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References

Page 2: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

87

6. REFERENCE

Ahern TJ and Klibanov AM (1985). The mechanisms of irreversible enzyme

inactivation at 100ºC. Science. 228:1280–1284.

Anthony T, Chandra Raj K, Rajendran A and Gunasekaran P (2003). High molecular

weight cellulase-free xylanase from alkali-tolerant Aspergillus fumigatus

AR1. Enz. Micro. Tech. 32:647–654.

Antranikian G, Herzberg C and Gottschalk G (1987). Production of thermostable a-

amylase, pullulanase and a-glucosidase in continuous culture by a new

Clostridium isolate. Appl. Environ. Microbiol. 53:1668–1673.

Apel-Birkhold PC and Walton JD (1996). Cloning, disruption, and expression of two

endo-beta 1, 4-xylanase genes, XYL2 and XYL3, from Cochliobolus

carbonum. Appl. Environ. Micro. 62:4129–4135.

Armstrong WP (1992). Devil Claws. 53: 19.

Ay J, Gotz F, Borriss R and Heinemann U (1998). Structure and function of the

Bacillus hybrid enzyme GluXyn-1: nativelike jellyroll fold preserved after

insertion of autonomous globular domain. Proc. Natl. Acad. Sci. USA.

95:6613–6618.

B´era-Maillet C, Arthaud L, Abad P and Rosso MN (2000). Biochemical

characterization of MI-ENG1, a family 5 endoglucanase secreted by the root-

knot nematode Meloidogyne incognita. Eur. J. Biochem. 267:3255–3263.

Badhan AK, Chadhaa BS, Soniaa KG, Saini HS and Bhat MK (2004). Functionally

diverse multiple xylanases of thermophilic fungus Myceliophthora sp. IMI

387099. Enz. Micro. Tech. 35:460–466.

Bahrami A, Shojaosadati S and Mahbeli G (2001). Biodegradation of

dibenzothiophene by thermophilic bacteria. Biotechnol. Lett. 23:899–901.

Page 3: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

88

Bajpai P (1999). Application of enzymes in the pulp and paper industry. Biotechnol.

Prog. 15:147–157.

Bajpai P, Bhardwaj NK, Bajpai PK and Jauhari MB (1994). The impact of xylanases

on bleaching of eucalyptus kraft pulp. J. Biotechnol. 38:1–6.

Ball AS and McCarthy AJ (1989). Production and purification of xylanase from

actinomycetes. J. Appl. Bacteriol. 66:439–444.

Barry VC and Dillon T (1940). Occurrence of xylans in marine algae. Nature. 146:

6–20.

Barthlott W (1977). Cacti. Stanley Thornes Ltd, Cheltenham.

Bastewade KB (1987). Structure and function relationship of xylanases. Ph.D.

Thesis, University of Pune, India.

Bastawde KB (1992). Xylan structure, microbial xylanases, and their mode of action.

World J. Microbiol. Biotechnol. 8:353–368.

Bastawde KB, Tabatabia LB, Meagher MM, Srinivasan MC, Vartak HG, Rele MV

and Reilly PJ (1991). Catalytic properties and partial amino acid sequence of

an actinomycete endoxylanase from Chainia sp. Am. Chem. Soc. Symp.

Series. 460:417–425.

Bauer M, Driskil L, Callen W, Snead M, Mathur E and Kelly R (1999). An

endoglucanase EglA from the hyperthermophilic archaeon Pyrococcus

furiosus hydrolyzes a-1,4 bonds in mixed linkage (1!3), (1!4)-b-D-glucans and

cellulose. J. Bacteriol. 181:284–290.

Becker P (1997). Determination of the kinetic parameters during continuous

cultivation of the lipase producing thermophile Bacillus sp. IHI-91 on olive

oil. Appl. Microb. Biotechnol. 48:184–190.

Beg QK, Bhushan B, Kapoor M and Hoondal GS (2000). Production and

Page 4: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

89

characterization of thermostable xylanase and pectinase from a Streptomyces

sp. QG-11-3. J. Ind. Microbiol. Biotechnol. 24:396–402.

Beg QK, Kapoor M, Mahajan L and Hoondal GS (2001). Microbial xylanases and

their industrial applications: a review Appl. Microbiol. Biotechnol. 56:

326–338.

Benson L (1982). The Cacti of the United States and Canada, Ca: Stanford University

Press, Stanford.

Bernier R, Driguez H and Desrochers M (1983). Molecular cloning of a Bacillus

subtilis xylanase gene in Escherichia coli. Gene. 26:59–65.

Badhan AK, Kaur J, Sonia G, Saini HS and Bhat MK (2004). Role of

Transglycosylation Products in the Expression of Multiple Xylanases in

Myceliophthora sp. IMI 387099. Current Microbiology. Volume 54: 405-409

Bharat B and Hoondal G (1998). Isolation, purification and properties of thermostable

chitinase from an alkalophilic Bacillus sp. BG-11. Biotechnol. Lett. 20:157–

159.

Bhat MK and Hazlewood GP (2000). Cellulases and related enzymes in

biotechnology. Biotechnol. Adv. 18:355–383.

Biely P (1985). Microbial xylanolytic systems. Trends Biotechnol. 3:286–290.

Biely P, Kluepfel D, Morosoli R and Shareck F (1993). Mode of action of three endo-

beta-1,4-xylanases of Streptomyces lividans. Biochem. Biophys. Acta. 1162:

246-254.

Biely P, Kratky Z and Vrsanska M (1981). Substrate-binding site of endo-1,4-beta-

xylanase of the yeast Cryptococcus albidus. Eur. J. Biochem. 119:559–564.

Biely P, Vrsanska M, Tenkanen M and Kluepfel D (1997). Endo-beta-1,4-xylanase

families: differences in catalytic properties. J. Biotechnol. 57:151–166.

Page 5: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

90

Biely P (2003). Xylanolytic enzymes. In: Whitaker JR, Voragen AGJ, Wong WS

(Eds.), Handbook of Food Enzymology. Marcel Dekker,Inc., New York. 879–

916.

Birenger JF, Frixon C, Bigliardi J and Creuzet N (1985). Production, purification, and

properties of thermostable xylanase from Clostridium stercorarium. Can. J.

Microbiol. 31:635–643.

Black GW, Rixon JE, Clarke JH, Hazlewood GP, Ferreira LM, Bolam DN and

Gilbert HJ (1997). Cellulose binding domains and linker sequences potentiate

the activity of hemicellulases against complex substrates. J. Biotechnol.

57:59–69.

Black GW, Rixon JE, Clarke JH, Hazlewood GP, Theodorou MK, Morris P and

Gilbert HJ (1996). Evidence that linker sequences and cellulose-binding

domains enhance the activity of hemicellulases against complex substrates.

Biochem. J. 319:515–520.

Blanco A, Vidal T, Colon JF and Pastor FIJ (1995). Purification and properties of

xylanase a from alkali-tolerant Bacillus sp. Strain BP-23. Appl Environ.

Microbiol. 61:4468–4470.

Boissenvain Charles H, and Davidson C (1940). Colorado Cacti. Abbey Garden Press,

Pasadena, California.

Borisjuk NV, Borisjuk LG, Logendra S, Petersen F, Gleba Y and Raskin I (1999).

Production of recombinant proteins in plant root exudates. Nature Biotechnol.

17:466–469.

Bradford MM (1976). A rapid and sensitive method for the quantitation of microgram

quantities of protein utilizing the principle of protein-dye binding. Anal.

Biochem. 72:248.

Page 6: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

91

Bray MR and Clarke AJ (1992). Action pattern of xylooligosaccharide hydrolysis by

Schizophyllum commune xylanase A. Eur. J. Biochem. 204:191–196.

Burrows W (1973). Text Book of Microbiology.W.B. Saunders Company, Ontario.

Canals A, Vega MC, Gomis-Ruth FX, Diaz M, Santamaria RR and Coll M (2003).

Structure of xylanase Xys1delta from Streptomyces halstedii. Acta.

Crystallogr. D: Biol. Crystallogr. 59:1447–1453.

Cannio R, Di Prizito N, Rossi M and Morana A (2004). A xylan-degrading strain of

Sulfolobus solfataricus: Isolation and characterization of the xylanase activity.

Extermophiles. 8:117–124.

Castro LPM, BA Trejo-Aguilar and Osorio GA (1997). Thermostable xylanases

produced at 37°C and 45°C by a thermotolerant Aspergillus strain. FEMS

Microbiol. Lett. 146:97–102.

Cesar T and Mirsa V (1996). Purification and properties of the xylanase produced by

Thermomyces lanuginosus. Enz. Micro.Tech. 19:289–296.

Chanda SK, Hirst EL, Jones JKN and Percival EGV (1950). The constitution of xylan

from esparto grass Stipa tenacissima. J. Chem. Soc. 50:1287–1289.

Chaudhri S, Thakur IS, Goel R and Johri BN (1988). Purification and characterization

of two thermostable xylanases from Melanocarpus albomyces. Biochem. Int.

17:563–575.

Chavez R, Schachter K, Navarro C, Peirano A, Aguirre C, Bull P and Eyzaguirre J

(2002). Differences in expression of two endoxylanase genes (xynA and

xynB) from Penicillium purpurogenum. Gene. 293:161–168.

Chidamian C (1958). The Book of Cacti and Other Succulents. The American Garden

Guild and Doubleday Company Inc, New York.

Chivero ET, Mutukumira AN and Zvauya R (2001). Partial purification and

Page 7: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

92

characterisation of a xylanase enzyme produced by a micro-organism isolated

from selected indigenous fruits of Zimbabwe. Food Chem. 72:179–185.

Chomoczynski P and Sacchi N (1987). Single step method of RNA isolation by acid

guanidium thiocyanate-Phenol-chloroform extraction. Anal. Biochem.

162:156.

Christakopoulos P, Katapodis P, Kalogeris E, Kekos D, Macris BJ, Stamatis H and

Skaltsa H (2003). Antimicrobial activity of acidic xylo-oligosaccharides

produced by family 10 and 11 endoxylanases. Int. J. Biol. Macromol. 31:171–

175.

Claeyssens FG, Loonfiens K, Kersters-Hilderson H and De Bruyne CK (1971). Partial

purification and properties of Aspergillus niger fl-D-xylosidase. Enzymologia.

44:177–198.

Claeyssens M and Henrissat B (1992). Specificity mapping of cellulolytic enzymes:

classification into families of structurally related proteins confirmed by

biochemical analysis. Protein sci. 1:1293–1297.

Collins T, Gerday C and G Feller (2005). Xylanases, xylanase families and

extremophilic xylanases. FEMS Microbiology Reviews. 29:3–23.

Comlekcioglu U, Ozkose E, Tutus A, Akyol I and Ekinci MS (2010). Cloning and

Characterization of Cellulase and Xylanase Coding Genes from Anaerobic

Fungus Neocallimastix sp. GMLF1. International J. Agri. Biol. 12:691–696.

Coutinho PM and Henrissat B (1999). Carbohydrate-active enzyme server (CAZY) at

URL: http://afmb.cnrs-mrs.fr/~cazy/ CAZY/.

Crab W and Mitchinson C (1997). Enzymes involved in the processing of starch to

sugars. Trends Biotechnol. 15:349–352.

Cullmann W, Gotz D and Groner G (1986). The Encyclopedia of Cacti. Timber press,

Page 8: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

93

Portland.

Das S, Paul S, Bag SK and Dutta C (2006). Analysis of Nanoarchaeum equitans

genome and proteome composition: indications for hyperthermophilic and

parasitic adaptation. BMC Genomics. 7:186.

Dayler CSA, Mendes PAM, Prates MV, Bloch C, Jr Franco OL and Grossi-de-Sa MF

(2005). Identification of a novel bean alpha-amylase inhibitor with chitinolytic

activity. FEBS Lett. 579:5616–5620.

De Rosa M, Morana A, Riccio A, Gambacorta A, Trincone A and Incani O (1994).

Lipids of the archaea: a new tool for bioelectronics. Biosens. Bioelectr. 9:

669–675.

Debyser W, Derdelinckx G and Delcour JA (1997). Arabi-noxylan solubilisation and

inhibition of the barelymalt xylanolytic system by wheat during brewingwith

wheat wholemeal adjunct:evidence for a newclass of enzyme inhibitors. J.

Amer. Socf. Brew. Chem. 55:153–156.

Debyser W, Peumans WJ, Van Damme EJM and Delcour JA (1999). Triticum

aestivum xylanase inhibitor (TAXI), a new class of enzyme inhibitor affecting

breadmaking performance. Cer. Sci. 30:39–43.

Defaye J, Guillot JM, Biely P and Vrsanska M (1992). Positional isomers of

thioxylobiose, their synthesis and inducing ability for D-xylan-degrading

enzymes in the yeast Cryptococcus albidus. Carbohydr. Res. 228:47–64.

Dehority BA (1967). Rate of isolated hemicelIulose degradation and utilization by

pure cultures of rumen bacteria. Appl. Microbiol. 15:987–993.

Dekker RFH and Richards GN (1975). Purification, properties and mode of action of

hemicellulase I. produced by Ceratocystis paradoxa. Carbohydr. Res. 39:97–

114.

Page 9: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

94

Dekker RFH (1985). Biodegradation of hemicellulose. Biosynthesis and

biodegradation of wood components. Academic Press, New York, 505-531.

Demirijan D, Moris-Varas F and Cassidy C (2001). Enzymes from extremophiles.

Curr. Opin. Chem. Biol. 5:144–151.

Derewenda U, Swenson L , Green R, Wei Y, Morosoli R, Shareck F, Kluepfel D and

Derewenda ZS (1994). Crystal structure, at 2.6-A˚ resolution, of the

Streptomyces lividans xylanase A, a member of the F family of beta-1,4-D-

glycanases. J. Biol. Chem. 269:20811–20814.

Dey D, Hinge J, Shendye A and Rao M (1992). Purifcation and properties of

extracellular endoxylanases from an alkalophilic thermophilic Bacillus sp.

Can. J. Microbiol. 38:436–442.

Diane W, Stephan R and Wolfgang Z (1997). Application of thermostable enzymes

for carbohydrate modification. In: Contribution of the Fourth International

Workshop on Carbohydrate as Organic Raw Materials, March 20–21, 1997.

WUV-Universitatverlag, Vienna.

Dominguez JM (1998). Xylitol production by free and immobilized Debaryomyces

hansenii. Biotechnol. Lett. 20:53–56.

Dominguez R, Souchon H, Spinelli S, Dauter Z, Wilson KS, Chauvaux S, Beguin P

and Alzari PM (1995). A common protein fold and similar active site in two

distinct families of betaglycanases. Nat. Struct. Biol. 2:569–576.

Dornez E, Gebruers K, Delcour JA and Courtin CM (2009). Grain associated

endoxylanases: occurrence, variability and importance for cereal processing.

Trends in Food Science and Technology. 20:495–510.

Eda S, Ohnishi A and Kato K (1976). Xylan isolated from the stalk of Nicotiana

tabacum. Agric. Biol. Chem. 40:359–364.

Page 10: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

95

Emmanuel L, Stefan J, Bernard H and Abdel B (2000). Thermophilic archaeal

amylolytic enzymes. Enz. Microb. Tech. 26:3–14.

Everly C and Alberto J (2000). Stressors, stress and survival: overview. Front.

Bioscien. 5:780–786.

Fengxia LU, Mei LU, Zhaoxin LU ., Xiaomei BIE, ZHAO Haizhen and Wang YI

(2008). Purification and characterization of xylanase from Aspergillus ficuum

AF-98. Biores. Tech. 99:5938-5941.

Fensome RA and Williams GL (2001). The Last Billion Years, Nova Scotia: Nimbus,

Halifax.

Fierens K, Brijs K, Courtin C M, Gebruers K, Goesaert H, Raedschelders G, Robben

J, VanCampenhout S, Volckaert G and Delcour JA (2003). Molecu-lar

identification of wheat endoxylanase inhibitor TAXI, member of a class of

proteins potentially involved in plant defense. FEBS Lett. 540:259–263.

Fitter J and Hebrele J (2000). Structural equilibrium fluctuation in mesophilic and

thermophilic amylase. Biophysical journal.79:1629.

Flatman R, McLauchlan WR and Juge N (2002). Interactions defining the specificity

between fungal xylanases and the xylanase-inhibiting protein XIP-I from

wheat. Biochemical Journal, 365:773–781.

Fontes CM, Gilbert HJ, Hazlewood GP, Clarke JH, Prates JA, McKie VA, Nagy T,

Fernandes TH and Ferreira LM (2000). A novel Cellvibrio mixtus family 10

xylanase that is both intracellular and expressed under noninducing conditions.

Microbiol. 146:1959–1967.

Fournier A, Frederick RMM, Frederick JR and Reilly PJ (1985). Purification and

characterization of endo-xylanases from Aspergillus niger. III. An enzyme of

pl 3.65. Biotechnol. Bioeng. 27:539–546.

Page 11: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

96

Franco OC, Grossidesa MF, Sales MP, Mello LV, Oliveira AS and Rigden DJ (2002).

Overlapping binding sites for trypsin and papain on a Kunitz-type proteinase

inhibitor from Prosopsis juliflora. Proteins. 48:311–319.

Frederick MM, Chin-Hen K, Fredericks JR and Reilly PJ (1985). Purification and

characterization of endoxylanases from Aspergillus niger I two isoenzyme

active on xylan backbone near branch points. Biotech. Bioeng. 27:527–532.

Fredrich A and Antrakian G (1996). Keratin degradation by Fervidobacterium

pennavorans, a novel thermophilicanaerobic species of the order

Thermotogales. Appl. Environ. Microbiol. 62:2875–2882.

Fujimoto Z, Kuno A, Kaneko S, Yoshida S, Kobayashi H, Kusakabe I and Mizuno H

(2000). Crystal structure of Streptomyces olivaceoviridis E-86 beta-xylanase

containing xylan- binding domain. J. Mol. Biol. 300:575–585.

Fushinobu S, Ito K, Konno M, Wakagi T and Matsuzawa H (1998). Crystallographic

and mutational analyses of an extremely acidophilic and acid-stable xylanase:

biased distribution of acidic residues and importance of Asp37 for catalysis at

low pH. Protein Eng. 11:1121–1128.

Gairola G and Powell D (1971). Electrophoretic protein pattems of Cytospora fungi.

Phytopathol. 71:135–140.

Galley JA and Edelman GM (1964). Biopoly. Symp. 1:367–381.

Ganju RK, Vithayathil PJ and Murthy SK (1989). Purification and characterization of

two xylanases from Chaetomium thermophile var. coprophile. Can. J.

Microbiol. 35:836–842.

Gat O, Lapidot A, Alchanati I, Regueros C and Y Shoham (1994). Cloning and DNA

Sequence of the Gene Coding for Bacillus stearothermophilus T-6 Xylanase.

Appl. Environ. Microbiol. 60:1889–1896.

Page 12: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

97

Gawande PV and Kamat MY (1999). Purification of Aspergillus sp xylanase by

precipitation with an anionic polymer Eudragit S100. Process Biochem.

34:577–580.

Gebruers K, Brijs K, Courtin CM, Fierens K, Goesaert H, Rabijns A, Raedschelders

G, Robben J, Sansen S, Sφrensen JF, Van Campenhout S and Delcour JA

(2004). Mini review: properties of TAXI-typeendoxylanase inhibitors.

Biochimica et Biophysica Acta-Proteins and Proteomics. 1696:213–221.

Georis J, Giannotta F, De Buyl E,Granier B,Frère JM. (2000). Purification and

properties of three endo-b-1,4-xylanases produced by Streptomyces sp. Strain

S38 which differ in their ability to enhance the bleaching of kraft pulps.

Enzyme Microb. Technol. 26:178-186.

Ghose TK and Bisaria VS (1987). Measurement of hemicellulases activities part I:

Xylanases. Int. Uni. of Pure and Appl. Chem. 59:1739–1752.

Gilbert HJ and Hazlewood GP (1993). Bacterial cellulases and xylanases. J. Gen.

Microbiol. 139:187–194.

Gilbert HJ, Sullivan DA, Jenkins G, Kellett LE, Minton NP and Hall J (1988).

Molecular cloning of multiple xylanase genes from Pseudomonas fluorescens

subsp. cellulosa. J. Gen. Microbiol. 134:3239–3247.

Gilkes NR, Henrissat B, Kilburn DG, Miller Jr RC and Warren RA (1991). Domains

in microbial 4-glycanases: sequence conservation, function, and enzyme

families. Microbiol. Rev. 55:303–315.

Goesaert H, Debyser W and Gebruers K (2001). Purificationand partial

characterization of an endoxylanase in-hibitor from barley. Cer. Chem.

78:453–457.

Goesaert H, Elliott G, Gebruers K, Courtin CM, Delcour JA and Juge N (2004). Mini

Page 13: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

98

review: occurrence of proteinaceous endoxylanase inhibitors in cereals

Biochimica et Biophysica Acta-Proteins and Proteomics. 1696:193–202.

Goesaert H, Gebruers K, Courtin CM, Proost P, van Damme J and Delcour JA

(2002). Affinity chromatography with immobilised endoxylanases Separates

TAXI- and XIP-type endoxylanase inhibitors from Wheat (Triticum aestivum

L.). J. Cer. Sci. 36:177–185.

Grepinet O, Chebrou MC and Beguin P (1988). Purification of Clostridium

thermocellum xylanase Z expressed in Escherichia coli and identification of

the corresponding product in the culture medium of Clostridium

thermocellum. J. Bacteriol. 170:4576–4581.

Groboillot A (1994). Immobilization of cells for application in the food industry. Crit.

Rev. Biotech. 14:75–107.

Gruber K, Klintschar G, Hayn M, Schlacher A, Steiner W and Kratky C (1998).

Thermophilic xylanase from Thermomyces lanuginosus: high-resolution X-ray

structure and modeling studies. Biochem. 37:13475–13485.

Gupta S, Bhushan B and Hoondal GS (2000). Isolation, purification and

characterization of xylanase from Staphylococcus sp. SG-13 and its

application in biobleaching of kraft pulp. J. Appl. Microbiol. 88:325–334.

Haas H, Herfurth E, Stoffler G and Redl B (1992). Purification, characterization and

partial amino acid sequences of a xylanase produced by Penicillium

chrysogenum. Biochim. Biophys. Acta. 1117:279–286.

Hakulinen N, Turunen O, Janis J, Leisola M and Rouvinen J (2003). Three-

dimensional structures of thermophilic beta-1,4-xylanases from Chaetomium

thermophilum and Nonomuraea flexuosa. Comparison of twelve xylanases in

relation to their thermal stability. Eur. J. Biochem. 270:1399–1412.

Page 14: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

99

Harris GW, Jenkins JA, Connerton I , Cummings N, Lo Leggio L , Scott M,

Hazlewood GP, Laurie JI, Gilbert HJ and Pickersgill RW (1994). Structure of

the catalytic core of the family F xylanase from Pseudomonas fluorescens and

identification of the xylopentose-binding sites. Structure. 2:1107–1116.

Harris GW , Pickersgill RW, Connerton I, Debeire P, Touzel JP, Breton C and Perez

S (1997). Structural basis of the properties of an industrially relevant

thermophilic xylanase. Proteins. 29:77–86.

Hayashi H, Takagi KI, Fukumura M, Kimura T, Karita S, Sakka K and Ohmiya K

(1997). Sequence of xynC and properties of XynC, a major component of the

Clostridium thermocellum cellulosome. J. Bacteriol. 179:4246–4253.

Heck JX, De Barros-Soares LH, Hertz PF and Záchia-Ayub MA (2006). Purification

and properties of a xylanase produced by Bacillus circulans BL53 on solid-

state cultivation. Biochem. Eng. J. 32:179–184.

Heightman TD and Vasella A (1999). Recent insights into inhibition, structure, and

mechanism of configuration-retaining glycosidase. Angew. Chem. Int. Ed.

38:750–770.

Herbert R and Sharp R (1992). Molecular Biology and Biotechnology of

Extremophiles. Chapman and Hall, NY.

Hoffman WS (1937). A rapid photoelectric method of determination of glucose in

blood and urine. J. Biol. Chem. 120:51-55.

Honda H, Kudo T and Horikosh K (1985). Selective excretion of alkaline xylanase

by Escherichia coli carrying pCX311. Agric. Biol. Chem. 49:3011–3015.

Honda H, Kudo T and Horikosh K (1986). Extracellular production of alkaline

xylanase of alkalophilic Bacillus sp. by Escherichia coli carrying pCX311. J.

Ferment. Tech. 64:373– 377.

Page 15: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

100

Honda H, Kudo T and Horikoshi K (1985). Molecular cloning and expression of the

xylanase of alkalophilic Bacillus sp. Strain C-125 in Escherichia coli. J.

Bacteriol. 161:784–785.

Honda H, Kudo T and Horikoshi K (1985). Purification and partial characterization

of alkaline xylanase from Escherichia coli carrying pCX311. Agric. Biol.

Chem. 49:3165–3169.

Honda H, Kudo T and Horikoshi K (1986). Production of extracellular alkaline

xylanase of alkalophilic Bacillus sp. C-125 by Escherichia coli carrying

pCX311. Appl. Microbiol. 8:152–157.

Horiike T, Miyata D and Hamada K (2009). Phylogenetic construction of 17 bacterial

phyla by new method and carefully selected orthologs. . Gene. 429:59–64.

Hrmova M, Biely P, Vrsanka M and Petrakova E (1984). Induction of cellulose-and

xylan-degrading enzyme complex in yeast Trichosporon cutaneum. Arch.

Microbiol. 161:371–376.

Iefuji H, Chino M, Kato M and Iimura Y (1996). Acid xylanase from yeast

Cryptococcus sp. S-2: Purification, characterization, cloning, and sequencing.

Biosci. Biotechnol. Biochem. 60:1331–1338.

Igawa T, Tokai T , Kudo T, Yamaguchi I and Kimura M (2005). A wheat xylanase

inhibitor gene Xip-I, but not Taxi-I, is significantly induced by biotic and

abiotic signals that trigger plant defense. Biosci. Biotechnol. Biochem.

69:1058–1063.

Inagaki K, Nakahira K, Mukai K, Tamura T and Tanaka H (1998). Gene cloning and

characterization of an acidic xylanase from Acidobacterium capsulatum.

Biosci. Biotechnol. Biochem. 62:1061–1067.

Inaoka M and Soda H (1956). Crystalline xylanase. Nature. 178:202–203.

Page 16: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

101

Irwin D, Jung ED and Wilson DB (1994). Characterization and sequence of a

Thermomonospora fusca xylanase. Appl. Environ. Microbiol. 60:763–770.

Ito S, Kuno A, Suzuki R, Kaneko S, Kawabata Y, Kusakabe I and T Hasegawa

(2004). Rational affinity purification of native Streptomyces family 10

xylanase. J. Biotech. 110:137–142.

Iwamoto T, Sasaki T and Inaoka M (1973). Purification and some properties of

xylanase from Aspergillus niger. Mem. Coll. Agric. Ehime Univ, 17:185–197.

Jaabar A, Rashid MH, Javed MR, Perveen R and Malana MA (2008). Kinetics and

thermodynamics of a novel endoglucanase (CMCase) from Gymnoascella

citrina produced under solid-state condition. J. Ind. Microbiol. Biotechnol.

35:515–524.

Jacobsen H (1954). A Handbook of Succulent Plants. Dorset: Blandford Press,

Poole.3.

Jaenicke R and Bohm G (1998). The stability of proteins in extreme environments.

Curr. Opin. Struct. Biol. 8:738–748.

Jalal A, Rashid N, Rasool N and Akhtar M (2008). Gene cloning and characterization

of a xylanase from a newly isolated Bacillus subtilis strain R5. Journal of

Bioscience and Bioeng. 107:360–365.

Janis J, Turunen O, Leisola M, Derrick PJ, Rouvinen J and Vainiotalo P (2004).

Characterization of mutant xylanases using fourier transform ion cyclotron

resonance mass spectrometry: Stabilizing contributions of disulfide bridges

and N-terminal extensions. Biochemistry (Mosc). 43:9556–9566.

Jeong KJ, Lee PC, Park IY, Kim MS and Kim SC (1998). Molecular cloning and

characterization of an endoxylanase gene of Bacillus sp. in Escherichia coli.

Enz. Micro. Tech. 22:599–605.

Page 17: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

102

Jiang ZQ, Yang SQ, Tan SS, Li LT and Li XT (2005). Characterization of a

xylanase from the newly isolated thermophilic CAU44 and its application in

bread making. Lett. Appl. Microbiol. 41:69–76.

John M, Schmidt B and Schmidt J (1979). Purification and some properties of five

endo-1,4-p-D-xylanases and a P-Dxylosidase produced by a strain of

Aspergillus niger. Can. J. Biochem. 57:125–134.

Jong Bae H, Joo Kim H and Kim Y (2008). Production of a recombinant xylanase in

plants and its potential for pulp biobleaching applications. Biores. Tech.

99:3513–3519.

Joseleau JP, Comtat J, Ruel K (1992) Chemical structure of xylans and their

interactions in the plant cell walls. In: Visser J, Beldman G, vanSomeren

MAK, Voragen AGJ (eds) Xylans and xylanases. Elsevier, Amsterdam. 1–15.

Karnchanatat A, Petsom A , Sangvanich P , Piapukiew J, Whalley A, Reynolds C ,

Gaddd G and Sihanonth P (2008). A novel thermostable endoglucanase from

the wood-decaying fungus Daldinia eschscholzii (Ehrenb.:Fr.) Rehm. Enz.

Micro. Tech. 42:404–413.

Katapodis P, Vrsanska M, Kekos D, Nerinckx W, Biely P, Claeyssens M, Macris BJ

and Christakopoulos P (2003). Biochemical and catalytic properties of an

endoxylanase purified from the culture filtrate of Sporotrichum thermophile.

Carbohydr. Res. 338:1881–1890.

Keskar SS, Srinivasan MC and Deshpande VV (1989). Chemical modification of a

xylanase from a thermotolerant Streptomyces T7. Biochem. J. 261:49–55.

Keum S, Jeya M, Lee J and Y Suk Ki (2010). Purification and characterization of a

thermostable xylanase from Fomitopsis Pinicola. J. Microbiol. Biotech.

20:1415–1423.

Page 18: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

103

Khandeparkar R and Bhosle NB (2006). Purification and characterization of

thermoalkalophilic xylanase isolated from the Enterobacter sp. MTCC 5112.

Res. Microbiol. 157:315–325.

Khandke KM, Vithaythil PJ and Murthy SK (1989). Purification of xylanase, β-

glucosidase, endocellulase and exo cellulase from a thermophilic fungus,

Thermoascus aurantiacus. Arch. Biochem. Biophys. 274:491–500.

Khasin A, Alchanat I and Y Shoham (1993). Purification and characterization of a

thermostable xylanase from Bacillus stearothermophilus T-6. Appl. Environ.

Microbiol. 59:1725–1730

Kim DY, Han M, Lee J, Woo OH, Sang PD, Dong-ha S, Sook bae K, Kwang-hee S

and Ho-yong P (2009). Isolation and characterization of a cellulase-free endo-

β-1,4-xylanase produced by an invertebrate-symbiotic bacterium,

Cellulosimicrobium sp. HY-13 Process Biochem. 44:1055–1059.

Kohilu U, Nigam P, Singh D and Chaudhary K (2001). Thermostable, alkaliphilic and

cellulase free xylanases production by Thermoactinomyces thalophilus

subgroup C. Enz. Microb. Tech. 28:606–610.

Kormelink FJM, Gruppen H, Vietor RJ and Voragen AGJ (1993). Mode of action of

xylan degrading enzymes from Aspergillus awamori and alkali extractable

cereal arabinoxylans. Carbohydr. Res. 249:355–367.

Krahe M, Antranikian G and Markel H (1996). Fermentation of extremophilic

microorganisms. FEMS Microbiol. Rev. 18:271– 285.

Krengel U and Dijkstra BW (1996). Three-dimensional structure of Endo-1,4-beta-

xylanase I from Aspergillus niger, molecular basis for its low pH optimum. J.

Mol. Biol. 263:70–78.

Kubata BK , Suzuki Tohru , Horitsu Hiroyuki, Kawai Keiichi and Takamizawa

Page 19: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

104

Kazuhiro (1994). Purification and characterization of Aeromonas caviae ME-1

xylanase V, which produces exclusively xylobiose from Xylan. Appl. Environ.

Microbiol. 60:531-535.

Kubata BK, Takamizawa K, Kawai K, Suzuki T and Horitsu H (1995). Xylanase IV,

an exoxylanase of Aeromonas caviae ME-1 which produces Xylotetraose as

the only low-Molecular-Weight oligosaccharide from xylan. Appl. Environ.

Microbiol. 61:1666–1668.

Kuhad RC and Singh A (1993). Lignocellulosic biotechnology: current and future

prospects. Crit. Rev. Biotech. 13:151–172.

Kulkarni N, Shendye A and Rao M (1999). Molecular and biotechnological aspects

of xylanases. FEMS Microbiol. Rev. 23:411–456.

Kumar HD and Swati S (2001). Modern Concepts of Microbiology, second revised

ed. Vikas Publishing House Pvt. Ltd., New Delhi.

Kumar PR, Eswaramoorthy S, Vithayathil PJ and Viswamitra MA (2000). The

tertiary structure at 1.59 A˚ resolution and the proposed amino acid sequence

of a family-11 xylanase from the thermophilic fungus Paecilomyces varioti

bainier. J. Mol. Biol. 295:581–593.

Kumar S and Nussinov R (2001). How do thermophilic proteins deal with heat? A

review. Cell. Mol. Life Sci. 58:1216–1233.

Kuno A, Kaneko S, Ohtsuki H, Ito S, Fujimoto Z, Mizuno H, Hasegawa T, Taira K,

Kusakabe I and Hayashi K (2000). Novel sugar-binding specificity of the type

XIII xylan-binding domain of a family F/10 xylanase from Streptomyces

olivaceoviridis E-86. FEBS Lett. 482:231.

Labavitch JM and Greve LC (1983). Cell wall metabolism in ripening fruit. III.

Purification of an endo-P-1,4-xylanase that degrades a structural

Page 20: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

105

polysaccharide of pear fruit cell walls. Plant Physiol. 72:668-673.

Laemmli (1970). Cleavage of structural proteins during the assembly of of the head of

bacteriophage T4. Nature. 227:680-685.

Landerman K, Asada K, Uemori T, Mukai H, Taguchi Y, Kato I and Anfinsen C

(1993). Alpha amylase from the hyperthermophilic archaebacterium

Pyrococcus furious. Cloning and sequencing of the gene and expression in E.

coli. J. Biol. Chem. 268:24402–24407.

Lao PJ and Forsdyke DR (2000). Thermophilic bacteria strictly obey szybalski's

transcription direction rule and politely purine-load RNAs with both adenine

and guanine. Genome Res. 10:228–236.

Larson S.B, Day J, Barba de la Rosa AP, Keen NT and McPherson A (2003). First

crystallographic structure of a xylanase from glycoside hydrolase family 5:

implications for catalysis. Biochem. 42:8411–8422.

Lee C and Zeikus JG (1991). Purification and characterization of thermostable

glucose isomerase from Clostridium thermosulfurogenes and

Thermoanaerobacter stain B6A. Biochem. J. 274:565–571.

Lee J (1997). Biological conversion of lignocellulosic biomass to ethanol. J. Biotech.

56:1–24.

Lee KW, Everts H, Kappert HJ, Wouterse H, Frehner M and Beynen AC (2004).

Cinnamanaldehyde, but not thymol, counteracts the carboxymethyl cellulose-

induced growth depression in female broiler chickens. Int. J. Poult. Sci.

3:608–612.

Leuschner C and Antranikan G (1995). Heat stable enzymes from extremely

thermophilic and hyperthermophilicmic organism. World J. Microbiol.

Biotechnol. Bioeng. 11:95–114.

Page 21: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

106

Liu W, Zhu W, Lu Y, Kong Y and Ma G (1998). Production, partial purification and

characterization of xylanase from Trichosporon cutaneum SL409. Process

Biochem. 33:331–326.

Lo Leggio L, Kalogiannis S, Bhat MK and Pickersgill RW (1999). High resolution

structure and sequence of T. aurantiacus xylanase I: implications for the

evolution of thermostability in family 10 xylanases and enzymes with (beta)

alpha-barrel architecture. Proteins. 36:295–306.

Lopez G (1999). DNA supercoiling and temperature adaptation: a clue to early

diversification of life. J. Mol. Evol. 46:439–452.

Lu F, Lu M, Lu Z, Bie X and Zhao H (2008). Purification and `characterization of

xylanase from Aspergillus ficuum AF-98. Biores. Tech. 99:5938-5941.

Luthi E, Love DR, McAnulty J, Wallace C, Caughey PA, Saul D and Bergquist PL

(1990). Cloning, sequence analysis, and expression of genes encoding xylan-

degrading enzymes from the thermophile Caldocellum saccharolyticum. Appl.

Environ. Microbiol. 56:1017–1024.

Maa J, Roza M, Verbakel J, Stem H, Santos Da Silva MJ, Bosse M, Egmond MR,

Hagemans MLD, Gorcom RFM, Hessing JGM, van den Hondel CAMJJ, van

Rotterdam C (1992). Xylanases and their applications in bakery. In: Visser J,

Beldman G, Austers-van Someran MA, Voragen AGJ. (Eds.), Xylan and

Xylanases. Elsevier, Amsterdam. 349–360.

Madigan MT and Martino JM (2006). Brock Biology of Microorganisms (11th ed.).

Pearson 136.

Maes D, Zeelen JP and Thanki N (1999). The crystal structure of triosephosphate

isomerase (TIM). from Thermotoga maritima: a comparative thermostability

structural analysis of ten different TIM structures. Protein Struct. Funct.

Page 22: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

107

Genet. 37:441–453.

Margaritis A, Merchant R and Makoto Yaguchi (1983). Xylanase, CM-cellulase and

Avicelase production by the thermophilic fungus Sporotrichum thermophile.

Biotechnology Letters. Volume 5: 265-270

Marui M, Nakanishi K and Yasui T (1985). Immunological properties and constituent

amino acids of three xylanases produced inductively from Streptomyces sp.

Agri. Biol. Chem. 49:3409–3413.

Mata G and Savoie JM (1998). Extracellular enzyme activities in six Lentinula edodes

strains during cultivation in wheat straw World J. Microbiol. Biotech. 14:513–

519.

Matsumura S, Sakiyama K and Toshima K (1999). Preparation of octyl-β-D-

xylobioside and xyloside by xylanase catalyzed direct transglycosylation

reaction of xylan and octanol. Biotechnol. Lett. 21:17–22.

McCarthy AA, Morris DD, Bergquist PL and Baker EN (2000). Structure of XynB, a

highly thermostable beta-1,4- xylanase from Dictyoglomus thermophilum

Rt46B.1, at 1.8 A˚ resolution. Acta. Crystallogr. D: Biol. Crystallogr.

56:1367–1375.

McLauchlan WR, Garcia-Conesa MT, Williamson G, Roza M, Ravestein P and Maat

J (1999). A novel class of protein from wheat which inhibits xylanases.

Biochem. J. 338:441–446.

Mechaly A, Teplitsky A, Belakhov V, Baasov T, Shoham G and Shoham Y (2000).

Overproduction and characterization of seleno-methionine xylanase T-6. J.

Biotech. 78:83–86.

Mendicuti Castro LP, Trejo-Aguilar BA and Osorio GA (1997). Thermostable

xylanases produced at 37°C and 45°C by a thermotolerant Aspergillus strain.

Page 23: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

108

FEMS Microbiol. Lett. 146:97–102.

Merkler DJ, Srikumar K, Marchese ragona SP and welder FC (1998). Aggregation of

thermoinactivation of glutamine synthetase from an extreme thermophiles

Bacillus caldolyticus. Biochemica et Biophysica acta.952: 101-1114.

Miller GL (1959). Use if dinitrosalicylic acid reagent for determination of reducing

sugars. Anal. Biochem. 31:426–428.

Millward-Sadler SJ, Davidson K, Hazlewood GP, Black G.W, Gilbert HJ and Clarke

JH (1995). Novel cellulose-binding domains, NodB homologues and

conserved modular architecture in xylanases from the aerobic soil bacteria

Pseudomonas fluorescens subsp. cellulosa and Cellvibrio mixtus. Biochem. J.

312:39–48.

Min-Jen T, Mee-Nagan Y, Khanok R, K Khin L and Shui-Tein C (2002).

Purification and characterization of two cellulose free xylanases fron an

alkaliphilic Bacillus firmus. Enz. Micro. Tech. 30:590–595.

Misas-Villamil JC and Van der Hoorn RAL (2008). Enzyme-inhibitor interactions at

the plant-pathogen interface. Curr. Opin. Plant Biol. 11:380–388.

Montgomery R, Smith F and Srivastava HC (1956). Structure of cornhull

hemicellulose. I. Partial hydrolysis and identification of 2-o-(α-D-

glucopyranosyluronic acid)-D-xylopyranose. J. Am. Chem. Soc. 78:2837–

2839.

Monti R, Terenzi HF and Jorge J (1991). Purification and properties of an

extracellular xylanase from the thermophilic fungus Humicola grisea var.

thermoidea. Can. J. Microbiol. 37:675–681.

Morag E, Bayer EA and Lamed R (1990). Relationship of cellulosomal and non

cellulosomal xylanases of Clostridium thermocellum to cellulose degrading

Page 24: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

109

enzymes. J. Bacteriol. 172:6098–105.

Moreau RA, Powell MJ, Whitaker BD, Bailey BA and Anderson JD (1994). Xylanase

treatment of plant cells induces glycosylation and fatty acylation of

phytosterols. Physiol. Plant. 91:575–580.

Moriyama H, Hata Y, Yamaguchi H, Sato M, Shinayo A, Tanaka N, Okada H and

Katsube Y (1987). Crystallization and primary X-ray studies of Bacillus

pumilus IPO xylanase. J. Mol. Biol. 193:237–239.

Morosoli R, Roy C and Yaguchi M (1986). Isolation and partial primary sequences of

a xylanase from yeast Cryptococcus albidus. Biochimica et Biophysica Acta.

870:473–478.

Mozhaev V (1993). Mechanism-based strategies for protein thermostabilization.

Trends Biotechnol. 11:88–95.

Nakamura S, Wakabayashi K, Nakai R, Aono R and Horikoshi K (1993). Purification

and some properties of an alkaline xylanase from an alkaliphilic Bacillus sp

strain 41M-1. World J. Microbiol. Biotech. Bioeng. 59:2311–2316.

Natesh R, Bhanumoorthy P, Vithayathil PJ, Sekar K, Ramakumar S and Viswamitra

MA (1999). Crystal structure at 1.8 A resolution and proposed amino acid

sequence of a thermostable xylanase from Thermoascus aurantiacus. J. Mol.

Biol. 288:999–1012.

Niehaus F, Bertoldo C, Kahler M and Antranikian G (1999). Extremophiles as a

source of novel enzymes for industrial applications. Appl. Microbiol. Biotech.

51:711–729.

Nobel PS (1989). A nutrient index quantifying productivity of agaves and cacti. J.

Appl. Ecol. 26: 635.

Ntarima P, Nerinckx W, Klarskov K, Devreese B , Bhat M.K, Van Beeumen J and

Page 25: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

110

Claeyssens M (2000). Epoxyalkyl glycosides of D-xylose and xylo-

oligosaccharides are active-site markers of xylanases from glycoside hydrolase

family 11, not from family 10. Biochem. J. 347:865–873.

Oakley AJ, Heinrich T, Thompson CA and Wilce MC (2003). Characterization of a

family 11 xylanase from Bacillus subtillis B230 used for paper bleaching.

Acta. Crystallogr. D: Biol. Crystallogr. 59:627–636.

Ohkoshi A, Kudo T, Mase T and Horikoshi K (1985). Purification of three types of

xylanases from an alkalophilic Aeromonas sp. Agric. Biol. Chem. 49:3037–

3038.

Olsson L and Hahn-Hagerdal B (1996). Fermentation of lignocellulosic hydrolysates

for ethanol production. Enz. Micro. Tech. 18:312–331.

Paice MG, Bourbonnais R, Desrocher SM, Jurasek L and Yaguchi M (1986). A

xylanase gene from Bacillus subtilis nucleotide sequence and composition

with Bacillus pumilus gene. Archives of Microbiol. 144:201–206.

Pal A and Khanum F (2011). Purification of xylanase from Aspergillus niger DFR-5:

Individual and interactive effect of temperature and pH on its stability. Process

Biochem. 46:879–887.

Pell G, Szabo L, Charnock SJ , Xie H, Gloster TM , Davies GJ and Gilbert HJ

(2004). Structural and biochemical analysis of Cellvibrio japonicus xylanase

10C: how variation in substrate-binding cleft influences the catalytic profile of

family GH-10 xylanases. J. Biol. Chem. 279:11777–11788.

Pell G, Taylor EJ, Gloster TM , Turkenburg JP, Fontes CM, Ferreira LM , Nagy T,

Clark SJ , Davies GJ and Gilbert HJ (2004). The mechanisms by which

family 10 glycoside hydrolases bind decorated substrates. J. Biol. Chem.

279:9597–9605.

Page 26: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

111

Peter W, Alexandra T and Klaus D (2001). Conversions of glycerol to 1,3-propandiol

by a newly isolated thermophilicstrain. Biotechnol. Lett. 23:463–466.

Polizeli MLTM, Rizzatti ACS, Monti R, Terenzi HF, Jorge JA and Amorim DS

(2005). Xylanases from fungi: properties and industrial applications Appl.

Microbiol. Biotechnol. 67:577–591.

Poonam N and Dalel S (1995). Enzyme and microbial systems involved in starch

processing. Enz. Microb. Tech. 17:770–778.

Prade RA (1995). Xylanases: from biology to biotechnology. Biotech. Genet. Eng.

Rev. 13:100–131.

Proctor RC and Meyer C (1954). The flowering Cactus. Mc Graw-Hill Book Co.,

Inc., New York.

Puchart V, Katapodis P, Biely P, Kremnicky L, Christakopoulos P, Vrsanska M,

Kekos D, Marcis BJ and Bhat MK (1999). Production of xylanases,

mannanases, and pectinases by the thermophilic fungus Thermomyces

lanuginosus. Enz. Micro. Tech. 24:355–361.

Puls J, Schuseil J (1993) Chemistry of hemicelluloses: relationship between

hemicellulose structure and enzyme required for hydrolysis. In: Coughlan MP,

Hazlewood GP (eds) Hemicellulose and hemicellulases. Portland Press,

London. 1–28.

Qin Q, Bergmann CW, Rose JKC, Saladie M, Kolli VSK, Albersheim P, Darvill AG

and York WS (2003). Characterization of a tomato protein that inhibits a

xyloglucan-specific endoglucanase. Plant J. 34:327–338.

Querido ALS, Coelho JLC, Araújo EF and Chaves-Alves VM (2008). Partial

purification and characterization of xylanase produced by Penicillium

expansum. Braz. Arch. Biol. Tech. 49:475–480.

Page 27: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

112

Rani S and Nand K (1996). Development of cellulase-free xylanase producing

anaerobic consortia for the use of lignocellulosic wastes. Enz. Micro. Tech

18:23–28.

Ricardo FA, Frederick MM, Frederick JR and ReilIy PJ (1985). Purification and

characterization of endoxylanase from Aspergillus niger III. An enzyme of pI

3.65. Biotechnol. Bioeng. 27:539–546.

Riha J and Subik R (1981). The Illustrated Encyclopedia of Cacti and Other

Succulents, Octopus Books Ltd, London.

Rizzatti ACS , Jorge JA, Terenzi HF, Rechia CGV and Polizeli MLTM (2001).

Purification and properties of a thermostable extracellular β-xylosidase

produced by a thermotolerant Aspergillus phoenicis. J. Ind. Microbiol.

Biotech. 26:156–160.

Roger B, Michel J, Luborin D and Michael GP (1983). Isolation and characterization

of a xylanase from Bacillus subtilis. Appl. Environ. Microbiol. 46:511–514.

Romaniec MP, Fauth U, Kobayashi T, Huskisson NS, Barker PJ and Demain AL

(1992). Purification and characterization of a new endoglucanase from

Clostridium thermocellum. Biochem. J. 283:69–73.

Roncero MB, Torres AL, F Colom J and Vidal T (2003). Effect of xylanase on ozone

bleaching kinetics and properties of Eucalyptus kraft pulp. Chemical

technology and Biotechnology, 78:1023–1031.

Rose DR, Bimbum GI, Tan LVL and Saddler JN (1987). Differentiation study of a

xylanase from Trichoderma harzianum. J. Mol. Biol. 194:755–756.

Roy N and Rowshanul Habib M (2009). Isolation and characterization of Xylanase

producing strain of Bacillus cereus from soil. . IRAN. J. Microbiol. 1:49–53.

Rruiz-arribas A, Ferna´ndez-abalos J, Nchez P, Garda A and Santamari R (1995).

Page 28: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

113

Overproduction, purification, and biochemical characterization of a xylanase

(Xys1) from Streptomyces halstedii JM8. Appl. Environ. Microbiol. 61:

2414–2419.

Ruiz-Arribas A, Santamaría RI, Zhadan GG, Villar E and Shnyrov VL (1994).

Differential scanning calorimetric study of the thermal stability of xylanase

from Streptomyces halstedii JM8. . Biochem. (Mosc). 33:13787–13791.

Russell CE, and Felker P (1987). The Prickly pear (Opuntia sp., Cactaceae): a source

of human and animal food in semi-arid regions. Econ. Bot. 41: 433.

Ryttersgaard C, Lo Leggio L, Coutinho PM, Henrissat B and Larsen S (2002).

Aspergillus aculeatus beta-1,4-galactanase: substrate recognition and relations

to other glycoside hydrolases in clan GH-A. Biochem. 41:15135–15143.

Sabini E, Wilson KS, Danielsen S, Schulein M and Davies GJ (2001).

Oligosaccharide binding to family 11 xylanases: both covalent intermediate

and mutant product complexes display (2,5)B conformations at the active

centre. Acta Crystallogr. D: Biol. Crystallogr. 57:1344–1347.

Saha BC (2002). Production, purification and properties of xylanase from a newly

isolated Fusarium proliferatum. Process Biochem. 37:1279–1284.

Sambrook J, Fritsch EF and Maniatis T (1989). Molecular cloning: a laboratory

manual. 2nd ed. Cold Spring Harbor Laboratory manual and Cold Spring

Harbor Press, N.Y.

Sapag A, Wouters J, Lambert C, Ioannes P, Eyzaguirre J and Depiereux E (2002).

The endoxylanases from family 11: computer analysis of protein sequences

reveals important structural and phylogenetic relationships. J. Biotechnol.

95:109–131.

Saraswat V and Bisaria SV (1997). Biosynthesis of xylanolytic and xylan

Page 29: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

114

debranching enzymes in Melanocarpus albomyces IIS 68. J. Ferment. Bioeng.

83:352–357.

Sarikaya E, Higassa T, Adachi M and Mikami B (2000). Comparison of degradation

abilities of a- and b-amylases on raw starchgranules. Proc. Biochem. 35:711–

715.

Satosi H, Seigo O, Kenji T, Kazuhisa K, Tetsuo K, Toshiak K and Hitosi K (2001).

Chemo-enzymaticsynthesis of 3-(2-naphtyl)-L-alanine by an amino transferase

from the extreme thermophiles Thermococcus profoundus. Biotechnol. Lett.

23:589–591.

Saul DJ, Williams LC, Reeves RA , Gibbs MD and Bergquist PL (1995). Sequence

and expression of a xylanase gene from the hyperthermophile Thermotoga sp.

strain FjSS3-B.1 and characterization of the recombinant enzyme and its

activity on kraft pulp. Appl. Enviorn. Microbiol. 61:4110–4113.

Savitha S, Sadhasivam S and Swaminathan K (2000). Application of Aspergillus

fumigatus xylanase for quality improvement of waste paper pulp. Bulletin of

Environmental Contamination and Toxicology, 78:217–221.

Schmidt A, Schlacher A, Steiner W, Schwab H and Kratky C (1998). Structure of the

xylanase from Penicillium simplicissimum. Protein Sci. 7:2081–2088.

Schultz J and Floyd T (1979). Desert Survivor: North America's Creosote Bush.

Natural History. 108: 24.

Schulze E (1891). Information regarding chemical composition of plant cell

membrane. Ber Dtsch Chem. Ges. 24:2277–2287.

Schwantes DG (1957). Flowering Stones and Mid-day Flowers. Ernest Benn Ltd,

London.

Segura BG, Durand R and Fevre M (1998). Multiplicity and expression of xylanases

Page 30: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

115

in the rumen fungus Neocallimastix frontalis. FEMS Microbiol. Lett. 164:

47–53.

Shao W, Deblois S and Wiegel J (1995). A high-molecular-weight, cell-associated

xylanase isolated from exponentially growing Thermoanaerobacterium sp.

strain JW/SL-YS485. Appl. Environ. Microbiol. 61:937–940.

Sharma HSS (1987). Enzymatic degradation of residual non-cellulosic

polysaccharides present on dew-retted flax fibers. Appl. Microbiol. Biotech.

26:358–362.

Shei JC, Fratzke AR, Frederick MM, Frederick JR and Reilly PJ (1985). Purification

and characterization of endoxylanase from Aspergillus niger II. An enzyme of

pI 4.5. Biotech. Bioeng. 27:533–538.

Shin K, Jeya J, Lee JK and Kim YS (2010). Purification and characterization of a

thermostable xylanase from Fomitopsis pinicola. J Microbiol

Biotechnol.20:1415-1423.

Shulami S, Gat O, Sonenshein AL and Shoham Y (1999). The glucuronic acid

utilization gene cluster from Bacillus stearothermophilus T-6. J. Bacteriol.

181:3695–3704.

Singh S, Madlala AM and Prior BA (2003). Thermomyces lanuginosus: properties of

strains and their hemicellulases. FEMS Microbiol. Rev. 27:3–16.

Somogyi M (1952). Notes on sugar determination. J. Biol. Chem. 165:19–23.

Southern E (1979). Gel electrophoresis of restriction fragments. Methods Enzymol.

62:152–176.

Spagna G, Ramagnoli D, Angela M, Biochi G and Pifferi PG (1998). A simple

method for purifying glycosidase: α-L-arabinofuranosidase and β-D-

glucopyranosidase from A. niger to increase the aroma of wine. I. Enz. Micro.

Page 31: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

116

Tech. 22:298–304.

Sreenath HK and Joseph R (1982). Purification and properties of extracellular xylan

hydrolases of Streptomyces exfoliatus. Folia Microbiologica. 27:107-115.

Srinivasan MC and Rele MV (1999). Microbial xylanases for paper industry. Curr.

Sci. 77:137–142.

Summner JB and Howell SF (1935). A method for determination of saccharase

activity. J. Biol. Chem. 108:51–54.

Sung WL, Luk CK, Chan B, Wakarchuk W, Yaguchi M, Campbell R, Willick G,

Ishikawa K and Zahab DM (1995). Expression of Trichoderma reesei and

Trichoderma viride xylanases in Escherichia coli. Biochem. Cell Biol.

73:253–259.

Sunna A and Antranikian G (1997). Xylanolytic enzymes from fungi and bacteria.

Crit. Rev. Biotech. 17:39–67.

Tachaapaikoon C, Kyu KL and Ratanakhanokchai K (2006). Purification of xylanase

from alkaliphilic Bacillus sp. K-8 by using corn husk column. Process

Biochem. 41:2441–2445.

Takahashi-Ando N, Inaba M, Ohsato S, Igawa T, Usami R and Kimura M (2007).

Identification of multiple highly similar XIP-type xylanase inhibitor genes in

hexaploid wheat. Biochem. Biophys. Res. Commun. 360:880–884.

Takenishi S and Tsujisaka Y (1973). Purification and some properties of three

xylanases from Penicillium janthinellum Biourge. J. Ferment. Tech. 51:458–

463.

Tan LUL, Wong K KY and Saddler JN (1985). Functional characteristics of two D-

xylanases purified from Trichoderma harzianum. Enz. Micro. 7:431–436.

Tel-Zur N, Abbo S, Myslanbodski D and Mizarhi Y (1999). Modified CTAB

Page 32: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

117

procedure for DNA isolation from epiphytic Cacti of the genera Hylocereus

and Selenicereus (Cactaceae). Plant Mol. Biol. Reporter. 17:249.

Teplitsky A, Shulami S, Moryles S, Shoham Y and Shoham G. (2000).

Crystallization and preliminary X-ray analysis of an intracellular xylanase

from Bacillus stearothermophilus T-6. Acta Crystallogr. D: Biol. Crystallogr.

56:181–184.

Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTALW: improving the

senditivity of progressive multiple sequence alignment through sequence

weighting, position specific gap penalties and weight matrix choice. Nucleic

Acids Res. 22:4673.

Toda S, Suzuki H and Nisizawa K (1971). Some enzymic properties and substrate

specification of Trichoderma cellulase with special reference to their activity

towards xylan. J. Ferment. Tech. 41:499–521.

Torronen A, Harkki A and Rouvinen J (1994). Three dimensional structure of endo-

1,4-beta-xylanase II from Trichoderma reesei: two conformational states in

the active site. EMBO. J. 13:2493–2501.

Torronen A and Rouvinen J (1995). Structural comparison of two major endo-1,4-

xylanases from Trichoderma reesei. Biochem. 34:847–856.

Torronen A and Rouvinen J (1997). Structural and functional properties of low

molecular weight endo-1,4-beta-xylanases. J. Biotechnol. 57:137–149.

Towbin H, Staehelin T and Gordon J (1979). Electrophoretic transfer of proteins

from polyacrylamide gels to nitrocellulose sheets: procedure and some

applications. Proc. Natl. Acad. Sci. USA. 76:4350.

Triches Damaso M, Carolina MM, Andrade C and Pereira N (2002). Production and

properties of the cellulase-free xylanase from Thermomyces lanuginosus.

Page 33: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

118

Braz. J. Micro. 33:333-338.

Uffen RL (1997). Xylan degradation: a glimpse at microbial diversity. J. Ind.

Microbiol. Biotechnol. 19:1-6.

Vafiadi C, Christakopoulos P and Topakas E (2010). Purification, characterization

and mass spectrometric identification of two thermophilic xylanases from

Sporotrichum thermophile. Process Biochem. 45:419–424.

Van Pardon PA,Boomarim JCP, Selton GCM, Geerse C, Barug D, Debot PHM, and

Hernke G. (1992). Amplification of fugal endoxylanase in poutry Diets. In.

Visser: Beldman DG, Someren, Voragen AGJ (Eds), Xylan and Xylanases.

Elsevier Amsterdam. 371-378.

Van Tilbeurgh H and Claeyssens M (1985). Detection and differentiation of cellulase

components using low molecular mass fluorogenic substrates. FEBS Lett.

187:283–288.

Vieille C and Zeikus GJ (2001). Hyperthermophilic enzymes; sources, uses, and

molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 65:1–

42.

Viikari L, Kantelinen A, Sandquist J and Linko M (1994). Xylanases in bleaching:

from an idea to the industry. FEMS Microbiol. Rev. 13:338–350.

Vrsanska M, Gorbacheva IV, Kratky Z and Biely P (1982). Reaction pathways of

substrate degradation by an acidic endo- 1,4-beta-xylanase of Aspergillus

niger. Biochem. Biophys. Acta 704:114–122.

Wakarchuk WW, Campbell RL, Sung WL, Davoodi J and Yaguchi M (1994).

Mutational and crystallographic analyses of the active site residues of the

Bacillus circulans xylanase. Protein Sci. 3:467–475.

Wakarchuk WW, Sung WL, Campbell Robert L, Cunningham Anna, Watson David C

Page 34: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

119

and Yaguchi Makoto (1994). Thermostabilization of the Bacillus

circulansxylanase by the introduction of disulfide bonds. Protein Eng. 7:1379–

1386.

Wang SL, Yen YH, Shih IL, Chang AC, Chang WT, Wu WC and Chai YD (2003).

Production of xylanases from rice bran by Streptomyces actuosus A-151. Enz.

Micro. Tech. 33:917–925.

Wateewuthajarn K and Pinphanichakarn P (2000). Purification and characterization

of xylanases from Streptomyces sp. PC22. J. Sci. Res. Chula. Univ. 25:2000.

Whistler R and Masek E (1955). Enzymatic hydrolysis of xylan. J. Am. Chem. Soc.

77:1241–1243.

White A, Withers SG, Gilkes NR and and Rose DR (1994). Crystal structure of the

catalytic domain of the beta-1,4-glycanase cex from Cellulomonas fimi.

Biochem. 33:12546–12552.

Whistler RL, Richards EL (1970) Hemicelluloses. In: Pigman W, Horton D (eds) The

carbohydrates. Academic Press, NewYork. 447–469.

Winterhalter C, Heinrich P, Candussio A, Wich G and Liebl W (1995). Identification

of a novel cellulose-binding domain within the multidomain 120 KDa

xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima.

Mol. Microbiol. 15:431–444.

Winterhalter C and Liebl W (1995). Two extremely thermostable xylanases of the

hyperthermophilic bacterium Thermotoga maritima MSB8. Appl. Environ.

Microbiol. 61:1810–1815.

Wong KKY and Saddler JN (1992). Trichoderma xylanases, their properties and

purification. Crit. Rev. Biotech. 12:413–435.

Wong KKY, Tan LUL and Saddler JN (1988). Multiplicity of β-1,4- xylanase in

Page 35: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

120

microorganisms: functions and applications. Microbiol. Rev. 52:305–317.

Woodward J (1984). Xylanases: functions, properties and applications. Topics in

Enzyme and Ferment. Biotech. 8: 9-30.

Wouters J, Georis J, Engher D, Vandenhaute J, Dusart J, Frere JM, Depiereux E and

Charlier P (2001). Crystallographic analysis of family 11 endo-beta-1,4-

xylanase Xyl1 from Streptomyces sp. S38. Acta Crystallogr. D: Biol.

Crystallogr. 57:1813–1819.

Yang RC, MacKenzie CR, Bilous D and Narang SA (1989). Identification of two

distinct Bacillus circulans xylanases by molecular cloning of the genes and

expression in Escherichia coli. Appl Environ. Microbiol. 55:568–572.

York WS, Qin Q and Rose JKC (2004). Proteinaceous inhibitors of endo-β-

glucanases. Biochem. Biophys. Acta. 1696:223-233.

Yoshida S, Ono T, Matsuo N and Kusakabe I (1994). Structure of hardwood xylan

and specificity of Streptomyces beta-xylanase toward the xylan. Biosci.

Biotech. Biochem. 58:2068–2070.

Yoshida S , Satoh T, Shimokawa S, Oku T, Ito T and Kusakabe I (1994). Substrate

specificity of Streptomyces beta-xylanase toward glucoxylan. Biosci.

Biotechnol. Biochem. 58:1041–1044.

Yoshigi N, Taniguchi H and Sasaki T (1988). Purification and properties of a new

endocellulase from Robillarda sp. Y-20. Agric. Biol. Chem. 52:1389–1396.

Yoshioka H, Nagato N, Chavanich S, Nilubol N and Hayashida S (1981).

Purification and properties of thermostable xylanase from Talaromyces

byssochlamydoides YH-50. Agric. Biol. Chem. 45:2425–2432.

Zalewska-Sobczak J and Urbanek H (1981). Cellulase and xylan degrading enzyme

of Fusarium avenaceum. Arch. Microbiol. 129:247–250.

Page 36: References - Shodhgangashodhganga.inflibnet.ac.in › bitstream › 10603 › 20085 › ... · The Cacti of the United States and Canada, Ca: Stanford University Press, Stanford

121

Zeikus J, Vielle C and Savachenko A (1998). Thermozymes: biotechnology and

structure-function relationships. Extremophile. 2:179–183.

Zhiwei LV, Jinshui Yang and Yuan Hongli (2008). Production, purification and

characterization of an alkaliphilic endo-β-1, 4-xylanase from a microbial

community EMSD5. Enz. Microbiol. Tech. 43:343–348.

Zhu H, Paradis FW, Krell PJ, Phillips JP and Forsberg CW (1994). Enzymatic

specificities and modes of action of the two catalytic domains of the XynC

xylanase from Fibrobacter succinogenes S85. J. Bacteriol. 176:3885–3894.

Zhu W, Lu Y, Kong J and Ma G (1998). Production, partial purification and

characterization of xylanase from Trichosporon cutaneum SL409. Process

Biochem. 33:331–336.

Zverlov V, Piotukh K, Dakhova O, Velikodvorskaya G and Borriss R (1996). The

multidomain xylanase A of the hyperthermophilic bacterium Thermotoga

neapolitana is extremely thermoresistant. Appl. Microbiol. Biotechnol.

45:245–247.