventions in Aging, 8:19-27.

Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan,

L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic

response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.

Drummond, EM,Harbourne, N,Marete, E,Martyn, D,Jacquier, JC,O'Riordan, D,Gibney,

ER (2013) 'Inhibition of Proinflammatory Biomarkers in THP1 Macrophages by

Polyphenols Derived From Chamomile, Meadowsweet and Willow bark'. Phytotherapy

research: PTR, 27 :588-594.

O'Brien, SA,Feeney, EL,Scannell, AGM,Markey, A,Gibney, ER (2013) 'Bitter Taste

Perception and Dietary Intake Patterns in Irish Children'. Journal Of Nutrigenetics And

Nutrigenomics, 6:43-58.

Professor Mike Gibney




Martyn DM, McNulty BA, Nugent AP, Gibney MJ (2013) 'Food additives and preschool

children. Proc Nutr Soc. 2013 Feb;72(1):109-16'. Proceedings of the Nutrition Society,

72 (1):109-116.

Gibney MJ, Walsh MC. The future direction of personalised nutrition: my diet, my

phenotype, my genes. Proc Nutr Soc. 2013 Jan 30:1-7. (2013) 'The future direction of

personalised nutrition: my diet, my phenotype, my genes'. Proceedings of the Nutrition



Society, 30:1-7.

Devlin NF, McNulty BA, Gibney MJ, Thielecke F, Smith H, Nugent AP (2012) 'Whole

grain intakes in the diets of Irish children and teenagers'. British Journal of Nutrition.

Dr Olga Grant

Grant, OM (2012) 'Thermography in Viticulture'. Thermology International, 22:16-24.

Grant, OM; Davies MJ; Johnson AW, Simpson DW (2012) 'Physiological and growth

responses to water deficits in cultivated strawberry Fragaria x ananassa and in one of its

progenitors, Fragaria chiloensis'. Environmental and Experimental Botany, 83:23-32.

Dr Emmeline Hill

Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro,

B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S.,

Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the

tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on

chromosomes 3 and 10'. Anim Genet, 44 (4):408-12.

Moridi, M,Masoudi, AA,Torshizi, RV,Hill, EW (2013) 'Mitochondrial DNA D-loop

sequence variation in maternal lineages of Iranian native horses'. Animal Genetics,

44:209-213.

Dr Alan Hunter

Buckley, M., Gaffney, M.and Hunter, A. (2012) 'Nutrient Release Rate of Compost on

USGA Specification Golf green'. Acta Horticulturae, 938:145-152.

G. McMahon and A.Hunter (2012) 'Turf quality and growth suppression of Agrostis

stolonifera PennA4 with plant growth regulators and various fertiliser rates'. Acta

Horticulturae, 938:129-136.

Butler, T., Mwabadaba, K. and Hunter, A. (2012) 'The Influence of Nutrient leaching

from a USGA Golf Green during the Grow-in Year'. Acta Horticulturae, 938:161-168.

Gallone, A., Hunter, A. and Douglas, G.C. (2012) 'Multiplication rates in long term

cultures of four cultivars of Hebe'. Propagation of Ornamental Plants, 12 (3):178-183.

Dr Jean-Christophe Jacquier

Egan, T.a b and Jacquier, J.-C.a and Rosenberg, Y.b and Rosenberg, M.b (2013) 'Cold-

set whey protein microgels for the stable immobilization of lipids'. Food Hydrocolloids,

31 (2):317-324.

Harbourne, N. and Marete, E. and Jacquier, J.C. and O'Riordan, D. (2013) 'Stability of

phytochemicals as sources of anti-inflammatory nutraceuticals in beverages - A review'.

Food Research International, 50 (2):480-486.

Marete, E.N. and Jacquier, J.-C. and O'Riordan, D. (2013) 'Effect of processing

temperature on the stability of parthenolide in acidified feverfew infusions'. Food

Research International, 50 (2):593-596.

Drummond, E.M. and Harbourne, N. and Marete, E. and Martyn, D. and Jacquier, J.C.

and O'Riordan, D. and Gibney, E.R. (2013) 'Inhibition of proinflammatory biomarkers

in THP1 macrophages by polyphenols derived from chamomile, meadowsweet and





http://www.scopus.com/inward/record.url?eid=2-s2.0-84870815649&partnerID=40&md5=668f455d953447e47b2ad284c17c6f6c

http://www.scopus.com/inward/record.url?eid=2-s2.0-84874355699&partnerID=40&md5=e4a4aaa76d0c64dfd9ad5dae067bcbb3

http://www.scopus.com/inward/record.url?eid=2-s2.0-84874360619&partnerID=40&md5=5c8d3007d14b1640911c46a93be74577

willow bark'. Phytotherapy Research, 27 (4):588-594.

Dr Alan Kelly





Dr James Kinsella

Thomas Carroll and Jim Kinsella (2013) 'Livelihood improvement and smallholder

beekeeping in Kenya: the unrealised potential'. Development in Practice, 23 (3):332-

345.

Professor Patrick Lonergan

Forde N, Mehta JP, McGettigan PA, Mamo S, Bazer FW, Spencer TE, Lonergan P

(2013) 'Alterations in expression of endometrial genes coding for proteins secreted into

the uterine lumen during conceptus elongation in cattle'. Genomics, 14.

Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The

Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'.

Reproduction in domestic animals = Zuchthygiene, 48:888-892.

Maillo V, Duffy P, O'Hara L, de Frutos C, Kelly AK, Lonergan P, Rizos D (2013)

'Effect of hCG administration during corpus luteum establishment on subsequent corpus

luteum development and circulating progesterone concentrations in beef heifers'.

Reproduction, fertility, and development .




Mossa, F,Carter, F,Walsh, SW,Kenny, DA,Smith, GW,Ireland, JLH,Hildebrandt,

TB,Lonergan, P,Ireland, JJ,Evans, ACO (2013) 'Maternal Undernutrition in Cows

Impairs Ovarian and Cardiovascular Systems in Their Offspring'. Biology of

Reproduction, 88.

Spencer TE, Forde N, Dorniak P, Hansen TR, Romero JJ, Lonergan P (2013)

'Conceptus-derived prostaglandins regulate gene expression in the endometrium prior to

pregnancy recognition in ruminants'. Reproduction (Cambridge, England), 146 (4):377-

387.

Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012)


Reproduction, 87 (5):124, 1-11.

Beltman ME, Forde N, Lonergan P, Crowe MA. (2012) 'Altered endometrial immune

gene expression in beef heifers with retarded embryos'. Reproduction Fertility and

Development.




Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A,

Waters SM, Machugh DE, Spillane C (2012) 'PHLDA2 is an imprinted gene in cattle'.




http://www.scopus.com/inward/record.url?eid=2-s2.0-84876292213&partnerID=40&md5=28ea9caf8d375b8826718b5a564e5bde

Animal Genetics, 43 (5):587-590.

Beltman ME, Forde N, Lonergan P, Crowe MA (2012) 'Altered endometrial immune

gene expression in beef heifers with retarded embryos'. Reproduction, fertility, and

development.

Forde N, Mehta JP, Minten M, Crowe MA, Roche JF, Spencer TE, Lonergan P (2012)


Reproduction.

Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan,

FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development

in beef heifers'. Animal Reproduction Science, 133 (3):139-145.

Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass

dry matter intake and fat supplementation on progesterone metabolism in lactating dairy

cows'. Theriogenology, 78 (4):878-886.

Forde N, Carter F, di Francesco S, Prakash Mehta J, Garcia-Herreros M, Gad AY,

Tesfaye D, Hoelker M, Schellander K, Lonergan P (2012) 'Endometrial response of beef

heifers on Day 7 following insemination to supra-physiological concentrations of

progesterone associated with superovulation'. Genomics.

Mamo S, Rizos D, Lonergan P (2012) 'Transcriptomic changes in the bovine conceptus

between the blastocyst stage and initiation of implantation'. Animal Reproduction

Science, 134 (1-2):56-63.





Dr James Lyng

Lyng J.G., Zhang L., Marra F., Brunton N.P. (2013) 'Effect of freezing rate and

comminution on dielectric properties of pork'. Czech Journal of Food Science, 31:413-

418.

Halpin, R.M., Cregenzan-Alberti, O., Whyte, P., Lyng, J.G., Noci, F. (2013) 'Combined

treatment with mild heat, manothermosonication and pulsed electric fields reduces

microbial growth in milk'. Food Control, 34:364-371.

Haughton, P.N., Lyng, J., Fanning, S., Whyte, P. (2013) 'Potential of a commercially

available water acidification product for reducing Campylobacter in broilers prior to

slaughter'. Poultry Science, 54:319-324.

McDonnell, C.K., Allen, P., Duggan, E., Arimi, J.M., Casey, E., Duane, G. & Lyng, J.G

(2013) 'The effect of salt and fibre direction on water dynamics, distribution and

mobility in pork muscle: A low field NMR study'. Meat Science, 95:51-58.

O'Dowd, LP; Arimi, JM; Noci, F; Cronin, DA; Lyng, JG (2013) 'An assessment of the

effect of pulsed electrical fields on tenderness and selected quality attributes of post

rigour beef muscle'. Meat Science, 93 (2):303-309.

Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2012)

'Susceptibility of Campylobacter to high intensity near ultraviolet/visible 3955nm light

and its effectiveness for the decontamination of raw chicken and contact surfaces'.

International Journal of Food Microbiology, 159 (3):267-273.

Professor David MacHugh



Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro,

B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S.,

Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the

tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on

chromosomes 3 and 10'. Anim Genet, 44 (4):408-12.

Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K.

M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley,

E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA

sequence analysis of the bovine macrophage response to Mycobacterium bovis infection

in vitro'. BMC Genomics, 14 (1).




Hill, Emmeline W., Ryan, Donal P., MacHugh, David E. (2012) 'Horses for Courses: a

DNA-based Test for Race Distance Aptitude in Thoroughbred Racehorses'. Recent

patents on DNA & gene sequences, 6 (3):203-8.




Waters, Sinead M., Coyne, Gerard S., Kenny, David A., MacHugh, David E., Morris,

Dermot G. (2012) 'Dietary n-3 polyunsaturated fatty acid supplementation alters the

expression of genes involved in the control of fertility in the bovine uterine

endometrium'. Physiological Genomics, 44 (18):878-888.

Dr David Magee

Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A,

Waters SM, Machugh DE, Spillane C (2012) 'PHLDA2 is an imprinted gene in cattle'.

Animal Genetics, 43 (5):587-590.

Dr Kevin McDonnell

Murphy, F., Devlin, G. and McDonnell, K; (2013) 'The Evaluation Of Flash Point And

Cold Filter Plugging Point With Blends Of Diesel And Cyn-Diesel Pyrolysis Fuel For

Automotive Engines'. the open fuels and energy science journal, 6 :1-8.

Devlin, G. Klvac, R. and McDonnell, K; (2013) 'Fuel efficiency and CO2 emissions of

biomass based haulage in Ireland - A case study'. Energy, 54:55-62.

Galbally, P,Ryan, D,Fagan, CC,Finnan, J,Grant, J,McDonnell, K (2013) 'Biosolid and

distillery effluent amendments to Irish short rotation coppiced willow plantations:

Impacts on groundwater quality and soil'. Agricultural Water Management, 116:193-

203.

Henihan, AM,Bowen, B,Lynch, D,McDonnell, K,Kwapinski, W,Leahy, JJ (2013)

'Utilisation of poultry litter as an energy feedstock'. BIOMASS & BIOENERGY, 49:197-

204.

Dr Barry John McMahon

McMahon, B.J., Carnus, T. & Whelan, J. (2013) 'A comparison of winter bird




communities in agricultural grassland and cereal habitats in Ireland: implications for

Common Agricultural Policy reform'. Bird Study, 60 (2):176-184.

McMahon, B.J., Copland, A.S., Kirwan, L. Purvis, G. & Whelan, J. (2012) 'Survey

evaluation for species richness of farmland birds'. Irish Birds, 9:361-366.

Buckley, K., Kelly, P., Kavanagh, K. O'Gorman, E.C., Carnus, T. & McMahon, B.J.

(2012) 'Every partridge counts, successful techniques used in the captive conservation

breeding programme for wild grey partridge in Ireland'. Animal Biodiversity and

Conservation, 35:387-393.

Dr Breige McNulty

Martyn DM, McNulty BA, Nugent AP, Gibney MJ (2013) 'Food additives and preschool

children'. Proceedings of the Nutrition Society.

Breige McNulty, Helene McNulty, Barry Marshall, Mary Ward, Anne M Molloy, John

M Scott, James Dornan, and Kristina Pentieva (2013) 'Impact of continuing folic acid

after the first trimester of pregnancy:findings of a randomized trial of Folic Acid

Supplementation in the Second and Third Trimesters'. American Journal of Clinical

Nutrition.

Professor Frank Monahan

Contini C, lvarez, R, O'Sullivan M, Dowling D, Gargan S, and Monahan FJ. (2013)

'Effect of an active packaging with Citrus extract on lipid oxidation and sensory quality

of cooked turkey meat'. Meat Science.

Contini C, Valzacchi S, O'Sullivan M, Simoneau C, Dowling DP and Monahan FJ

(2013) 'Overall Migration and Kinetics of Release of Antioxidant Compounds from

Citrus Extract-Based Active Packaging'. Journal of Agricultural and Food Chemistry.

Luciano, G,Pauselli, M,Servili, M,Mourvaki, E,Serra, A,Monahan, FJ,Lanza, M,Priolo,

A,Zinnai, A,Mele, M (2013) 'Dietary olive cake reduces the oxidation of lipids,

including cholesterol, in lamb meat enriched in polyunsaturated fatty acids'. Meat Sci,

93:703-714.

Monahan, F.J., Moloney, A.P., Osorio, M.T., Röhrle, F.T., Schmidt, O. and Brennan, L.

(2012) 'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in

Food Science & Technology, 28 (2):69-76.

Dr Barbara Murphy

Murphy, BA; Walsh, CM; Woodward, EM; Prendergast, RL; Ryle, JP; Fallon, LH;

Troedsson, MH. (2013) 'Blue light from individual light masks directed at a single eye

advances the breeding season in mares'. Equine Veterinary Journal.

Hession CE, Eastwood B, Watterson D, Lehane CM, Oxley N, Murphy BA (2013)

'Therapeutic Horse Riding Improves Cognition, Mood Arousal, and Ambulation in

Children with Dyspraxia'. Journal of alternative and complementary medicine (New

York, N.Y.).

CM Walsh, RL Prendergast, JT Sheridan, BA Murphy (2012) 'Blue light from light-




http://www.tandfonline.com/doi/abs/10.1080/00063657.2012.758227

http://abc.museucienciesjournals.cat/files/ABC_35-2_pp_387-393.pdf

http://dx.doi.org/10.1016/j.meatsci.2013.11.007

http://dx.doi.org/10.1021/jf402620b



emitting diodes directed at a single eye elicits a dose-dependent suppression of

melatonin in horses'. The Veterinary Journal.

LM Watts, JA Browne, BA Murphy (2012) 'Investigation of a non-invasive method of

assessing the equine circadian clock using hair follicle cells'. Journal of circadian

rhythms, 10 (7).

Dr Aine Ni Dhubhain

Duesberg, S., O'Connor, D/. Ni Dhubhain A (2013) 'To plant or not to plant: Irish

Farmers goals and values with regard to affrestation'. Land Use Policy, 32:155-164.

Duesberg, S,O'Connor, D,Ni Dhubhain, A (2013) 'To plant or not to plant-Irish farmers'

goals and values with regard to afforestation'. Land Use Policy, 32:155-164.


McCullagh, A., Broad, L. and Nieuwenhuis, M. (2013) 'A comparison of two yield

forecasting methods used in Ireland'. Irish Forestry.

Nieuwenhuis, M., Hendrick, E. and Phillips, H. (2013) 'Forestry and a low carbon

economy - a background paper'. Irish Forestry.

Mengesha, T., Nieuwenhuis, M. and Hawkins, M. (2013) 'Horizontal occlusion effects

in forest inventory using terrestrial LiDAR'. Earthzine.

Sah, S., Olajuyigbe, S., Tobin, B., Mäkipää1, R., Laiho1, R., Helmisaari, H. and

Nieuwenhuis, M. (2013) 'Do isotopic (13C and 15N) patterns in decomposing stump-

coarse root systems reveal variable sources of C and N?'. Forest Ecology and

Management.

Meijer, S., Catacutan, D., Ajayi, O., Sileshi, G. and Nieuwenhuis, M. (2013) 'The role of

knowledge, attitudes and perceptions in the uptake of new technologies among

smallholder farmers in Africa: a conceptual framework for adoption of agricultural

innovations'. Journal of Sustainable Agriculture.

Gómez-García, E., Crecente-Campo, F., Tobin, B., Hawkins, M., Nieuwenhuis, M. and

Diéguez-Aranda, U. (2013) 'A dynamic volume and biomass growth model system for

even-aged downy birch stands in south-western Europe'. Forestry.

Olajuyigbe, S., Tobin, B. and Nieuwenhuis, M. (2013) 'Mass loss, C, N concentrations

and C: N ratios of decomposing brash in a managed Sitka spruce forest'. Forest Ecology

and Management.

Olajuyigbe, S., Tobin, B. and Nieuwenhuis, M. (2012) 'Temperature and moisture

effects on respiration rate of decomposing logs in a Sitka spruce plantation in Ireland'.

Forestry, 85 (4):485-496.

McMullin, S., Phelan, J., Jamnadass, R., Iiyama, M., Franzel, S. and Nieuwenhuis, M.

(2012) 'Trade in medicinal tree and shrub products in three urban centres in Kenya'.

Forests, Trees and Livelihoods, 21 (3):188-206.

Dr Anne Nugent

Martyn DM, McNulty BA, Nugent AP, Gibney MJ. (2013) 'Food additives and

preschool children'. Proceedings of the Nutrition Society, 72 (109).

Devlin NF, McNulty BA, Gibney MJ, Thielecke F, Smith H, Nugent AP (2013)

'Wholegrain intakes in the diets of Irish children and teenagers'. British Journal of

Nutrition, 110 (2):354-362.

Devlin UM, McNulty BA, Nugent AP, Gibney MJ. (2012) 'The use of cluster analysis to




derive dietary patterns: methodological considerations, reproducibility, validity and the

effect of energy mis-reporting'. Proceedings of the Nutrition Society.

Mr Alan O'Doherty

Bojlul Bahar, John V. O'Doherty, Alan M. O'Doherty, Torres Sweeney (2013) 'Chito-

Oligosaccharide Inhibits the De-Methylation of a CpG Island within the Leptin (LEP)

Promoter during Adipogenesis of 3T3-L1 Cells'. PLoS ONE.

Professor John O'Doherty

Walsh, Ann M and Sweeney, Torres and Bahar, Bojlul and O'Doherty, John V (2013)

'Multi-functional roles of chitosan as a potential protective agent against obesity'. PLoS

ONE, 8 (1).

Bahar, Bojlul and O'Doherty, John V and O'Doherty, Alan M and Sweeney, Torres

(2013) 'Chito-Oligosaccharide Inhibits the De-Methylation of a CpG Island within the

Leptin (LEP) Promoter during Adipogenesis of 3T3-L1 Cells'. PLoS ONE, 8 (3).

Hamill, Ruth M and Aslan, Ozlem and Mullen, Anne M and O'Doherty, John V and

McBryan, Jean and Morris, Dermot G and Sweeney, Torres (2013) 'Transcriptome

analysis of porcine M. semimembranosus divergent in intramuscular fat as a

consequence of dietary protein restriction'. BMC Genomics, 14 (1).

Murphya, Padraigin and Bello, Fabio Dal and O'Doherty, John and Arendt, Elke K and

Sweeney, Torres and Coffey, Aidan (2013) 'The effects of liquid< i> versus spray-

dried< i> Laminaria digitata extract on selected bacterial groups in the piglet

gastrointestinal tract (GIT) microbiota'. Anaerobe.

Murphy, P and Dal Bello, F and O'Doherty, J and Arendt, EK and Sweeney, T and

Coffey, A (2013) 'Analysis of bacterial community shifts in the gastrointestinal tract of

pigs fed diets supplemented with $\beta$-glucan from Laminaria digitata, Laminaria

hyperborea and Saccharomyces cerevisiae'. animal, :1-9.

Moroney, NC and O'Grady, MN and O'Doherty, JV and Kerry, JP (2013) 'Effect of a

brown seaweed (< i> Laminaria digitata) extract containing laminarin and fucoidan on

the quality and shelf-life of fresh and cooked minced pork patties'. Meat science.

Walsh, AM and Sweeney, T and O'Shea, CJ and Doyle, DN and O'Doherty, JV and

others (2013) 'Effect of dietary laminarin and fucoidan on selected microbiota, intestinal

morphology and immune status of the newly weaned pig'. Br J Nutr, 26:1-9.

Leliveld, LMC and Riemensperger, AV and Gardiner, GE and O'Doherty, JV and

Lynch, PB and Lawlor, PG (2013) 'Effect of weaning age and postweaning feeding

programme on the growth performance of pigs to 10 weeks of age'. Livestock Science.

Murphy P, Dal Bello F, O'Doherty J, Arendt EK, Sweeney T, Coffey A (2013) 'Analysis

of bacterial community shifts in the gastrointestinal tract of pigs fed diets supplemented

with β-glucan from Laminaria digitata, Laminaria hyperborea and Saccharomyces

cerevisiae'. Animal, 7 (7):1079-1087.

Murphya P, Dal Bello F, O'Doherty J, Arendt EK, Sweeney T, Coffey A (2013) 'The

effects of liquid versus spray-dried Laminaria digitata extract on selected bacterial

groups in the piglet gastrointestinal tract (GIT) microbiota'. Anaerobe, 21:1-8.

O'Shea, CJ and Sweeney, T. and Bahar, B. and Ryan, MT and Thornton, K. and

O'Doherty, JV (2012) 'Indices of gastrointestinal fermentation and manure emissions of

growing-finishing pigs as influenced through singular or combined consumption of

Lactobacillus plantarum and inulin'. Journal of Animal Science, 90 (11):3848-3857.



http://tinyurl.com/cv4lo3w

Murphy, P. and Bello, F.D. and O'Doherty, J. and Arendt, E.K. and Sweeney, T. and

Coffey, A. (2012) 'Effects of cereal beta-glucans and enzyme inclusion on the porcine

gastrointestinal tract microbiota'. Anaerobe.

Dr Conor O'Reilly

Afroze, F. and O'Reilly, C. (2013) 'Breaking seed dormancy in European seeds and its

implications for regeneration'. New Forests, 44 (4):547-557.


Harbourne, N. and Marete, E. and Jacquier, J.C. and O'Riordan, D. (2013) 'Stability of

phytochemicals as sources of anti-inflammatory nutraceuticals in beverages - A review'.

Food Research International, 50 (2):480-486.

Marete, EN,Jacquier, JC,O'Riordan, D (2013) 'Effect of processing temperature on the

stability of parthenolide in acidified feverfew infusions'. Food Research International,

50:593-596.

Drummond, EM,Harbourne, N,Marete, E,Martyn, D,Jacquier, JC,O'Riordan, D,Gibney,

ER (2013) 'Inhibition of Proinflammatory Biomarkers in THP1 Macrophages by

Polyphenols Derived From Chamomile, Meadowsweet and Willow bark'. Phytotherapy

research: PTR, 27:588-594.

Dr Aifric O'Sullivan

O'Sullivan A, Armstrong P, Schuster GU, Pedersen TL, Allayee H, Stephensen CB,

Newman JW (2013) 'Habitual Diets Rich in Dark-Green Vegetables Are Associated

with an Increased Response to omega-3 Fatty Acid Supplementation in Americans of

African Ancestry'. Journal of Nutrition.

O'Sullivan A, He X, McNiven EM, Haggarty NW, Lönnerdal B, Slupsky CM (2013)

'Early diet impacts infant rhesus gut microbiome, immunity, and metabolism'. Journal of

Proteome Research, 12 (6):2833-2845.

O'Sullivan A, He X, McNiven EM, Hinde K, Haggarty NW, Lonnerdal B, Slupsky CM

(2013) 'Metabolomic phenotyping validates the infant Rhesus Monkey as a model of

human infant metabolism'. Journal of Pediatric Gastroenterology and Nutrition, 56

(4):355-63.

Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway

SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater


Journal of Applied Physiology, 114 (4):461-471.

O'Sullivan A, Willoughby RE, Mishchuk D, Alcarraz B, Cabezas-Sanchez C, Condori

RE, David D, Encarnacion R, Fatteh N, Fernandez J, Franka R, Hedderwick S,

McCaughey C, Ondrush J, Paez-Martinez A, Rupprecht C, Velasco-Villa A, Slupsky

CM (2012) 'Metabolomics of cerebrospinal fluid from humans treated for rabies'.

Journal of Proteome Research.

Mr Mick O'Sullivan

Contini C, lvarez, R, O'Sullivan M, Dowling D, Gargan S, and Monahan FJ. (2013)

'Effect of an active packaging with Citrus extract on lipid oxidation and sensory quality

of cooked turkey meat'. Meat Science.





http://www.scopus.com/inward/record.url?eid=2-s2.0-84874355699&partnerID=40&md5=e4a4aaa76d0c64dfd9ad5dae067bcbb3


Contini C, Valzacchi S, O'Sullivan M, Simoneau C, Dowling DP and Monahan FJ

(2013) 'Overall Migration and Kinetics of Release of Antioxidant Compounds from

Citrus Extract-Based Active Packaging'. Journal of Agricultural and Food Chemistry.

Dr Karina Pierce

Boland, T.M., Quinlan, C., Pierce, K.M., Lynch, M.B., Kelly, A.K and Purcell, P. J.


fermentation, and average daily gain of grazing beef heifers'. Journal of Animal Science,

91:3867-3874.

T. M. Boland, C. Quinlan, K. M. Pierce, M. B. Lynch, A. K. Kelly and P. J. Purcell


fermentation, and average daily gain of grazing beef heifers'. Livestock Science.

McDonald, R., L. Shalloo, K.M. Pierce, B. Horan. 2013 (2013) 'Evaluating expansion

strategies for start-up European Union dairy farm businesses'. Journal of Dairy Science.

Whelan, S. J., Mulligan, F. J., Callan, J. J., Flynn, B., Pierce, K. M. (2013) 'Effect of

forage source and a supplementary methionine hydroxyl analogue on rumen

fermentation parameters in lactating dairy cows offered a low crude protein diet'. Animal

Feed Science and Technology, 183:62-66.

Al Ibrahim, R. M., Whelan, S. J., Pierce, K. M., Campion, D. P., Gath, V. P., Mulligan,

F. J. (2013) 'Effect of timing of post-partum introduction to pasture and supplementation

with Saccharomyces cerevisiae on milk production, metabolic status, energy balance and

some reproductive parameters in early lactation dairy cows'. Journal Of Animal

Physiology And Animal Nutrition, 97:105-114.

McDonald, R., K.M. Pierce, R. Fealy, B. Horan (2013) 'Characteristics, intentions and

expectations of new entrant dairy farmers entering the Irish dairy industry through the

New Entrant Scheme'. International Journal of Agricultural Management.

B. McCarthy, L.Delaby, K.M Pierce, A. Brennan and B.Horan (2013) 'The effect of

stocking rate and calving date on milk production of Holstein Friesian dairy cows'.

Livestock Science.

Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Hepp, S., Lanigan, G. and Mc Cabe,

T. (2012) 'Gaseous emissions of methane and carbon dioxide following land application

of high and low nitrogen pig manures to winter wheat at three key crop growth stages'.

Journal of Agricultural Science.

Professor Alan Renwick

Mofakkarul Islam, M, Renwick, Alan, Lamprinopoulou, Chrysa, Klerkx, Laurens (2013)

'Innovation in Livestock Genetic Improvement'. EuroChoices, 12 (1):42-47.

Renwick, Alan, Jansson, Torbjorn, Verburg, Peter H, Revoredo-Giha, Cesar, Britz,

Wolfgang, Gocht, Alexander, McCracken, Davy (2013) 'Policy reform and agricultural

land abandonment in the EU'. Land Use Policy, 30 (1):446-457.

Revoredo-Giha, C., G. Philippidis, L. Toma and A. Renwick (2013) 'The Impact of EU

Export Refunds on the African Continent: An Impact Assessment'. Journal Of

Development Studies, 100 (1):1-25.

Islam, M.M, Renwick, A.W, Lamprinopoulou, C, Klerkx, L (2013) 'Innovation in

Livestock Genetic Improvement'. Eurochoices, 12 (1):42-46.



http://dx.doi.org/10.1021/jf402620b

http://n/a

Renwick, A; Jansson, T; Verburg, P; Revoredo-Giha, C; Britz, W; Gocht, A;

McCracken, D (2013) 'Policy Reform and Agricultural Land Abandonment in the EU'.

Land Use Policy, 30:446-457.

Dr Miriam Ryan




Dr Amalia Scannell

Crofton, E.C., Markey, A., Scannell, A.G.M. (2013) 'Consumers' expectations and needs

towards healthy cereal based snacks: An exploratory study among Irish adults'. British

Food Journal, 115 (8):1130--1148.

O'Brien, S.A., Feeney, E.L., Scannell, A.G.M., Markey, A., Gibney, E.R. (2013) 'Bitter

taste perception and dietary intake patterns in Irish children'. Journal Of Nutrigenetics

And Nutrigenomics, 6 (1):43-58.

Ktenioudaki, A., Crofton, E., Scannell, A.G.M., Hannon, J.A., Kilcawley, K.N.,

Gallagher, E. (2013) 'Sensory properties and aromatic composition of baked snacks

containing brewer's spent grain'. Journal of cereal science, 57 (3):384-390.

Feng, Y.-Z., Elmasry, G., Sun, D.-W., Scannell, A.G.M., Walsh, D., Morcy, N. (2013)

'Near-infrared hyperspectral imaging and partial least squares regression for rapid and

reagentless determination of Enterobacteriaceae on chicken fillets'. Food Chemistry, 138

(2-3):1829--1836.

Dr Olaf Schmidt

Osorio MT, Downey G, Moloney AP, Röhrle FT, Luciano L, Schmidt O, Monahan FJ

(2013) 'Beef authentication using dietary markers: Chemometric selection and modelling

of significant beef biomarkers using concatenated data from multiple analytical

methods'. Food Chemistry, 141:2795-2801.

Keith AM and Schmidt O (2013) 'First record of the earthworm Prosellodrilus

amplisetosus (Oligochaeta: Lumbricidae) outside continental Europe'. Irish Naturalists'

Journal, 32 (1):26-28.

Andriuzzi, W. S., Bolger, T. and Schmidt, O. (2013) 'The drilosphere concept: Fine-

scale incorporation of surface residuederived N and C around natural Lumbricus

terrestris burrows'. Soil Biology and Biochemistry, 64 :136-138.

Roarty, S. and Schmidt, O. (2013) 'Permanent and new arable field margins support

large earthworm communities but do not increase in-field populations'. Agriculture,

Ecosystems and Environment, 170:45-55.

Monahan FJ, Moloney AP, Osorio MT, Röhrle FT, Schmidt O and Brennan L (2012)

'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food

Science & Technology, 28 (2):69-76.

Melody, C. and Schmidt, O. (2012) 'Northward range extension of an endemic soil

decomposer with a distinct trophic position'. Biology Letters, 8 (6):956-959.




http://dx.doi.org/10.1016/j.foodchem.2013.05.118

http://dx.doi.org/10.1016/j.agee.2013.02.011


http://dx.doi.org/10.1098/rsbl.2012.0537

Dr Brian Tobin

Olajuyigbe, S., Tobin, B. and Nieuwenhuis, M. (2012) 'Temperature and moisture

effects on respiration rate of decomposing logs in a Sitka spruce plantation in Ireland'.

Forestry, 85 (4):485-496.

Dr Tatiana Vinardell

Sheehy E, Vinardell T, Buckley CT, Kelly DJ (2013) 'Engineering osteochondral

constructs through spatial regulation of endochondral ossification'. Acta biomaterialia .

Haugh MG, Thorpe SD, Vinardell T, Buckley CT, Kelly DJ. (2012) 'The application of

plastic compression to modulate fibrin hydrogel mechanical properties'. Journal of the

Mechanical Behavior of Biomedical Materials.

Dr Michael Wallace

Davis, J., Caskie, P., Wallace, M. (2013) 'Promoting structural adjustment in agriculture:

The economics of New Entrant Schemes for farmers'. Food, 40:90-96.

Ashfield, A,Crosson, P,Wallace, M (2013) 'Simulation modelling of temperate grassland

based dairy calf to beef production systems'. Agricultural Systems, 115:41-50.

Clancy, D., Breen, J. P., Thorne, F. and Wallace, M. (2012) 'A stochastic analysis of the

decision to produce biomass crops in Ireland'. Biomass and Bioenergy, 46:353-365.

Dr Stephen Whelan

Whelan, S. J., Mulligan, F. J., Callan, J. J., Flynn, B., Pierce, K. M. (2013) 'Effect of

forage source and a supplementary methionine hydroxyl analogue on rumen

fermentation parameters in lactating dairy cows offered a low crude protein diet'. Animal

Feed Science and Technology, 183:62-66.

Whelan, S.J., F.J. Mulligan, V.P. Gath, B. Flynn and K.M. Pierce (2013) 'Dietary crude

protein and starch content affects energy balance in early lactation dairy cows'. Journal

of Dairy Science.

Al Ibrahim, R. M., Whelan, S. J., Pierce, K. M., Campion, D. P., Gath, V. P., Mulligan,

F. J. (2013) 'Effect of timing of post-partum introduction to pasture and supplementation

with Saccharomyces cerevisiae on milk production, metabolic status, energy balance and

some reproductive parameters in early lactation dairy cows'. Journal Of Animal

Physiology And Animal Nutrition, 97:105-114.

Back to Top

Other Journals

Dr Mary Forrest

Forrest, Mary (2013) 'RHSI History: Prizes for Plots and produce' The Journal Royal

Horticultural Society of Ireland, New Series 5 (1):18-18.


Tobin, B. and Nieuwenhuis, M. (2012) 'The importance of long-term monitoring of

forest growth and climate in Ireland' Forestry and Energy Review, 2 (2):34-35.

Dr Conor O'Reilly

Harper, C. and O'Reilly, C. (2013) 'Tree improvement - The long-term option for

improved forest productivity and timber quality in Ireland' Forestry and Energy Review.








Dr Karina Pierce

Whelan, S. J., Mulligan, F. J., Pierce, K. M (2013) 'Nitrogen efficiency in contrasting

dairy production systems' Advances in Animal Biosciences.

Pierce, K. M., Al Ibrahim, R. M., Palladino, R. A., Whelan, S. J., Mulligan, F. J. (2013)

'Short Communication: Effect of timing of introduction to pasture post calving and

supplementation with Saccharomyces cerevisiae on milk fatty acid profiles in early

lactation dairy cows' Food and Nutritional Sciences .

Dr Olaf Schmidt

Boots B, Keith A and Schmidt O (2012) 'Looking out for an Old Friend' Biodiversity

Ireland: Bulletin of the National Biodiversity Data Centre, 10 (Winter 2012):8-9.

Dr Brian Tobin

Tobin, B. and Nieuwenhuis, M. (2012) 'The importance of long-term monitoring of

forest growth and climate in Ireland' Forestry and Energy Review, 2 (2):34-35.

Dr Stephen Whelan

Whelan, S. J., Mulligan, F. J., Pierce, K. M (2013) 'Nitrogen efficiency in contrasting

dairy production systems' Advances in Animal Biosciences.

Pierce, K. M., Al Ibrahim, R. M., Palladino, R. A., Whelan, S. J., Mulligan, F. J. (2013)

'Short Communication: Effect of timing of introduction to pasture post calving and

supplementation with Saccharomyces cerevisiae on milk fatty acid profiles in early

lactation dairy cows' Food and Nutritional Sciences .

Back to Top

Conference Publications

Dr Alan Fahey

J.A. Calderon Diaz, A.G. Fahey, A.L. Kilbride, L.E. Green, and L.A. Boyle (2012)

Influence of floor type on the locomotory ability of loose housed sows 46th Annual

Scientific Meeting of the Association of Veterinary Teaching and Research Work (Irish

Branch),

M.R. Sheehy, F.J. Mulligan, M.A. Crowe, S. Aungier, and A.G. Fahey (2012) The effect

of body condition score loss in the last 15 days prior to calving on lactation parameters

of dairy cows 16th Congress of the European Society of Veterinary and Comparative

Nutrition,

Dr Olga Grant

Lynch, TMH; Grogan, D; Grant, OM; Dix, P; Barth, S (2013) Ground coverage

assessments of perennial ryegrass using digital imaging Agricultural Research Forum

2013, Tullamore, 77 - 77

Dr Kevin McDonnell

Ger Devlin and Radomir Klvac (2013) Opportunities for developing excavator based

cable logging operations in Ireland - A productivity analysis Forest Operations in

Mountaineous Conditions - IUFRO 3.06, Oslo, Norway,

Ger Devlin (2013) Bioenergy - Strategies and obstacles - How to reach 2020 targets








http://www.biodiversityireland.ie/wp-content/uploads/Bi-Edition10-web1.pdf

Mendel University (guest lecturer), Mendel University, Brno, Czech Republic,

Professor Frank Monahan

Monahan FJ, Moloney AP and Schmidt O. (2013) Meat authentication: determination of

the dietary background and geographical origin of meats 50th Annual Meeting of the

Brazilian Society of Animal Science, Campinas, Brazil,

Monahan FJ, Moloney AP and Schmidt O (2013) Authenticity and traceability of

grassland production and products . In: JLP Daniel, MC Santos, LG Nussio eds. 3rd

International Symposium on Forage Quality and Conservation, Campinas, Brazil, 169 -

190


Doyle, M, Barrett, F and Nieuwenhuis, M; (2012) PractiSFM II: The integration of yield

modelling into sustainable forest management planning Forest growth assessment and

modellingin Ireland - state of the art, Dublin,

Dr Olaf Schmidt

Monahan FJ, Moloney AP and Schmidt O (2013) Authenticity and traceability of

grassland production and products . In: JLP Daniel, MC Santos, LG Nussio eds. 3rd

International Symposium on Forage Quality and Conservation, Campinas, Brazil, 169 -

190

Monahan FJ, Moloney AP and Schmidt O. (2013) Meat authentication: determination of

the dietary background and geographical origin of meats 50th Annual Meeting of the

Brazilian Society of Animal Science, Campinas, Brazil,

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Published Reports

Dr Alan Fahey

Alan G. Fahey, Alison Corbally, Katherine Quinn-Brady (2012) Economic Contribution of

the Irish Sport Horse Industry to the Irish Economy. Horse Sport Ireland, Ireland.

Dr Alan Hunter

Hutton, F., Kildea, S., Hunter, A., Griffin, D., and Spink, J. 2013 (2013) Potato virus in

Ireland. Teagasc (T Research), Oakpark, Carlow.

Professor Alan Renwick

Renwick, Alan (2013) The Importance of the Cattle and Sheep Sectors to the Irish

Economy. Irish Farmers' Association, Dublin.

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Other Publications

Dr Lorraine Brennan

Lindsay, KL,Walsh, CA,Brennan, L,McAuliffe, FM (2013) Probiotics in pregnancy and

maternal outcomes: a systematic review. Reviews.

Dr Trudee Fair









http://www.coford.ie/media/coford/content/eventspresentations/events2011/forestgrowthassessmentseminar/1410_Marie_Doyle.pdf

http://www.ifa.ie/LinkClick.aspx?fileticket=WxdMuIdiwiA%3D&tabid=586

O'Doherty, AM,Magee, D,Beltman, ME,Mamo, S,Rizos, D,Fair, T (2013) VARIABLE

DNA METHYLATION PROFILES AT IMPRINTED LOCI IN BOVINE EARLY PRE-

IMPLANTATION EMBRYOS. Abstract.

Dr Mary Forrest

Forrest, M. (2013) The Rose, the Queen of Flowers. Newsletter.

Forrest, M. (2013) Bushy Park Allotments. Newsletter.

Forrest, M. (2012) Honeysuckles - common and less common for the garden. Newsletter.

Professor Patrick Lonergan

Maillo, V,Duffy, P,O'Hara, L,de Frutos, C,Kelly, AK,Lonergan, P,Rizos, D (2013)

EFFECT OF HUMAN CHORIONIC GONADOTROPIN (HCG) ADMINISTRATION

ON DAYS 1, 2, 3, OR 4 POST-OESTRUS ON CORPUS LUTEUM DEVELOPMENT

AND CIRCULATING PROGESTERONE CONCENTRATIONS IN BEEF HEIFERS.

Abstract.

Al Naib, A,Mamo, S,Lonergan, P (2013) INVESTIGATION OF A PREFERENTIALLY

UPREGULATED GENE CLUSTER IN DAY 7 BOVINE EMBRYOS DERIVED FROM

RNA SEQUENCING DATA. Abstract.

O'Hara, L,Forde, N,Rizos, D,Maillo, V,Ealy, AD,Kelly, AK,Rodriguez, P,Evans,

ACO,Lonergan, P (2013) EFFECT OF SHORT TERM PROGESTERONE

SUPPLEMENTATION ON CIRCULATING PROGESTERONE CONCENTRATION,

CORPUS LUTEUM SIZE, AND EARLY EMBRYO DEVELOPMENT IN CATTLE.

Abstract.

Dr Breige McNulty

Breen, C,Ryan, M,McNulty, B,Gibney, MJ,O'Shea, D (2013) Carbohydrate confusion in

Type 2 diabetes: quantity not quality prevails. Abstract.

Professor John O'Doherty

O'sullivan, J.T. and Gallagher, M. and O'doherty, J. and Sweeney, T. (2012) The

Improvement of Gastrointestinal Health, Immunity and Performance by Dietary

Intervention. .


Harbourne, N,Marete, E,Jacquier, JC,O'Riordan, D (2013) Stability of phytochemicals as

sources of anti-inflammatory nutraceuticals in beverages - A review. Reviews.

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Documents

Report of President 2012/2013 - School of Agriculture ... · Report of President 2012/2013 - School of Agriculture & Food Science >> Book Chapters >> Peer Reviewed Journals >> Other