PUBLICATIONS ON THE USE OF MICROGRID (1999 –July 2016) 2016. An integrated genomic approach identifies that the PI3K/AKT/FOXO pathway is involved in breast cancer tumor initiation. Linda Smit, Katrien Berns, Katherine Spence, W. David Ryder, Nik Zeps, Mandy Madiredjo, Roderick Beijersbergen, René Bernards, and Robert B. Clarke. Oncotarget, 19 January 2016; 7(3): 2596-2610. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4823058/ Peptide microarrays as diagnostic tool for cancer associated protease profiling Eric Dyrcz PhD Theses, 29 January 2016; Ruprecht- Karls -Universität, Heidelberg, 89 pp. (MGII) http://archiv.ub.uni-heidelberg.de/volltextserver/20237/1/Dyrcz_Diss_pdfA.pdf Clinical utility of reverse phase protein array for molecular classification of breast cancer. Ola H. Negm, Abir A. Muftah, Mohammed A. Aleskandarany, Mohamed R. Hamed, Dena AJ Ahmad, Christopher C. Nolan, Maria Diez-Rodriguez, Patrick J. Tighe, Ian O. Ellis, Emad A. Rakha, Andrew R. Green Breast Cancer Research and Treatment, January 2016; 155(1): 25-35. (MG610) Drop impact on a solid surface C. Josserand, and S. T. Thoroddsen. Annual Review of Fluid Mechanics, January 2016; 48: 365-391. A Double-Hybridization Approach for the Transcription-and Amplification-Free Detection of Specific mRNA on a Microarray. Michaela Haider, Thomas Haselgrübler, Alois Sonnleitner, Fritz Aberger, and Jan Hesse. Microarrays, 23 February 2016; 5(1): 5, 10 pp. (MGII) http://www.mdpi.com/2076-3905/5/1/5/htm Diagnosis of multiple sclerosis. Inventors: Howard L. Weiner, Irun R. Cohen, and Francisco J. Quintana. United States Patent: US 9267945 B2, Publication Date: 23 February 2016. https://www.google.com/patents/US9267945 The Effects of Sequence Variation on Genome-wide NRF2 Binding—New Target Genes and Regulatory SNPs. Suvi M. Kuosmanen, Sari Viitala, Tuomo Laitinen, Mikael Peräkylä, Petri Pölönen, Emilia Kansanen, Hanna Leinonen, Suresh Raju, Anke Wienecke-Baldacchino, Ale Närvänen, Antti Poso, Merja Heinäniemi, Sami Heikkinen, and Anna-Liisa Levonen Nucleic Acids Research, 29 February 2016; 44(4): 1760-1775. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770247/

Identification of novel biomarkers in chronic immune thrombocytopenia (ITP) by microarray-based serum protein profiling. Gürkan Bal, Matthias E. Futschik, Daniela Hartl, Frauke Ringel, Julian Kamhieh-Milz, Viktor Sterzer, Jörg D. Hoheisel, Mohamed SS Alhamdani, and Abdulgabar Salama. British Journal of Haematology, February 2016; 172(4): 602-615. AUTEN-67, an autophagy-enhancing drug candidate with potent antiaging and neuroprotective effects. Diána Papp, Tibor Kovács, Viktor Billes, Máté Varga, Anna Tarnóci, László Hackler Jr, László G. Puskás, Hanna Liliom, Krisztián Tárnok, Katalin Schlett, Adrienn Borsy, Zsolt Pádár, Attila L Kovács, Krisztina Hegedűs,Gábor Juhász, Marcell Komlós, Attila Erdős, Balázs Gulyás & Tibor Vellai Autophagy, February 2016; 12(2): 273-286. Pharmaceutical composition for inhibition of disease-inducing microRNAs. Inventors: Joacim Elmen, Phil Kearney, and Sakari Kauppinen. U.S. Patent Application: 20160060627 A1, Publication Date: 3 March 2016. (MGII) http://www.freepatentsonline.com/y2016/0060627.html Diagnosis of autoimmune diseases using a specific antibody profile. Inventors: Irun R. Cohen, Eytan Domany, Ittai Fattal, and Noam Shental. U.S. Patent Application: 2016/0069896 A1, Publication Date: 10 March 2016; (MG600) http://www.freepatentsonline.com/y2016/0069896.html Methods of identifying glycopeptides recognized by disease-associated auto-antibodies. Inventor: Edward Nudelman U.S. Patent Application: 2016/0084844 A1, Publication Date: 24 March 2016. http://www.freepatentsonline.com/y2016/0084844.html Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array. Alfonso Olaya-Abril, Ignacio Obando, and Manuel J. Rodríguez-Ortega. Data in Brief, March 2016; 6: 917-922 (MGII 610) http://www.sciencedirect.com/science/article/pii/S2352340916300099 Somaclonal variants of taro (Colocasia esculenta Schott) and yam (Dioscorea alata L.) are incorporated into farmers’ varietal portfolios in Vanuatu. H. Vandenbroucke, P. Mournet, H. Vignes, R. Malapa, M. F. Duval, and V. Lebot. Genetic Resources and Crop Evolution, March 2016; 63(3): 495-511 (MGII) High-throughput microarray mapping of cell wall polymers in roots and tubers during the viscosity-reducing process. Yuhong Huang, William G. Willats, Lene Lange, Yanling Jin, Yang Fang, Armando A. Salmeán, Henriette L. Pedersen, Peter Kamp Busk, and Hai Zhao. Biotechnology and Applied Biochemistry, March 2016; 63(2): 178-189. (MGII) Microarrays–new possibilities for detecting biological factors hazardous for humans and animals, and for use in environmental protection. Tomasz Mirski, Michał Bartoszcze, Agata Bielawska-Drózd, Romuald Gryko, Janusz Kocik, Marcin Niemcewicz, and Krzysztof Chomiczewski.

Annals of Agricultural and Environmental Medicine: AAEM, March 2016; 23(1): 30-36. (MGII) https://www.researchgate.net/profile/Michal_Bartoszcze3/publication/299395877_Microarrays_-_new_possibilities_for_detecting_biological_factors_hazardous_for_humans_and_animals_and_for_use_in_environmental_protection/links/56fd6b1008ae1408e15b2eb6.pdf High-throughput microarray mapping of cell wall polymers in roots and tubers during the viscosity reducing process. Yuhong Huang, William G. Willats, Lene Lange, Yanling Jin, Yang Fang, Armando A. Salmeán, Henriette L. Pedersen, Peter Kamp Busk, and Hai Zhao. Biotechnology and Applied Biochemistry, March-April 2016; 63(2):178-189 (MGII) Controllable heparin-based comb copolymers and their self-assembled nanoparticles for gene delivery. Jing-Jun Nie, Weiyi Zhao, Hao Hu, Bingran Yu, and Fujian Xu. ACS Applied Materials & Interfaces, 6 April 2016; 8 (13): 8376–8385. Integrated microfluidic approach for quantitative high-throughput measurements of transcription factor binding affinities. Yair Glick, Yaron Orenstein, Dana Chen, Dorit Avrahami, Tsaffrir Zor, Ron Shamir, and Doron Gerber. Nucleic Acids Research, 7 April 2015; 44(6): e51, 13 pp. (MG610) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824076/ Reaction vessel for carrying out array processes. Inventors: Torsten Schulz, Eugen Ermantraut, Ralf Ehricht, Klaus-Peter Möbius, Gerd Wagner, Joachim Fischer, and Thomas Ellinger. United States Patent: US 9310291 B2, Publication Date: 12 April 2016. (MGII) https://www.google.com/patents/US9310291 A microfluidic platform for transcription-and amplification-free detection of zepto-mole amounts of nucleic acid molecules. Reinhard Mayr, Michaela Haider, Roland Thünauer, Thomas Haselgrübler, Gerhard J. Schütz, Alois Sonnleitner, and Jan Hesse. Biosensors and Bioelectronics, 15 April 2016; 78: 1-6. (MGII) Pathogen receptor discovery with a microfluidic human membrane protein array. Yair Glick, Nir Drayman, Michal Pellach, Gregory Neveu, Jim Boonyaratanakornkit, Dorit Avrahami, Shirit Einav, Ariella Oppenheim, and Doron Gerber. Proceedings of the National Academy of Sciences, 19 April 2016; 113(16): 4344–4349 UCP1 (thermogenin) - inducing agents for use in the treatment of a disorder of the energy homeostasis. Inventors: Marcel Scheideler, Michael Karbiener, Ez-Zoubir Amri, Gérard Ailhaud, and Christian Dani. United States Patent: US 9320756 B2, Publication Date: 26 April 2016. (MGII) https://www.google.com/patents/US9320756 Micro-RNAs expression signature for determination of tumors origin. Inventors: Nitzan Rosenfeld, Shai Rosenwald, Iris Barshack, and Dvora Nass. U.S. Patent Application: 2016/0115546 A1, Publication Date: 28 April 2016. (MGII) http://www.freepatentsonline.com/y2016/0115546.html

An overview of innovations and industrial solutions in Protein Microarray Technology. Shabarni Gupta, K. P. Manubhai, Vishwesh Kulkarni, and Sanjeeva Srivastava. Proteomics, April 2016; 16(8): 1297–1308. (MGII) Microbial glycans as a target of human intelectin. Inventors: Laura L. Kiessling, Darryl A. Wesener, and Kittikhun Wangkanont. U.S. Patent Application: 2016/0131649 A1, Publication Date: 12 May 2016. (MGII) http://www.freepatentsonline.com/y2016/0131649.html DNA polymerase-α regulates the activation of type I interferons through cytosolic RNA: DNA synthesis Petro Starokadomskyy, Terry Gemelli, Jonathan J. Rios, Chao Xing, Richard C. Wang, Haiying Li, Vladislav Pokatayev et al. Igor Dozmorov, Shaheen Khan, Naoteru Miyata, Guadalupe Fraile, Prithvi Raj, Zhe Xu, Zigang Xu, Lin Ma, Zhimiao Lin, Huijun Wang, Yong Yang, Dan Ben-Amitai, Naama Orenstein, Huda Mussaffi, Eulalia Baselga, Gianluca Tadini, Eyal Grunebaum, Adrijan Sarajlija, Konrad Krzewski, Edward K Wakeland, Nan Yan, Maria Teresa de la Morena, Andrew R Zinn & Ezra Burstein Nature Immunology, May 2016; 17(5): 495–504. (MGII 610) http://www.nature.com/ni/journal/v17/n5/full/ni.3409.html Exploring host-pathogen interactions through genome wide protein microarray analysis. Luigi Scietti, Katia Sampieri, Irene Pinzuti, Erika Bartolini, Barbara Benucci, Alessia Liguori, Andreas F. Haag, Paola Lo Surdo, Werner Pansegrau, Vincenzo Nardi-Dei, Laura Santini, Seguinde Arora, Xavier Leber, Simonetta Rindi, Silvana Savino, Paolo Costantino, Domenico Maione, Marcello Merola, Pietro Speziale, Matthew J. Bottomley, Fabio Bagnoli, Vega Masignani, Mariagrazia Pizza, Meike Scharenberg, Jean-Marc Schlaeppi, Mikkel Nissum, and Sabrina Liberatori Scientific Reports, 15 June 2016; 6: 27996, 14 pp. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908583/ Immunological detection of Cronobacter and Salmonella in powdered infant formula by plasmonic label-free assay. Alexandra Morlay, F. Piat, Thibaut Mercey, and Yoann Roupioz. Letters in Applied Microbiology, June 2016; 62(6): 459-465. (MGII 600) The mannose receptor negatively modulates the Toll-like receptor 4–aryl hydrocarbon receptor–indoleamine 2, 3-dioxygenase axis in dendritic cells affecting T helper cell polarization. Fabián Salazar, Laurence Hall, Ola H. Negm, Dennis Awuah, Patrick J. Tighe, Farouk Shakib, and Amir M. Ghaemmaghami. Journal of Allergy and Clinical Immunology, June 2016; 137(6): 1841-1851. (MG 610) http://s3.amazonaws.com/academia.edu.documents/40951325/JACI_paper_1215.pdf?AWSAccessKeyId=AKIAJ56TQJRTWSMTNPEA&Expires=1466609545&Signature=gXM4Q36B9kbMV6lQ%2BhhXztHTYm8%3D&response-content-disposition=inline%3B%20filename%3DThe_mannose_receptor_negatively_modulate.pdf Label-and amplification-free electrochemical detection of bacterial ribosomal RNA. Grace Henihan, Holger Schulze, Damion K. Corrigan, Gerard Giraud, Jonathan G. Terry, Alison Hardie, Colin J. Campbell, Anthony J. Walton, Jason Crain, Ronald Pethig, Kate E. Templeton, Andrew R. Mount, Till T. Bachmann Biosensors and Bioelectronics, 15 July 2016; 81: 487-494. (MGII) A microfluidic multiwell chip for enzyme-free detection of mRNA from few cells.

Michaela Haider, Bozhi Ji, Thomas Haselgrübler, Alois Sonnleitner, Fritz Aberger, and Jan Hesse. Biosensors and Bioelectronics, 15 December 2016; 86: 20-26. (MGII) Lipid dip-pen nanolithography on self-assembled monolayers. Martynas Gavutis, Vytautas Navikas, Tomas Rakickas, Šarūnas Vaitekonis, and Ramūnas Valiokas. Journal of Micromechanics and Microengineering, January 2016; 26(2): 025016, ahead of the print Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Bat-Hen Ben Daniel, Esther Cattan, Chaim Wachtel, Dorit Avrahami, Yair Glick, Asaf Malichy, Doron Gerber, and Gad Miller. Physiologia Plantarum, 29 February 2016; ahead of the print (MG 610) Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one‐hybrid screens. Bat-Hen Ben Daniel, Esther Cattan, Chaim Wachtel, Dorit Avrahami, Yair Glick, Asaf Malichy, Doron Gerber, and Gad Miller. Physiologia Plantarum, 14 April 2016; ahead of the print. (MG610) The Effects of Sequence Variation on Genome-wide NRF2 Binding—New Target Genes and Regulatory SNPs. Suvi M. Kuosmanen, Sari Viitala, Tuomo Laitinen, Mikael Peräkylä, Petri Pölönen, Emilia Kansanen, Hanna Leinonen, Suresh Raju, Anke Wienecke-Baldacchino, Ale Närvänen, Antti Poso, Merja Heinäniemi, Sami Heikkinen and Anna-Liisa Levonen Nucleic Acids Research, 2016; gkw052. ahead of the print (MGII) http://nar.oxfordjournals.org/content/early/2016/01/29/nar.gkw052.full.pdf+html Immunological Detection of Cronobacter and Salmonella in Powdered Infant Formula by Plasmonic Label-Free Assay. Alexandra Morlay, Félix Piat, Thibaut Mercey, and Yoann Roupioz. Letters in Applied Microbiology, 2016; ahead of the print (MGII 600) Low-Cost Peptide Microarrays for Mapping Continuous Antibody Epitopes. Ryan McBride, Steven R. Head, Phillip Ordoukhanian, and Mansun Law. Methods Molecular Biology, 2016; 1352 (Peptide Microarrays: Methods & Protocols): 67-83. (MGII 600) 2015. Formation of iron-rich shelled structures by microbial communities. David C. Fernández-Remolar, Joan Santamaría, Ricardo Amils, Victor Parro, D. Gómez-Ortíz, Matthew RM Izawa, Neil R. Banerjee, Raúl Pérez Rodríguez, Nuria Rodríguez, and Nieves López-Martínez. Journal of Geophysical Research: Biogeosciences, 7 January 2015; 120(1): 147-168. (MGII) https://www.researchgate.net/profile/David_Fernandez-Remolar/publication/270547219_Formation_of_iron-rich_shelled_structures_(IRSS)_by_microbial_communities/links/55146cba0cf283ee0835e5ab.pdf

An Autoantibody Based Protein Microarray Blood Test to Enhance the Specificity of a Negative Screening Mammogram. T. M. Allweis, L. Strauss, Z. Malyutin, A. Bassein Kapov-Kagan, I. Novikov, T. B. Bevers, S. Iacobelli, M. T. Sandri, A. Bitterman, P. Engelman, B. Piura, M. Rosenberg, G. Yahalom Advances in Breast Cancer Research, 22 January 2015; 4(1): 22-38. (MGII) http://file.scirp.org/Html/3-2470090_53458.htm Formation of iron-rich shelled structures (IRSS) by microbial communities. David C. Fernández-Remolar, Joan Santamaría, Ricardo Amils, Victor Parro, D. Gómez-Ortíz, Matthew RM Izawa, Neil R. Banerjee, Raúl Pérez Rodríguez, Nuria Rodríguez, and Nieves López-Martínez. Journal of Geophysical Research: Biogeosciences, 28 January 2015; 120(1): 147-167 (MGII TAS) http://www.researchgate.net/profile/David_Fernandez-Remolar/publication/270547219_Formation_of_iron-rich_shelled_structures_(IRSS)_by_microbial_communities/links/55146cba0cf283ee0835e5ab.pdf Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Michael H. Wilson, Tara J. Holman, Iben Sørensen, Ester Cancho-Sanchez, Darren M. Wells, Ranjan Swarup, J. Paul Knox, William G. T. Willats, Susana Ubeda-Tomás, Michael Holdsworth, Malcolm J. Bennett, Kris Vissenberg, and T. Charlie Hodgman Frontiers in Cell and Developmental Biology, 20 February 2015; 3: 10, 12pp. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4335395/ Gene expression in the mammary gland of the tammar wallaby during the lactation cycle reveals conserved mechanisms regulating mammalian lactation. C. J. Vander Jagt, J. C. Whitley, B. G. Cocks, and M. E. Goddard. Reproduction, Fertility and Development, 23 February 2015; online publication. (MGII) http://www.publish.csiro.au/index.cfm?paper=RD14210 Functional proteomics screen enables enrichment of distinct cell types from human pancreatic islets Revital Sharivkin, Michael D. Walker, and Yoav Soen. PLoS One, 23 February 2015; 10(2): e0115100, 13 pp. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115100 Synthetic secondary chromosomes in Escherichia coli based on the replication origin of chromosome II in Vibrio cholerae Sonja J. Messerschmidt, Franziska S. Kemter, Daniel Schindler, and Torsten Waldminghaus. Biotechnology Journal, February 2015; 10(2): 302-314 http://www.researchgate.net/profile/Torsten_Waldminghaus/publication/267628231_Synthetic_secondary_chromosomes_in_Escherichia_coli_based_on_the_replication_origin_of_chromosome_II_in_Vibrio_cholerae/links/547ef7da0cf2d2200edeb296.pdf The mammalian target of rapamycin complex 1 (mTORC1) in breast cancer: the impact of oestrogen receptor and HER2 pathways. Dena A. Jerjees, Ola H. Negm, M. Layth Alabdullah, Sameer Mirza, Methaq Alkaabi, Mohamed R. Hameed, Rezvan Abduljabbar, Abir Muftah, Chris C. Nolan, Andrew R. Green, Patrick J. Tighe, Vimla Band, Ian O. Ellis, Emad A. Rakha Breast Cancer Research and Treatment, February 2015; 150(1): 91-103. (MG610)

https://www.researchgate.net/profile/Andrew_Green6/publication/272624489_The_mammalian_target_of_rapamycin_complex_1_(mTORC1)_in_breast_cancer_the_impact_of_oestrogen_receptor_and_HER2_pathways/links/55b6045d08ae092e9655ad63.pdf Polypeptide and immune modulation. Inventors: Denise Kelly, Angela Patterson, Edouard Monnais, and Imke Mulder. U.S. Patent Application: 20150071957 A1, Publication Date: 12 March 2015; (MGII TAS) https://www.google.com/patents/US20150071957 Ex vivo and in vitro production of pro-inflammatory cytokines in Blau syndrome. P. Galozzi, O. Negm, E. Greco, N. Alkhattabi, A. Gava, P. Sfriso, L. Fairclough, I. Todd, P. Tighe, L. Punzi. Reumatismo, 31 March 2015; 66(4): 277-284. (MGII) (we have pdf-file) The novel S59P mutation in the TNFRSF1A gene identified in an adult onset TNF receptor associated periodic syndrome (TRAPS) constitutively activates NF-κB pathway. Eliana Greco, Ada Aita, Paola Galozzi, Alessandra Gava, Paolo Sfriso, Ola H. Negm, Patrick Tighe, Francesco Caso, Filippo Navaglia, Emanuela Dazzo, Marzia De Bortoli, Alessandra Rampazzo, Laura Obici, Simona Donadei, Giampaolo Merlini, Mario Plebani, Ian Todd, Daniela Basso, Leonardo Punzi Arthritis Research & Therapy, 3 April 2015; 17(1): 93. 15 pp (MG610) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416318/ Carbohydrate microarray for the detection of glycan-protein interactions using metal-enhanced fluorescence. Jie Yang, Anne Moraillon, Aloysius Siriwardena, Rabah Boukherroub, François Ozanam, Anne Chantal Gouget-Laemmel, and Sabine Szunerits. Analytical Chemistry, 7 April 2015; 87 (7): 3721–3728 (MGII) Composition and methods for modulating cell proliferation and cell death. Inventors: Moshe Oren, Nina Raver-Shapira, Efi Marciano, and Yael Spector. United States Patent: US 9006206 B2, Publication Date: 14 April 2015; (MGII) https://www.google.com/patents/US9006206 Oxidative stress, mitochondrial damage, and cores in muscle from calsequestrin-1 knockout mice. Cecilia Paolini, Marco Quarta, Lan Wei-LaPierre, Antonio Michelucci, Alessandra Nori, Carlo Reggiani, Robert T. Dirksen, and Feliciano Protasi. Skeletal Muscle, 18 April 2015; 5(1): 10, 17 pp. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464246/ Clinical and biological significance of glucocorticoid receptor (GR) expression in breast cancer. Rezvan Abduljabbar, Ola H. Negm, Chun-Fui Lai, Dena A. Jerjees, Methaq Al-Kaabi, Mohamed R. Hamed, Patrick J. Tighe, Lakjaya Buluwela, Abhik Mukherjee, Andrew R. Green, Simak Ali, Emad A. Rakha, Ian O. Ellis Breast Cancer Research and Treatment, April 2015; 150(2): 335-346. (MG610) https://www.researchgate.net/publication/273467268_Clinical_and_biological_significance_of_glucocorticoid_receptor_GR_expression_in_breast_cancer Comparative analysis of genetic variation in Kava (Piper methysticum) assessed by SSR and DArT reveals zygotic foundation and clonal diversification.

Henri VandenBroucke, Pierre Mournet, Roger Malapa, Jean Christophe Glaszmann, Hana Chair, and Vincent Lebot. Genome, April 2015; 58(1): 1-11 (MGII) Microarray Core Facility: Array Production. In: The Scripps Research Institute. Web page. Spring 2015; (MGII) http://www.scripps.edu/california/research/dna-array/custom/arrayer.html Bacterium for use as a probiotic for nutritional and medical applications. Inventors: Denise Kelly, and Imke Mulder. U.S. Patent Application: 20150132264 A1; Publication Date: 14 May 2015; (MGII TAS) https://www.google.com/patents/US20150132264 Microarray transcriptional profiling of Arctic Mesorhizobium strain N33 at low temperature provides insights into cold adaption strategies. Abdollah-Fardin Ghobakhlou, Anne Johnston, Linda Harris, Hani Antoun, and Serge Laberge. BMC Genomics, 15 May 2015; 16(1): 383, 14 pp. (MG Compact) http://www.biomedcentral.com/1471-2164/16/383 Point-of-care diagnostics for ricin exposure. Mohamed Lemine Youba Diakite, Jérôme Rollin, Dorothée Jary, Jean Berthier, Chantal Mourton-Gilles, Didier Sauvaire, Cathy Philippe, Guillaume Delapierre, and Xavier Gidrol. Lab on a Chip, 21 May 2015; 15(10): 2308-2317. (MGII) Methods of isolating distinct pancreatic cell types. Inventors: Michael Walker, Yoav Soen, and Revital Sharivkin. U.S. Patent Application: 2015/0157668 A1, Publication Date: 11 June 2015; http://www.freepatentsonline.com/y2015/0157668.html Silicon nanonets for biological sensing applications with enhanced optical detection ability. P. Serre, V. Stambouli, M. Weidenhaupt, T. Baron, and C. Ternon. Biosensors and Bioelectronics, 15 June 2015; 68: 336-342. (MGII) https://elsevier.conference-services.net/viewsecurePDF.asp?conferenceID=3774&loc=files&type=paper&abstractID=831177 http://www.sciencedirect.com/science/article/pii/S0956566315000135 Tetrandrine reverses human cardiac myofibroblast activation and myocardial fibrosis. Guoqi Teng, Daniyil Svystonyuk, Holly EM Mewhort, Jeannine D. Turnbull, Darrell D. Belke, Henry J. Duff, and Paul WM Fedak. American Journal of Physiology-Heart & Circulatory Physiology, 15 June 2015; 308(12): H1564-H1574. MicroRNA biomarkers for human breast and lung cancer. Inventors: Ethan Dmitrovsky, Xi Liu, Sarah Freemantle, Lorenzo F. Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, and Mette Christensen. United States Patent: US 9056135 B2, Publication Date: 16 June 2015; (MGII) https://www.google.com/patents/US9056135 Design and fabrication of a flexible MEMS-based electro-mechanical sensor array for breast cancer diagnosis. Hardik J. Pandya, Kihan Park, and Jaydev P. Desai.

Journal of Micromechanics and Microengineering, 23 June 2015; 25(7): 075025. Genome-scale resources for Thermoanaerobacterium saccharolyticum. Devin H. Currie, Babu Raman, Christopher M. Gowen, Timothy J. Tschaplinski, Miriam L. Land, Steven D. Brown, Sean F. Covalla, Dawn M Klingeman, Zamin K Yang, Nancy L Engle, Courtney M Johnson, Miguel Rodriguez, A Joe Shaw,William R Kenealy, Lee R Lynd, Stephen S Fong, Jonathan R Mielenz, Brian H Davison, David A Hogsett and Christopher D Herring BMC Systems Biology, 26 June 2015; 9(1): 30, 15 pp. (MGII) http://www.biomedcentral.com/1752-0509/9/30 Gene expression signature for classification of kidney tumors. Inventors: Nitzan Rosenfeld, Yael Spector, Eddie Friedman, Zohar Dotan, and Shai Rosenwald. United States Patent: US 9068232 B2, Publication Date: 30 June 2015; (MGII) https://www.google.com/patents/US9068232 MicroRNA signature is indicative of long term prognosis in diffuse large B-cell lymphoma. Daniel Shepshelovich, Ron Ram, Orit Uziel, Michal Kushnir, Gila Lithwick-Yanai, Moshe Hoshen, Meora Feinmesser, Osnat Bairey, and Meir Lahav. Leukemia Research, June 2015; 39(6):632-637. (MGII) Immunogenic fragments of T-cell receptor constant domains and peptides derived therefrom. Inventors: Irun R. Cohen, and Francisco J. Quintana. United States Patent: US 9078843 B2, Publication Date: 14 July 2015. https://www.google.com/patents/US9078843 Immunological Biomarkers in Postinfectious Irritable Bowel Syndrome. Brian L. Pike, Katie Ann Paden, Ashley N. Alcala, Kayla M. Jaep, Robert P. Gormley, Alexander C. Maue, Benjamin S. Christmann, Charles O. Elson, Mark S. Riddle, and Chad K. Porter. Journal of Travel Medicine, July-August 2015; 22(4): 242-250. (MGII) Rapid Electrochemical Detection of New Delhi Metallo-beta-lactamase Genes To Enable Point-of-Care Testing of Carbapenem-Resistant Enterobacteriaceae. Jimmy Ming-Yuan Huang, Grace Henihan, Daniel Macdonald, Annette Michalowski, Kate Templeton, Alan P. Gibb, Holger Schulze, and Till T. Bachmann. Analytical Chemistry, 4 August 2015; 87(15): 7738-7745. (MGII) http://www.research.ed.ac.uk/portal/files/21536349/Rapid_electrochemical_detection_of_New_Delhi_metallo_beta_lactamase_genes_to_enable_point_of_care_testing_of_carbapenem_resistant_Enterobacteriaceae.pdf Method for detecting a target nucleic acid comprising two portions using probes having a first portion complementary to the first portion of the target nucleic acid and a second portion substantially complementary to the second portion of the target nucleic acid. Inventors: Shlomit Gilad, and Esther Meiri. United States Patent: US 9115389 B2, Publication Date: 25 August 2015; (MGII) https://www.google.com/patents/US9115389 Transposase interaction with the β sliding clamp: effects on insertion sequence proliferation and transposition rate. Héctor Díaz-Maldonado, Manuel J. Gómez, Mercedes Moreno-Paz, Patxi San Martín-Úriz, Ricardo Amils, Víctor Parro, and Francisco J. López de Saro.

Scientific Reports, 26 August 2015; 5: 13329, 13 pp. (MG TASII) http://www.nature.com/articles/srep13329 An integrated genome-wide approach to discover deregulated microRNAs in non-small cell lung cancer: Clinical significance of miR-23b-3p deregulation. Shahnaz Begum, Masamichi Hayashi, Takenori Ogawa, Fayez J. Jabboure, Mariana Brait, Evgeny Izumchenko, Sarit Tabak, Steven A. Ahrendt, William H. Westra, Wayne Koch, David Sidransky & Mohammad O. Hoque Scientific Reports, 28 August 2015; 5: 13236, 16 pp. (MGII) http://www.nature.com/articles/srep13236 Recognition of microbial glycans by human intelectin-1. Darryl A. Wesener, Kittikhun Wangkanont, Ryan McBride, Xuezheng Song, Matthew B. Kraft, Heather L. Hodges, Lucas C. Zarling, Rebecca A Splain, David F Smith, Richard D Cummings, James C Paulson, Katrina T Forest & Laura L Kiessling Nature Structural & Molecular Biology, August 2015; 22(8): 603-610. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526365/ Host factors and broadly neutralizing antibodies in South African women infected with HIV-1 subtype C. Cathrine Scheepers PhD Theses, 3 September 2015; University of the Witwatersrand, Johannesburg, 207 pp. (MGII) http://wiredspace.wits.ac.za/handle/10539/19680 FHL2 switches MITF from activator to repressor of Erbin expression during cardiac hypertrophy. Inbal Rachmin, Eden Amsalem, Eliahu Golomb, Ronen Beeri, Dan Gilon, Pengfei Fang, Hovav Nechushtan, Gillian Kay, Min Guo, Peter Li Yiqing, Roger S.-Y. Foo, David E. Fisher, Ehud Razin, Sagi Tshori International Journal of Cardiology, 15 September 2015; 195: 85-94. (MGII) https://www.researchgate.net/profile/Gillian_Kay/publication/277405857_FHL2_switches_MITF_from_activator_to_repressor_of_Erbin_expression_during_cardiac_hypertrophy/links/556d659b08aeccd7773bf44c.pdf Compositions and methods for the diagnosis and prognosis of mesothelioma. Inventors: Shai Rosenwald, Hila Benjamin, and Nitzan Rosenfeld. United States Patent: US 9133522 B2, Publication Date: 15 September 2015; (MGII) https://www.google.com/patents/US9133522 Two of Them Do It Better: Novel Serum Biomarkers Improve Autoimmune Hepatitis Diagnosis. Saveria Mazzara, Antonia Sinisi, Angela Cardaci, Riccardo Lorenzo Rossi, Luigi Muratori, Sergio Abrignani, and Mauro Bombaci. PLoS One, 16 September 2015; 10(9): e0137927, 20 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137927 Methods of identifying glycopeptides recognized by disease-associated auto-antibodies. Inventor: Edward Nudelman United States Patent: US 9140692 B1, Publication Date: 22 September 2015; https://www.google.com/patents/US9140692

Profiling Humoral Immune Responses to Clostridium difficile-Specific Antigens by Protein Microarray Analysis. Ola H. Negm, Mohamed R. Hamed, Elizabeth M. Dilnot, Clifford C. Shone, Izabela Marszalowska, Mark Lynch, Christine E. Loscher, Laura J. Edwards, Patrick J. Tighe, Mark H. Wilcox and Tanya M. Monagha Clinical and Vaccine Immunology, September 2015; 22(9): 1033-1039. (MG610) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4550668/ A kinome-targeted RNAi-based screen links FGF signaling to H2AX phosphorylation in response to radiation. Sami Benzina, Amandine Pitaval, Claudie Lemercier, Celine Lustremant, Vincent Frouin, Ning Wu, Alexandre Papine, Françoise Soussaline, Paul-Henri Romeo, and Xavier Gidrol. Cellular and Molecular Life Sciences, September 2015; 72(18): 3559-3573. (MGII) http://link.springer.com/article/10.1007/s00018-015-1901-7/fulltext.html Ruminococcal cellulosome systems from rumen to human. Yonit Ben David, Bareket Dassa, Ilya Borovok, Raphael Lamed, Nicole M. Koropatkin, Eric C. Martens, Bryan A. White, Annick Bernalier-Donadille, Sylvia H Duncan, Harry J. Flint, Edward A. Bayer and Sarah Moraïs Environmental Microbiology, September 2015; 17(9): 3407-3426. (MG610) http://www.researchgate.net/publication/274459590_Ruminococcal_cellulosome_systems_from_rumen_to_human_Human_ruminococcal_cellulosome A pneumococcal protein array as a platform to discover serodiagnostic antigens against infection. Alfonso Olaya-Abril, Irene Jiménez-Munguía, Lidia Gómez-Gascón, Ignacio Obando, and Manuel J. Rodríguez-Ortega. Molecular & Cellular Proteomics, 1 October 2015; 14(10): 2591-2608. (MG610) Integrated microfluidics for protein modification discovery. Meirav Noach-Hirsh, Hadas Nevenzal, Yair Glick, Evelin Chorni, Dorit Avrahami, Efrat Barbiro-Michaely, Doron Gerber, and Amit Tzur. Molecular & Cellular Proteomics, 1 October 2015; 14(10): 2824-2832. (MG610) Targeting microRNAs for the treatment of liver cancer. Inventors: C. Frank Bennett, Ayelet Chajut, Christine Esau, Eric Marcusson, and Noga Yerushalmi. United States Patent: US 9150857 B2, Publication Date: 6 October 2015; (MGII) https://www.google.com/patents/US9150857 On-the-Spot Immobilization of Quantum Dots, Graphene Oxide, and Proteins via Hydrophobins. Alfredo M. Gravagnuolo, Eden Morales-Narváez, Charlene Regina Santos Matos, Sara Longobardi, Paola Giardina, and Arben Merkoçi. Advanced Functional Materials, 14 October 2015; 25(38): 6084-6092. (MGII) Automatisiertes Mikrofluidik-System mit optischem Aufbau zur Untersuchung von Peptid-Antikörper-Wechselwirkungen im Arrayformat. L. K. Weber, A. Fischer, M. Soehindrijo, T. C. Förtsch, C. Bojnicic-Kninski, D. Althuon, S. M. Schillo, J. Striffler, F. F. Löffler, F. Breitling, A. Nesterov-Müller In: MikroSystemTechnik Kongress, 2015; 26-28 October 2015, Karlsruhe, (MGII) Identification of ecotype-specific marker genes for categorization of beer-spoiling Lactobacillus brevis.

Jürgen Behr, Andreas J. Geißler, Patrick Preissler, Armin Ehrenreich, Angel Angelov, and Rudi F. Vogel. Food Microbiology, October 2015; 51: 130-138. DArT-based characterisation of genetic diversity in a Miscanthus collection from Poland. Jie Tang, Maurycy Daroch, Andrzej Kilian, Stanislaw Jeżowski, Marta Pogrzeba, and Michal Mos. Planta, October 2015; 242(4): 985-996. https://www.researchgate.net/profile/Michal_Mos/publication/277781414_DArT-based_characterisation_of_genetic_diversity_in_a_Miscanthus_collection_from_Poland/links/55858d6008ae7bc2f44bde44.pdf Integrated microfluidics for protein modification discovery. Meirav Noach-Hirsh, Hadas Nevenzal, Yair Glick, Evelin Chorni, Dorit Avrahami, Efrat Barbiro-Michaely, Doron Gerber, and Amit Tzur. Molecular & Cellular Proteomics, October 2015; 14(10): 2824-2832. (MG610) Immunogenic fragments of t-cell receptor constant domains and peptides derived therefrom. Inventors: Irun R. Cohen, and Francisco Javier Quintana. U.S. Patent Application: 20150313977 A1, Publication Date: 5 November 2015. https://www.google.com/patents/US20150313977 Co-transcriptomes of initial interactions in vitro between streptococcus pneumoniae and human pleural mesothelial cells. Claire J. Heath, Maria del Mar Cendra, Alastair Watson, Jean-Philippe Auger, Anish Pandey, Paddy Tighe, and Myron Christodoulides. PLoS One, 13 November 2015; 10(11): e0142773, 26 pp. (MGII 600) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643877/ Multiplex Fluorescent Antibody Microarrays and Antibody Graphs for Microbial and Biomarker Detection in the Environment. Yolanda Blanco, Mercedes Moreno-Paz, Jacobo Aguirre, and Victor Parro. In: Springer Protocols Handbooks, 18 November 2015; Humana Press, pp. 1-18 (MGII TAS) High-throughgput phage-display screening in array format. Paula Díez, Ricardo Jara-Acevedo, María González-González, Juan Casado-Vela, Noelia Dasilva, Quentin Lécrevisse, Raquel Bartolomé, José Carlos Claros, Alfredo González, Ricardo López, Alberto Orfao, Manuel Fuentes Enzyme and Microbial Technology, November 2015; 79-80: 34-41. (MGII) http://www.researchgate.net/profile/Paula_Diez/publication/280492466_High-throughgput_Phage-Display_Screening_in_Array_Format/links/55b65c7d08aed621de033cfc.pdf Guanine polynucleotides are self-antigens for human natural autoantibodies and are significantly reduced in the human genome. Ittai Fattal, Noam Shental, Shifra Ben-Dor, Yair Molad, Armando Gabrielli, Elisheva Pokroy-Shapira, Shirly Oren, Avi Livneh, Pnina Langevitz, Gisele Zandman-Goddard, Ofer Sarig, Raanan Margalit, Uzi Gafte, Eytan Domany and Irun R. Cohen Immunology, November 2015; 146(3): 401-410. (MG600) Human seroreactivity to gut microbiota antigens. Benjamin S. Christmann, Thomas R. Abrahamsson, Charles N. Bernstein, L. Wayne Duck, Peter J. Mannon, Göran Berg, Bengt Björkstén, Maria C. Jenmalm, and Charles O. Elson.

Journal of Allergy and Clinical Immunology, November 2015; 136(5):1378-1386.e5 (MGII) Diversity Arrays Technology (DArT) Marker Platforms for Diversity Analysis and Linkage Mapping in a Complex Crop, the Octoploid Cultivated Strawberry (Fragaria× ananassa). José F. Sánchez-Sevilla, Aniko Horvath, Miguel A. Botella, Amèlia Gaston, Kevin Folta, Andrzej Kilian, Beatrice Denoyes, and Iraida Amaya. PLoS One, 16 December 2015; 10(12): e0144960, 22 pp. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682937/ Multi-scale genomic, transcriptomic and proteomic analysis of colorectal cancer cell lines to identify novel biomarkers. Romina Briffa, Inhwa Um, Dana Faratian, Ying Zhou, Arran K. Turnbull, Simon P. Langdon, and David J. Harrison. PLoS One, 17 December 2015; 10(12): e0144708, 29 pp. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4692059/ Detecting nucleic acids. Inventors: Shlomit Gilad, and Esther Meiri. U.S. Patent Application: 2015/0376695 A1, Publication Date: 31 December 2015. (MGII) http://www.freepatentsonline.com/y2015/0376695.html Gene expression in the mammary gland of the tammar wallaby during the lactation cycle reveals conserved mechanisms regulating mammalian lactation. C. J. Vander Jagt, J. C. Whitley, B. G. Cocks, and M. E. Goddard. Reproduction, Fertility and Development, 23 February 2015; ahead of print. (MGII) The mannose receptor negatively modulates the Toll-like receptor 4–aryl hydrocarbon receptor–indoleamine 2, 3-dioxygenase axis in dendritic cells affecting T helper cell polarization. Fabián Salazar, Laurence Hall, Ola H. Negm, Dennis Awuah, Patrick J. Tighe, Farouk Shakib, and Amir M. Ghaemmaghami. Journal of Allergy and Clinical Immunology, 16 December 2015; ahead of print (MGII 610) Utilisation of antibody microarrays for the selection of specific and informative antibodies from recombinant library binders of unknown quality. Janek Kibat, Thomas Schirrmann, Matthias J. Knape, Saskia Helmsing, Doris Meier, Michael Hust, Christoph Schröder, Daniela Bertinetti, Gerhard Winter, Khalid Pardes, Mia Funk, Andrea Vala, Nathalia Giese, Friedrich W. Herberg, Stefan Dübel, Jörg D. Hoheisel New Biotechnology, 17 December 2015; ahead of the print. (MGII 610) http://www.sciencedirect.com/science/article/pii/S187167841500271X The Glycan Array Platform as a Tool to Identify Carbohydrate Antigens. Li Xia, and Jeffrey C. Gildersleeve. Methods Molecular Biology, 2015; 1331(Carbohydrate-Based Vaccines): 27-40. (MGII) 2014. Chondroitin sulfate binding proteins and modulators thereof Inventors: Cristal I. Gama, Sarah E. Tully, Linda C. Hsieh-Wilson

United States Patent: 8623610 B2; Publication Date: 7 January 2014 (MGII) https://www.google.com/patents/US8623610 High density MicroArrays on Blu-ray discs for massive screening. Tania Arnandis-Chover, Sergi Morais, Miguel Ángel González-Martínez, Rosa Puchades, and Ángel Maquieira. Biosensors and Bioelectronics, 15 January 2014; 51(1): 109-114. (MGII) (we have pdf file) Optimization of peptide arrays for studying antibodies to hepatitis C virus continuous epitopes. Tinashe B. Ruwona, Ryan Mcbride, Rebecca Chappel, Steven R. Head, Phillip Ordoukhanian, Dennis R. Burton, and Mansun Law. Journal of Immunological Methods, 15 January 2014; 402(1): 35-42. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009380/ Antibody microarray as a proteomic tool for effective diagnosis and prediction of prognosis in cancer. Harish Srinivasan. PhD Theses, 21 January 2014; Ruperto-Carola University of Heidelberg, Germany, 98pp. (MGII) http://archiv.ub.uni-heidelberg.de/volltextserver/16167/1/Thesis%20Harish%20Srinivasan.pdf Method for the detection and/or identification of a microorganism. Inventors: Viraj N. Perera, and Benjamin N. Fry. United States Patent: 8632968 B2; Publication Date: January 21, 2014; (MGII Compact) https://www.google.com/patents/US8632968 Assessment of leaf/stem ratio in wheat straw feedstock and impact on enzymatic conversion. Heng Zhang, Jonatan U. Fangel, William GT Willats, Michael J. Selig, Jane Lindedam, Henning Jørgensen, and Claus Felby. GCB (Global Change Biology) Bioenergy, January 2014; 6(1): 90-96. (MGII) Study of the biological functions of the nonessential regulatory subunits of the protein phosphatase Glc7 in the yeast Saccharomyces cerevisiae. Jofre Ferrer-Dalmau Falgueras PhD Theses, 31 January 2014; Universitat Autònoma de Barcelona, Spain, 256 pp (MGII) http://www.tdx.cbuc.es/bitstream/handle/10803/130775/jfdf1de1.pdf?sequence=1 Screening and culturing device and methods for the use thereof Inventors: Marie Zhang, Justin Bingham, Naira Serobyan U.S. Patent Application: 2014/0038847A1; Publication Date: 6 February 2014 https://www.google.com/patents/US20140038847 Lipochitin oligosaccharides immobilized through oximes in glycan Microarrays bind LysM proteins. Nicolai N. Maolanon, Mickael Blaise, Kasper K. Sørensen, Mikkel B. Thygesen, Emiliano Cló, John T. Sullivan, Clive W. Ronson, Jens Stougaard, Ola Blixt, and Knud J. Jensen. ChemBioChem, 10 February 2014; 15(3): 425-434. (MGII) Die Rolle von miRNAs in der KRAS-Onkogen-vermittelten Tumorentstehung im Ovarialepithel. Alexander Gross PhD Theses, 14 February 2014; Freie Universität Berlin, Germany, 117 pp.

http://www.diss.fu-berlin.de/diss/servlets/MCRFileNodeServlet/FUDISS_derivate_000000014307/diss_a_gross.pdf Analysis of the involvement of exosomal miRNAs and proteins in the response of CRC cells to Cetuximab. Marco Maugeri PhD Theses, 14 February 2014; Università degli studi di Catania, Italy, 144 pp. (MG2) http://archivia.unict.it/handle/10761/1527 Compositions and methods for treatment of melanoma. Inventors: Eva Hernando, Moshe Hoshen, Iman Osman, Avital Gaziel-Sovran, and Miguel F. Segura. U.S. Patent Application: 20140050803 A1, Publication Date: 20 February 2014; (MGII) https://www.google.com/patents/US20140050803 Epstein–Barr virus antibodies mark systemic lupus erythematosus and scleroderma patients negative for anti-DNA. Ittai Fattal, Noam Shental, Yair Molad, Armando Gabrielli, Elisheva Pokroy-Shapira, Shirly Oren, Avi Livneh Pnina Langevitz, Rachel Pauzner, Ofer Sarig, Uzi Gafter, Eytan Domany and Irun R. Cohen Immunology, February 2014; 141(2): 276-285 (MG600) http://onlinelibrary.wiley.com/doi/10.1111/imm.12200/full New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20. Kimberly L. Keller, Barbara J. Rapp-Giles, Elizabeth S. Semkiw, Iris Porat, Steven D. Brown, and Judy D. Wall. Applied and Environmental Microbiology, February 2014; 80(3): 855-868. (MGII) http://aem.asm.org/content/80/3/855.full Method for the detection and/or identification of a microorganism. Inventors: Viraj Nawagamuwa Perera, and Benjamin Nicholas Fry US Patent Application: US 2014/0080735 A1; Publication Date: 20 March 2014; (MGII Compact) https://www.google.com/patents/US20140080735 Development of an antigen microarray for high throughput monoclonal antibody selection. Nicole Staudt, Nicole Müller-Sienerth, and Gavin J. Wright. Biochemical and Biophysical Research Communications, 21 March 2014; 445(4): 785-790. (MGII) http://www.sciencedirect.com/science/article/pii/S0006291X13020913 Particle immobilized coatings and uses thereof. Inventors: Patrick E. Guire, Kristin S. Taton, and John V. Wall. United States Patent: 8679454 B2; Publication Date: 25 March 2014; (MGII) https://www.google.com/patents/US8679454 Targeting microRNAs for the treatment of liver cancer. Inventors: C. Frank Bennett, Ayelet Chajut, Christine Esau, Eric Marcusson, and Noga Yerushalmi. United States Patent: 8680067 B2; Publication Date: 25 March 2014; (MGII) https://www.google.com/patents/US8680067 Evaluation of homo-and hetero-functionally activated glass surfaces for optimized antibody arrays.

María González-González, Raquel Bartolome, Ricardo Jara-Acevedo, Juan Casado-Vela, Noelia Dasilva, Sergio Matarraz, Jacinto García, J.A. Alcazar, J.M. Sayagues, Alberto Orfao, Manuel Fuentes Analytical Biochemistry, 1 April 2014; 450: 37-45. (MGII) (we have pdf-file) Genome-wide meta-analysis of maize heterosis reveals the potential role of additive gene expression at pericentromeric loci. Alexander Thiemann, Junjie Fu, Felix Seifert, Robert T. Grant-Downton, Tobias A. Schrag, Heike Pospisil, Matthias Frisch, Albrecht E. Melchinger, and Stefan Scholten. BMC Plant Biology, 2 April 2014; 14(1): 88, 14pp. (MGII) http://www.biomedcentral.com/content/pdf/1471-2229-14-88.pdf Protein Scaffolds for Antibody Mimics and Other Binding Proteins Inventors: Dasa Lipovsek, Richard W. Wagner, Robert G. Kuimelis US Patent Application: US 2014/0094595 A1; Publication Date: 03 April 2014 https://www.google.com/patents/US20140094595 Biomarkers for autoimmune liver diseases and uses thereof. Inventors: Sergio Abrignani, Mauro Bombaci, and Chiara Zingaretti. US Patent Application: US 2014/0106987 A1; Publication Date: 17 April 2014 (MGII) https://www.google.com/patents/US20140106987 Development of a DNA-Microarray for genotyping antibiotic resistance determinants in Acinetobacter baumannii Simon Dally PhD Theses, 29 April 2014; Universität Stuttgart, Germany, 122 pp. (MGII 610) http://elib.uni-stuttgart.de/opus/volltexte/2014/9325/pdf/Dissertation_Dally.pdf Cancer-associated autoantibodies to MUC1 and MUC4-A blinded case-control study of colorectal cancer in UK collaborative trial of ovarian cancer screening. Johannes W. Pedersen, Aleksandra Gentry-Maharaj, Alexander Nøstdal, Evangelia-Ourania Fourkala, Anne Dawnay, Matthew Burnell, Alexey Zaikin, Joy Burchell, Joyce Taylor Papadimitriou, Henrik Clausen, Ian Jacobs, Usha Menon and Hans H. Wandall International Journal of Cancer, 01 May 2014; 134(9): 2180-2188. (MGII) http://onlinelibrary.wiley.com/doi/10.1002/ijc.28538/full DNA polymerase. Inventors: Philipp Holliger, Farid Ghadessy, Marc D'Abbadie US Patent Application: US 2014/0127694 A1; Publication Date: 8 May 2014 https://www.google.com/patents/US20140127694 Análisis de la saliva de Ornithodoros moubata y producción de antígenos recombinantes para el desarrollo de test serológicos y vacunas anti-garrapata. Verónica Díaz Martín PhD Theses, 16 May 2014; Universidad de Salamanca, Spain, 208 pp. (MGII) http://digital.csic.es/handle/10261/101385 Antisense oligonucleotides for inhibition of microRNA-21. Inventors: Joacim Elmén, Phil Kearney, and Sakari Kauppinen. United States Patent: 8,729,250, Publication Date: 20 May 2014; (MGII)

https://www.google.com/patents/US8729250 Performance of a multiplexed serological microarray for the detection of antibodies against central nervous system pathogens. Anne J. Jääskeläinen, Sari M. Viitala, Satu Kurkela, Satu Hepojoki, Heidi Sillanpää, Hannimari Kallio-Kokko, Tomas Bergström Jukka Suni, Ale Närvänen, Olli Vapalahti, Antti Vaheri Journal of Microbiological Methods, May 2014; 100 (1): 27-31. (MGII) (we have pdf file) Analyse epigenetischer Effekte (microRNAs) in ehemaligen Wismutbeschäftigten. Georg Johnen, Thomas Brüning, D. G. Weber, Maria Gomolka. Vorhaben 3610S10001, May 2014; Laufzeit 01.12.2010 – 30.11.2011, 56 pp. (MG Compact) http://doris.bfs.de/jspui/bitstream/urn:nbn:de:0221-2014051311415/3/BfS_2014_3610S10001.pdf Antigen detection. Inventors: Colin Campbell, Peter Ghazal, Juraj Petrik, Janine Scott Robb United States Patent: 8748355 B2; Publication Date: 10 June 2014 (MGII) https://www.google.com/patents/US8748355 Microarray Multiplex Assay for the Simultaneous Detection and Discrimination of Influenza A and Influenza B Viruses. Mingyao Tian, Yufei Tian, Yang Li, Huijun Lu, Xiao Li, Chang Li, Fei Xue, and Ningyi Jin. Indian Journal of Microbiology, June 2014; 54(2): 211-217. (MG TAS) Prediction of recurrence of non muscle-invasive bladder cancer by means of a protein signature identified by antibody microarray analyses. Harish Srinivasan, Yves Allory, Martin Sill, Dimitri Vordos, Mohamed Saiel Saeed Alhamdani, Francois Radvanyi, Jörg D. Hoheisel, and Christoph Schröder. Proteomics, June 2014; 14(11): 1333-1342. Microbial glycan microarrays define key features of host-microbial interactions. Sean R. Stowell, Connie M. Arthur, Ryan McBride, Oren Berger, Nahid Razi, Jamie Heimburg-Molinaro, Lilian C. Rodrigues Jean-Philippe Gourdine, Alexander J Noll,Stephan von Gunten, David F Smith, Yuriy A Knirel, James C Paulson & Richard D Cummings Nature Chemical Biology, June 2014; 10(6): 470-476. Composition and methods for modulating cell proliferation and cell death. Inventors: Moshe Oren, Nina Raver-Shapira, Efi Marciano, and Yael Spector. United States Patent: US 8765702 B2; Publication Date: 1 July 2014. (MGII) https://www.google.com/patents/US8765702 A sensitive microfluidic platform for a high throughput DNA methylation assay. Maria Ronen, Dorit Avrahami, and Doron Gerber. Lab on a Chip, 7 July 2014; 14(13): 2354-2362. (MG610) Micromotor enhanced microarray technology for protein detection. Eden Morales-Narváez, Maria Guix, Mariana Medina-Sánchez, Carmen C. Mayorga-Martinez, and Arben Merkoçi. Small, 9 July 2014; 10(13): 2542-2548. (MGII)

Single-Stranded DNA Catalyzes Hybridization of PCR-Products to Microarray Capture Probes. Simon Dally, Steffen Rupp, Karin Lemuth, Stefan C. Hartmann, Ekkehard Hiller, Susanne M. Bailer, Cornelius Knabbe, and Jan Weile. PLoS One, 15 July 2014; 9(7): e102338, 9pp. (MGII 610) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0102338 Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants. Yannick Rossez, Ashleigh Holmes, Eliza B. Wolfson, David L. Gally, Arvind Mahajan, Henriette L. Pedersen, William GT Willats, Ian K. Toth, and Nicola J. Holden. Environmental Microbiology, July 2014; 16(7): 2181-2195. (MGII) (we have pdf-file) A pro-inflammatory signalome is constitutively activated by C33Y mutant TNF receptor 1 in TNF receptor-associated periodic syndrome (TRAPS). Ola H. Negm, Heiko A. Mannsperger, Elizabeth M. McDermott, Elizabeth Drewe, Richard J. Powell, Ian Todd, Lucy C. Fairclough, and Patrick J. Tighe. European Journal of Immunology, July 2014; 44(7): 2096-2110. (MGII 610) http://onlinelibrary.wiley.com/doi/10.1002/eji.201344328/full Pattern Triggered Immunity (PTI) in Tobacco: Isolation of Activated Genes Suggests Role of the Phenylpropanoid Pathway in Inhibition of Bacterial Pathogens. Ágnes Szatmári, Ágnes Zvara, Ágnes M. Móricz, Eszter Besenyei, Erika Szabó, Péter G. Ott, László G. Puskás, and Zoltán Bozsó. PLoS One, 7 August 2014; 9(8): e102869, 16pp. (MG TAS) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0102869 Involvement of MicroRNAs in the Regulation of Muscle Wasting during Catabolic Conditions. Ricardo José Soares, Stefano Cagnin, Francesco Chemello, Matteo Silvestrin, Antonio Musaro, Cristiano De Pitta, Gerolamo Lanfranchi, and Marco Sandri. Journal of Biological Chemistry, 8 August 2014; 289(32): 21909-21925. (MGII) http://www.jbc.org/content/289/32/21909.full.pdf+html Gene expression signature for classification of tissue of origin of tumor samples. Inventors: Ranit Aharonov, Nitzan Rosenfeld, and Shai Rosenwald. United States Patent: 8802599 B2, Publication Date: 12 August 2014. (MGII) https://www.google.com/patents/US8802599 Unveiling viral–host interactions within the ‘microbial dark matter’. Manuel Martínez-García, Fernando Santos, Mercedes Moreno-Paz, Víctor Parro, and Josefa Antón. Nature Communications, 14 August 2014; 5: 4542 Gene expression signature for classification of kidney tumors. Inventors: Nitzan Rosenfeld, Yael Spector, Eddie Friedman, and Zohar Dotan US Patent Application: US 20140243230 A1; Publication Date: 28 August 2014; (MGII) https://www.google.com/patents/US20140243230 Profile of secreted hydrolases, associated proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the degradation of hemicellulose. D. H. Currie, Adam M. Guss, C. D. Herring, Richard J. Giannone, Courtney M. Johnson, Patricia K. Lankford, Steven D. Brown, R. L. Hettich, and Lee R. Lynd.

Applied and Environmental Microbiology, August 2014; 80(16): 5001-5011. (MGII) http://aem.asm.org/content/80/16/5001.full Control of morphogenesis, protease secretion and gene expression in Candida albicans by the preferred nitrogen source ammonium. Nico Dunkel, Kajal Biswas, Ekkehard Hiller, Kurt Fellenberg, Somisetty V. Satheesh, Steffen Rupp, and Joachim Morschhäuser. Microbiology, August 2014; 160(8): 1599-1608. (MGII) Component-resolved diagnosis of wheat flour allergy in baker's asthma. Cristina Gómez-Casado, María Garrido-Arandia, Catia Pereira, Manuela Catarino, Víctor Parro, Alicia Armentia, Santiago Quirce Blanca Armentia,Paloma Barranco, Miguel Blanca, Paloma Campo, Araceli Díaz-Perales Journal of Allergy and Clinical Immunology, August 2014; 134(2): 480-483. (MGII TAS) Compositions and methods for prognosis and treatment of prostate cancer. Inventors: Ayelet Chajut, and Shai Rosenwald. United States Patent: 8822144 B2; Publication Date: 2 September 2014; (MGII) https://www.google.com/patents/US8822144 Composition and methods for modulating cell proliferation and cell death. Inventors: Moshe Oren, Nina Raver-Shapira, Efi Marciano, and Yael Spector. U.S. Patent Application: 2014/0256789 A1, Publication Date: 11 September 2014; (MGII) https://www.google.com/patents/US20140256789 Amplification of 2p as a genomic marker for transformation in lymphoma. Anna Kwiecinska, Koichi Ichimura, Mattias Berglund, Andrii Dinets, Luqman Sulaiman, V. Peter Collins, Catharina Larsson, Anna Porwit, and Svetlana Bajalica Lagercrantz. Genes, Chromosomes and Cancer, September 2014; 53(9): 750-768. (MGII) http://onlinelibrary.wiley.com/doi/10.1002/gcc.22184/full Development and Validation of Protein Microarray Technology for Simultaneous Inflammatory Mediator Detection in Human Sera. Senthooran Selvarajah, Ola H. Negm, Mohamed R. Hamed, Carolyn Tubby, Ian Todd, Patrick J. Tighe, Tim Harrison, and Lucy C. Fairclough. Mediators of Inflammation, 14 October 2014; 820304, 12pp. (MGII) http://europepmc.org/articles/pmc4213990 Methods for Lung Cancer Classification. Inventor: Gila Lithwick Yanai, and Hila Benjamin. US Patent Application: US 2014/0309123 A1; Publication Date: 16 October 16 2014; (MGII) http://www.freepatentsonline.com/y2014/0309123.html Cancer Diagnosis And Treatment. Inventor: Corrinne Lobe US Patent Application: US 2014/0315732 A1; Publication Date: 23 October 2014; (MGII) http://www.freepatentsonline.com/y2014/0315732.html Gene Expression Signature for Classification of Tissue of Origin of Tumor Samples. Inventors: Ranit Aharonov, Nitzan Rosenfeld, and Shai Rosenwald.

US Patent Application: US 2014/0315739 A1; Publication Date: 23 October 2014; (MGII) http://www.freepatentsonline.com/y2014/0315739.html Antigen Array and Diagnostic Uses Thereof. Inventors: Irun R. Cohen, Francisco Javier Quintana, Eytan Domany, Gad Elizur, and Peter H. Hagedorn. US Patent Application: US 2014/0315740 A1; Publication Date: 23 October 2014; http://www.freepatentsonline.com/y2014/0315740.html Method of Detecting Cancer Based on Glycan Biomarkers. Inventors: Linda C. Hsieh-Wilson, Wen Yi, and Jean-Luc Chaubard US Patent Application: US 2014/0323699, A1; Publication Date: 30 October 2014. http://www.freepatentsonline.com/y2014/0323699.html Elaborate cellulosome architecture of Acetivibrio cellulolyticus revealed by selective screening of cohesin–dockerin interactions. Yuval Hamberg, Vered Ruimy-Israeli, Bareket Dassa, Yoav Barak, Raphael Lamed, Kate Cameron, Carlos MGA Fontes, Edward A. Bayer, and Daniel B. Fried. PeerJ, 30 October 2014; 2: e636, 21 pp. (MGII) https://peerj.com/articles/636/ A DNA-based pattern classifier with in vitro learning and associative recall for genomic characterization and biosensing without explicit sequence knowledge. Ju Seok Lee, Junghuei Chen, Russell Deaton, and Jin-Woo Kim. Journal of Biological Engineering, 6 November 2014; 8(1): 25, 12 pp. (MGII) (we have .pdf file) Analysis of autoantibody profiles in osteoarthritis using comprehensive protein array concepts. Frauke Henjes, Lucı́a Lourido, Cristina Ruiz-Romero, Juan Fernandez-Tajes, Jochen M. Schwenk, Maria Gonzalez-Gonzalez, Francisco J. Blanco, Peter Nilsson, and Manuel Fuentes. Journal of Proteome Research, 7 November 2014; 13(11): 5218-5229 (MGII) (we have .pdf file) Diagnosis of Systemic Lupus Erythematosus. Inventors: Irun R. Cohen, Eytan Domany, Noam Shental, and Ittai Fattal. U.S. Patent Application: US 2014/0342939 A1, Publication Date: 20 November 2014. (MG600) http://www.freepatentsonline.com/y2014/0342939.html Screening DNA chip and event-specific multiplex PCR detection methods for biotech crops. Seong-Hun Lee. Journal of the Science of Food and Agriculture, November 2014; 94(14): 2856-2862. (MGII) Pemphigus vulgaris is characterized by low IgG reactivities to specific self-antigens along with high IgG reactivity to desmoglein 3. Ittai Fattal, Jacob Rimer, Noam Shental, Yair Molad, Armando Gabrielli, Avi Livneh, Ofer Sarig, Ilan Goldberg, Uzi Gafter, Eytan Domany and Irun R. Cohen Immunology, November 2014; 143(3): 374-380. (MG 600) ABCD2 Alters Peroxisome Proliferator-Activated Receptor α Signaling In Vitro, but Does Not Impair Responses to Fenofibrate Therapy in a Mouse Model of Diet-Induced Obesity. Xiaoxi Liu, Jingjing Liu, Shuang Liang, Agatha Schlüter, Stephane Fourcade, Stella Aslibekyan, Aurora Pujol, and Gregory A. Graf. Molecular Pharmacology, November 2014; 86(5): 505-513. (MGII)

Deciphering the Prokaryotic Community and Metabolisms in South African Deep-Mine Biofilms through Antibody Microarrays and Graph Theory. Yolanda Blanco, Luis A. Rivas, Antonio García-Moyano, Jacobo Aguirre, Patricia Cruz-Gil, Arantxa Palacín, Esta van Heerden, and Víctor Parro. PLoS One, 22 December 2014; 9(12): e114180, 26 pp. (MGII TAS) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0114180 Transcriptome Analysis of Enterococcus faecalis during Mammalian Infection Shows Cells Undergo Adaptation and Exist in a Stringent Response State. Kristi L. Frank, Cristina Colomer-Winter, Suzanne M. Grindle, José A. Lemos, Patrick M. Schlievert, and Gary M. Dunny. PLoS One, 29 December 2014; 9(12): e115839, 25 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115839 Generation of a neuro-specific microarray reveals novel differentially expressed noncoding RNAs in mouse models for neurodegenerative diseases. Ronald Gstir, Simon Schafferer, Marcel Scheideler, Matthias Misslinger, Matthias Griehl, Nina Daschil, Christian Humpel, Gerald J. Obermair, Claudia Schmuckermair, Joerg Striessnig, Bernhard E. Flucher and Alexander Hüttenhofer RNA, December 2014; 20(12): 1929-1943. (MGII) http://rnajournal.cshlp.org/content/20/12/1929.long?top=1 2013. The use of reverse phase protein arrays (RPPA) to explore protein expression variation within individual renal cell cancers. Fiach C. O'Mahony, Jyoti Nanda, Alexander Laird, Peter Mullen, Helen Caldwell, Ian M. Overton, Lel Eory, Marie O'Donnell, Dana Faratian, Thomas Powles, David J. Harrison, Grant D. Stewart JoVE (Journal of Visualized Experiments), 1 January 2013; 71: e50221. (MGII) http://www.jove.com/video/50221/the-use-reverse-phase-protein-arrays-rppa-to-explore-protein RACK1/Asc1p, a ribosomal node in cellular signaling. Nicole Rachfall, Kerstin Schmitt, Susanne Bandau, Nadine Smolinski, Armin Ehrenreich, Oliver Valerius, and Gerhard H. Braus. Molecular & Cellular Proteomics, 01 January 2013; 12(1): 87-105. (MGII) http://www.mcponline.org/content/12/1/87.full Early detection of cancer in the general population: a blinded case-control study of p53 autoantibodies in colorectal cancer. J. W. Pedersen, A. Gentry-Maharaj, E. O. Fourkala, A. Dawnay, M. Burnell, A. Zaikin, Anders Elm Pedersen, I. Jacobs, U. Menon, and H. H. Wandall. British Journal of Cancer, 15 January 2013; 108(1): 107-114. (MGII) http://www.nature.com/bjc/journal/v108/n1/full/bjc2012517a.html A family of secreted pathogenesis-related proteins in Candida albicans.

Marc Röhm, E. Lindemann, E. Hiller, David Ermert, K. Lemuth, D. Trkulja, O. Sogukpinar, H. Brunner, S. Rupp, C. F. Urban and K. Sohn . Molecular Microbiology, January 2013; 87(1): 132-151 (MGII) http://onlinelibrary.wiley.com/doi/10.1111/mmi.12087/full 3D in vitro Living Systems for Biological Application. Hossein Hosseinkhani. ALTEX Proceedings, January 2013; 2: Proceedings of Animal Alternatives in Teaching, Toxicity Testing and Medicine, 6 pp. (MGII TAS) http://www.altex.ch/resources/rISC_003_Hossein1.pdf Transcript and protein profiling identifies signaling, growth arrest, apoptosis, and NF-κB survival signatures following GNRH receptor activation. Colette Meyer, Andrew H. Sims, Kevin Morgan, Beth Harrison, Morwenna Muir, Jianing Bai, Dana Faratian, Robert P. Millar, and Simon P. Langdon. Endocrine-Related Cancer, 1 February 2013; 20(1): 123-136. http://erc.endocrinology-journals.org/content/20/1/123.full Diagnosis of systemic lupus erythematosus (SLE). Irun R. Cohen, Eytan Domany, Noam Shental, and Ittai Fattal. U.S. Patent Application: 20130035254 A1, Publication date: 7 February 2013; (MG600) https://www.google.com/patents/US20130035254 DNA microarray analysis of expression of growth phase-responsive genes in antibiotic-producing Streptomyces sp. KH29. Ki-Hyeong Rhee, Yeong-Ho Choe, Byeong-Soo Kim, and Keyong-Ho Lee. African Journal of Microbiology Research, 26 February 2013; 7(9): 765-770. (MGII) (we have .pdf file) Surface-activated microtiter-plate microarray for simultaneous CRP quantification and viral antibody detection. Sari M. Viitala, Anne J. Jääskeläinen, Eira Kelo, Helena Sirola, Kirsi Moilanen, Jukka Suni, Antti Vaheri, Olli Vapalahti, and Ale Närvänen. Diagnostic Microbiology and Infectious Disease, February 2013; 75(2): 174-179. (MGII) Development of DArT markers for a linkage map of flue-cured tobacco. XiuPing Lu, YiJie Gui, BingGuang Xiao, YongPing Li, ZhiJun Tong, Yun Liu, XueFei Bai,WeiRen Wu, Ling Xia, Eric Huttner, Adrzej Kilian, LongJiang Fan Chinese Science Bulletin, February 2013; 58(6): 641-648. (MGII) http://download-v2.springer.com/static/pdf/355/art%253A10.1007%252Fs11434-012-5453-z.pdf?token2=exp=1429739502~acl=%2Fstatic%2Fpdf%2F355%2Fart%25253A10.1007%25252Fs11434-012-5453-z.pdf*~hmac=42735868608d0d3222d6f98c59910cb3c01f59aeb56b679920e900e8a90648d4 Microarray glycoprofiling of CA125 improves differential diagnosis of ovarian cancer. Kowa Chen, Aleksandra Gentry-Maharaj, Matthew Burnell, Catharina Steentoft, Lara Marcos-Silva, Ulla Mandel, Ian Jacobs, Anne Dawnay, Usha Menon, and Ola Blixt. Journal of Proteome Research, 1 March 2013; 12(3): 1408-1418. (MGII) (we have .pdf file) Methods for treating hematopoietic malignancies. Inventors: Judy Lieberman, and Francisco Navarro. United States Patent: 8389486 B2; Publication Date: 5 March 2013; (MGII)

https://www.google.com/patents/US8389486 Molecular signatures in Arabidopsis thaliana in response to insect attack and bacterial infection. Pankaj Barah, Per Winge, Anna Kusnierczyk, Diem Hong Tran, and Atle M. Bones. PLoS One, 25 March 2013; 8(3): e58987, 24 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058987 Allergen microarray Inventors: Andrea Crisanti, Tania Dottorini US Patent Application: US 2013/0079237 A1; Publication Date: 28 March 2013 (MG Compact) https://www.google.com/patents/US20130079237 COPD is associated with production of autoantibodies to a broad spectrum of self-antigens, correlative with disease phenotype. Thomas A. Packard, Quan Z. Li, Gregory P. Cosgrove, Russell P. Bowler, and John C. Cambier. Immunologic Research, March 2013; 55(1-3): 48-57. (MG 610) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919062/ Concentration–response relationships and temporal patterns in hepatic gene expression of Chinook salmon (Oncorhynchus tshawytscha) exposed to sewage. H. L. Osachoff, G. C. Van Aggelen, T. P. Mommsen, and C. J. Kennedy. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, March 2013; 8(1): 32-44. (MGII) (we have pdf-file) Carbohydrate binding and gene expression by in vitro and in vivo propagated Campylobacter jejuni after Immunomagnetic Separation. Rebecca M. King, Christopher J. Day, Lauren E. Hartley‐Tassell, Ian F. Connerton, Joe Tiralongo, Michael A. McGuckin, and Victoria Korolik. Journal of Basic Microbiology, March 2013; 53(3): 240-250. (MGII) Arraying Processes. Robert S. Matson In: Applying Genomic and Proteomic Microarray Technology in Drug Discovery, Second Edition, 13 March 2013; CRC Press, Boca Raton, FL, 322 pp Les puces à ADN en virologie: concepts de base et applications pour la détection des virus. Nicolas Berthet, Tatiana Vallaeys, Antoine Gessain, and Jean-Claude Manuguerra. Virologie, March-April 2013; 17(2): 61-80. http://www.jle.com/fr/revues/vir/e-docs/les_puces_a_adn_en_virologie_concepts_de_base_et_applications_pour_la_detection_des_virus_296181/article.phtml?tab=texte Detecting Low-Affinity Extracellular Protein Interactions Using Protein Microarrays. Yi Sun, and Gavin J. Wright. Current Protocols in Protein Science, 1 April 2013; ps2705s72: 27-5. (MGII) Obesity-associated autoantibody production requires AIM to retain the immunoglobulin M immune complex on follicular dendritic cells.

Satoko Arai, Natsumi Maehara, Yoshihiro Iwamura, Shin-ichiro Honda, Katsuhiko Nakashima, Toshihiro Kai, Masato Ogishi, Kumiko Morita, Jun Kurokawa, Mayumi Mori, Yuji Motoi, Kensuke Miyake, Nobuyuki Matsuhashi, Ken-ichi Yamamura, Osamu Ohara, Akira Shibuya, Edward K. Wakeland, Quan-Zhen Li, Toru Miyazaki Cell Reports, 25 April 2013; 3(4): 1187-1198. (MGII 610) http://www.cell.com/cell-reports/fulltext/S2211-1247(13)00113-7 Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Ramiro Vilchez-Vargas, Robert Geffers, María Suárez-Diez, Ianina Conte, Agnes Waliczek, Vanessa Sabrina Kaser, Monika Kralova, Howard Junca, and Dietmar H. Pieper. Environmental Microbiology, April 2013; 15(4): 1016-1039. (MG TAS II) (we have .pdf file) Integrative systems approaches to study plant stress responses. Pankaj Barah PhD Theses, April 2013; Norwegian University of Science and Technology, Trondheim, 171 pp. (MGII) http://brage.bibsys.no/xmlui/handle/11250/245194 Mutant Pfu DNA polymerase Inventors: Phillip Holliger, Nicola Ramsay, Ann-Sofie Jemth United States Patent: 8435775 B2; Publication Date: 7 May 2013 https://www.google.com/patents/US8435775 Combination treatment for the treatment of hepatitis C virus infection. Inventors: Joacim Elmén United States Patent: 8440637 B2, Publication Date: 14 May 2013; (MGII) https://www.google.com/patents/US8440637 Utility, reliability and reproducibility of immunoassay multiplex kits. Paddy Tighe, Ola Negm, Ian Todd, and Lucy Fairclough. Methods, 15 May 2013; 61(1): 23-29. Screening methods, compositions identified thereby, tools useful for the identification thereof, and cell populations produced thereby. Inventors: Naira Serobyan, Justin Bingham, and Marie Zhang. U.S. Patent Application: 2013/0130376 A1, Publication Date: 23 May 2013; https://www.google.com/patents/US20130130376 Isolierung und funktionelle Charakterisierung neuartiger Hydrogenasen sowie synthetischer [FeS] Cluster Proteine. Jana Riethausen Ph.D. Theses, 27 May 2013; Heinrich-Heine-Universität Düsseldorf, Germany, 217 pp. http://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-27890/Riethausen_Dissertation_final.pdf Development of DArT marker platforms and genetic diversity assessment of the US collection of the new oilseed crop lesquerella and related species. Von Mark V. Cruz, Andrzej Kilian, and David A. Dierig. PLoS One, 28 May 2013; 8(5): e64062, 13 pp. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0064062#pone-0064062-g006

A DNA microarray for the detection of point mutations and copy number variation causing familial hypercholesterolemia in Europe. Marianne A. Stef, Lourdes Palacios, Estibaliz Olano-Martín, Carolyn Foe-A-Man, Laura van de Kerkhof, Lisette N. Klaaijsen, Araitz Molano, Ellen J. Schuurman, Diego Tejedor, and Joep C. Defesche. The Journal of Molecular Diagnostics, May 2013; 15(3): 362-372. (MGII) http://ac.els-cdn.com/S1525157813000421/1-s2.0-S1525157813000421-main.pdf?_tid=6fba1eba-dd43-11e4-be07-00000aab0f01&acdnat=1428424423_355efc451afcc07f422112e31cf56799 Product and method. Inventors: Praveen Sharma, Narinder Singh Sahni, and Anders Lonneborg. U.S. Patent Application: 20130143761 A1, Publication Date: 6 June 2013. (MGII) https://www.google.com/patents/US20130143761 Simultaneous Detection of Different MicroRNA Types Using the ZIP-Code Array System. Sonja U. Weishaupt, Steffen Rupp, and Karin Lemuth. Journal of Nucleic Acids, June 2013; 496425, 13pp (MGII) http://www.hindawi.com/journals/jna/2013/496425/ Partial resistance to clubroot in Arabidopsis is based on changes in the host primary metabolism and targeted cell division and expansion capacity. Mélanie Jubault, Christine Lariagon, Ludivine Taconnat, Jean-Pierre Renou, Antoine Gravot, Régine Delourme, and Maria J. Manzanares-Dauleux. Functional & Integrative Genomics, June 2013; 13(2): 191-205. (MGII TAS) http://link.springer.com/article/10.1007/s10142-013-0312-9/fulltext.html Immunological detection of mellitic acid in the Atacama desert: Implication for organics detection on Mars. Yolanda Blanco, Luis A. Rivas, Marta Ruiz-Bermejo, and Víctor Parro. Icarus, June 2013; 224(2): 326-333. (MGII TAS) (we have pdf-file) Subtractive single label comparative hybridization. Inventors: Renius Owen, and Charles M. Strom. United States Patent: 8,492,089 B2; Publication Date: 23 July 2013. https://www.google.com/patents/US8492089 A gDNA microarray for genotyping Salvia species. Alexandra Olarte, Nitin Mantri, Gregory Nugent, Hans Wohlmuth, Chun Guang Li, Charlie Xue, and Edwin Pang. Molecular Biotechnology, July 2013, 54(3): 770-783. (MGII Compact) First report of fingerprinting dried herbal products using a subtractive diversity array. Linhai Niu, Nitin Mantri, Hans Wohlmuth, Chunguang Li, Charlie C. Xue, and Edwin Pang. Journal of Complementary & Integrative Medicine, July 2013; 10(1): 17-27. (MGII) (we have pdf-file) Characterisation of Streptococcus uberis from bovine milk. Salem Abureema PhD Theses, 31 July 2013; RMIT University, Melbourne, 249 pp. (MGII Compact) https://researchbank.rmit.edu.au/eserv/rmit:160459/Abureema.pdf

Subtracted Diversity Array Identifies Novel Molecular Markers Including Retrotransposons for Fingerprinting Echinacea Species. Alexandra Olarte, Nitin Mantri, Gregory Nugent, and Edwin CK Pang. PLoS One, 5 August 2013; 8(8): e70347, 12 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0070347 Transfection efficiency of DNA enhanced by association with salt-free catanionic vesicles. Lu Xu, Lei Feng, Renhao Dong, Jingcheng Hao, and Shuli Dong. Biomacromolecules, 12 August 2013; 14(8): 2781-2789. Combination of small molecule microarray and confocal microscopy techniques for live cell staining fluorescent dye discovery. Eszter Molnár, Soujanya Kuntam, Pradeep Kumar Reddy Cingaram, Begüm Peksel, Bhavyashree Suresh, Gabriella Fábián, Liliána Z. Fehér, Attila Bokros , Ágnes Medgyesi , Ferhan Ayaydin, László G. Puskás Molecules, 20 August 2013; 18(8): 9999-10013. (MGII) file:///C:/Documents%20and%20Settings/izlatkin/My%20Documents/Downloads/molecules-18-09999.pdf Solution-based methods for RNA expression profiling. Inventors: Todd R. Golub, Justin Lamb, David Peck, Jun Lu, and Eric Alexander Miska. U.S. Patent Application: 20130225432 A1, Publication Date: 29 August 2013; (MGII TAS) https://www.google.com/patents/US20130225432 Carbon anhydrase IX specific immune responses in patients with metastatic renal cell carcinoma potentially cured by interleukin-2 based immunotherapy. Susanne Rasmussen, Frede Donskov, Johannes W. Pedersen, Hans H. Wandall, Søren Buus, Mikkel Harndahl, Peter Braendstrup, Mogens H. Claesson, and Anders Elm Pedersen. Immunopharmacology and Immunotoxicology, August 2013; 35(4): 487-496. (MGII) (we have pdf-file) High-throughput profiling of anti-glycan humoral responses to SIV vaccination and challenge. Christopher T. Campbell, Sean R. Llewellyn, Thorsten Damberg, Ian L. Morgan, Marjorie Robert-Guroff, and Jeffrey C. Gildersleeve. PLoS One, 23 September 2013, corrected 03 December 2013; 8(9): e75302, 12 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075302#pone-0075302-g007 http://journals.plos.org/plosone/article?id=10.1371/annotation/fd9f4a65-3f27-46cd-8ed0-6c9b8ba7f83b DNA microarray-based detection of antibiotic resistance genes of human isolates of Escherichia coli in Nigeria. Chijioke A. Nsofor, Christian U. Iroegbu, Douglas R. Call, and Margaret A. Davies. African Journal of Bacteriology Research, September 2013; 5(6): 68-75. (MGII) http://www.academicjournals.org/article/article1380024260_Nsofor%20et%20al.pdf Construction of integrated linkage map of a recombinant inbred line population of white lupin (Lupinus albus L.). Cina Ann Vipin, David J. Luckett, John DI Harper, Gavin J. Ash, Andrzej Kilian, Simon R. Ellwood, Huyen TT Phan, and Harsh Raman. Breeding Science, September 2013; 63(3): 292-300 (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3770556/ Linkage maps of lowland and upland tetraploid switchgrass ecotypes.

Desalegn Serba, Limin Wu, Guillaume Daverdin, Bochra A. Bahri, Xuewen Wang, Andrzej Kilian, Joseph H. Bouton, E. Charles Brummer, Malay C. Saha, and Katrien M. Devos. BioEnergy Research, September 2013; 6(3): 953-965. http://link.springer.com/article/10.1007/s12155-013-9315-6/fulltext.html Methods for Distinguishing Between Lung Squamous Carcinoma and Other Non Small Cell Lung Cancers. Inventors: Ranit Aharonov, Nitzan Rosenfeld, Shai Rosenwald, Hila Benjamin United States Patent: 8563252 B2; Publication Date: 22 October 2013; (MGII) file:///C:/Documents%20and%20Settings/izlatkin/My%20Documents/Downloads/US8563252.pdf Compositions and methods for treatment of ovarian cancer. Inventor: Noga Yerushalmi U.S. Patent Application: 2013/0289098 A1, Publication Date: 31 October 2013; (MGII) https://www.google.com/patents/US20130289098 Diverse IgG serum response to novel glycopeptide epitopes detected within immunodominant stretches of Epstein-Barr virus glycoprotein 350/220: diagnostic potential of O-glycopeptide microarrays. Isotta D’Arrigo, Emiliano Cló, Tomas Bergström, Sigvard Olofsson, and Ola Blixt. Glycoconjugate Journal, October 2013; 30(7): 633-640. (MGII) DNA microarray for genotyping antibiotic resistance determinants in Acinetobacter baumannii clinical isolates. Simon Dally, Karin Lemuth, Martin Kaase, Steffen Rupp, Cornelius Knabbe, and Jan Weile. Antimicrobial Agents and Chemotherapy, October 2013; 57(10): 4761-4768. (MGII 610) http://aac.asm.org/content/57/10/4761.full Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries. Katie R. Boissonneault, Brooks M. Henningsen, Stephen S. Bates, Deborah L. Robertson, Sean Milton, Jerry Pelletier, Deborah A. Hogan, and David E. Housman. BMC Molecular Biology, 1 November 2013; 14(1): 25, 19 pp. (MGII 610 TAS) http://www.biomedcentral.com/1471-2199/14/25/ Polymerase. Inventors: Philipp Holliger, Nicola Ramsay, and Ann-Sofie Jemth. U.S. Patent Application: 2013/0295559 A1, Publication Date: 7 November 2013; https://www.google.com/patents/US20130295559 microRNA Biomarkers for Human Breast and Lung Cancer. Inventors: Ethan Dmitrovsky, Xi Liu, Sarah Freemantle, Lorenzo F. Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, and Mette Christensen. U.S. Patent Application: 2013/0296399 A1, Publication Date: 7 November 2013; (MGII) https://www.google.com/patents/US20130296399 Proteome variations in pancreatic stellate cells upon stimulation with proinflammatory factors. Aseel J. Marzoq, Nathalia Giese, Jörg D. Hoheisel, and Mohamed Saiel Saeed Alhamdani. Journal of Biological Chemistry, 8 November 2013; 288(45): 32517-32527. (MG2) http://www.jbc.org/content/288/45/32517.full

Methods and compositions for diagnosing complications of pregnancy Inventors: Yaron Goren, Shlomit Gilad, Moshe Hod, and Yariv Yogev United States Patent: 8580503 B2; Publication Date: 12 November 2013; (MGII) https://www.google.com/patents/US8580503 Agents, compositions and methods for treating pathologies in which regulating an ache-associated biological pathway is beneficial. Inventors: Hermona Soreq, Iftach Shaked, Ran Avni, and Ari Meerson. US Patent Application: US 2013/0317092A1; Publication Date: 28 November 2013 https://www.google.com/patents/US20130317092 Resistance to anthracnose is decreased by tissue culture but increased with longer acclimation in the resistant strawberry cultivar. Kiyoshi Namai, Yuta Matsushima, Masaji Morishima, Masayuki Amagai, and Tomohide Natsuaki. Journal of General Plant Pathology, November 2013; 79(6): 402-411. (MGII) Identificació de noves funcions de les proteïnes cinases Pkh en el llevat Saccharomyces cerevisiae. Anna Bahí Salavedra PhD Theses, November 2014; Universitat Autònoma de Barcelona, Spain, 260 pp. (MGII) http://ddd.uab.cat/pub/tesis/2013/hdl_10803_129117/abs1d1.pdf Identification of transcription factors potentially involved in the juvenile to adult phase transition in Citrus. Mari-Cruz Castillo, Javier Forment, José Gadea, Jose Luis Carrasco, José Juarez, Luís Navarro, and Gema Ancillo. Annals of Botany, November 2013; 112(7): 1371-1381. (MGII) http://aob.oxfordjournals.org/content/112/7/1371.full.pdf+html Dual role of the caspase enzymes in satellite cells from aged and young subjects. S. Fulle, S. Sancilio, R. Mancinelli, V. Gatta, and R. Di Pietro. Cell Death & Disease, 12 December 2013; 4(12): e955, 10 pp. (MGII) http://www.nature.com/cddis/journal/v4/n12/pdf/cddis2013472a.pdf Ucp1 (thermogenin)-inducing agents for use in the treatment of a disorder of the energy homeostasis. Inventors: Marcel Scheideler, Michael Karbiener, Ez-Zoubir Amri, Gérard Ailhaud, and Christian Dani. U.S. Patent Application: 2013/0331440 A1, Publication Date: 12 December 2013. (MGII) https://www.google.com/patents/US20130331440 Detection of antibiotic resistance genes of Escherichia coli from domestic livestock in South East Nigeria with DNA microarray. Chijioke A. Nsofor, Christian U. Iroegbu2 Douglas R. Call, and Margaret A. Davies. Journal of Cell and Animal Biology, December 2013; 7(12): 149-163. (MGII) http://www.academicjournals.org/article/article1385548398_Nsofor%20et%20al.pdf Characterization of ripening-associated genes using a tomato DNA macroarray, 1-methylcyclopropene, and ripening-impaired mutants. Rui Yan, Naoki Yokotani, Tatsuya Yamaoka, Kohichiro Ushijima, Ryohei Nakano, Kentaro Yano, Koh Aoki, and Yasutaka Kubo.

Postharvest Biology and Technology, December 2013, 86: 159-170. (MGII) Plasma protein analysis of patients with different B-cell lymphomas using high-content antibody microarrays. Christoph Schröder, Harish Srinivasan, Martin Sill, Jakob Linseisen, Kurt Fellenberg, Nikolaus Becker, Alexandra Nieters, and Jörg D. Hoheisel. Proteomics-Clinical Applications, December 2013; 7(11-12): 802-812. The kinase mTOR modulates the antibody response to provide cross-protective immunity to lethal infection with influenza virus. Rachael Keating, Tomer Hertz, Marie Wehenkel, Tarsha L. Harris, Benjamin A. Edwards, Jennifer L. McClaren, Scott A. Brown, Sherri Surman, Zachary S. Wilson, Philip Bradley, Julia Hurwitz, Hongbo Chi, Peter C. Doherty, Paul G. Thomas, and Maureen A. McGargill Nature Immunology, December 2013; 14(12): 1266-1276. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3883080/pdf/nihms524701.pdf Clinical Applications of BAC Array-CGH to the Study of Diffuse Large B-Cell Lymphomas. Cristina Robledo, Juan Luis García, and Jesús M. Hernández. Methods in Molecular Biology, 2013(01/15/13); 973 (Array Comparative Genomic Hybridization): 121-145. (MGII). Synthesis of O-glycopeptides and construction of glycopeptide microarrays. Ola Blixt, and Emiliano Cló. Methods in Molecular Biology, 2013(6/20/13); 1047 (Peptide Synthesis & Applications): 201-214 (MGII) Chemo-enzymatic production of O-glycopeptides for the detection of serum glycopeptide antibodies. Alexander Nøstdal, and Hans H. Wandall. Methods in Molecular Biology, 2013 (7/19/13); 1061 (Immunoproteomics): 167-179. (MGII) Characterization of allergens from several tree nuts and their role in plant food allergy Cátia Liliana Morais Pereira MS Theses, 2013, Universidade de Lisboa, Portugal, 61 pp. (MGII TAS) http://repositorio.ul.pt/bitstream/10451/11516/1/TESE_CatiaPereira_MCQTA_retificada.pdf Sensitization profiles and cross-reactivity among plant allergens. Molecular mechanisms of food allergy development and the role of enhancers. Cristina Gomez Casado PhD Theses, 2013; Universidad Polytechnica de Madrid, Spain, 193 pp. (MGII TAS) http://oa.upm.es/22569/ 2012. Design of a covalently bonded glycosphingolipid microarray. Emma Arigi, Ola Blixt, Karsten Buschard, Henrik Clausen, and Steven B. Levery. Glycoconjugate Journal, January 2012; 29(1): 1-12. (MGII)

Differential gene expression analysis in Enchytraeus albidus exposed to natural and chemical stressors at different exposure periods. Sara C. Novais, Clara F. Howcroft, Laura Carreto, Patrícia M. Pereira, Manuel AS Santos, Wim De Coen, Amadeu MVM Soares, and Mónica JB Amorim. Ecotoxicology, January 2012; 21(1): 213-224. (MGII Compact) (we have pdf-file) Antibody microarray-based cellular oncoproteomics. Mohamed Saiel Saeed Alhamdani PhD Theses, 31 January 2012; Ruperto-Carola University of Heidelberg, 153 pp (MG2) http://archiv.ub.uni-heidelberg.de/volltextserver/13638/1/Alhamdani_Thesis.pdf Oligonucleotides for cancer diagnosis. Inventors: Praveen Sharma, and Anders Lönneborg. United States Patent: 8105773 B2, Publication Date: 31 January 2012; (MGII) https://www.google.com/patents/US8105773 Effect of single post-ovulatory administration of levonorgestrel on gene expression profile during the receptive period of the human endometrium. Macarena F. Vargas, Alejandro A. Tapia-Pizarro, Soledad P. Henriquez, Marisol Quezada, Ana Maria Salvatierra, Gabriela Noe, David J. Munroe, Luis A. Velasquez, and Horacio B. Croxatto. Journal of Molecular Endocrinology, 1 February 2012; 48(1): 25-36. (MGII) http://jme.endocrinology-journals.org/content/48/1/25.full Preparing carbohydrate microarrays and conjugated nanoparticles Inventor: Xichun Zhou US Patent Application: US 20120040872 A1; Publication Date: 16 February 2012 (MG TAS) https://www.google.com/patents/US20120040872 Method for analyzing a glycomolecule. Inventors: Amor, Yehudit, Ofer Markman, Mirit Kolog Gulko, Albena Samokovlisky, Fredi Kleinman, Tal Alergand, Rakefet Rosenfeld, Ruth Maya, Sabina Rebe, Idil Kelson Kasuto, Haim Bangio United States Patent: 8119357 B2, Publication Date: 21 February 2012 https://www.google.com/patents/US8119357 Integration of Elf-4 into stem/progenitor and erythroid regulatory networks through locus-wide chromatin studies coupled with in vivo functional validation. Aileen M. Smith, Fernando J. Calero-Nieto, Judith Schütte, Sarah Kinston, Richard T. Timms, Nicola K. Wilson, Rebecca L. Hannah, Josette-Renee Landry, and Berthold Göttgens. Molecular and Cellular Biology, February 2012; 32(4): 763-773. (MGII) http://mcb.asm.org/content/32/4/763.long Diversity Array Technology Markers: Genetic Diversity Analyses and Linkage Map Construction in Rapeseed (Brassica napus L.) Harsh Raman, Rosy Raman, Matthew N. Nelson, M.N. Aslam, Ravikesavan Rajasekaran, Neil Wratten, Wallace A. Cowling, A. Kilian, Andrew G. Sharpe, and Joerg Schondelmaier DNA Research, February 2012; 19(1): 51-65. (MGII) http://dnaresearch.oxfordjournals.org/content/19/1/51.full.pdf+html Molecular aspects of dormancy in peach (Prunus persica [L.] Batsch.). Carmen Alice Leida

PhD Theses, February 2012; Universitat Politécnica Valéncia, Spain, 152 pp. (MGII) https://riunet.upv.es/bitstream/handle/10251/15864/tesisUPV3796.pdf?sequence=1 Functional genomic analysis unravels a metabolic-inflammatory interplay in adrenoleukodystrophy. Agatha Schlüter, Lluís Espinosa, Stéphane Fourcade, Jorge Galino, Eva López, Ekaterina Ilieva, Laia Morató, Muriel Asheuer, Ted Cook, Alistair McLaren, Juliet Reid, Fiona Kelly, Stewart Bates, Patrick Aubourg, Elena Galea and Aurora Pujol Human Molecular Genetics, 1 March 2012; 21(5): 1062-1077. (MGII) http://hmg.oxfordjournals.org/content/early/2011/11/17/hmg.ddr536.full.pdf+html Expression profiling of a heterogeneous population of ncRNAs employing a mixed DNA/LNA microarray. Konstantinia Skreka, Marek Zywicki, Michael Karbiener, Alexander Hüttenhofer, Marcel Scheideler, and Mathieu Rederstorff. Journal of Nucleic Acids, 6 March 2012; 283560, 10 pp. (MGII) http://www.hindawi.com/journals/jna/2012/283560/ A molecular cryptosystem for images by DNA computing. Sivan Shoshani, Ron Piran, Yoav Arava, and Ehud Keinan. Angewandte Chemie, 19 March 2012; 124(12): 2937-2941. (MGII) Biomarkers quantification with antibody arrays in cancer early detection. Andrea Gallotta, Enrico Orzes, and Giorgio Fassina. Clinics in Laboratory Medicine, March 2012; 32(1): 33-45. Effect of Cu-Nanoparticles versus Cu-salt in Enchytraeus albidus (Oligochaeta): differential gene expression through microarray analysis. Susana IL Gomes, Sara C. Novais, Janeck J. Scott-Fordsmand, Wim De Coen, Amadeu MVM Soares, and Monica JB Amorim. Comparative Biochemistry & Physiology, C: Toxicol & Pharmacol, March 2012; 155(2): 219-227 (MGII) Comparison of Denaturing Gradient Gel Electrophoresis and Microarray Technology for Detection of Betaproteobacteria Ammonia-Oxidizing Communities. Ann-Marie Fortuna, Kerry B. Gunning, and C. Wayne Honeycutt. Soil Science, March 2012; 177(3): 172-182. Assessment of the tumourigenic and metastatic properties of SK-MEL28 melanoma cells surviving electrochemotherapy with bleomycin. Vesna Todorovic, Gregor Sersa, Vid Mlakar, Damjan Glavac, and Maja Cemazar. Radiology and Oncology, March 2012; 46(1): 32-45. Bin mapping of tomato diversity array (DArT) markers to genomic regions of Solanum lycopersicum× Solanum pennellii introgression lines. Antoinette Van Schalkwyk, Peter Wenzl, Sandra Smit, Rosa Lopez-Cobollo, Andrzej Kilian, Gerard Bishop, Charles Hefer, and Dave K. Berger. Theoretical and Applied Genetics, March 2012; 124(5): 947-956. (MGII) http://link.springer.com/article/10.1007/s00122-011-1759-5/fulltext.html Differentiation of the seven major lyssavirus species by oligonucleotide microarray.

Jin Xi, Huancheng Guo, Ye Feng, Yunbin Xu, Mingfu Shao, Nan Su, Jiayu Wan, Jiping Li, and Changchun Tu. Journal of Clinical Microbiology, March 2012; 50(3): 619-625. (MGII) http://jcm.asm.org/content/50/3/619.full In situ assembling of protein microarrays Inventors: Deb K Chatterjee, Kalavathy Sitaraman, James L Hartley, Cassio Baptista, David J Munroe United States Patent: 8148302 B2; Publication Date: 3 April 2012; (MGII) https://www.google.com/patents/US8148302 Pharmaceutical Composition. Inventors: Joacim Elmén, Phil Kearney, and Sakari Kauppinen. U.S. Patent Application: 2012/0083596 A1, Publication Date: 5 April 2012; (MGII) https://www.google.com/patents/US20120083596 Rapid microarray processing using a disposable hybridization chamber with an integrated micropump. Jochen Rupp, Manuela Schmidt, Susanne Münch, Markus Cavalar, Ulf Steller, Jürgen Steigert, Michael Stumber Christian Dorrer, Peter Rothacher, Roland Zengerled and Martina Daub. Lab on a Chip, 7 April 2012; 12(7): 1384-1388. (MGII) https://www.imtek.de/data/lehrstuehle/app/dokumente/publikationen/publpdf2012/rupp-rapid-microarray-processing.pdf Fingerprinting the Asterid species using Subtracted Diversity Array reveals novel species-specific sequences. Nitin Mantri, Alexandra Olarte, Chun Guang Li, Charlie Xue, and Edwin CK Pang. PLoS One, 9 April 2012; 7(4): e34873, 8pp. (MGII Compact) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034873 Ethanol exposure induces up-regulation of specific microRNAs in zebrafish embryos. Ana Raquel Soares, Patrícia M. Pereira, Violeta Ferreira, Marisa Reverendo, João Simões, Ana Rita Bezerra, Gabriela R. Moura, and Manuel AS Santos. Toxicological Sciences, 16 April 2012; 127(1): 18–28 (2012) (MGII Compact) http://toxsci.oxfordjournals.org/content/127/1/18.full.pdf+html Drug delivery; microparticles immobilized on polymer surface. Inventors: Patrick E. Guire, Kristin S. Taton, and John V. Wall. United States Patent: 8158106 B2, Publication Date: 17 April 2012; (MGII) https://www.google.com/patents/US8158106 Pharmaceutical composition comprising anti-mirna antisense oligonucleotide. Inventors: Joacim Elmén, Phil Kearney, and Sakari Kauppinen. United States Patent: 8163708 B2, Publication Date: 24 April 2012; (MGII) https://www.google.com/patents/US8163708 Analysis of Tn antigenicity with a panel of new IgM and IgG1 monoclonal antibodies raised against leukemic cells. Ola Blixt, Olga I. Lavrova, Dmitriy V. Mazurov, Emiliano Cló, Stjepan K. Kračun, Nicolai V. Bovin, and Alexander V. Filatov. Glycobiology, April 2012; 22(4): 529-542. (MGII)

http://glycob.oxfordjournals.org/content/22/4/529.full Dynamic mRNA and miRNA profiling of CHO-K1 suspension cell cultures. Juan A. Hernández Bort, Matthias Hackl, Helga Höflmayer, Vaibhav Jadhav, Eva Harreither, Niraj Kumar, Wolfgang Ernst, Johannes Grillari, and Nicole Borth. Biotechnology Journal, April 2012; 7(4): 500-515. (MGII) http://www.researchgate.net/profile/Vaibhav_Jadhav2/publication/51487830_Dynamic_mRNA_and_miRNA_profiling_of_CHO-K1_suspension_cell_cultures/links/09e4150e455cf08369000000.pdf A benchmarked protein microarray-based platform for the identification of novel low-affinity extracellular protein interactions. Yi Sun, Marcus Gallagher-Jones, Colin Barker, and Gavin J. Wright. Analytical Biochemistry, 01 May 2012; 424(1): 45-53. (MGII) http://www.sciencedirect.com/science/article/pii/S0003269712000966 Sensitive immunoassay detection of multiple environmental chemicals on protein microarrays using DNA/dye conjugate as a fluorescent label. Ziyan Fan, Young Soo Keum, Qing X. Li, Weilin L. Shelver, and Liang-Hong Guo. Journal of Environmental Monitoring, 01 May 2012; 14(5): 1345-1352. (MGII 600) (we have pdf file) Biosynthetic approach for functional protein microarrays. Brian Stamos, Leticia Loredo, Subhash Chand, Tuan V. Phan, Yanbo Zhang, Sridev Mohapatra, Krishnan Rajeshwar, and Roshan Perera. Analytical Biochemistry, 15 May 2012; 424(2): 114-123. (MGII) Chikungunya virus impacts the diversity of symbiotic bacteria in mosquito vector. Karima Zouache, Rory J. Michelland, Anna-Bella Failloux, Genevieve L. Grundmann, Patrick Mavingui. Molecular Ecology, May 2012; 21(9): 2297-2309. (MGII) http://www.lcg.unam.mx/frontiers/files/frontiers/Mavingui_21.pdf Seroreactivity to LGL leukemia-specific epitopes in aplastic anemia, myelodysplastic syndrome and paroxysmal nocturnal hemoglobinuria: results of a bone marrow failure consortium study. Susan Bell Nyland, Daniel J. Krissinger, Michael J. Clemente, Rosalyn B. Irby, Kendall Thomas Baab, Nancy Ruth Jarbadan, Lubomir Sokol, Eric Schaefer, Jason Liao, David Cuthbertson, Pearlie Epling-Burnette, Ronald Paquette, Alan F. List, Jaroslaw P. Maciejewski, Thomas P. Loughran Jr. Leukemia Research, May 2012; 36(5): 581-587. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3312981/pdf/nihms356309.pdf Enzymatic on-Chip Enhancement for High Resolution Genotyping DNA Microarrays. Holger Schulze, Timo Barl, Hollie Vase, Shiromi Baier, Peter Thomas, Gerard Giraud, Jason Crain, and Till T. Bachmann. Analytical Chemistry, 5 June 2012; 84(11): 5080-5084. (MGII) Gene expression signature for classification of kidney tumors. Inventors: Nitzan Rosenfeld, Yael Spector, Eddie Friedman, Zohar Dotan, and Shai Rosenwald. U.S. Patent Application: 2012/0157344 A1, Publication Date: 21 June 2012; (MGII) https://www.google.com/patents/US20120157344 Distinct regulation of c-myb gene expression by HoxA9, Meis1 and Pbx proteins in normal hematopoietic progenitors and transformed myeloid cells.

E. Dassé, G. Volpe, D. S. Walton, N. Wilson, W. Del Pozzo, L. P. O'Neill, R. K. Slany, J. Frampton, and S. Dumon. Blood Cancer Journal, 22 June 2012; 2(6): e76, 7pp. (MGII) http://www.nature.com/bcj/journal/v2/n6/pdf/bcj201220a.pdf MicroRNA biomarkers for human breast and lung cancer. Inventors: Ethan Dmitrovsky, Xi Liu, Sarah Freemantle, Lorenzo Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, and Mette Christensen. United States Patent: 8207325 B2, Publication Date: 26 June 2012; (MGII) https://www.google.com/patents/US8207325 Immunoassay-based proteome profiling of 24 pancreatic cancer cell lines. Mohamed Saiel Saeed Alhamdani , Mahmoud Youns, Malte Buchholz, Thomas M. Gress,Marie-Claire Beckers, Daniel Maréchal, Andrea Bauer, Christoph Schröder, Jörg D. Hoheisel Journal of Proteomics, 27 June 2012; 75(12): 3747-3759 (MG2) http://www.dkfz.de/funct_genome/PDF-Files/JProt-75-2012-3747.pdf Skeletal muscle alterations and exercise performance decrease in erythropoietin-deficient mice: a comparative study. Laurence Mille-Hamard, Veronique L. Billat, Elodie Henry, Blandine Bonnamy, Florence Joly, Philippe Benech, and Eric Barrey. BMC Medical Genomics, 29 June 2012; 5(1): 29, 20 pp. (MGII) http://www.biomedcentral.com/content/pdf/1755-8794-5-29.pdf Characterization of the viral O-glycopeptidome: a novel tool of relevance for vaccine design and serodiagnosis. Emiliano Cló, Stjepan K. Kračun, Aaron S. Nudelman, Knud J. Jensen, Jan-Åke Liljeqvist, Sigvard Olofsson, Tomas Bergström, and Ola Blixt. Journal of Virology, June 2012; 86(11): 6268-6278. (MGII) http://jvi.asm.org/content/86/11/6268.full Transcriptional profile of GTP-mediated differentiation of C2C12 skeletal muscle cells. Rosa Mancinelli, Tiziana Pietrangelo, Geoffrey Burnstock, Giorgio Fanò, and Stefania Fulle. Purinergic Signaling, June 2012; 8(2): 207-221. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3350577/ Transcriptome analysis of muscle in horses suffering from recurrent exertional rhabdomyolysis revealed energetic pathway alterations and disruption in the cytosolic calcium regulation. E. Barrey, L. Jayr, E. Mucher, S. Gospodnetic, F. Joly, P. Benech, O. Alibert et al. X. Gidrol, X. Mata , A. Vaiman and G. Guérin Animal Genetics, June 2012; 43(3): 271-281. (MGII) A whole genome DArT assay to assess germplasm collection diversity in common beans. Boris Brinez, Matthew W. Blair, Andrzej Kilian, Sérgio Augusto Morais Carbonell, Allison Fernando Chiorato, and Luciana Benchimol Rubiano. Molecular Breeding, June 2012; 30(1): 181-193. (MGII) Spotting device and method for high concentration spot deposition on microarrays and other microscale devices Inventors: Bruce Gale, David Chang-Yen, David Myszka

United States Patent: 8210119 B2; Publication Date: 3 July 2012 https://www.google.com/patents/US8210119 PRKX, TTBK2 and RSK4 expression causes sunitinib resistance in kidney carcinoma-and melanoma-cell lines. Claus Bender, and Axel Ullrich. International Journal of Cancer, 15 July 2012; 131(2): E45-E55. (MGII) http://onlinelibrary.wiley.com/doi/10.1002/ijc.26486/full Model-based global sensitivity analysis as applied to identification of anti-cancer drug targets and biomarkers of drug resistance in the ErbB2/3 network. Galina Lebedeva, Anatoly Sorokin, Dana Faratian, Peter Mullen, Alexey Goltsov, Simon P. Langdon, David J. Harrison, and Igor Goryanin. European Journal of Pharmaceutical Sciences, 16 July 2012; 46(4): 244-258. (MGII) http://www.sciencedirect.com/science/article/pii/S0928098711003861 Genome-wide transcriptional response of the archaeon Thermococcus gammatolerans to cadmium. Arnaud Lagorce, Aude Fourçans, Murielle Dutertre, Brice Bouyssiere, Yvan Zivanovic, and Fabrice Confalonieri. PLoS One, 27 July 2012; 7(7): e41935, 16pp. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0041935 Gene expression analysis in the green macroalga Acrosiphonia arcta (Dillw.) J. Ag.: Method optimization and influence of ultraviolet radiation. Stephan Kremb, Dieter Ernst, Werner Heller, and Christian Wiencke. Phycological Research, July 2012; 60(3): 151-160. (MGII) (we have pdf-file) Epidermolysis Bullosa - a group of skin diseases with different causes but commonalities in gene expression. Julia Knaup, Thomas Verwanger, Christina Gruber, Verena Ziegler, Johann W. Bauer, Barbara Krammer. Experimental Dermatology, July 2012; 21(7): 526-530. (MGII) Identification of biomarkers indicative of barotrauma and recovery in black rockfish Sebastes melanops. A. L. Pribyl, C. B. Schreck, S. J. Parker, and V. M. Weis. Journal of Fish Biology, July 2012; 81(1): 181-196. (MGII) http://ir.library.oregonstate.edu/xmlui/bitstream/handle/1957/31707/WeisVirginiaZoologyIdentificationBiomarkersIndicative.pdf?sequence=1 Analysis of the interaction of Clavibacter michiganensis subsp. michiganensis with its host plant tomato by genome-wide expression profiling. Monika Flügel, Anke Becker, Karl-Heinz Gartemann, and Rudolf Eichenlaub. Journal of Biotechnology, 31 July 2012; 160(1-2): 42-54. (MGII 610) Signal enhancement in antibody microarrays using quantum dots nanocrystals: application to potential Alzheimer’s disease biomarker screening. Eden Morales-Narváez, Helena Montón, Anna Fomicheva, and Arben Merkoçi. Analytical Chemistry, 7 August 2012; 84(15): 6821-6827. (MGII) (we have a .pdf file) High-throughput protein expression generator using a microfluidic platform.

Yair Glick, Dorit Avrahami, Efrat Michaely, and Doron Gerber. Journal of Visualized Experiments: JoVE, 23 August 2012; 66: 3849. (MG610) http://www.jove.com/video/3849/high-throughput-protein-expression-generator-using-microfluidic Itga2b regulation at the onset of definitive hematopoiesis and commitment to differentiation. Stephanie Dumon, David S. Walton, Giacomo Volpe, Nicola Wilson, Emilie Dassé, Walter Del Pozzo, Josette-Renee Landry, Bryan Turner, Laura P. O’Neill, Berthold Göttgens, Jon Frampton PLoS One, 28 August 2012; 7(8): e43300, 12 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0043300#pone-0043300-g007 A Siglec-like sialic-acid-binding motif revealed in an adenovirus capsid protein. Christoph Rademacher, Thierry Bru, Ryan McBride, Elizabeth Robison, Corwin M. Nycholat, Eric J. Kremer, and James C. Paulson. Glycobiology, August 2012; 22(8): 1086-1091. (MGII) http://glycob.oxfordjournals.org/content/22/8/1086.full Evaluation of a fosmid-clone-based microarray for comparative analysis of swine fecal metagenomes. Soo-Je Park, Dong-Hwan Kim, Man-Young Jung, So-Jeong Kim, Hongik Kim, Yang-Hoon Kim, Jong-Chan Chae, and Sung-Keun Rhee. Journal of Microbiology, August 2012; 50(4): 684-688. (MGII Compact) Development and initial evaluation of diversity array technology for soybean and mungbean. T. T. Hang Vu, R. J. Lawn, L. M. Bielig, S. J. Molnar, L. Xia, and A. Kilian. Euphytica, August 2012; 186(3): 741-754. (MGII) Proteomics-based dissection of human endoderm progenitors by differential cell capture on antibody array. Revital Sharivkin, Michael D. Walker, and Yoav Soen. Molecular & Cellular Proteomics, 1 September 2012; 11(9): 586-595. (MGII) http://www.mcponline.org/content/11/9/586.full.pdf+html The involvement of thaumatin-like proteins in plant food cross-reactivity: a multicenter study using a specific protein microarray. Arantxa Palacín, Luis A. Rivas, Cristina Gómez-Casado, Jacobo Aguirre, Leticia Tordesillas, Joan Bartra, Carlos Blanco Teresa Carrillo, Javier Cuesta-Herranz, José A. Cumplido Bonny, Enrique Flores, Mar G. García-Alvarez-Eire, Ignacio García-Nuñez, Francisco J. Fernández, Pedro Gamboa, Rosa Muñoz, Rosa Sánchez-Monge, Maria Torres, Susana Varela Losada, Mayte Villalba, Francisco Vega, Victor Parro, Miguel Blanca, Gabriel Salcedo, Araceli Díaz-Perales PLoS One, 7 September 2012; 7(9): e44088, 11 pp. (MGII TAS) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0044088 Mécanismes moléculaires de la réponse des plantes aux radiations ionisantes. Exploration du rôle des glucosinolates dans la réponse antioxydante. Morgane Gicquel PhD Theses, 14 September 2012; Université Rennes 1, France, 233 pp. (MGII) https://tel.archives-ouvertes.fr/tel-00797465/document Prokaryotic communities and operating metabolisms in the surface and the permafrost of Deception Island (Antarctica).

Yolanda Blanco, Olga Prieto-Ballesteros, Manuel J. Gómez, Mercedes Moreno-Paz, Miriam García-Villadangos, José A. Rodríguez-Manfredi, Patricia Cruz-Gil, Mónica Sánchez-Román, Luis A. Rivas, and Victor Parro. Environmental Microbiology, September 2012; 14(9): 2495-2510. (MGII) http://www.researchgate.net/profile/Olga_Prieto-Ballesteros/publication/224916749_Prokaryotic_communities_and_operating_metabolisms_in_the_surface_and_the_permafrost_of_Deception_Island_(Antarctica)/links/0046353857f4688af6000000.pdf Evaluation of riproximin binding properties reveals a novel mechanism for cellular targeting. Helene Bayer, Katharina Essig, Sven Stanzel, Martin Frank, Jeffrey C. Gildersleeve, Martin R. Berger, and Cristina Voss. Journal of Biological Chemistry, 19 October 2012; 287(43): 35873-35886. (MGII) http://www.jbc.org/content/287/43/35873.full.pdf+html Diagnostic method. Inventors: Ainara Cadaval, Diego Tejedor Hernández, Antonio Martínez Martínez, Laureano Simón Buela United States Patent: 8296073 B2; Publication Date: 23 October 23 2012; (MGII) https://www.google.com/patents/US8296073 Revisiting CB1 receptor as drug target in human melanoma. István Kenessey, Balázs Bánki, Ágnes Márk, Norbert Varga, József Tóvári, Andrea Ladányi, Erzsébet Rásó, and József Tímár. Pathology & Oncology Research, October 2012; 18(4): 857-866. (we have pdf-file) Disease diagnosis according to saccharide binding. Inventors: Ofer Markman, Assaf Assaph Peretz Oron, and Chana Rothmann-Schertz. US Patent Application: US 20120277116A1; Publication Date: 1 November 2012; (MGII/TAS/Pro) https://www.google.com/patents/US20120277116 Simultaneous and sensitive detection of six serotypes of botulinum neurotoxin using enzyme-linked immunosorbent assay-based protein antibody microarrays. Yanfeng Zhang, Jianlong Lou, Kathy L. Jenko, James D. Marks, and Susan M. Varnum. Analytical Biochemistry, 15 November 2012; 430(2): 185-192. (MGII) http://europepmc.org/articles/pmc3589981 Versatile high resolution oligosaccharide microarrays for plant glycobiology and cell wall research. Henriette L. Pedersen, Jonatan U. Fangel, Barry McCleary, Christian Ruzanski, Maja G. Rydahl, Marie-Christine Ralet, Vladimir Farkas, Laura von Schantz, Susan E. Marcus, Mathias C. F. Andersen, Rob Field, Mats Ohlin, J. Paul Knox, Mads H. Clausen and William G. T. Willats Journal of Biological Chemistry, 16 November 2012; 287(47): 39429-39438. (MGII) http://www.jbc.org/content/287/47/39429.full Oligonucleotides for cancer diagnosis. Praveen Sharma, and Anders Lönneborg. U.S. Patent Application: US 20120295800 A1, Publication Date: 22 November 2012; (MGII) https://www.google.com/patents/US20120295800

Identification of new autoantigens by protein array indicates a role for IL4 neutralization in autoimmune hepatitis. Chiara Zingaretti, Milena Arigò, Angela Cardaci, Monica Moro, Mariacristina Crosti, Antonella Sinisi, Elisa Sugliano, Cristina Cheroni, Francesco Marabita, Renzo Nogarotto, Raoul Jean Pierre Bonnal, Paolo Marcatili, Maurizio Marconi, Annalinda Zignego, Paolo Muratori, Pietro Invernizzi, Piero Colombatto, Maurizia Brunetto, Ferruccio Bonino, Raffaele De Francesco, Jens Geginat, Massimiliano Pagani, Luigi Muratori, Sergio Abrignani, and Mauro Bombaci Molecular & Cellular Proteomics, 1 December 2012; 11(12): 1885-1897. (MGII) http://www.mcponline.org/content/11/12/1885.full Self-assembled protein arrays from an Ornithodoros moubata salivary gland expression library. Raul Manzano-Román, Veronica Díaz-Martín, Maria González-González, Sergio Matarraz, Angel Francisco Álvarez-Prado, Joshua LaBaer, Alberto Orfao, Ricardo Pérez-Sánchez, and Manuel Fuentes. Journal of Proteome Research, 7 December 2012; 11(12): 5972-5982. (MGII) Graph based study of allergen cross-reactivity of plant lipid transfer proteins (LTPs) using microarray in a multicenter study. Arantxa Palacín, Cristina Gómez-Casado, Luis A. Rivas, Jacobo Aguirre, Leticia Tordesillas, Joan Bartra, Carlos Blanco Teresa Carrillo, Javier Cuesta-Herranz, Consolación de Frutos, Genoveva García Álvarez-Eire, Francisco J. Fernández, Pedro Gamboa, Rosa Muñoz, Rosa Sánchez-Monge, Sofía Sirvent, María J. Torres, Susana Varela-Losada, Rosalía Rodríguez, Victor Parro, Miguel Blanca, Gabriel Salcedo, Araceli Díaz-Perales PLoS One, 14 December 2012; 7(12): e50799, 10 pp. (MGII TAS) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0050799#pone-0050799-g004 Direct detection and genotyping of Klebsiella pneumoniae carbapenemases from urine by use of a new DNA microarray test. Harald Peter, Kathrine Berggrav, Peter Thomas, Yvonne Pfeifer, Wolfgang Witte, Kate Templeton, and Till T. Bachmann. Journal of Clinical Microbiology, December 2012; 50(12): 3990-3998. (MGII) http://jcm.asm.org/content/50/12/3990.full Transcriptomic profiling of the reproductive mode switch in the pea aphid in response to natural autumnal photoperiod. Gaël Le Trionnaire, Stéphanie Jaubert-Possamai, Joël Bonhomme, Jean-Pierre Gauthier, Grégory Guernec, Aurélie Le Cam, Fabrice Legeai, Jérôme Monfort, and Denis Tagu. Journal of Insect Physiology, December 2012; 58(12): 1517-1524. (MGII) Cancer biomarkers detection using 3D microstructured protein chip: Implementation of customized multiplex immunoassay. Zhugen Yang, Yann Chevolot, Yasemin Ataman-Önal, Geneviève Choquet-Kastylevsky, Eliane Souteyrand, and Emmanuelle Laurenceau. Sensors and Actuators, B: Chemical, December 2012; 175: 22-28. (MGII) Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS. Iwona Stelniec-Klotz, Stefan Legewie, Oleg Tchernitsa, Franziska Witzel, Bertram Klinger, Christine Sers, Hanspeter Herzel, Nils Blüthgen, and Reinhold Schäfer. Molecular Systems Biology, December 2012; 8: 601, 16pp. (MG Compact) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3421447/pdf/msb201232.pdf

General procedure for the synthesis of neoglycoproteins and immobilization on epoxide-modified glass slides. Yalong Zhang, and Jeffrey C. Gildersleeve. Methods in Molecular Biology, 2012 (28/09/11); 808 (Carbohydrate microarrays): 155-165. (MGII) Microarray Method for the Rapid Detection of Glycosaminoglycan–Protein Interactions. Claude J. Rogers, and Linda C. Hsieh-Wilson. Methods in Molecular Biology, 2012 (28/09/11); 808 (Carbohydrate microarrays): 321-336. (MGII) FRET-based real-time DNA microarrays. Arjang Hassibi, Haris Vikalo, José Luis Riechmann, and Babak Hassibi. Methods in Molecular Biology, 2012 (4/11/11); 815 (Functional genomics): 147-159. (MGII) Comprehensive DNA methylation profiling of human repetitive DNA elements using an MeDIP-on-RepArray assay. Eric Gilson, and Béatrice Horard. Methods in Molecular Biology, 2012; 859 (Mobile genetic elements): 267-291. Diversity arrays technology: a generic genome profiling technology on open platforms Andrzej Kilian, Peter Wenzl, Eric Huttner, Jason Carling, Ling Xia, Hélène Blois, Vanessa Caig, Katarzyna Heller-Uszynska, Damian Jaccoud, Colleen Hopper, Malgorzata Aschenbrenner-Kilian, Margaret Evers, Kaiman Peng, Cyril Cayla, Puthick Hok, Grzegorz Uszynski Methods in Molecular Biology, 2012; 888 (Data production and analysis in population genomics): 67-89. Expression profiling in brain disorders. Peter J. Gebicke-Haerter Neuromethods, 2012; 64 (Expression Profiling in Neuroscience): 35-61. Carbohydrate microarrays. Inga Bach Web-page, 2012; Depart. Plant & Environmental Sciences, University of Kopenhagen, Danmark (MGII) Functional responses of methanogenic archaea to syntrophic growth. Christopher B. Walker, Alyssa M. Redding-Johanson, Edward E. Baidoo, Lara Rajeev, Zhili He, Erik L. Hendrickson, Marcin P. Joachimiak, Sergey Stolyar, Adam P Arkin, John A Leigh, Jizhong Zhou, Jay D Keasling, Aindrila Mukhopadhyay and David A Stahl The ISME Journal, November 2012; 6(11): 2045-2055. (MGII) http://www.nature.com/ismej/journal/v6/n11/full/ismej201260a.html Contribution of biofilm genes to adherence of Escherichia coli O157: H7 to epithelial cells. Mishel Marie Stephenson Ojea MS Theses, 2012; Iowa State University, Ames, IA, 86 pp. http://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=3480&context=etd 2011.

A transcriptional map of the impact of endurance exercise training on skeletal muscle phenotype. Pernille Keller, Niels BJ Vollaard, Thomas Gustafsson, Iain J. Gallagher, Carl Johan Sundberg, Tuomo Rankinen, Steven L. Britton, Claude Bouchard, Lauren G. Koch, and James A. Timmons. Journal of Applied Physiology, 1 January 2011; 110(1): 46-59. (MGII) http://jap.physiology.org/content/110/1/46 Solution-based methods for RNA expression profiling. Inventors: Todd R. Golub, Justin Lamb, David Peck, Jun Lu, Eric Alexander Miska US Patent Application: US 2011/0015080 A1, Publication Date: 20 January 2011; (MGII TAS) https://www.google.com/patents/US20110015080 Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis. Paola Venier, Laura Varotto, Umberto Rosani, Caterina Millino, Barbara Celegato, Filippo Bernante, Gerolamo Lanfranchi, Beatriz Novoa, Philippe Roch, Antonio Figueras, and Alberto Pallavicini BMC Genomics, 26 January 2011; 12: 69, 19pp. (MGII) http://www.biomedcentral.com/1471-2164/12/69 Methods and compositions for treating neuronal damage or degeneration. Inventors: Linda C. Hsieh-Wilson, Joshua Micah Brown, Binquan Zhuang US Patent Application: US 2011/0020359 A1; Publication Date: 27 January 2011 Method for Analyzing a Glycomolecule. Inventors: Yehudit Amor, Ofer Markman, Mirit Kolog Gulko, Albena Samokovlisky, Fredi Kleinman, Tal Alergand, Rakefet Rosenfeld, Ruth Maya, Sabina Rebe, Idil Kelson Kasuto, Haim Bangio US Patent Application: US 2011/0021376 A1, Publication Date: 27 January 2011 A transcriptional map of the impact of endurance exercise training on skeletal muscle phenotype. Pernille Keller, Niels B. J. Vollaard, Thomas Gustafsson, Iain J. Gallagher, Carl Johan Sundberg, Tuomo Rankinen, Steven L. Britton, Claude Bouchard, Lauren G. Koch, and James A. Timmons Journal of Applied Physiology, January 2011; 110(1): 46-59 http://jap.physiology.org/content/110/1/46 New Labelling Technology for Molecular Probes Applied to the Ligation Detection Reaction–Universal Array System. Andrea Lauri, Stefania Chessa, Marta Raschetti, Bianca Castiglioni, Paola Mariani and Alexandre R. Caetano Molecular Biotechnology, January 2011; 47(1): 1-8 (MGII Compact) Subtractive single label comparative hybridization. Inventors: Renius X. Owen, Charles M. Strom United States Patent: 7892743 B1; Publication Date: 22 February 2011 Microgenomic Analysis in Skeletal Muscle: Expression Signatures of Individual Fast and Slow Myofibers Francesco Chemello, Camilla Bean, Pasqua Cancellara, Paolo Laveder, Carlo Reggiani, Gerolamo Lanfranchi PLoS ONE, 22 February 2011; 6(2): e16807, 14pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016807#pone-0016807-g006

Methods For Encoding And Sorting In Vitro Translated Proteins. Inventor: Robert G. Kuimelis United States Patent: 7892785 B2; Publication Date: 22 February 2011 SOLID3: a multiplex antibody microarray-based optical sensor instrument for in situ l ife detection in planetary exploration. Víctor Parro, Graciela de Diego-Castilla, José A. Rodríguez-Manfredi, Luis A. Rivas, Yolanda Blanco-López, Eduardo Sebastián, Julio Romeral, Carlos Compostizo, Pedro L. Herrero, Adolfo García-Marín, Mercedes Moreno-Paz, Miriam García-Villadangos, Patricia Cruz-Gil, Verónica Peinado, Javier Martín-Soler, Juan Pérez-Mercader, and Javier Gómez-Elvira Astrobiology, 23 February 2011; 11(1): 15-28. (MGII TAS) Classification of Modern and Old Río Tinto Sedimentary Deposits Through the Biomolecular Record Using a Life Marker Biochip: Implications for Detecting Life on Mars. Victor Parro, David Fernández-Remolar, José A. Rodríguez-Manfredi, Patricia Cruz-Gil, Luis A. Rivas, Marta Ruiz-Bermejo, Mercedes Moreno-Paz, Miriam García-Villadangos, David Gómez-Ortiz, Yolanda Blanco-López, César Menor-Salván, Olga Prieto-Ballesteros, Javier Gómez-Elvira. Astrobiology, 23 February 2011; 11(1): 29-44. (MGII TAS) Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands. Doris Steger, Cecilia Wentrup, Christina Braunegger, Pinsurang Deevong, Manuel Hofer, Andreas Richter, Christian Baranyi, Michael Pester, Michael Wagner, and Alexander Loy Applied and Environmental Microbiology, February 2011; 77(4): 1231-1242 http://aem.asm.org/content/77/4/1231.full A tool based on Ligation Detection Reaction-Universal Array (LDR-UA) for the characterization of VTEC by identification of virulence-associated and serogroup-specific genes Andrea Lauri, Bianca Castiglioni, Stefano Morabito, Rosangela Tozzoli, Clarissa Consolandi and Paola Mariani Molecular and Cellular Probes, February 2011; 25(1): 35-43 Chicken anemia virus: an understanding of the in-vitro host response over time. Tamsyn M. Crowley, Volker R. Haring, and Robert Moore. Viral Immunology, February 2011; 24(1): 3-9. (MGII) Quantitative studies of carbohydrate-protein interaction using functionalized bacterial spores in solution and on chips. Tae Jung Park, Jong Pil Park, Seok Jae Lee and Sang Yup Lee Biotechnology and Bioprocess Engineering, February 2011; 16(1): 190-195 Phylogenetic Microarrays for Cultivation-Independent Identification and Metabolic Characterization of Microorganisms in Complex Samples. Alexander Loy, Michael Pester and Doris Steger Methods in Molecular Biology, February 2011; 688 (PCR Mutation Detection Protocols): 187-206 Microarray-based genotyping of Salmonella: Inter-laboratory evaluation of reproducibility and standardization potential Hugo Grønlund, Leise Riber, Håkan Vigre, Charlotta Löfström, Liselotte Folling, Stephan Huehn, Burkhard Malorny, Peter Rådström, Knut Rudi and Jeffrey Hoorfar

International Journal of Food Microbiology, 1 March 2011; 145(1S): S79-S85 (MGII 610) Tyramide signal amplification for antibody-overlay lectin microarray: a strategy to improve the sensitivity of targeted glycan profiling. Danni L. Meany, Laszlo Hackler Jr, Hui Zhang, and Daniel W. Chan. Journal of Proteome Research, 4 March 2011; 10(3): 1425-1431. (MGII 600) http://europepmc.org/articles/pmc3831023 The mediator head module and regulation of RNA polymerase II transcription initiation. Martin Josef Seizl PhD Theses, 4 March 2011; Ludwig-Maximilians-Universität München, 112 pp. (MGII) http://edoc.ub.uni-muenchen.de/13567/1/Seizl_Martin.pdf Autoantibodies to aberrantly glycosylated MUC1 in early stage breast cancer are associated with a better prognosis. Ola Blixt, Deanna Bueti, Brian Burford, Diane Allen, Sylvain Julien, Michael Hollingsworth, Alex Gammerman, Ian Fentiman, Joyce Taylor-Papadimitriou and Joy M Burchell Breast Cancer Research, 8 March 2011; 13(2): R25, 16 pp (MGII) http://www.biomedcentral.com/content/pdf/bcr2841.pdf Tandem Quadruplication of HMA4 in the Zinc (Zn) and Cadmium (Cd) Hyperaccumulator Noccaea caerulescens. Seosamh Ó Lochlainn, Helen C. Bowen, Rupert G. Fray, John P. Hammond, Graham J. King, Philip J. White, Neil S. Graham, Martin R. Broadley PLoS ONE, 10 March 2011; 6(3): e17814, 9pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017814 Two distinct auto-regulatory loops operate at the PU.1 locus in B cells and myeloid cells. Mathias Leddin, Chiara Perrod, Maarten Hoogenkamp, Saeed Ghani, Salam Assi, Sven Heinz, Nicola K. Wilson, George Follows, Jörg Schönheit, Lena Vockentanz, Ali M. Mosammam, Wei Chen, Daniel G. Tenen, David R. Westhead, Berthold Göttgens, Constanze Bonifer, and Frank Rosenbauer Blood, 10 March 2011; 117(10): 2827-2838 The Dynamics of Plant Cell-Wall Polysaccharide Decomposition in Leaf-Cutting Ant Fungus Gardens. Isabel E. Moller, Henrik H. De Fine Licht, Jesper Harholt, William G. T. Willats, Jacobus J. Boomsma PLoS ONE, 10 March 2011; 6(3): e17506, 9pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017506 Two distinct auto-regulatory loops operate at the PU. 1 locus in B cells and myeloid cells. Mathias Leddin, Chiara Perrod, Maarten Hoogenkamp, Saeed Ghani, Salam Assi, Sven Heinz, Nicola K. Wilson, George Follows, Jörg Schönheit, Lena Vockentanz, Ali M. Mosammam, Wei Chen, Daniel G. Tenen, David R. Westhead, Berthold Göttgens, Constanze Bonifer, and Frank Rosenbauer Blood, 10 March 2011; 117(10): 2827-2838. (MGII) http://www.bloodjournal.org/content/117/10/2827.full-text.pdf+html In vitro diagnostic kit for identification of human papillomavirus in clinical samples. Inventors: Villahermosa Jaen, Maria Luisa; Escobar, Irene Gascon US Patent Application: 2011/0070576 A1; Publication Date: 24 March 2011

Compositions and methods for diagnosis, prognosis and treatment of mesothelioma. Inventors: Harvey Pass, Hila Benjamin, Moshe Hoshen, Sergey Ivanov US Patent Application: 2011/0071215 A1; Publication Date: 24 March 2011 Method and composition for disease diagnosis according to saccharide binding. Inventors: Ofer Markman, Assaf (Assaph) Peretz Oron, Chana Rothmann-Schertz US Patent Application: US 2011/0071041 A1; Publication Date: 24 March 2011 Promoter detection and analysis. Inventors: Yongsheng MA, Xavier Danthinne US Patent Application: US 2011/0071047 A1; Publication Date: 24 March 2011 Identification of molecules derived from human fibroblast feeder cells that support the proliferation of human embryonic stem cells. Sergey V. Anisimov, Nicolaj S. Christophersen, Ana S. Correia, Vanessa J. Hall, Ingrid Sandelin, Jia-Yi Li and Patrik Brundin Cellular & Molecular Biology Letters, March 2011; 16(1): 79-88 (MG 600R) http://lup.lub.lu.se/luur/download?func=downloadFile&recordOId=1756276&fileOId=1765700 Dok4 is involved in Schwann cell myelination and axonal interaction in vitro. Corinne Blugeon, Stéphane Le Crom, Laurence Richard, Jean-Michel Vallat, Patrick Charnay, Laurence Decker Glia, March 2011; 59(3): 351–362 Low-density microarrays for the detection of Borrelia burgdorferi s.s. (the Lyme disease spirochete) in nymphal Ixodes scapularis. Julie A. Houck, Andrias Hojgaard, Joseph Piesman and Robert D. Kuchta Ticks and Tick-borne Diseases, March 2011; 2(1): 27-36 Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum. Christina Grimmler, Holger Janssen, Desireé Krauβe, Ralf-Jörg Fischer, Hubert Bahl, Peter Dürre, Wolfgang Liebl, and Armin Ehrenreich. Journal of Molecular Microbiology and Biotechnology, March 2011; 20(1): 1-15. (MGII) http://mediatum.ub.tum.de/doc/1218934/1218934.pdf EST resources and establishment and validation of a 16 k cDNA microarray from Atlantic cod (Gadus morhua) Rolf B. Edvardsen, Ketil Malde, Christian Mittelholzer, Geir Lasse Taranger and Frank Nilsen Comparative Biochemistry Physiology Part D: Genomics Proteomics, March 2011; 6(1): 23-30 (MGII) http://www.researchgate.net/profile/Frank_Nilsen/publication/45388689_EST_resources_and_establishment_and_validation_of_a_16k_cDNA_microarray_from_Atlantic_cod_(Gadus_morhua)/links/00b7d527b6b5286fbd000000.pdf Methods for distinguishing between specific types of lung cancers. Inventors: Nitzan Rosenfeld, Shia Rosenwald, Iris Barshack, Gila Lithwick Yanai US Patent Application: 2011/0077168 A1; Publication Date: 31 March 2011 Genetic Diversity in Wheat: Analysis using Diversity Arrays Technology (DArT) in bread and durum wheats

Brent Robert Thomson, PhD Theses, 31 March 2011; The University of Sydney, 311 pp. (MGII) http://ses.library.usyd.edu.au/handle/2123/8087 Dok4 is involved in Schwann cell myelination and axonal interaction in vitro. Corinne Blugeon, Stéphane Le Crom, Laurence Richard, Jean‐Michel Vallat, Patrick Charnay, and Laurence Decker. Glia, March 2011; 59(3): 351-362. Campylobacter in farm animals. Amy John PhD Theses, March 2011; University of Nottingham, 339 pp. (MGII GOD) http://core.ac.uk/download/pdf/18409828.pdf Comparison and critical analysis of robotized technology for monoclonal antibody high-throughput production. Pieranna Chiarella, Melanie Leuener, Christian Fasci, Ario de Marco, Maria Paola Santini, Vito M. Fazio, and Alan M. Sawyer. Biotechnology Progress, March/April 2011; 27(2): 571-576. (MGII 600) An expression system for screening of proteins for glycan and protein interactions Diana M.E. Otto, Maria A. Campanero-Rhodes, Rositsa Karamanska, Andrew K. Powell, Nicolai Bovin, Jeremy E. Turnbull, Robert A. Field, Jonathan Blackburn, Ten Feizi and Paul R. Crocker Analytical Biochemistry, 15 April 2011; 411(2): 261-270 (MGII TAS) http://www.sciencedirect.com/science/article/pii/S0003269710008237 Expression variability of co-regulated genes differentiates Saccharomyces cerevisiae strains. Laura Carreto, Maria F. Eiriz, Inês Domingues, Dorit Schuller, Gabriela R. Moura, Manuel AS Santos. BMC Genomics, 20 April 2011; 12(1): 201, 17 pp. (MGII Compact) http://www.biomedcentral.com/content/pdf/1471-2164-12-201.pdf Mycobacterial genes down-regulated during latency. Inventors: Brian William James, Tobias Hampshire, Philip Marsh US Patent Application: 2011/0091881 A1; Publication Date: 21 April 2011 Characterization of FarR as a highly specialized, growth phase-dependent transcriptional regulator in Neisseria meningitides. Stephanie Schielke, Carolin Spatz, Roland Felix Schwarz, Biju Joseph, Christoph Schoen, Sabine Marita Schulz, Kerstin Hubert, Matthias Frosch, Alexandra Schubert-Unkmeir and Oliver Kurzai International Journal of Medical Microbiology, April 2011; 301(4): 325-333 (MGII) Detection of follicular fluid and serum antibodies by protein microarrays in women undergoing in vitro fertilization treatment. Andrea Ardizzonia, Lidia Mancaa, Francesco Capodannob, Maria Cristina Baschieria, Ilaria Rondinib, Samuele Peppolonia, Elena Righia, Giovanni Battista La Salab, Elisabetta Blasi J. Reproductive Immunology, April 2011; 89(1): 62-69. (MGII) Natural mixtures of POPs affected body weight gain and induced transcription of genes involved in weight regulation and insulin signaling

Jan L. Lyche, Rasoul Nourizadeh-Lillabadi, Camilla Karlsson, Benedicte Stavik, Vidar Berg, Janneche Utne Skåre, Peter Alestrøm and Erik Ropstad Aquatic Toxicology, April 2011; 102(3-4): 197-204 (MGII) (we have pdf-file) Unconventional low-cost fabrication and patterning techniques for point of care diagnostics. Himanshu Sharma, Diep Nguyen, Aaron Chen, Valerie Lew, and Michelle Khine. Annals of Biomedical Engineering, April 2011; 39(4): 1313-1327. http://link.springer.com/article/10.1007/s10439-010-0213-1/fulltext.html Peptide-tags for enhanced DNA microarray performance. Holger Schulze, Alan J. Ross, Stuart W. J Ember, Julie Luby, Mizanur Khondoker, Gerard Giraud, Ilenia Ciani, Chaker Tlili, Davide Papale, Jonathan G. Terry, Andrew R. Mount, Anthony J Walton, Jason Crain, Peter Ghazal, Till T. Bachmann and Colin J. Campbell Faraday Discussions, Spring 2011; 149: 201-210 (MGII) http://www.research.ed.ac.uk/portal/files/11573954/Peptide_tags_for_enhanced_DNA_microarray_performance.pdf Compositions and methods for prognosis of ovarian cancer. Inventors: Moshe Hosen, Gila Lithwick Yanai, Ram Eitan, US Patent Application: 2011/0105596 A1; Publication Date: 5 May 2011 ChIP-on-chip analysis of in vivo mutant p53 binding to selected gene promoters. Stefania Dell'Orso, Giulia Fontemaggi, Perry Stambolsky, Frauke Goeman, Christine Voellenkle, Massimo Levrero, Sabrina Strano, Varda Rotter, Moshe Oren, and Giovanni Blandino. Omics: a Journal of Integrative Biology, 10 May 2011; 15(5): 305-312. (MGII) Serum Array; En metode for høykapasitetsanalyser av serumprøver. Marte Sneeggen MS Theses, 16 May 2011; Norges Teknisk-Naturvitenskapelige Universitet, Trondheim, 60pp. (MG TAS) http://brage.bibsys.no/xmlui/bitstream/handle/11250/245704/427892_FULLTEXT01.pdf?sequence=2&isAllowed=y Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). W. Walter Lorenz, Rob Alba, Yuan-Sheng Yu, John M. Bordeaux, Marta Simoes and Jeffrey F.D. Dean BMC Genomics, 24 May 2011; 12: 264, 17 pp. (MGII) http://www.biomedcentral.com/1471-2164/12/264 Construction and Validation of a Prototype Microarray for Efficient and High-Throughput Genotyping of Angiosperms Using the PCR-Select™ cDNA Subtraction Kit Jayasinghe, R., Kong, S., Coram, T.E., Kaganovitch, J., Xue, C.C.L., Li, C.G., and Pang, E.C.K. Clontech Laboratories Publication, May 2011; p.1-4 http://www.clontech.com/images/brochures/Construct-Validate-Prototype-Microarray-using-PCRSelect-cDNA-Subtraction-Kit-US.pdf Use of diversity arrays technology markers for integration into a cotton reference map and anchoring to a recombinant inbred line map. Umesh K. Reddy, Jun-kang Rong, Padma Nimmakayala, Gopinath Vajja, Mohammad A. Rahman, John Yu, Khairy M. Soliman, Katarzyna Heller-Uszynska, Andrzej Kilian, and Andrew H. Paterson. Genome, May 2011; 54(5): 349-359. (MGII)

Sol–gel encapsulated glucose oxidase arrays based on a pH sensitive fluorescent dye. Nimet Yildirim, Dilek Odaci, Gulsiye Ozturk, Serap Alp, Yavuz Ergun, Kay Dornbusch, Karl-Heinz Feller and Suna Timur Dyes and Pigments, May 2011; 89(2): 144-148 Profound differences in the transcriptome of Campylobacter jejuni grown in two different, widely used, microaerobic atmospheres. Amy John, Phillippa Leigh Connerton, Nicola Cummings, and Ian Frank Connerton. Research in Microbiology, May 2011; 162(4): 410-418. (MGII) Use of diversity arrays technology markers for integration into a cotton reference map and anchoring to a recombinant inbred line map. Umesh K. Reddy, Jun-kang Rong, Padma Nimmakayala, Gopinath Vajja, Mohammad A Rahman, John Yu, Khairy M. Soliman, Katarzyna Heller-Uszynska, Andrzej Kilian, Andrew H. Paterson Genome, May 2011; 54(5): 349-359. Transcriptional profiling of the marine oil-degrading bacterium Alcanivorax borkumensis during growth on n-alkanes. Julia S. Sabirova, Anke Becker, Heinrich Lünsdorf, Jean-Marc Nicaud, Kenneth N. Timmis, and Peter N. Golyshin. FEMS Microbiology Letters, 01 June 2011; 319(2): 160-168. (MGII 610) http://femsle.oxfordjournals.org/content/319/2/160 Large scale RNAi screen reveals that the Inhibitor of DNA binding 2 (ID2) protein is repressed by p53 family member p63 and functions in human keratinocyte differentiation. Ning Wu, David Castel, Marie-Anne Debily, Maria Alessandra Vigano, Olivier Alibert, Roberto Mantovani, Kristina Iljin, Paul-Henri Romeo and Xavier Gidrol Journal of Biological Chemistry, 10 June 2011; 286(23): 20870-20879. http://www.jbc.org/content/286/23/20870.full The Streptococcus pneumoniae pilus-1 displays a biphasic expression pattern. Gabriella De Angelis, Monica Moschioni, Alessandro Muzzi, Alfredo Pezzicoli, Stefano Censini, Isabel Delany, Morena Lo Sapio, Antonia Sinisi, Claudio Donati, Vega Masignani, Miche`le A. Barocchi PLoS One, 22 June 2011; 6(6): e21269, 13 pp. (MGII) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0021269 Réponse à l'infection: apport du transcriptome. Julien Textoris PhD Theses, 30 June 2011; Université de la Méditerranée-Aix-Marseille, 192 pp. (MGII) http://hal.ird.fr/file/index/docid/723077/filename/these_depot.pdf Graph-based deconvolution analysis of multiplex sandwich microarray immunoassays: applications for environmental monitoring. Luis A. Rivas, Jacobo Aguirre, Yolanda Blanco, Elena González-Toril, and Víctor Parro. Environmental Microbiology, June 2011; 13(6): 1421-1432. (MGII TAS) Metastatic potential of melanoma cells is not affected by electrochemotherapy. Vesna Todorovic, Gregor Sersa, Vid Mlakar, Damjan Glavac, Karel Flisar, and Maja Cemazar. Melanoma Research, June 2011; 21(3): 196-205. (MG1000)

http://lbk.fe.uni-lj.si/pdfs/melr2011.pdf Genetic mapping in Lilium: mapping of major genes and quantitative trait loci for several ornamental traits and disease resistances Arwa Shahin, Paul Arens, Adriaan W. Van Heusden, Gerard Van Der Linden, Martijn Van Kaauwen, Nadeem Khan, Henk J. Schouten W. Eric Van De Weg, Richard G. F. Visser and Jaap M. Van Tuyl Plant Breeding, June 2011; 130(3): 372-382. (MGII) (we have pdf-file) The acquisition of resistance to TNFα in breast cancer cells is associated with constitutive activation of autophagy as revealed by a transcriptome analysis using a custom microarray. Etienne Moussay, Tony Kaoma, Joanna Baginska, Arnaud Muller, Kris Van Moer, Nathalie Nicot, Petr V. Nazarov, Laurent Vallar, Salem Chouaib, Guy Berchem & Bassam Janji Autophagy, 01 July 2011; 7(7): 760-770. (MGII) http://www.tandfonline.com/doi/pdf/10.4161/auto.7.7.15454 RamA and RamB are global transcriptional regulators in Corynebacterium glutamicum and control genes for enzymes of the central metabolism. Marc Auchter, Annette Cramer, Andrea Hüser, Christian Rückert, Denise Emer, Peggy Schwarz, Annette Arndt, Christian Lange, Jörn Kalinowski, Volker F. Wendisch and Bernhard J. Eikmanns Journal of Biotechnology, 10 July 2011; 154(2-3): 126-139 (MGII 610) http://pub.uni-bielefeld.de/publication/1896635 杨晓琳, 彭丽萍, 田明尧, 孙珊珊, 龙川, and 金宁一. N 亚型流感病毒分型基因芯片检测方法的建立. Establishment of the Detected Method of Grouping the Gene Chip of N Subtypical Influenza Virus Xiao-lin Yang, Li-ping Peng, Ming-yao Tian, Shan-shan Sun, Chuan Long, Ning-yi Jin 吉林农业大学学报 (Journal of Jilin Agricultural University), 14 July 2011; 33(5): 562-566. (MG TAS) http://xuebao.jlau.edu.cn/fileup/PDF/2011562.pdf The protein "mycoarray": a novel serological assay for the laboratory diagnosis of primitive endemic mycoses. Andrea Ardizzoni, Maria C. Baschieri, Lidia Manca, Carlotta F. Orsi, Claudia Venturelli, Marisa Meacci, Samuele Peppoloni, Claudio Farina, and Elisabetta Blasi. New Microbiologica, July 2011; 34(3): 307-316. (MGII) https://air.unimi.it/retrieve/handle/2434/228595/298390/307.pdf Comprehensive analysis of Salmonella sequence polymorphisms and development of a LDR-UA assay for the detection and characterization of selected serotypes. Andrea Lauri, Bianca Castiglioni, and Paola Mariani. Applied Microbiology and Biotechnology, July 2011; 91(1): 189-210. Elevated IgG autoantibody production in oligoarticular juvenile idiopathic arthritis may predict a refractory course. Matthew L. Stoll, Quan-Zhen Li, Jinchun Zhou, Marilynn Punaro, and Nancy J. Olsen. Clinical and Experimental Rheumatology, July-August 2011; 29(4): 736-742. (MGII) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171611/ Serum IgE reactivity profiling in an asthma affected cohort.

Tania Dottorini, Gabriella Sole, Luisa Nunziangeli, Francesca Baldracchini, Nicola Senin, Giorgio Mazzoleni, Carla Proietti, Lenuta Balaci, and Andrea Crisanti. PLoS One, 4 August 2011; 6(8): e22319, 11pp. (MG Compact) http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0022319 Systematic spatial bias in DNA microarray hybridization is caused by probe spot position-dependent variability in lateral diffusion. Doris Steger, David Berry, Susanne Haider, Matthias Horn, Michael Wagner, Roman Stocker, and Alexander Loy. PLoS One, 17 August 2011; 6(8): e23727. 11pp http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023727#pone-0023727-g008 Mycobacterial antigens expressed during latency. Inventors: Brian W. James, Philip Marsh, and Tobias Hampshire. United States Patent: 8003776 B2, Publication Date: 23 August 2011. https://www.google.com/patents/US8003776 An Evaluation of the Role of Gene Expression in the Prediction and Diagnosis of Ventilator-associated Pneumonia Julien Textoris, Béatrice Loriod, Laurent Benayoun, Pierre-Antoine Gourraud, Denis Puthier, Jacques Albanèse, Jean Mantz, Claude Martin, Catherine Nguyen, Marc Leone. Anesthesiology, August 2011; 115(2): 344-352 (MGII) http://anesthesiology.pubs.asahq.org/article.aspx?articleid=1933606 Biomarkers for Human Papilloma Virus-Associated Cancers. Inventors: Dohun Pyeon, Paul F. Lambert, Michael A. Newton, and Paul G. Ahlquist. United States Patent: 8012678 B2, Publication Date: 6 September 2011; (MGII) https://www.google.com/patents/US8012678 Method for the detection and/or identification of a microorganism. Inventors: Viraj Perera, Benjamin Fry EU Patent Application: EP 2363497 A2, Publication Date: 7 September 2011; (MGII Compact) https://www.google.com/patents/EP2363497A2?cl=en26 Mycobacterial antigens expressed under low oxygen tension. Inventors: Brian William James, Joanna Bacon, and Philip Marsh. United States Patent: 8,017,753 B2, Publication Date: 13 September 2011. https://www.google.com/patents/US8017753 Lectin domains of polypeptide GalNAc transferases exhibit glycopeptide binding specificity. Johannes W. Pedersen, Eric P. Bennett, T-BG Schjoldager Katrine, Morten Meldal, Andreas P. Holmér, Ola Blixt, Emiliano Cló, Steven B. Levery, Henrik Clausen, and Hans H. Wandall. Journal of Biological Chemistry, 16 September 2011; 286(37): 32684-32696. (MGII) http://www.jbc.org/content/286/37/32684.full MicroRNAs as a potential prognostic factor in gastric cancer. Baruch Brenner, Moshe B. Hoshen, Ofer Purim, Miriam Ben David, Karin Ashkenazi, Gideon Marshak, Yulia Kundel, Ronen Brenner, Sara Morgenstern, Marisa Halpern, Nitzan Rosenfeld, Ayelet Chajut, Yaron Niv and Michal Kushnir World Journal of Gastroenterology: WJG, 21 September 2011; 17(35): 3976. (MGII)

http://www.wjgnet.com/1007-9327/full/v17/i35/3976.htm Construction and analysis of genomic DNA genetic markers fir chips. Rao Longbing Molecular Plant Breeding, September 2011; 9(101): 1647-1653 http://biopublisher.cn/index.php/mpb/article/html/604 Blood typing. Inventors: Janine Robb, Linda K. Knowles, and Juraj Petrik. United States Patent: 8030006 B2; Publication Date: 11 October 2011; (MGII) https://www.google.com/patents/US8030006 Assessing antibody microarrays for space missions: effect of long-term storage, gamma radiation, and temperature shifts on printed and fluorescently labeled antibodies. Graciela de Diego-Castilla, Patricia Cruz-Gil, Eva Mateo-Martí, Patricia Fernández-Calvo, Luis A. Rivas, and Víctor Parro. Astrobiology, 18 October 2011; 11(8): 759-773. (MGII TAS) Metatranscriptomic analysis of extremely halophilic viral communities. Fernando Santos, Mercedes Moreno-Paz, Inmaculada Meseguer, Cristina López, Ramon Rosselló-Mora, Víctor Parro, and Josefa Antón. The ISME Journal, October 2011; 5(10): 1621-1633. (MGII TAS) http://www.nature.com/ismej/journal/v5/n10/full/ismej201134a.html TGFβ-signaling in squamous cell carcinoma occurring in recessive dystrophic epidermolysis bullosa. Julia Knaup, Christina Gruber, Barbara Krammer, Verena Ziegler, Johann Bauer, and Thomas Verwanger. Analytical Cellular Pathology, October 2011; 34(6): 339-353. (MGII) Effects of soil properties and time of exposure on gene expression of Enchytraeus albidus (Oligochaeta). Susana IL Gomes, Sara C. Novais, Amadeu MVM Soares, and Mónica JB Amorim. Soil Biology and Biochemistry, October 2011; 43(10): 2078-2084. (MG Compact) (we have pdf-file) A screening assay based on host-pathogen interaction models identifies a set of novel antifungal benzimidazole derivatives. Anke Burger-Kentischer, Doris Finkelmeier, Petra Keller, Jörg Bauer, Holger Eickhoff, Gerald Kleymann, Walid Abu Rayyan, Anurag Singh, Klaus Schröppel, Karin Lemuth, Karl-Heinz Wiesmüller and Steffen Rupp Antimicrobial Agents and Chemotherapy, October 2011; 55(10): 4789-4801. (MGII) http://aac.asm.org/content/55/10/4789.full Serum galectin-2,-4, and-8 are greatly increased in colon and breast cancer patients and promote cancer cell adhesion to blood vascular endothelium. Hannah Barrow, Xiuli Guo, Hans H. Wandall, Johannes W. Pedersen, Bo Fu, Qicheng Zhao, Chen Chen, Jonathan M. Rhodes, and Lu-Gang Yu. Clinical Cancer Research, 15 November 2011; 17(22): 7035-7046. (MGII) http://clincancerres.aacrjournals.org/content/17/22/7035.full

In-vitro and in-vivo expression analysis of pneumococcal vaccine candidates: pilus-1 components. Gabriella De Angelis PhD Theses, 30 November 2011; Università degli Studi di Napoli Federico II, Italy, 92 pp. (MGII) http://www.fedoa.unina.it/8759/1/Gabriella_De_Angelis.pdf Fast DNA and protein microarray tests for the diagnosis of hepatitis C virus infection on a single platform. Stuart WJ Ember, Holger Schulze, Alan J. Ross, Julie Luby, Mizanur Khondoker, Gerard Giraud, Jonathan G. Terry, Ilenia Ciani, Chaker Tlili, Jason Crain, Anthony J. Walton, Andrew R. Mount, Peter Ghazal, Till T. Bachmann, Colin J. Campbell Analytical and Bioanalytical Chemistry, November 2011; 401(8): 2549-2559. (MGII) http://www.research.ed.ac.uk/portal/files/11538342/Fast_DNA_and_protein_microarray_tests_for_the_diagnosis_of_hepatitis_C_virus_infection_on_a_single_platform.pdf Correlation of genomic and physiological traits of Thermoanaerobacter species with biofuel yields. Christopher L. Hemme, Matthew W. Fields, Qiang He, Ye Deng, Lu Lin, Qichao Tu, Housna Mouttaki, Aifen Zhou, Xueyang Feng, Zheng Zuo, Bradley D. Ramsay, Zhili He, Liyou Wu, Joy Van Nostrand, Jian Xu, Yinjie J. Tang, Juergen Wiegel, Tommy J. Phelps and Jizhong Zhou Applied and Environmental Microbiology, November 2011; 77(22): 7998-8008. (MGII) http://aem.asm.org/content/77/22/7998.long Wildtype p53-specific antibody and T-cell responses in cancer patients. Anders Elm Pedersen, Anette Stryhn, Sune Justesen, Mikkel Harndahl, Susanne Rasmussen, Frede Donskov, Mogens H. Claesson, Johannes W. Pedersen, Hans H. Wandall, Inge Marie Svane, Søren Buus Journal of Immunotherapy, November-December 2011; 34(9): 629-640. (MGII) Biomarkers for Human Papilloma Virus-Associated Cancers. Inventors: Dohun Pyeon, Paul F. Lambert, Michael A. Newton, and Paul G. Ahlquist. U.S. Patent Application: 2011/0301059 A1, Publication Date: 8 December 2011; (MGII) https://www.google.com/patents/US20110301059 Balanced translocation in comparative hybridization. Inventor: Mansoor S. Mohammed United States Patent: 8,076,074, Publication Date: 13 December 2011. https://www.google.com/patents/US8076074 A microbial oasis in the hypersaline Atacama subsurface discovered by a life detector chip: implications for the search for life on Mars. Victor Parro, Graciela de Diego-Castilla, Mercedes Moreno-Paz, Yolanda Blanco, Patricia Cruz-Gil, José A. Rodríguez-Manfredi, David Fernández-Remolar, Felipe Gómez, Manuel J. Gómez, Luis A. Rivas, Cecilia Demergasso, Alex Echeverría, Viviana N. Urtuvia, Marta Ruiz-Bermejo, Miriam García-Villadangos, Marina Postigo, Mónica Sánchez-Román, Guillermo Chong-Díaz, and Javier Gómez-Elvira Astrobiology, 20 December 2011; 11(10): 969-996. (MGII TAS) http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3242637/ Utilization of DNA microarrays for detection and identification of selected Fusarium species from the Czech Republic. Lucie Pavlátová, David Novotný, Jan Hodek, Jana Chrpová, and Jaroslava Ovesná. Czech Journal of Food Sciences, December 2011; 29: S93-S101. (MG Compact) http://agriculturejournals.cz/publicFiles/54750.pdf

Evidence for intranasal antinuclear autoantibodies in patients with chronic rhinosinusitis with nasal polyps. Bruce K. Tan, Quan-Zhen Li, Lydia Suh, Atsushi Kato, David B. Conley, Rakesh K. Chandra, Jinchun Zhou et al. James Norton, Roderick Carter, Monique Hinchcliff, Kathleen Harris, Anju Peters, Leslie C. Grammer, Robert C. Kern, Chandra Mohan, Robert P. Schleimer Journal of Allergy and Clinical Immunology, December 2011; 128(6): 1198-1206. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384688/pdf/nihms-324529.pdf Polymeric coatings on micro-and nanometric particles for bioapplications. Virginie Audonnet, Laurent Malaquin, and Jean-Louis Viovy. Bioanalytical Reviews, December 2011, 3(2-4): 41-66. The Hypoxic Rat Model for Obstetric Complications in Schizophrenia. Andrea Schmitt, Peter Gebicke-Haerter, Ulrich Sommer, Markus Heck, Anja Lex, Mario Herrera-Marschitz, Mathias Zink, Markus Fendt, and Peter Falkai. Neuromethods, 2011; 59 (Animal Models of Schizophrenia and Related Disorders): 93-111. (MGII) Colorimetric Glutathione Assay CGA Kits Neuromethods, 2011; 59 (Animal Models of Schizophrenia and Related Disorders): 278. (MGII) Large-Scale Cell-Based Microarrays and Their Use with HEK293T Cells and Downstream Apoptotic Assays. Ella Palmer and Tom C. Freeman Methods in Molecular Biology, 2011 (15/11/10); 706 (Cell-Based Microarrays): 27-40 (MGII) A Novel Fluorescent Transcriptional Reporter for Cell-Based Microarray Assays. Tanya M. Redmond and Michael D. Uhler Methods in Molecular Biology, 2011 (15/11/10); 706 (Cell-Based Microarrays): 41-52. (MGII) Recombinant Lectin Microarrays for Glycomic Analysis. Daniel C. Propheter, Ku-Lung Hsu and Lara K. Mahal Methods in Molecular Biology, 2011 (15/11/10); 706 (Cell-Based Microarrays): 67-77. Screening and characterization of plant cell walls using carbohydrate microarrays. Iben Sørensen, and William GT Willats. Methods Molecular Biology, 2011 (13/12/10); 715 (The Plant Cell Wall): 115-121 (MGII) Recombinant lectin microarrays for glycomic analysis. Daniel C. Propheter, Ku-Lung Hsu, and Lara K. Mahal. Methods Molecular Biology, 2011 (27/1/11); 723 (Protein Microarray for Disease Anal.). 67-77. (MGII) Protein–Protein Interactions: An Application of Tus-Ter Mediated Protein Microarray System. Kalavathy Sitaraman and Deb K. Chatterjee Methods Molecular Biology, 2011 (27/1/11); 723 (Protein Microarray for Disease Analysis):185-200. Robust protein profiling with complex antibody microarrays in a dual-colour mode.

Christoph Schröder, Mohamed SS Alhamdani, Kurt Fellenberg, Andrea Bauer, Anette Jacob, and Jörg D. Hoheisel. Methods Molecular Biology, 2011; 785 (Protein Microarrays): 203-221. (MG2) Inkjet printing for the production of protein microarrays. Iain McWilliam, Marisa Chong Kwan, and Duncan Hall. Methods Molecular Biology, 2011; 785 (Protein Microarrays): 345-361. (MGII) http://www.researchgate.net/profile/Iain_Mcwilliam/publication/51627491_Inkjet_printing_for_the_production_of_protein_microarrays/links/5539068b0cf2239f4e7b6454.pdf Construction and Validation of a Prototype Microarray for Efficient and High-Throughput Genotyping of Angiosperms Using the PCR-Select™ cDNA Subtraction Kit. R. Jayasinghe, S. Kong, T. E. Coram, J. Kaganovitch, C. C. L. Xue, C. G. Li, and E. C. K. Pang. Clonetech Application Note, 2011; (MGII Compact) (we have pdf file) HER receptor-mediated dynamic signalling in breast cancer cells. Huizhong Hu PhD Theses, 2011; University of Edinburgh, UK, 206 pp. (MGII). https://www.era.lib.ed.ac.uk/bitstream/handle/1842/5575/Hu2011.pdf;jsessionid=21A1587445A069C3B95019FF14EE328C?sequence=1 Skeletal muscle atrophy: the role of miRNAs. Ricardo José Ribeiro Soares PhD Theses, 2011; Universidade de Coimbra, Spain, 154 pp. (MGII at Padova University). https://eg.sib.uc.pt/jspui/bitstream/10316/20416/1/Thesis-complete-final.pdf The expression of connexins in neurodegeneration. Ia Chevyreva PhD Theses, 2011; The University of Auckland, NZ, 245 pp. (MGII). https://researchspace.auckland.ac.nz/bitstream/handle/2292/7151/02whole.pdf?sequence=5 2010. Protein scaffolds for antibody mimics and other binding proteins. Inventors: Dasa Lipovsek, Richard W Wagner, Robert Kuimelis EU Patent Application: EP2141243 A2; Publication Date: 6 January 2010 Microrna biomarkers for human breast and lung cancer. Inventors: Ethan Dmitrovsky, Xi Liu, Sarah Freemantle, Lorenzo Sempere, Charles Cole, Sakari Kauppinen, Mads Bak, Mette Christensen US Patent Application: 2010/0010072 A1; Publication Date: 14 January 2010 Microarray analysis applied to the study of milk protein loci in cattle. S. Chessa, B. Castiglioni, G. Ceriotti, G. De Bellis, G. Pagnacco Italian Journal of Animal Science, 18 January 2010; 4(2s): 7-9 Polymerase.

Inventors: Philipp Holliger, Farid Ghadessy, Marc D'abbadie EU Patent Application: EP2145956 A2; Publication Date: 20 January 2010. Estudio de la interrelación entre las células stem mesenquimales y las células progenitoras hematopoyéticas en pacientes con síndrome mielodisplásico. Olga López Villar MD Thesis, Universidad de Salamanca, 22 January 2010; p.1-124 Chemoselective Reagents for Covalent Capture and Display of Glycans in Microarrays. Emiliano Cló, Ola Blixt, Knud J. Jensen European Journal of Organic Chemistry, January 2010; 2010(3): 540–554, Dynamic culture of droplet-confined cell arrays. Elisa Cimetta, Stefano Cagnin, Annamaria Volpatti, Gerolamo Lanfranchi, Nicola Elvassore Biotechnol Progress, January-February 2010; 26(1): 220-231. MChip: a Single-gene Diagnostic Microarray for Influenza A Erica D. Dawson, Kathy L. Rowlen In: Influenza. Molecular Virology, 1 February 2010; Qinghua Wang and Yizhi Jane Tao (Eds) Caister Academic Press, p. 153-172 Single-Step Procedure for the Isolation of Proteins at Near-Native Conditions from Mammalian Tissue for Proteomic Analysis on Antibody Microarrays. Mohamed Saiel Saeed Alhamdani, Christoph Schröder, Jens Werner, Nathalia Giese, Andrea Bauer and Jörg D. Hoheisel J Proteome Research, 5 February 2010; 9(2): 963-971. (MG2) A macroscopic to microscopic study of the effects of barotrauma and the potential for long-term survival in Pacific rockfish. Alena L. Pribyl PhD Thesis, Oregon State University, 9 February 2010; p. 1-173 High-throughput microarray profiling of cell wall polymers during hydrothermal pre-treatment of wheat straw. Ana Alonso-Simón, Jan Bach Kristensen, Jens Øbro, Claus Felby, William G.T. Willats, Henning Jørgensen Biotechnology and Bioengineering, 15 February 2010; 105(3): 509–514, Cancer Biomarkers Defined by Autoantibody Signatures to Aberrant O-Glycopeptide Epitopes. Hans H. Wandall, Ola Blixt, Mads A. Tarp, Johannes W. Pedersen, Eric P. Bennett, Ulla Mandel, Govind Ragupathi, Phil O. Livingston, Michael A. Hollingsworth, Joyce Taylor-Papadimitriou, Joy Burchell, and Henrik Clausen Cancer Research, 15 February 2010; 70(4): 1306-1313. Towards a multiplex cereal traceability tool using padlock probe ligation on genomic DNA Theo W. Prins, Jeroen P. van Dijk, A.M. Angeline Van Hoef, Marleen M. Voorhuijzen, Sylvia Broeders, Stefanie Trapmann, Ralf Seyfarth, Andreas Pardigol, Cor D. Schoen, Henk J.M. Aarts, Esther J. Kok Food Chemistry, 15 February 2010; 118(4): 966-973

Effect of annealing temperature on electrochemical characteristics of ruthenium oxide/multi-walled carbon nanotube composites. Min-Kang Seo, Abdelghani Saouab and Soo-Jin Park Materials Science and Engineering: B, 25 February 2010; 167(1): 65-69 Methods for distinguishing between lung squamous carcinoma and other non small cell lung cancers. Inventors: Ranit Aharonov, Nitzan Rosenfeld, Shai Rosenwald, Hila Benjamin US Patent Application: 2010/0047804 A1; Publication Date: 25 February 2010 Molecular markers from a BAC contig spanning the Rdr1 locus: a tool for marker-assisted selection in roses. Anja Biber, Helgard Kaufmann, Marcus Linde, Monika Spiller, Diro Terefe and Thomas Debener Theor Appl Genetics, February 2010; 120(4):765-773 Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae Yu Luo, Guang-Lei Lv, Wen-Ting Wu, Shan-Na Chen and Zai-Quan Cheng Mol Biol Rep., February 2010; 37(2): 875-892. Integrated Detection of Extended-Spectrum-Beta-Lactam Resistance by DNA Microarray-Based Genotyping of TEM, SHV, and CTX-M Genes. Dirk M. Leinberger, Verena Grimm, Maya Rubtsova, Jan Weile, Klaus Schröppel, Thomas A. Wichelhaus, Cornelius Knabbe, Rolf D. Schmid, and Till T. Bachmann Journal of Clinical Microbiology, February 2010; 48(2): 460-471 Prognostic significance of Dicer expression in ovarian cancer—link to global microRNA changes and oestrogen receptor expression. Areeg Faggad, Jan Budczies, Oleg Tchernitsa, Silvia Darb-Esfahani, Jalid Sehouli, Berit M Müller, Ralph Wirtz, Radoslav Chekerov, Wilko Weichert, Bruno Sinn, Christin Mucha, Nasr E Elwali, Reinhold Schfer, Manfred Dietel, Carsten Denkert The Journal of Pathology, February 2010; 220(3): 382–391 Contributions of the Pre- and Pro-Regions of a Staphylococcus hyicus Lipase to Secretion of a Heterologous Protein by Bacillus subtilis Thijs R. H. M. Kouwen, Allan K. Nielsen, Emma L. Denham, Jean-Yves F. Dubois, Ronald Dorenbos, Michael D. Rasmussen, Wim J. Quax, Roland Freudl, and Jan Maarten van Dijl Applied and Environmental Microbiology, February 2010; 76(3): 659-669 Microarray analysis of suppression subtracted hybridisation libraries identifies genes associated with breast cancer. Dong Liu Barraclough, Susan Sewart, Philip S. Rudland, Balvinder S. Shoker, D. Ross Sibson, Roger Barraclough, Michael P.A. Davies Analytical Cellular Pathology, February 2010; 32(1-2): 87-99. High throughput screening of crystallization of materials. Inventors: Stephen R. Quake, Carl L. Hansen, James M. Berger United States Patent: 7670429 B2; Publication Date: 2 March 2010; Microarray Analysis of Efflux Pump Genes in Multidrug-Resistant Mycobacterium tuberculosis During Stress Induced by Common Anti-Tuberculous Drugs.

Anuj Kumar Gupta, Vishwa Mohan Katoch, Devendra Singh Chauhan, Rahul Sharma, Mradula Singh, Krishnamurthy Venkatesan, Vishnu Dutt Sharma. Microbial Drug Resistance, 15 March 2010; 16(1): 21-28 Protein-Mediated Synthesis of Nanostructured Titania with Different Polymorphs at Room Temperature. Ge Chen, Min Li, Fan Li, Shaorui Sun, Dingguo Xia Advanced Materials, 19 March 2010; 22(11): 1258–1262 Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli. Becky J. Rutherford, Robert H. Dahl, Richard E. Price, Heather L. Szmidt, Peter I. Benke, Aindrila Mukhopadhyay, and Jay D. Keasling. Applied and Environmental Microbiology, March 2010; 76(6): 1935-1945 Global transcriptional, physiological and metabolite analyses of Desulfovibrio vulgaris Hildenborough responses to salt adaptation. Zhili He, Aifen Zhou, Edward Baidoo, Qiang He, Marcin P. Joachimiak, Peter Benke, Richard Phan, Aindrila Mukhopadhyay, Christopher L. Hemme, Katherine Huang, Eric J. Alm, Matthew W. Fields, Judy Wall, David Stahl, Terry C. Hazen, Jay D. Keasling, Adam P. Arkin, and Jizhong Zhou Appl Environ Microbiology, March 2010; 76(5): 1574-1586 Development of a novel DNA microarray to detect bacterial pathogens in patients with chronic obstructive pulmonary disease (COPD). Tanya Curran, Wilson A. Coulter, Derek J. Fairley, Terence McManus, Joe Kidney, Mike Larkin, John E. Moore and Peter V. Coyle Journal of Microbiological Methods, March 2010; 80(3): 257-261 Antibody microarray typing, a novel technique for Streptococcus pneumoniae serotyping. J.M. Marimon, A. Monasterio, M. Ercibengoa, J. Pascual, I. Prieto, L. Simón and E. Perez-Trallero Journal of Microbiological Methods, March 2010; 80(3): 274-280 Experience-Dependent Gene Expression in Adult Visual Cortex Jiabin Chen, Homare Yamahachi and Charles D. Gilbert Cerebral Cortex, March 2010; 20(3): 650-660. Transcriptomic analysis of intestinal genes following acquisition of pea enation mosaic virus by the pea aphid Acyrthosiphon pisum. Véronique Brault, Sylvie Tanguy, Catherine Reinbold, Gaël Le Trionnaire, Joel Arneodo, Stéphanie Jaubert-Possamai, Grégory Guernec and Denis Tagu J Gen Virology, March 2010; 91(3): 802-808 Development and optimization of an 18S rRNA-based oligonucleotide microarray for the fungal order Eurotiales J.W. Hong, J.Y. Park, M. Fomina, G.M. Gadd Journal of Applied Microbiology, March 2010; 108(3): 985–997, Apparatus for detecting target molecules. Inventors: Torsten Schulz, Eugen Ermantraut, Ralf Ehricht, Klaus Peter Möbius, Gerd Wagner, Joachim Fischer, Thomas Ellinger European Union Patent: EP1642644 B1; Publication Date: 31 March 2010

Heat shock protein 27 confers resistance to androgen ablation and chemotherapy in prostate cancer cells through eIF4E C Andrieu, D Taieb, V Baylot, S Ettinger, P Soubeyran, A De-Thonel, C Nelson, C Garrido, A So, L Fazli, F Bladou, M Gleave, J L Iovanna and P Rocchi Oncogene, 1 April 2010; 29(13): 1883-1896. Microevolution of Group A Streptococci In Vivo: Capturing Regulatory Networks Engaged in Sociomicrobiology, Niche Adaptation, and Hypervirulence. Ramy K. Aziz, Rita Kansal, Bruce J. Aronow, William L. Taylor, Sarah L. Rowe, Michael Kubal, Gursharan S. Chhatwal, Mark J. Walker, Malak Kotb PLoS ONE, 14 April 2010; 5(4): e9798 Method for screening crystallization conditions in solution crystal growth. Inventors: Lawrence J. DeLucas, Terry L. Bray United States Patent: 7700363 B; Issue Date: 20 April 2010 Transcriptome Analysis of the Brucella abortus BvrR/BvrS Two-Component Regulatory System. Cristina Viadas, María C. Rodríguez, Felix J. Sangari, Jean-Pierre Gorvel, Juan M. García-Lobo, Ignacio López-Goñi PLoS ONE, 21 April 2010; 5(4): e10216 Markers for diagnosis of cancer and its use. Inventors: Inkyung Shin, Hyun Jin Park, JooYoung Choi, Hyae Jung Hyun, Kyeong-sun Shin, Seung Kook Park EU Patent Application: EP2177628 A2; Publication Date: 21 April 2010 Transcriptome Analysis of the Brucella abortus BvrR/BvrS Two-Component Regulatory System Cristina Viadas, Marı´a C. Rodrı´guez, Felix J. Sangari, Jean-Pierre Gorvel, Juan M. Garcı´a-Lobo, Ignacio Lo´ pez-Gon PLoS ONE, April 2010; 5(4): e10216 21 Candida glabrata tryptophan-based pigment production via the Ehrlich pathway. Sascha Brunke, Katja Seider, Ricardo Sergio Almeida, Antje Heyken, Christian Benjamin Fleck, Matthias Brock, Dagmar Barz, Steffen Rupp, Bernhard Hube Mol. Microbiology, April 2010; 76(1): 25-47 Preparation and application of microarrays for the detection of antibiotic resistance genes in samples isolated from Changchun, China Hao Lu, Xinglong Wang, Xulong Lang, Yingchao Wang, Yuan Dang, Fuxian Zhang, Jie Tang, Xiaoyan Li and Xin Feng Molecular Biology Reports, April 2010; 37(4): 1857-1865 Ozone fumigation (twice ambient) reduces leaf infestation following natural and artificial inoculation by the endophytic fungus Apiognomonia errabunda of adult European beech trees Maren Olbrich, Claudia Knappe, Marion Wenig, Elke Gerstner, Karl-Heinz Häberle, Mitsutoshi Kitao, Rainer Matyssek, Susanne Stich, Michael Leuchner, Herbert Werner, Katja Schlink, Gerhard Müller-Starck, Gerhard Welzl, Hagen Scherb, Dieter Ernst, Werner Heller and Günther Bahnweg Environmental Pollution, April 2010; 158(4): 1043-1050

Transcriptional signatures in leaves of adult European beech trees (Fagus sylvatica L.) in an experimentally enhanced free air ozone setting Maren Olbrich, Elke Gerstner, Günther Bahnweg, Karl-Heinz Häberle, Rainer Matyssek, Gerhard Welzl, Werner Heller and Dieter Ernst Environmental Pollution, April 2010; 158(4): 977-982 MicroRNA Profile of the Developing Mouse Retina. Laszlo Hackler Jr., Jun Wan , Anand Swaroop , Jiang Qian and Donald J. Zack Investigative Ophthalmology & Visual Science, April 2010; 51(4): 1823-1831 Array comparative genomic hybridisation of 52 subjects with a Smith–Magenis-like phenotype: identification of dosage sensitive loci also associated with schizophrenia, autism, and developmental delay. Stephen R Williams, Santhosh Girirajan, David Tegay, Norma Nowak, Eli Hatchwell, Sarah H Elsea J Med Genetics, April 2010; 47(4): 223-229 Low occurrence of safety hazards in coagulase negative staphylococci isolated from fermented foodstuffs. Sergine Even, Sabine Leroy, Cathy Charlier, Nouri Ben Zakour, Jean-Paul Chacornac, Isabelle Lebert, Emmanuel Jamet, Marie-Hélène Desmonts, Emmanuel Coton, Sylvie Pochet, Pierre-Yves Donnio, Michel Gautier, Régine Talon and Yves Le Loir International Journal of Food Microbiology, 30 April 2010; 139(1-2): 87-95 Estudio de células stem mesenquimales en pacientes con osteoporosis. Muntión Olave, María Sandra MD Thesis, Universidad de Salamanca, 7 May 2010; p.1-125 Cyclin K and cyclin D1b are oncogenic in myeloma cells. Véronique Marsaud, Guergana Tchakarska, Geoffroy Andrieux, Jian-Miao Liu, Doulaye Dembele, Bernard Jost, Joanna Wdzieczak-Bakala, Jack-Michel Renoir and Brigitte Sola Molecular Cancer, 10 May 2010; 9: 103 A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep Wendy JM Smith, Yutao Li, Aaron Ingham, Eliza Collis, Sean M McWilliam, Tom J Dixon, Belinda J Norris, Suzanne I Mortimer, Robert J Moore and Antonio Reverter BMC Veterinary Research, 26 May 2010; 6:27 Modulation of microRNA expression by budesonide, phenethyl isothiocyanate and cigarette smoke in mouse liver and lung. Alberto Izzotti, Patrizia Larghero, Cristina Cartiglia, Mariagrazia Longobardi, Ulrich Pfeffer, Vernon E. Steele and Silvio De Flora Carcinogenesis, May 2010; 31(5): 894-901. Transcriptome Changes in Culex quinquefasciatus (Diptera: Culicidae) Salivary Glands During West Nile Virus Infection. Girard, Yvette A.; Mayhew, George F.; Fuchs, Jeremy F.; Li, Huarong; Schneider, Bradley S.; McGee, Charles E.; Rocheleau, Thomas A.; Helmy, Hanan; Christensen, Bruce M.; Higgs, Stephen; Bartholomay, Lyric C. Journal of Medical Entomology, May 2010; 47(3): 421-435

Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization. Carmen Leida, Javier Terol, Gracia Martí, Manuel Agustí, Gerardo Llácer, María Luisa Badenes and Gabino Ríos Tree Physiology, May 2010; 30(5): 655-666. (MGII) http://treephys.oxfordjournals.org/content/30/5/655.full.pdf+html Sol–gel planar waveguides for improved fluorescence microarrays. Mélanie Bedu, Gabriel Sagarzazu, Thierry Gacoin, Pierre Audebert, Claude Weisbuch and Lucio Martinelli Thin Solid Films, 31 May 2010; 518(15): 4450-4457 Dual-color Proteomic Profiling of Complex Samples with a Microarray of 810 Cancer-related Antibodies. Christoph Schröder, Anette Jacob, Sarah Tonack, Tomasz P. Radon, Martin Sill, Manuela Zucknick, Sven Rüffer, Eithne Costello, John P. Neoptolemos, Tatjana Crnogorac-Jurcevic, Andrea Bauer, Kurt Fellenberg and Jörg D. Hoheisel Molecular & Cellular Proteomics, 1 June 2010; 9(6): 1271-1280. Temperature stress, gene expression, and innate immunity at the onset of cnidarian-dinoflagellate symbiosis Schnitzler, Christine E. PhD Thesis, Oregon State University, 1 June 2010; p. 1- 179 Funktionelle und molekulare Charakterisierung von FarR, einem Transkriptionsregulator der MarR Familie in Neisseria meningitides. Schielke, Stephanie PhD Thesis, Institut für Hygiene und Mikrobiologie, Würzburg, Germany, 4 June 2010; p. 1-109 Pharmaceutical composition comprising anti-miRNA antisense oligonucleotides. Inventors: Elmén, Joacim; Kauppinen, Sakari; Kearney, Phil EU Patent Application: EP2194129 A2; Publication Date: 9 June 2010 Qualitative differential screening. Inventors: Tocque, Bruno; Bracco, Laurent; Edon, Florence; Schweighoffer, Fabien USPatent Application: 20100144555 A1; Publication Date: 10 June 2010 Mycobacterial antigens expressed during latency. Inventors: James, Brian William; Marsh, Philip; Hampshire, Tobias EU Patent Application: EP2196473 A1; Publication Date: 16 June 2010 Antibodies to sulfated carbohydrates. Inventors: Tully, Sarah E.; Hsieh-Wilson, Linda United States Patent: 7745584 B; Publication Date: 29 June 2010 Critical role of TLR7 in the acceleration of systemic lupus erythematosus in TLR9-deficient mice. Marie-Laure Santiago-Raber, Isabelle Dunand-Sauthier, Tianfu Wu, Quan-Zhen Li, Satoshi Uematsu, Shizuo Akira, Walter Reith, Chandra Mohan, Brian L. Kotzin and Shozo Izui Journal of Autoimmunity, June 2010; 34(4): 339-348

High-resolution genome-wide analysis of chromosomal alterations in elastofibroma. Juan Luis García Hernández, Javier Ortiz Rodríguez-Parets, José María Valero, María Asunción Gomez Muñoz, M. Rocío Benito, Jesus M. Hernandez and Agustín Bullón Virchows Archiv, June 2010; 456(6): 681-687 VEGF-A and Serum Withdrawal Induced Changes in the Transcript Profile in Human Endometrial Endothelial Cells. Christian Moberg, Rob D. Catalano, D. Stephen Charnock-Jones, Matts Olovsson Reproductive Sciences, June 2010; 17(6): 590-611. Identification and genetic analysis of the APOSPORY locus in Hypericum perforatum L. Anna Schallau, Francesco Arzenton, Amal J. Johnston, Urs H hnel, David Koszegi, Frank R. Blattner, Lothar Altschmied, Georg Haberer, Gianni Barcaccia, Helmut B umlein1

The Plant Journal, June 2010; 62(5): 773–784 Functionalized Silicon Surfaces for Biological and Chemical Sensors. Touahir, L.; Sam, S.; Moraillon, A.; Ozanam, F.; Chazalviel, J.N.; Allongue, P.; de Villeneuve, C. Henry; Gabouze, N.; Djebbar, S.; Gouget-Laemmel, A.C. Sensor Letters, June 2010; 8(3): 447-456 Dual-color Proteomic Profiling of Complex Samples with a Microarray of 810 Cancer-related Antibodies. Christoph Schro¨der, Anette Jacob, Sarah Tonack, Tomasz P. Radon, Martin Sill, Manuela Zucknick, Sven Ru¨ ffer, Eithne Costello, John P. Neoptolemos, Tatjana Crnogorac-Jurcevic, Andrea Bauer, Kurt Fellenberg, and Jo¨ rg D. Hoheisel Molecular & Cellular Proteomics, June 2010; 9(6): 1271-1280. Coral larvae exhibit few measurable transcriptional changes during the onset of coral-dinoflagellate endosymbiosis. Christine E. Schnitzler, Virginia M. Weis Marine Genomics, June 2010; 3(2): 107–116 Gene Expression Profiles Characterize Inflammation Stages in the Acute Lung Injury in Mice. Isabelle Lesur, Julien Textoris, Béatrice Loriod, Cécile Courbon, Stéphane Garcia, Marc Leone, Catherine Nguyen PLoS ONE, 8 July 2010; 5(7): e11485 Blood group antibody screening. Inventors: Petrik, Juraj; Robb, Janine Scott; O'looney, Nichola Mary US Patent Application: 20100256005 A1; Publication Date: 10 July 2010 Gene expression signature for classification of cancers. Inventors: Aharonov, Ranit; Rosenfeld, Nitzan; Rosenwald, Shai; Barshack, Iris US Patent Application: 20100178653 A1; Publication Date: 15 July 2010 Microarray production with real-time verification and inspection Inventors: Ganz, Brian L.; Mickley, Mandel W.; Moulds, John Andrew; Brovold, Christopher T. European Patent: EP1638689 B1, Publication Date: 21 July 2010

Novel nucleotide and amino acid sequences, and methods of use thereof for diagnosis. Inventors: Sella-tavor, Osnat; Pollack, Sarah; Bazak, Lily; Tsypkin, Elena; Sztybel, Dan; Sameah-Greenwald, Shirley US Patent Application: 2010/0184021 A1; Publication Date: 22 July 2010 MicroRNA expression variability in human cervical tissues. Patrícia M. Pereira, João Paulo Marques, Ana Raquel Soares, Carreto L, and Manuel A. S. Santos PLoS One, 26 July 2010; 5(7): e11780. http://www.med.miami.edu/mnbws/documents/PEREIRA.pdf Genotype-dependent response to carbon availability in growing tomato fruit Marion Prudent, Nadia Bertin, Michel Génard, Stéphane Muños, Sophie Rolland, Virginie Garcia, Johann Petit, Pierre Baldet, Christophe Rothan, Mathilde Causse Plant, Cell & Environment, July 2010; 33(7): 1186–1204, Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils. Audra Nemir, Maude M. David, Ronan Perrussel, Amy Sapkota, Pascal Simonet, Jean-Michel Monier and Timothy M. Vogel Chemosphere, July 2010; 80(5): 600-607 Natural Mixtures of Persistent Organic Pollutants (POP) Increase Weight Gain, Advance Puberty, and Induce Changes in Gene Expression Associated with Steroid Hormones and Obesity in Female Zebrafish Jan L. Lyche; Rasoul Nourizadeh-Lillabadi; Camilla Almaas; Benedicte Stavik; Vidar Berg; Janneche Utne Sk re; Peter Alestr m; Erik Ropstad Journal of Toxicology and Environmental Health, Part A: Current Issues, July 2010; 73(15): 1032 – 1057 ‘Rejected’ vs. ‘rejecting’ transcriptomes in allogeneic challenged colonial urochordates. Matan Oren, Guy Paz, Jacob Douek, Amalia Rosner, Zvi Fishelson, Tamar L. Goulet, Kolja Henckel and Baruch Rinkevich Molecular Immunology, July 2010; 47(11-12): 2083-2093 MicroRNA expression differentiates between primary lung tumors and metastases to the lung. Iris Barshack, Gila Lithwick-Yanai, Arnon Afek, Kinneret Rosenblatt, Hila Tabibian-Keissar, Merav Zepeniuk, Lahav Cohen, Harel Dan, Orit Zion, Yulia Strenov, Sylvie Polak-Charcon and Marina Perelman Pathology - Research and Practice, 15 August 2010; 206(8): 578-584 Localized surface plasmon-enhanced fluorescence spectroscopy for highly-sensitive real-time detection of DNA hybridization Larbi Touahir, Elisabeth Galopin, Rabah Boukherroub, Anne Chantal Gouget-Laemmel, Jean-Noël Chazalviel, François Ozanam and Sabine Szunerits Biosensors and Bioelectronics, 15 August 2010; 25(12): 2579-2585 Effects of Hapten Density on the Induced Antibody Repertoire. Qian Li, Luis G. Rodriguez, David F. Farnsworth, Jeffrey C. Gildersleeve ChemBioChem, 16 August 2010; 11(12): 1686–1691

Agents, compositions and methods for treating pathologies in which regulating an ache-associated biological pathway is beneficial Inventors: Soreq, Hermona; Shaked, Iftach; Avni, Ran; Meerson, Ari US Patent Application: 20100216868 A1; Publication Date: 26 August 2010 Differential diagnosis of hepatocellular carcinoma from metastatic tumors in the liver using microRNA expression. Iris Barshack, Eti Meiri, Shai Rosenwald, Danit Lebanony, Meital Bronfeld, Sarit Aviel-Ronen, Kinneret Rosenblatt, Sylvie Polak-Charcon, Ilit Leizerman, Meital Ezagouri, Merav Zepeniuk, Norberto Shabes, Lahav Cohen, Sarit Tabak, Dalia Cohen, Zvi Bentwich and Nitzan Rosenfeld The International Journal of Biochemistry & Cell Biology, August 2010; 42(8): 1355-1362 Gfi1 Expression Is Controlled by Five Distinct Regulatory Regions Spread over 100 Kilobases, with Scl/Tal1, Gata2, PU.1, Erg, Meis1, and Runx1 Acting as Upstream Regulators in Early Hematopoietic Cells. Nicola K. Wilson, Richard T. Timms, Sarah J. Kinston, Yi-Han Cheng, S. Helen Oram, Josette-Renee Landry, Joanne Mullender, Katrin Ottersbach, and Berthold Gottgens Molecular and Cellular Biology, August 2010; 30(15): 3853-3863 Size exclusion chromatography of quantum dots by utilizing nanoparticle repelling surface of concentrated polymer brush Toshihiko Arita, Tomoka Yoshimura and Tadafumi Adschiri Nanoscale, September 2010; 2(8): 1467-1473 Multidimensional glycan arrays for enhanced antibody profiling Yalong Zhang, Christopher Campbell, Qian Li and Jeffrey C. Gildersleeve Mol. BioSyst., September 2010; 6(9): 1583-1591 A GOG 210 aCGH study of gain at 1q23 in endometrioid endometrial cancer in the context of racial disparity and outcome Carl Morrison, Jeffrey Miecznikowski, Kathleen M. Darcy, Jean M. Dolce, Eugene Kandel, Deborah O. Erwin, Song Liu, Lori Shepherd, David Cohn, D. Scott McMeekin, AnneMarie W. Block, Norma J. Nowak, Larry Maxwell Genes, Chromosomes and Cancer, September 2010; 49(9): 791–802, Satellite glia not DRG neurons constitutively activate EGFR but EGFR inactivation is not correlated with axon regeneration. Zubair Ahmed, Martin L. Read, Martin Berry and Ann Logan Neurobiology of Disease, September 2010; 39(3): 292-300 GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. Zhili He, Ye Deng, Joy D Van Nostrand, Qichao Tu, Meiying Xu, Christopher L Hemme, Xingyuan Li, Liyou Wu, Terry J Gentry, Yifeng Yin, Jost Liebich, Terry C Hazen and Jizhong Zhou ISME Journal, September 2010; 4(9): 1167-1179. Analysis conditions for proteomic profiling of mammalian tissue and cell extracts with antibody microarrays. Mohamed Saiel Saeed Alhamdani, Christoph Schro¨der and Jo¨rg D. Hoheisel Proteomics, September 2010; 10(17): 3203-3207 (MG2)

Transcriptional regulation of Elf-1: locus-wide analysis reveals four distinct promoters, a tissue-specific enhancer, control by PU.1 and the importance of Elf-1 downregulation for erythroid maturation. Fernando J. Calero-Nieto, Andrew D. Wood, Nicola K. Wilson, Sarah Kinston, Josette-Renée Landry and Berthold Göttgens Nucleic Acids Research, 1 October 2010; 38(19): 6363-6374. Markers for diagnosis of cancer and its use. Inventors: InKyung SHIN, Hyun jin PARK, Joo young CHOI, Hyae Jung HYUN, Kyeong-Sun SHIN, Seung kook PARK US Patent Application: US 2010/0255503 A1; Publication Date: 7 October 2010 Mycobacterial genes down-regulated during latency. Inventors: Brian William James, Tobias Hampshire, Philip Marsh United States Patent: 7811588 B; Publication Date: 12 October 2010; Method for stimulating immune response against Moraxella catarrhalis. Inventors: Timothy F. Murphy, Alan J. Lesse, Charmaine Kirkham United States Patent: 7811589 B; Publication Date: 12 October 2010 Lambda exonuclease pre-treatment for improved DNA-chip performance depends on the relative probe-target position. Anja Brinker, Holger Schulze, Till Bachmann and Robert Möller Biosensors and Bioelectronics, 15 October 2010; 26(2): 898-902 Early Embryonic Gene Expression Profiling of Zebrafish Prion Protein (Prp2) Morphants. Rasoul Nourizadeh-Lillabadi, Jacob Seilø Torgersen¤, Olav Vestrheim, Melanie König, Peter Aleström, Mohasina Syed PLoS One, 22 October 2010; 5(10): e13573. Translational control by the ribosomal protein Asc1p/Cpc2p in Saccharomyces cerevisiae. Nicole Rachfall PhD Theses, 27 October 2010; Georg-August-Universität, Göttingen, 185 pp. (MGII) http://d-nb.info/1043068872 Micrornas expression signature for determination of tumors origin. Inventors: NITZAN ROSENFELD, SHAI ROSENWALD, IRIS BARSHACK, DVORA NASS US Patent Application: 2010/0273172 A1; Publication Date: 28 October 2010 Restricted access of proteins to mannan polysaccharides in intact plant cell walls. Susan E. Marcus, Anthony W. Blake, Thhomas A. S. Benians, Kieran J. D. Lee, Callum Poyser, Lloyd Donaldson, Olivier Leroux, Artur Rogowski, Henriette L. Petersen, Alisdair Boraston, Harry J. Gilbert, William G. T. Willats, J. Paul Knox The Plant Journal, October 2010; 64(2): 191–203 A method based on the ligation detection reaction–universal array (LDR–UA) for the detection and characterization of Listeria and Campylobacter strains. Andrea Lauri, Bianca Castiglioni, Marco Severgnini, Chiara Gorni and Paola Mariani European Food Research and Technology, October 2010; 231(6): 985-998,

Detection of representative enteropathogenic bacteria, Vibrio spp., pathogenic Escherichia coli, Salmonella spp., Shigella spp., and Yersinia enterocolitica, using a virulence factor gene-based oligonucleotide microarray. Dong-Hun Kim, Bok-Kwon Lee, Yong-Dae Kim, Sung-Keun Rhee and Young-Chang Kim J Microbiology, October 2010; 48(5): 682-628. Direct detection of soil mRNAs using targeted microarrays for genes associated with lignin degradation. Vanessa L. Bailey, Sarah J. Fansler, Somnath Bandyopadhyay, Jeffrey L. Smith, Katrina M. Waters and Harvey Bolton Soil Biology and Biochemistry, October 2010; 42(10): 1793-1799 Characterisation of Host-bacterial Interaction in the Invasion Process of C. jejuni. Rebecca May King BHS Theses, October 2010; Griffith University, 188 pp. (MGII GOD) https://www120.secure.griffith.edu.au/rch/file/3de7e6d3-8f37-a176-1899-7ad5a68a9447/1/KingR_2011_02Thesis.pdf Recognition of the Helical Structure of β-1,4-Galactan by a New Family of Carbohydrate-binding Modules. Melissa Cid, Henriette Lodberg Pedersen, Satoshi Kaneko, Pedro M. Coutinho, Bernard Henrissat, William G. T. Willats and Alisdair B. Boraston The Journal of Biological Chemistry, 12 November 2010; 285(46): 35999-36009. Antibiotic susceptibility of members of the Lactobacillus acidophilus group using broth microdilution and molecular identification of their resistance determinants. Sigrid Mayrhofer, Angela H.A.M. van Hoek, Christiane Mair, Geert Huys, Henk J.M. Aarts, Wolfgang Kneifel and Konrad J. Domig International Journal of Food Microbiology, 15 November 2010; 144(1): 81-87 Methods and compositions for diagnosing complications of pregnancy. Inventors: Yaron Goren, Shlomit Gilad, Moshe Hod, Yariv Yogev US Patent Application: 2010/0291585 A1; Publication Date: 18 November 2010 Induction of defense gene homologues in wheat roots during interactions with Pseudomonas fluorescens Patricia A. Okubara, Douglas R. Call, Youn-sig Kwak and Daniel Z. Skinner Biological Control, November 2010; 55(2): 118-125 1.3 Mb de novo deletion in chromosome band 3q29 associated with normal intelligence in a child. William Cobb, Arne Anderson, Clesson Turner, Ruth D. Hoffman, Steven Schonberg and Sondra W. Levin European Journal of Medical Genetics, November-December 2010; 53(6): 415-418 Tumor and reproductive traits are linked by RNA metabolism genes in the mouse ovary: a transcriptome-phenotype association analysis. Ulises Urzúa, Garrison A Owens, Gen-Mu Zhang, James M Cherry, John J Sharp and David J Munroe BMC Genomics, 22 December 2010; 11(Suppl 5): S1

Parameters Governing Invasive Disease Propensity of Non-M1 Serotype Group A Streptococci. Peter G. Maamary, Martina L. Sanderson-Smith, Ramy K. Aziz, Andrew Hollands, Jason N. Cole, Fiona C. McKay, Jason D. McArthur, Joshua K. Kirk, Amanda J. Cork, Rachael J. Keefe, Rita G. Kansal, Hongmin Sun, William L. Taylor, Gursharan S. Chhatwal, David Ginsburg, Victor Nizet, Malak Kotb, Mark J. Walker J Innate Immun., December 2010; 2(6): 596-606. An antigen microarray immunoassay for multiplex screening of mouse monoclonal antibodies. Manlio Di Cristina, Luisa Nunziangeli, Maria Angela Giubilei, Barbara Capuccini, Lorenzo d'Episcopo,Giorgio Mazzoleni, Francesca Baldracchini, Roberta Spaccapelo & Andrea Crisanti Nature Protocols, December 2010; 5(12): 1932-1344. Microarray analysis of a microbe–mineral interaction. K. OLSSON-FRANCIS, R. VAN HOUDT, M. MERGEAY, N. LEYS, C. S. COCKELL Geobiology, December 2010; 8(5): 446–456 Biomonitoring by Antibody Microarrays V. Parro In: Handbook of Hydrocarbon and Lipid Microbiology, Timmis, K.N. (ed.), Springer, Berlin, Heidelberg, 2010; Part 33, p. 4063-4071 Antibody Microarrays for Expression Analysis. Christoph Schröder, Anette Jacob, Sven Rüffer, Kurt Fellenberg and Jörg D. Hoheisel Antibody Engineering, 2010; Part IV (Biomedical and Life Sciences), 429-445 Application of DNA Microarray for Screening Metagenome Library Clones Soo-Je Park, Jong-Chan Chae and Sung-Keun Rhee Methods Mol Biology, 2010; 668: 313-324. Contribución de los Microarrays genómicos al diagnóstico y pronóstico de los linfomas no Hodgkin de línea B. Cristina Robledo Montero MD Thesis, 2010; Universidad de Salamanca, Spain, p.1-215 Expressão de miRNAs no cérebro de Danio rerio exposto a etanol Violeta Silva Loureiro Alves Ferreira MS Theses, 2010; Universidade de Aveiro, Portugal, 79 pp. (MGII) http://core.ac.uk/download/pdf/15569160.pdf Production and Application of Glycan Microarrays Julia Busch, Ryan McBride and Steven R. Head Methods in Molecular Biology, 2010; 632 (Microarray Methods for Drug Discovery): 269-282 2009. Large scale multiplex PCR improves pathogen detection by DNA microarrays. Maria Palka-Santini, Berit E Cleven, Ludwig Eichinger, Martin Krönke, and Oleg Krut BMC Microbiology, 3 January 2009; 9: 1.

Revealing the dynamics of gene expression during Embryonic Genome Activation and first differentiation in the rabbit embryo using a dedicated array screening. Roger Dominique Leandri, Catherine Archilla, Linh Chi Bui, Nathalie Peynot, Zichuan Liu, Cedric Cabau, Annie Chastellier, Jean-Paul Renard, and Veronique Duranthon Physiological Genomics, 8 January 2009; 36(2): 98-113 (MGII) (we have pdf-file) http://www.researchgate.net/profile/Zichuan_Liu/publication/23465992_Revealing_the_dynamics_of_gene_expression_during_embryonic_genome_activation_and_first_differentiation_in_the_rabbit_embryo_with_a_dedicated_array_screening/links/0fcfd51384fd936ea4000000.pdf Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes. Zoran Minic, Elisabeth Jamet, Hélène San-Clemente, Sandra Pelletier, Jean-Pierre Renou, Christophe Rihouey, Denis PO Okinyo, Caroline Proux, Patrice Lerouge, and Lise Jouanin BMC Plant Biology, 16 January 2009; 9: 6. Virulence genes of Porphyromonas gingivalis W83 in chronic periodontitis Li Lin, Chen Li, Jingbo Liu, Dongmei Zhang, Jian Zhao, Yurong Kou, Ning Yu, Yaping Pan Acta Odontologica Scandinavica, January 2009; 67(5): 258–264. Copy number gain at 8q12.1-q22.1 is associated with a malignant tumor phenotype in salivary gland myoepitheliomas. Hedy Vékony, Kerstin Röser, Thomas Löning, Bauke Ylstra, Gerrit A. Meijer, Wessel N. van Wieringen, Mark A. van de Wiel, Beatriz Carvalho, Klaas Kok, C. René Leemans, Isa c van der Waal, Elisabeth Bloemena Genes, Chromosomes and Cancer, February 2009; 48(2): 202–212 Discovery of Stable and Variable Differences in the Mycobacterium avium subsp. paratuberculosis Type I, II, and III Genomes by Pan-Genome Microarray Analysis. Elena Castellanos, Alicia Aranaz, Katherine A. Gould, Richard Linedale, Karen Stevenson, Julio Alvarez, Lucas Dominguez, Lucia de Juan, Jason Hinds and Tim J. Bull Applied and Environmental Microbiology, February 2009; 75(3): 676-686. SR1-S1 HRAS Mutations and 11p allelic Imbalance in a Rare Case of Agminated Spitz Nevus: Bridging the Gap between Bench and Bedside through Collaborative Research. K. Sol-Church, S. Catalano, J. Holbrook, D. Stabley, K. Conard, and D. Shurman J Biomol Techniques, February 2009; 20(1): 31 Microarray transfection analysis of conserved genomic sequences from three immediate early genes. Xiaomei Ren and Michael D. Uhler Genomics, February 2009; 93(2): 159-168 A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. Nils Blüthgen, Stefan Legewie, Szymon M. Kielbasa, Anja Schramme, Oleg Tchernitsa, Jana Keil, Andrea Solf, Martin Vingron, Reinhold Sch fer, Hanspeter Herzel, Christine Sers FEBS Journal, February 2009; 276(4): 1024–1035 Variation in Salmonella enterica Serovar Typhi IncHI1 Plasmids during the Global Spread of Resistant Typhoid Fever.

Minh-Duy Phan, Claire Kidgell, Satheesh Nair, Kathryn E. Holt, Arthur K. Turner, Jason Hinds, Philip Butcher, Fiona J. Cooke, Nicholas R. Thomson, Richard Titball, Zulfiqar A. Bhutta, Rumina Hasan, Gordon Dougan, and John Wain Antimicrobial Agents and Chemotherapy, February 2009; 53(2): 716-727. Identification of genes, including the gene encoding p27Kip1, regulated by serine 276 phosphorylation of the p65 subunit of NF-κB Ratna Chakraborty Prasad, Xiaohui L. Wang, Brian K. Law, Bradley Davis, Gail Green, Braden Boone, Lauren Sims, Mary Law Cancer Letters, 8 March 2009; 275(1): 139-149 An evaluation framework for statistical tests on microarray data. Michael Dondrup, Andrea T. Hüser, Dominik Mertens and Alexander Goesmann Journal of Biotechnology, 10 March 2009; 140(1-2): 18-26 Stripping custom microRNA microarrays and the lessons learned about probe–slide interactions. Xiaoxiao Zhang, Wayne Xu, Jiankang Tan and Yan Zeng Analytical Biochemistry, 15 March 2009; (2): 222-227 Short-term glucocorticoid treatment increases insulin secretion in islets derived from lean mice through multiple pathways and mechanisms Malin Hult, Henrik Ortsäter, Gertrud Schuster, Florian Graedler, Johannes Beckers, Jerzy Adamski, Alexander Ploner, Hans Jörnvall, Peter Bergsten and Udo Oppermann Molecular and Cellular Endocrinology, 25 March 2009; 301(1-2): 109-116 The Role of Substrates in Microarray Experimentation and How to Choose the Correct Coating for Microarraying. Ruediger Dietrich, Daniel Haines, Rajendra Redkar, Alistair Rees In: Microarray Innovations: Technology and Experimentation, Gary Hardiman (Ed.), CRC Press, March 2009; p. 53-69 Evolutionary diversification of satellite DNA sequences from Leymus (Poaceae: Triticeae). Anamthawat-Jónsson, K.; Wenke, T.; Thórsson, Æ. T.h.; Sveinsson, S.; Zakrzewski, F.; Schmidt, T. Genome, 1 April 2009; 52(4): 381-390 Microtranscriptome regulation by gonadotropin-releasing hormone. Tony Yuen, Frederique Ruf, Tearina Chu and Stuart C. Sealfon Molecular and Cellular Endocrinology, 10 April 2009; 302(1): 12-17 Comparative Genomic Hybridization: DNA Preparation for Microarray Fabrication. Richard Redon, Diane Rigler and Nigel P. Carter In: DNA Microarrays for Biomedical Research: Methods and Protocols, Martin Dufva (ed.), Humana Press/Springer, 21 April 2009; vol. 529, p. 259-266 Fluorescence Lifetime Imaging of Quantum Dot Labeled DNA Microarrays. Gerard Giraud, Holger Schulze, Till T. Bachmann, Colin J. Campbell, Andrew R. Mount, Peter Ghazal, Mizanur R. Khondoker, Alan J. Ross, Stuart W.J. Ember, Ilenia Ciani, Chaker Tlili, Anthony J. Walton, Jonathan G. Terry and Jason Crain Int. J. Mol. Science, 24 April 2009; 10(4): 1930-1941

Extracellular guanosine and GTP promote expression of differentiation markers and induce S-phase cell-cycle arrest in human SH-SY5Y neuroblastoma cells. S. Guarnieri, R. Pilla, C. Morabito, S. Sacchetti, R. Mancinelli, G. Fanò and M.A. Mariggiò International Journal of Developmental Neuroscience, April 2009; 27(2): 135-147 The Role of Substrates in Microarray Experimentation and How to Choose the Correct Coating for Microarraying Ruediger Dietrich Daniel Haines Rajendra Redkar Alistair Rees In: Microarray Innovations: Technology and Experimentation, Gary Hardiman (Editor) Taylor & Francis, Inc., April 2009; p.53-70 Extracellular guanosine and GTP promote expression of differentiation markers and induce S-phase cell-cycle arrest in human SH-SY5Y neuroblastoma cells. S. Guarnieri, R. Pilla, C. Morabito, S. Sacchetti, R. Mancinelli, G. Fanò and M.A. Mariggiò International Journal of Developmental Neuroscience, April 2009; 27(2): 135-147 Both expanded and uncultured mesenchymal stem cells from MDS patients are genomically abnormal, showing a specific genetic profile for the 5q- syndrome. Lopez-Villar O, Garcia JL, Sanchez-Guijo FM, Robledo C, Villaron EM, Hernández-Campo P, Lopez-Holgado N, Diez-Campelo M, Barbado MV, Perez-Simon JA, Hernández-Rivas JM, San-Miguel JF, del Cañizo MC. Leukemia, April 2009; 23(4): 664-672. High-throughput screening of Erwinia chrysanthemi pectin methylesterase variants using carbohydrate microarrays Jens Øbro, Iben Sørensen, Patrick Derkx, Christian T. Madsen, Martin Drews, Martin Willer, Jørn D. Mikkelsen, William G. T. Willats Proteomics, April 2009; 9(7): 1861–1868 Resolving conflicting data on expression of the Tn antigen and implications for clinical trials with cancer vaccines. Qian Li, Miriam R. Anver, Donna O. Butcher and Jeffrey C. Gildersleeve Mol Cancer Therapeutics, April 2009; 8(4):971–979 Comparison of Comparative Genomic Hybridization Technologies Across Microarray Platforms. Susan D. Hester, Laura Reid, Norma Nowak, Wendell D. Jones, Joel S. Parker, Kevin Knudtson, William Ward, Jay Tiesman, and Nancy D. Denslow Biomol Tech., April 2009; 20(2): 135–151. High-Throughput Multiplex HLA-Typing by Ligase Detection Reaction (LDR) and Universal Array (UA) Approach. Clarissa Consolandi

In: Methods in Molecular Biology, v. 496 (DNA and RNA Profiling in Human Blood: Methods and Protocols), Humana Press, Spring 2009; p. 115-127. Neuromedin U is overexpressed in pancreatic cancer and increases invasiveness via the hepatocyte growth factor c-Met pathway Knut Ketterer, Bo Kong, Dietwalt Frank, Nathalia A. Giese, Andrea Bauer, Jörg Hoheisel, Murray Korc, Jörg Kleeff, Christoph W. Michalski, Helmut Friess Cancer Letters, 8 May 2009; 277(1): 72-81

Gene expression profiling predicts a three-gene expression signature of endometrial adenocarcinoma in a rat model Sandra Karlsson, Björn Olsson and Karin Klinga-Levan1 Cancer Cell International, 8 May 2009; 9: 12 Microsatellite instability profiling of Lynch syndrome-associated cancers. Ana Maria Monteiro Ferreira MD Thesis, Rijksuniversiteit Groningen, 13 May 2009; p. 1-129 HSP90B1, a thyroid hormone-responsive heat shock protein gene involved in photoperiodic signaling. Gemma Graham, Peter J. Sharp, Qiushi Li, Peter W. Wilson, Richard T. Talbot, Alison Downing and Timothy Boswell Brain Research Bulletin, 29 May 2009; 79(3-4): 201-207 A high density COX1 barcode oligonucleotide array for identification and detection of species of Penicillium subgenus Penicillium W. CHEN, K.A. SEIFERT, C.A. LÉVESQUE Molecular Ecology Resources, May 2009; 9(1s): 114–129 Optimization of a DNA microarray for global transcription analysis of Protochlamydia amoebophila. Müller, Albert Leopold MS Diploma, Universität Wien, Austria, May 2009; p. 1-93 Entwicklung eines Oligonukleotid-Mikroarrays für Diversitätsanalysen von Genen der dissimilatorischen Bisulfitreduktase in einem sauren Moorsystem. Wagner, Michael MS Diploma Thesis, Universität Wien, Austria, May 2009; p. 1-101 Nanoroughened plasmonic films for enhanced biosensing detection. Eric Le Moal, Sandrine Lévêque-Fort, Marie-Claude Potier and Emmanuel Fort Nanotechnology, 3 June 2009; 20(22): 225502, 7 pp Detection of endometrial secretion markers for assesment of endometriosis. Inventors: Ametzazurra, Amagoia; Nagore, Daniel; Martínez Martínez, Antonio; Simón, Buela Laureano European Patent Application EP2065707 A1; Publication Date: 3 June 2009 Expression of the leukemia oncogene Lmo2 is controlled by an array of tissue-specific elements dispersed over 100 kb and bound by Tal1/Lmo2, Ets, and Gata factors. Josette-Renée Landry , Nicolas Bonadies , Sarah Kinston, Kathy Knezevic, Nicola K. Wilson, S. Helen Oram, Mary Janes, Sandie Piltz, Michelle Hammett, Jacinta Carter, Tina Hamilton, Ian J. Donaldson, Georges Lacaud, Jonathan Frampton, George Follows, Valerie Kouskoff, and Berthold Göttgens Blood, 4 June 2009; 113(23): 5783-5792 Temporal aspects of laminar gene expression during the developmental stages of equine laminitis. Erik Noschka, Michel L. Vandenplas, David J. Hurley and James N. Moore Veterinary Immunology and Immunopathology, 15 June 2009; 129(3-4): 242-253

Transcriptomic and proteomic analysis of lycopene-overproducing Escherichia coli strains. Mickus, Brian E. PhD Thesis, MIT, Cambridge, USA, June 2009; p. 1- 345 Profiling RNA interference (RNAi)-mediated toxicity in neural cultures for effective short interfering RNA design Martin L. Read , Sohaib Mir,, Rachel Spice, Ruth J. Seabright, Ellen L. Suggate, Zubair Ahmed, Martin Berry, Ann Logan The Journal of Gene Medicine, June 2009; 11(6): 523–534, Genome-wide analysis reveals increased levels of transcripts related with infectivity in peanut lectin non-agglutinated promastigotes of Leishmania infantum. Pedro J. Alcolea, Ana Alonso, Alicia Sánchez-Gorostiaga, Mercedes Moreno-Paz, Manuel J. Gómez, Irene Ramos, Víctor Parro and Vicente Larraga Genomics, June 2009; 93(6): 551-564 Effect of FliK mutation on the transcriptional activity of the σ54 sigma factor RpoN in Helicobacter pylori Francois P. Douillard, Kieran A. Ryan, Jason Hinds and Paul W. O'Toole Microbiology, June 2009; 155(6): 1901-1911 Nuclease on chip. Insentors: Bachmann, Til; Barl, Timo; Köhn, Heinz Gerhard European Patent Application EP2107124 A1; Publication Date: 10 July 2009 Cytogenetic and cDNA Microarray Expression Analysis of MCF10 Human Breast Cancer Progression Cell Lines. Narasimharao V. Marella, Kishore S. Malyavantham, Jianmin Wang, Sei-ichi Matsui, Ping Liang, and Ronald Berezney Cancer Research, 15 July 2009; 69(14): 5946-5953. Method and device for dual array hybridization karyotype analysis. Inventors: Nowak, Norma; Conroy, Jeffrey M.; Johnson, Anthony United States Patent Application 20090186775 A1; Publication Date: 23 July 2009 Particle immobilized coating and uses thereof. Inventors: Guire, Patrick E.; Taton, Kristin S.; Wall, John V. United States Patent Application 20090186070 A1; Publication Date: 23 July 2009 Microarrays with Varying Carbohydrate Density Reveal Distinct Subpopulations of Serum Antibodies. Oyindasola Oyelaran, Qian Li, David Wayne Farnsworth and Jeffrey C. Gildersleeve J Proteome Research, July 2009; 8(7): 3529-3538. Spermatozoal transcriptome profiling for bull sperm motility: a potential tool to evaluate semen quality. Nathalie Bissonnette, Jean-Philippe Lévesque-Sergerie, Catherine Thibault and Guylain Boissonneault Reproduction, July 2009; 138(1): 65-80

MiR-92b and miR-9/9* Are Specifically Expressed in Brain Primary Tumors and Can Be Used to Differentiate Primary from Metastatic Brain Tumors. Dvora Nass , Shai Rosenwald , Eti Meiri, Shlomit Gilad, Hilla Tabibian-Keissar, Anat Schlosberg, Hagit Kuker, Netta Sion-Vardy, Ana Tobar, Oleg Kharenko, Einat Sitbon, Gila Lithwick Yanai, Eran Elyakim, Hila Cholakh, Hadas Gibori, Yael Spector, Zvi Bentwich, Iris Barshack , Nitzan Rosenfeld Brain Pathology, July 2009; 19(3): 375-383. Staphylococcus aureus virulence expression is impaired by Lactococcus lactis during mixed cultures. Sergine Even, Cathy Charlier, Sébastien Nouaille, Nouri L. Ben Zakour, Marina Cretenet, Fabien J. Cousin, Michel Gautier, Muriel Cocaign-Bousquet, Pascal Loubière, and Yves Le Loir Appl Environ Microbiology, July 2009; 75(13): 4459-4472 Pathogen detection in milk samples by ligation detection reaction-mediated universal array method. Cremonesi P, Pisoni G, Severgnini M, Consolandi C, Moroni P, Raschetti M, Castiglioni B. J Dairy Science, July 2009; 92(7): 3027-3039. High-throughput identification of clinically important bacterial pathogens using DNA microarray. Seung Min Yoo, Sang Yup Lee, Kyung Hee Chang, So Young Yoo, Nae Choon Yoo, Ki Chang Keum, Won Min Yoo, June Myung Kim and Jun Yong Choi Molecular and Cellular Probes, June-August 2009; 23(3-4): 171-177 Development of oligonucleotide microarray involving plasma polymerized acrylic acid. R. Jafari, F. Arefi-Khonsari, M. Tatoulian, D. Le Clerre, L. Talini and F. Richard Thin Solid Films, 3 August 2009; 517(19): 5763-5768 Method for identifying modulators of the dioxin/aryl hydrocarbon receptor (AHR) Inventors: Petra Von Stein, Patrik Andersson, Nikolai Kouznetsov, Lorenz Poellinger US Patent number: 7569352; Issue Date: 4 August 2009; Application number: 10/556,857 Array comparative genomic hybridization identifies genetic regions associated with outcome in aggressive diffuse large B-cell lymphomas. Cristina Robledo, Juan L. García, Dolores Caballero, Eulogio Conde, Reyes Arranz, Teresa Flores, Carlos Grande, José Rodríguez, Eva García, Ana I. Sáez, Marcos González, Norma C. Gutiérrez, Miguel A. Piris, Jesús M. Hernández Cancer, 15 August 2009; 115(16): 3728–3737 Effectiveness of an Innovative Prototype Subtracted Diversity Array (SDA) for Fingerprinting Plant Species of Medicinal Importance. Ruchira Jayasinghe, Lin Hai Niu, Tristan E. Coram, Stephan Kong, Janna Kaganovitch, Charlie C. L. Xue, Chun G. Li, Edwin C. K. Pang Planta Med., August 2009; 75(10): 1180-1185. Molecular basis of the myogenic profile of aged human skeletal muscle satellite cells during differentiation. Tiziana Pietrangelo, Cristina Puglielli, Rosa Mancinelli, Sara Beccafico, Giorgio Fanò and Stefania Fulle Experimental Gerontology, August 2009; 44(8): 523-531 Transcript responses in leaves of ozone-treated beech saplings seasons at an outdoor free air model fumigation site over two growing seasons. Maren Olbrich, Elke Gerstner, Gerhard Welzl, J. Barbro Winkler and Dieter Ernst

Plant and Soil, August 2009; 323(1-2): 61-74 Enhancement of the stability of microporous silica films in non-aqueous solvents at elevated temperature. Oki Muraza, Evgeny V. Rebrov, Mart H.J.M. de Croon and Jaap C. Schouten Microporous and Mesoporous Materials, August-September 2009; 124(1-3): 20-29 Apparatus and method for dispensing fluid, semi-solid and solid samples Inventors: John Austin, Peter D. Honkanen US Patent #: US 7585463, Issue Date: 8 September 2009; Method For Identifying Tff2 Regulating Agents. Inventors: Andersson, Patrik; Kouznetsov, Nikolai; Poellinger, Lorenz; Von Stein, Petra European Patent EP1625395 B1; Publication Date: 16 September 2009; An array of possibilities for pectin. Iben Sørensen, Henriette Lodberg Pedersen and William G.T. Willats Carbohydrate Research, 28 September 2009; 344(14): 1872-1878 Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid. Le Trionnaire G, Francis F, Jaubert-Possamai S, Bonhomme J, De Pauw E, Gauthier JP, Haubruge E, Legeai F, Prunier-Leterme N, Simon JC, Tanguy S, Tagu D. BMC Genomics, 29 September 2009; 10: 456. Disease-Specific Expression of Host Genes During Downy Mildew Infection of Arabidopsis. Robin P. Huibers, Mark de Jong, René W. Dekter, and Guido Van den Ackerveken Mol Plant Microbe Interaction, September 2009; 22(9): 1104-1115. Novel blue light-sensitive proteins from a metagenomic approach. Pathak GP, Ehrenreich A, Losi A, Streit WR, Gärtner W. Environmental Microbiology, September 2009; 11(9): 2388-2399 Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution. Millard AD, Zwirglmaier K, Downey MJ, Mann NH, Scanlan DJ. Environ Microbiology, September 2009; 11(9): 2370-2387. Gene expression and chromosomal location for susceptibility to Sjögren's syndrome. Paola Pérez, Juan-Manuel Anaya, Sergio Aguilera, Ulises Urzúa, David Munroe, Claudio Molina, Marcela A. Hermoso, James Michael Cherry, Cecilia Alliende, Nancy Olea, Edward Ruiz-Narváez and María-Julieta González J Autoimmun., September 2009; 33(2): 99-108. The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris. Christopher B. Walker, Zhili He, Zamin K. Yang, Joseph A. Ringbauer Jr., Qiang He, Jizhong Zhou, Gerrit Voordouw, Judy D. Wall, Adam P. Arkin, Terry C. Hazen, Sergey Stolyar, and David A. Stahl Journal of Bacteriology, September 2009; 191(18): 5793-5801

A protein microarray immunoassay for the serological evaluation of the antibody response in vertically transmitted infections. Ardizzoni A, Capuccini B, Baschieri MC, Orsi CF, Rumpianesi F, Peppoloni S, Cermelli C, Meacci M, Crisanti A, Steensgaard P, Blasi E. Eur J Clin Microbiol Infect Dis., September 2009; 28(9): 1067-1075. Development and validation of a species-independent functional gene microarray that targets lactic acid bacteria. Stefan Weckx, Joke Allemeersch, Roel Van der Meulen, Gino Vrancken, Geert Huys, Peter Vandamme, Paul Van Hummelen, and Luc De Vuyst Applied and Environmental Microbiology, October 2009; 75(20): 6488-6495 Development and assessment of Diversity Arrays Technology for high-throughput DNA analyses in Musa. Ange-Marie Risterucci, Isabelle Hippolyte, Xavier Perrier, Ling Xia, Vanessa Caig, Margaret Evers, Eric Huttner, Andrzej Kilian and Jean-Christophe Glaszmann Theor Appl Genetics, October 2009; 119(6): 1093-1103. Construction and evaluation of an ORFeome-based Brucella whole-genome DNA microarray Viadas C, Rodríguez MC, García-Lobo JM, Sangari FJ, López-Goñi I. Microb Pathog., October 2009; 47(4):189-195. Changes in gene expression in the permissive larval host lightbrown apple moth (Epiphyas postvittana, Tortricidae) in response to EppoNPV (Baculoviridae) infection. H. S. Gatehouse, J. Poulton, N. P. Markwick, L. N. Gatehouse, V. K. Ward, V. L. Young, Z. Luo, R. Schaffer, J. T. Christeller Insect Molecular Biology, October 2009; 18(5): 635–648 p63 and p73 Transcriptionally Regulate Genes Involved in DNA Repair. Yu-Li Lin, Shomit Sengupta, Katherine Gurdziel, George W. Bell, Tyler Jacks, Elsa R. Flores PLoS Genetics, October 2009; 5(10): e1000680 Variation in host specificity and gene content in strains from genetically isolated lineages of the ectomycorrhizal fungus Paxillus involutus s. lat. Jenny Hedh, Tomas Johansson and Anders Tunlid Mycorrhiza, October 2009; 19(8): 549-558. Novel nucleotide and amino acid sequences, and assays and methods of use thereof for diagnosis of breast cancer. Inventors: Toporik, Amir; Dahary, Dvir; Sorek, Rotem; Pollock, Sarah; Levine, Zurit; Akiva, Pinchas; Diber, Alexander; Novik, Amit; Sella-tavor, Osnat; Ayalon-soffer, Michal; Walach, Shira; Sameah-greenwald, Shirley; Shemesh, Ronen; Keren, Naomi; Shklar, Maxim United States Patent Application 20090286957 A1; Publication Date: 19 November 2009 Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis. Antoine D Rolland, Jean-Jacques Lareyre, Anne-Sophie Goupil, Jérôme Montfort, Marie-Jo Ricordel, Diane Esquerré, Karine Hugot, Rémi Houlgatte, Fréderic Chalmel and Florence Le Gac BMC Genomics, 20 November 2009; 10: 546

Real-time DNA microarray analysis Arjang Hassibi, Haris Vikalo, José Luis Riechmann and Babak Hassibi Nucleic Acids Research, November 2009; 37(20): e132. Global transcriptional response of pig brain and lung to natural infection by Pseudorabies virus JF Yuan, SJ Zhang, O Jafer, RA Furlong, OE Chausiaux, CA Sargent, GH Zhang and NA Affara BMC Microbiology, 1 December 2009; 9: 246 Sparse matrix system and method for identification of specific ligands or targets. Inventors: Daniel K. Yarbrough, Randal H. Eckert, Ben Wu, Elizabeth M. Hagerman, Wenyuan Shi, Maxwell H. Anderson, Fengxia Qi, Jian He US Patent Application # US 2009/0298707 A1; Publication Date: 3 December 2009; DArT markers for the rye genome - genetic diversity and mapping. Hanna Bolibok-Brągoszewska, Katarzyna Heller-Uszyńska, Peter Wenzl, Grzegorz Uszyński, Andrzej Kilian and Monika Rakoczy-Trojanowska BMC Genomics, 3 December 2009; 10: 578 MicroRNA-132 Potentiates Cholinergic Anti-Inflammatory Signaling by Targeting Acetylcholinesterase. Iftach Shaked, Ari Meerson, Yochai Wolf, Ran Avni, David Greenberg, Adi Gilboa-Geffen and Hermona Soreq Immunity, 10 December 2009; 31(6): 965-973 DNA polymerase. Inventors: Holliger, Philipp; Ghadessy, Farid; D'abbadie, Marc United States Patent Application 20090305292 A1; Publication Date: 10 December 2009 Highly sensitive and reusable fluorescence microarrays based on hydrogenated amorphous silicon–carbon alloys. L. Touahir, A. Moraillon, P. Allongue, J.-N. Chazalviel, C. Henry de Villeneuve, F. Ozanam, I. Solomon and A.C. Gouget-Laemmel Biosensors and Bioelectronics, 15 December 2009; 25(4): 952-955 Highly parallel introduction of nucleic acids into mammalian cells grown in microwell arrays. Tilak Jain, Ryan McBride, Steven Head and Enrique Saez Lab Chip, December 2009; 9(24): 3557-3566 Genexpressionsanalysen zur Charakterisierung primärer Mammatumoren im neoadjuvanten Setting. Tauchen, Anika PhD Thesis, Universität Bielefeld, Germany, December 2009; p.1-168 PASE: A Web-Based Platform for Peptide/Protein Microarray Experiments. Fabien Pamelard, Gael Even, Costin Apostol, Cristian Preda, Clarisse Dhaenens, Vronique Fafeur, Rémi Desmet and Oleg Melnyk Methods in Molecular Biology, 2009; 570 (Peptide Microarrays), Part 4: 413-430

High-Throughput Multiplex HLA-Typing by Ligase Detection Reaction (LDR) and Universal Array (UA) Approach. Clarissa Consolandi Methods in Molecular Biology, 2009; 496 (DNA and RNA Profiling in Human Blood), Part I, 115-127, Differential gene expression of industrial bioleaching transcriptomes by Leptospirillum ferrooxidans DNA Microarray Francisco Remonsellez, M. Moreno-Paz, V. Parro, C. Demergasso In: Advanced Materials Research, Biohydrometallurgy, Trans Tech Publications, Switzerland, Edgardo R. Donati, Marisa R. Viera, Eduardo L. Tavani, María A. Giaveno, Teresa L. Lavalle, Patricia A. Chiacchiarini Eds., 2009; p.71-73 Self-Assembly of PNA-Encoded Peptides into Microarrays. Francois Debaene and Nicolas Winssinger Methods in Molecular Biology, 2009; 570(3): 299-307 Progress towards Development of Microarrays for Routine Diagnostic Use Karen Kempsell, Sonal Shah, Susanna Sherwin, Richard Vipond, Nigel Silman In: Detection of Highly Dangerous Pathogens: Microarray Methods for BSL 3 and BSL 4 Agents (eds T. Kostic, P. Butaye and J. Schrenzel), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany, 2009; p. 153-168. Transcriptional Regulation in Liver and Testis Associated with Developmental and Reproductive Effects in Male Zebrafish Exposed to Natural Mixtures of Persistent Organic Pollutants (POP). Rasoul Nourizadeh-Lillabadi; Jan L. Lyche; Camilla Almaas; Benedicte Stavik; S. Jannicke Moe; Mona Aleksandersen; Vidar Berg, Kjetill S. Jakobsen, Nils Chr. Stenseth, Janneche Utne Sk re; Peter Alestr m; Erik Ropstad Journal of Toxicology and Environmental Health, Part A: Current Issues, 2009; 72(3-4): 112 - 130 Identification of Malignancy Factors by Analyzing Cystic Tumors of the Pancreas. Andrea Bauer, Jörg Kleeff, Melanie Bier, Martin Wirtz, Hany Kayed, Irene Esposito, Murray Korc, Mathias Hafner, Jörg D. Hoheisel, Helmut Friess Pancreatology, 2009; 9(1-2): 34-44 2008 A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation. Agnès Bonnet, Eddie Iannuccelli, Karine Hugot, Francis Benne, Maria F Bonaldo, Marcelo B Soares, François Hatey, and Gwenola Tosser-Klopp BMC Genomics, 14 January 2008; 9: 17 Solid-State, Dye-Labeled DNA Detects Volatile Compounds in the Vapor Phase. Joel White, Kathleen Truesdell, Lloyd B Williams, Mary S AtKisson, and John S Kauer PLoS Biology, 22 January 2008; 6(1): e9.

A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes. Ben Carter, Guanghui Wu, Martin J Woodward, and Muna F Anjum BMC Genomics, 29 January 2008; 9: 53. Autoinducer-2-Regulated Genes in Streptococcus mutans UA159 and Global Metabolic Effect of the luxS Mutation. Helena Sztajer, André Lemme, Ramiro Vilchez, Stefan Schulz, Robert Geffers, Cindy Ying Yin Yip, Celine M. Levesque, Dennis G. Cvitkovitch, and Irene Wagner-Döbler J Bacteriology, January 2008; 190(1): 401–415. Species of Environmental Mycobacteria Differ in Their Abilities To Grow in Human, Mouse, and Carp Macrophages and with Regard to the Presence of Mycobacterial Virulence Genes, as Observed by DNA Microarray Hybridization. Melanie J. Harriff, Martin Wu, Michael L. Kent, and Luiz E. Bermudez Appl Environ Microbiology, January 2008; 74(1): 275–285 High-throughput screening of monoclonal antibodies against plant cell wall glycans by hierarchical clustering of their carbohydrate microarray binding profiles. Isabel Moller, Susan E. Marcus, Ash Haeger, Yves Verhertbruggen, Rene Verhoef, Henk Schols, Peter Ulvskov, Jørn Dalgaard Mikkelsen, J. Paul Knox, and William Willats Glycoconjugate Journal, January 2008; 25(1): 37–48 A DNA Oligonucleotide Microarray for Detecting Human Astrovirus Serotypes. David W. Brown, Kerry B. Gunning, Dorothy M. Henry, Zuheir L. Awdeh, James P. Brinker, Saul Tzipori, and John E. Herrmann J Virol Methods, January 2008; 147(1): 86–92. On-chip hybridization kinetics for optimization of gene expression experiments. Elena Khomyakova, Mikheil A. Livshits, Marie-Caroline Steinhauser, Luce Dauphinot, Sylvia Cohen-Kaminsky, Jean Rossier, Françoise Soussaline, Marie-Claude Potier. BioTechniques, January 2008, 44(1): 109–117. Cell Microarray for Functional Exploration of Genomes. David Castel, Marie-Anne Debily, Amandine Pitaval, and Xavier Gidrol In: Methods in Molecular Biology, vol. 381: Microarrays: 2nd Edition: Volume 1: Synthesis Methods; J. B. Rampal (Ed.) Humana Press Inc., Totowa, NJ, 3 February 2008; v. 1, p. 375-384. Genotyping of Single Nucleotide Polymorphisms by Arrayed Primer Extension. Scott J. Tebbutt In: Methods in Molecular Biology, vol. 382: Microarrays: 2nd Edition: Volume 2: Applications and Data Analysis; J. B. Rampal (Ed.) Humana Press Inc., Totowa, NJ, 3 February 2008; v. 1, p. 149-161. Sandwich ELISA Microarrays: Generating Reliable and Reproducible Assays for High-Throughput Screens. Rachel M. Gonzalez, Susan M. Varnum, and Richard C. Zangar In: Methods in Pharmacology and Toxicology: Biomarker Methods in Drug Discovery and Development, F. Wang (Ed.); Humana Press, Totowa, NJ; 13 February 2008; p. 273-290

Genetic Diversity among Escherichia coli O157:H7 Isolates and Identification of Genes Linked to Human Infections. Guanghui Wu, Ben Carter, Muriel Mafura, Ernesto Liebana, Martin J. Woodward, and Muna F. Anjum Infection and Immunity, February 2008; 76(2): 845–856. Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. Bart J Janssen, Kate Thodey, Robert J Schaffer, Rob Alba, Lena Balakrishnan, Rebecca Bishop, Judith H Bowen, Ross N Crowhurst, Andrew P Gleave, Susan Ledger, Steve McArtney, Franz B Pichler, Kimberley C Snowden, and Shayna Ward BMC Plant Biology, 17 February 2008; 8: 16. Molecular identification of vertebrate species by oligonucleotide microarray in food and forensic samples. Fabrice Teletchea, Jacques Bernillon, Marilyne Duffraisse, Vincent Laudet and Catherine Hänni Journal of Applied Ecology, March 2008; 45(3): 967 - 975 MicroRNA expression in the adult mouse central nervous system. Mads Bak, Asli Silahtaroglu, Morten Møller, Mette Christensen, Martin F. Rath, Boris Skryabin, Niels Tommerup, and Sakari Kauppinen RNA, March 2008; 14(3): 432–444. Cohesin-dockerin microarray: Diverse specificities between two complementary families of interacting protein modules. Rachel Haimovitz, Yoav Barak , Ely Morag, Milana Voronov-Goldman, Yuval Shoham, Raphael Lamed, Edward A. Bayer Proteomics, March 2008; 8(5): 968-979 Systematic gene expression profiling of mouse model series reveals coexpressed genes. Marion Horsch, Sandra Schädler, Valerie Gailus-Durner, Helmut Fuchs, Helmut Meyer, Martin Hrabé de Angelis, Johannes Beckers Proteomics, March 2008; 8(6): 1248-1256 Sandwich ELISA Microarrays: Generating Reliable and Reproducible Assays for High-Throughput Screens Rachel M. Gonzalez; Susan M. Varnum; Richard C. Zangar In: Biomarker Methods in Drug Discovery and Development, Feng Wang (Ed.) Springer-Verlag New York, March 2008; p. 273-290 Zinc chloride inhibition of Nitrosococcus mobilis T.S. Radniecki , R.L. Ely Biotechnology and Bioengineering, 1 April 2008; 99(5): 1085-1095 MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins Srikumar Sengupta, Johan A. den Boon, I-How Chen, Michael A. Newton, Stephen A. Stanhope, Yu-Juen Cheng, Chien-Jen Chen, Allan Hildesheim, Bill Sugden, and Paul Ahlquist Proc Natl Acad Sci U S A, 15 April 2008; 105(15): 5874–5878. Expression Analysis of Human Endometrial Adenocarcinoma in an Inbred Rat Model. Sandra Karlsson and Karin Klinga-Levan

In: Advances in Experimental Medicine and Biology, Hormonal Carcinogenesis, V.; Jonathan J. Li, Sara A. Li, Suresh Mohla, Henri Rochefort and Thierry Maudelonde (Eds), Springer, New York, 24 April 2008; v. 617, p.503-518 Mining the Moraxella catarrhalis Genome: Identification of Potential Vaccine Antigens Expressed during Human Infection. Elizabeth A. Ruckdeschel, Charmaine Kirkham, Alan J. Lesse, Zihua Hu, and Timothy F. Murphy Infect Immunity, April 2008; 76(4): 1599–1607. Optimization of DNA hybridization analysis on microarrays with colorimetric detection. M. M. Ulyashova, M. Yu. Rubtsova, T. Bachmann and A. M. Egorov Moscow University Chemistry Bulletin, April 2008, pp. 63(2): 75–79. (Russian Version: Vestnik Moskovskogo Universiteta. Khimiya, 2008; 2: 96–101) Clinical array comparative genomic hybridization: a new paradigm. Patricia Chan, Arturo Anguiano, Kerri Hensley, Nida Keo, Yan Liu, Renee Sarno, Charles M Strom, Renius Owen Expert Opinion on Medical Diagnostics, April 2008; 2(4): 449-459 First improvements in the detection and quantification of label-free nucleic acids by laser-induced breakdown spectroscopy: Application to the deoxyribonucleic acid micro-array technology. Julien Le Meur, Denis Menut, Pascal Wodling, Laurent Salmon, Pierre-Yves Thro, Sylvie Chevillard and Nicolas Ugolin Spectrochimica Acta Part B: Atomic Spectroscopy, April 2008; 63(4): 465-473 MicroRNAs accurately identify cancer tissue origin. Nitzan Rosenfeld, Ranit Aharonov, Eti Meiri, Shai Rosenwald, Yael Spector, Merav Zepeniuk, Hila Benjamin, Norberto Shabes, Sarit Tabak, Asaf Levy, Danit Lebanony, Yaron Goren, Erez Silberschein, Nurit Targan, Alex Ben-Ari, Shlomit Gilad, Netta Sion-Vardy, Ana Tobar, Meora Feinmesser, Oleg Kharenko, Ofer Nativ, Dvora Nass, Marina Perelman, Ady Yosepovich, Bruria Shalmon, Sylvie Polak-Charcon, Eddie Fridman, Amir Avniel, Isaac Bentwich, Zvi Bentwich, Dalia Cohen, Ayelet Chajut & Iris Barshack Nature Biotechnology, April 2008; 26(4): 462-469 An oligonucleotide prokaryotic acidophile microarray: its validation and its use to monitor seasonal variations in extreme acidic environments with total environmental RNA. Garrido, Patricia; Gonzalez-Toril, Elena; Garcia-Moyano, Antonio; Moreno-Paz, Mercedes; Amils, Ricardo; Parro, Victor Environmental Microbiology, April 2008; 10(4):836-850. Anchoring of unmodified oligonucleotides on a chitosan-based array: applications to genotyping and gene expression. Clarissa Consolandi, Marco Severgnini, Giada Caredda and Gianluca De Bellis Analytical Biochemistry, 1 May 2008; 376(1): 39-43 Gene Expression Profiling of Flagellar Disassembly in Chlamydomonas reinhardtii Kara L. Chamberlain, Steven H. Miller, and Laura R. Keller Genetics, May 2008; 179(1): 7–19.

Putative Quorum-Sensing Regulator BlxR of Brucella melitensis Regulates Virulence Factors Including the Type IV Secretion System and Flagella Amy A. Rambow-Larsen, Gireesh Rajashekara, Erik Petersen, and Gary Splitter J Bacteriology, May 2008; 190(9): 3274–3282. Identification of a Xylogalacturonan Xylosyltransferase Involved in Pectin Biosynthesis in Arabidopsis. Jacob Krüger Jensen, Susanne Oxenbøll Sørensen, Jesper Harholt, Naomi Geshi, Yumiko Sakuragi, Isabel Møller, Joris Zandleven, Adriana J. Bernal, Niels Bjerg Jensen, Charlotte Sørensen, Markus Pauly, Gerrit Beldman, William G.T. Willats, and Henrik Vibe Scheller Plant Cell, May 2008; 20(5): 1289–1302. Whole Genomes: Sequence, Microarray and Systems Biology Matthew T. G. Holden Jodi A. Lindsay 1 In: Staphylococcus: Molecular Genetics, Jodi A Lindsay (Ed), Caister Academic Press, May 2008; p.1-28 Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species. Annie Rochette, Frédéric Raymond, Jean-Michel Ubeda, Martin Smith, Nadine Messier, Sébastien Boisvert, Philippe Rigault, Jacques Corbeil, Marc Ouellette, and Barbara Papadopoulou BMC Genomics, 29 May 2008; 9: 255. Transformation of MCF-10A cells by random mutagenesis with frameshift mutagen ICR191: A model for identifying candidate breast-tumor suppressors. Helena Zientek-Targosz, Dimiter Kunnev, Lesleyann Hawthorn, Mikhail Venkov, Sei-Ichi Matsui, Richard T Cheney, and Yuri Ionov Mol Cancer, 5 June 2008; 7: 51. Identification of Phox2b-regulated genes by expression profiling of cranial motoneuron precursors. Patrick Pla, Marie-Rose Hirsch, Stéphane Le Crom, Simone Reiprich, Vincent Harley, Christo Goridis Neural Development, 19 June 2008; 3: 14. The trypanosome transcriptome is remodelled during differentiation but displays limited responsiveness within life stages. V Lila Koumandou, Senthil Kumar A Natesan, Tatiana Sergeenko, and Mark C Field BMC Genomics, 23 June 2008; 9: 298. PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes. Anna Git, Inmaculada Spiteri, Cherie Blenkiron, Mark J Dunning, Jessica CM Pole, Suet-Feung Chin, Yanzhong Wang, James Smith, Frederick J Livesey, and Carlos Caldas Breast Cancer Research, 27 June 2008; 10(3): R54. Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data. Javier Serrania, Frank-Jörg Vorhölter, Karsten Niehaus, Alfred Pühler, Anke Becker Journal Biotechnology, 30 June 2008; 135(3): 309–317 A description of the origins, design and performance of the TRAITS–SGP Atlantic salmon Salmo salar L. cDNA microarray.

J B Taggart, J E Bron, S A M Martin, P J Seear, B Høyheim, R Talbot, S N Carmichael, L A N Villeneuve, G E Sweeney, D F Houlihan, C J Secombes, D R Tocher, and A J Teale J Fish Biology, June 2008; 72(9): 2071–2094. Innovative integrated system for real-time measurement of hybridization and melting on standard format microarrays. Yann Marcy, Pierre-Yves Cousin, Maxime Rattier, Gordana Cerovic, Guilhem Escalier, Gilles Béna, Maurice Guéron, Lorcan McDonagh, Françoise le Boulaire, Henri Bénisty, Claude Weisbuch, Jean-Christophe Avarre Biotechniques, June 2008; 44(7): 913-20 A simple strategy for the creation of a recombinant lectin microarray. Ku-Lung Hsu, Jeffrey C. Gildersleeve and Lara K. Mahal Molecular Biosystems, June 2008; 4(6): 654-62 Microarray-based Detection of Antibiotic Resistance Genes in Salmonella. Angela H. A. M. van Hoek & Henk J. M. Aarts Food Anal. Methods, June 2008; 1(1): 95-108 A versatile gold surface approach for fabrication and interrogation of glycoarrays. Zheng-Liang Zhi, Nicolas Laurent, Andrew K. Powell, Rositsa Karamanska, Margherita Fais, Josef Voglmeir, Adam Wright, Jonathan M. Blackburn, Paul R. Crocker, David A. Russell, Sabine Flitsch, Rob A. Field, Jeremy E. Turnbull Chembiochem, 2 July 2008; 9(10): 1568-1575 A genome-wide 20 K citrus microarray for gene expression analysis M Angeles Martinez-Godoy, Nuria Mauri, Jose Juarez, M Carmen Marques, Julia Santiago, Javier Forment, and Jose Gadea BMC Genomics, 3 July 2008; 9: 318. Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes. Andrew P Dare, Robert J Schaffer, Kui Lin-Wang, Andrew C Allan, and Roger P Hellens Plant Methods, 7 July 2008; 4: 17. Development and application of a microarray meter tool to optimize microarray experiments. Richard JD Rouse, Katrine Field, Jennifer Lapira, Allen Lee, Ivan Wick, Colleen Eckhardt, C Ramana Bhasker, Laura Soverchia and Gary Hardiman BMC Research Notes, 11 July 2008; 1: 45 Rad53 regulates replication fork restart after DNA damage in Saccharomyces cerevisiae. Shawn J. Szyjka, Jennifer G. Aparicio, Christopher J. Viggiani, Simon Knott, Weihong Xu, Simon Tavaré, and Oscar M. Aparicio Genes & Development, 15 July 2008; 22(14): 1906–1920. Modulation of gene expression in drug resistant Leishmania is associated with gene amplification, gene deletion and chromosome aneuploidy. Jean-Michel Ubeda, Danielle Légaré, Frédéric Raymond, Amin Ahmed Ouameur, Sébastien Boisvert, Philippe Rigault, Jacques Corbeil, Michel J Tremblay, Martin Olivier, Barbara Papadopoulou, and Marc Ouellette Genome Biology, 18 July 2008; 9(7): R115

Microarray and molecular genetic analysis of aberrant splicing in human drug metabolizing cytochromes P450 CYP2D6 and CYP2B6 (German Title: Analyse von alternativem Spleien in den Cytochrom P450 Enzymen 2D6 und 2B6 mithilfe molekularbiologischer Techniken und eines neu entwickelten Mikroarrays) Hofmann, Marco Hans Ph.D. Thesis, Universitätsbibliothek der Universität Stuttgart, Accepted: 24 July 2008 Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1. Nicklas Bonander, Cecilia Ferndahl, Petter Mostad, Martin DB Wilks, Celia Chang, Louise Showe, Lena Gustafsson, Christer Larsson, and Roslyn M Bill BMC Genomics, 31 July 2008; 9: 365. Gene Expression Patterns During the Larval Development of European Sea Bass (Dicentrarchus Labrax ) by Microarray Analysis. M. J. Darias, J. L. Zambonino-Infante, K. Hugot, C. L. Cahu and D. Mazurais Marine Biotechnology, July 2008; 10(4): 416-428 Multiple actions of lysophosphatidic acid on fibroblasts revealed by transcriptional profiling. Catelijne Stortelers, Ron Kerkhoven, and Wouter H Moolenaar BMC Genomics, 14 August 2008; 9: 387 cDNA microarray profiles of canine mammary tumour cell lines reveal deregulated pathways pertaining to their phenotype. Rao NA, van Wolferen ME, van den Ham R, van Leenen D, Groot Koerkamp MJ, Holstege FC, Mol JA. Animal Genetics, August 2008; 39(4): 333-45 In Situ Assembly Of Protein Microarrays Inventors: Chatterjee Deb K.; Sitaraman Kalavathy; Hartley James L.; Baptista Cassio; Munroe David J. US Patent 20080214408 A1 Application Number: 12/105636; Publication Date: 04 September 2008 Protein Microarray On-Demand: A Novel Protein Microarray System. Deb K. Chatterjee, Kalavathy Sitaraman, Cassio Baptista, James Hartley, Thomas M. Hill, and David J. Munroe PLoS ONE, 24 September 2008; 3(9): e3265. Dissecting T cell lineage relationships by cellular barcoding. Koen Schepers, Erwin Swart, Jeroen W.J. van Heijst, Carmen Gerlach, Maria Castrucci, Daoud Sie, Mike Heimerikx, Arno Velds, Ron M. Kerkhoven, Ramon Arens, and Ton N.M. Schumacher J Exp Medicine, 29 September 2008; 205(10): 2309–2318 Simultaneously subtyping of all influenza A viruses using DNA microarrays. Xueqing Han, Xiangmei Lin, Bohua Liu, Yihong Hou, Jinhai Huang, Shaoqiang Wu, Jian Liu, Lin Mei, Guangle Jia and Qingyu Zhu Journal of Virological Methods, September 2008; 152(1-2): 117-121 Genotyping DNA chip for the simultaneous assessment of antibiotic resistance and pathogenic potential of extraintestinal pathogenic Escherichia coli.

Timo Barl, Ulrich Dobrindt, Xiaolei Yu, Don J. Katcoff, David Sompolinsky, Stéphane Bonacorsi, Jörg Hacker, Till T. Bachmann Int J Antimicrob Agents, September 2008; 32(3): 272-277. Design and analysis of mismatch probes for long oligonucleotide microarrays. Ye Deng, Zhili He, Joy D Van Nostrand and Jizhong Zhou BMC Genomics, 17 October 2008; 9: 491 Design and analysis of mismatch probes for long oligonucleotide microarrays. Ye Deng, Zhili He, Joy D Van Nostrand, and Jizhong Zhou BMC Genomics, 17 October 2008; 9: 491. Mitochondrial Serine Acetyltransferase Functions as a Pacemaker of Cysteine Synthesis in Plant Cells. Florian H. Haas, Corinna Heeg, Rafael Queiroz, Andrea Bauer, Markus Wirtz, and Rüdiger Hell Plant Physiology, October 2008; 148(2): 1055–1067. Development of a 16S rRNA gene-based prototype microarray for the detection of selected actinomycetes genera. Martina Kyselková, Jan Kopecký, Tamás Felföldi, Ladislav Čermák, Marek Omelka, Geneviève L. Grundmann, Yvan Moënne-Loccoz and Markéta Ságová-Marečková Antonie Van Leeuwenhoek, October 2008; 94(3): 439-453 A 200-antibody microarray biochip for environmental monitoring: searching for universal microbial biomarkers through immunoprofiling. Luis A. Rivas, Miriam Garca-Villadangos, Mercedes Moreno-Paz, Patricia Cruz-Gil, Javier Gomez-Elvira and Victor Parro Analytical Chemistry, 1 November 2008; 80(21): 7970-7979 A multiplexed protein microarray for the simultaneous serodiagnosis of human immuno-deficiency virus/hepatitis C virus infection and typing of whole blood. Stewart T.G. Burgess, Fiona Kenyon, Nichola O’Looney, Alan J. Ross, Marisa Chong Kwan, John S. Beattie, Juraj Petrik, Peter Ghazal, Colin J. Campbell Analytical Biochemistry, 1 November 2008; 382(1): 9-15 Comparative genomics of wild type yeast strains unveils important genome diversity. Laura Carreto, Maria F Eiriz, Ana C Gomes, Patrícia M Pereira, Dorit Schuller, and Manuel AS Santos BMC Genomics, 4 November 2008; 9: 524. Temporal and functional profile of the transcriptional regulatory network in the early regenerative response to partial hepatectomy in the rat. Egle Juskeviciute, Rajanikanth Vadigepalli, and Jan B Hoek BMC Genomics, 6 November 2008; 9: 527. A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. Ben F Koop, Kristian R von Schalburg, Jong Leong, Neil Walker, Ryan Lieph, Glenn A Cooper, Adrienne Robb, Marianne Beetz-Sargent, Robert A Holt, Richard Moore, Sonal Brahmbhatt, Jamie Rosner, Caird E Rexroad, III, Colin R McGowan, and William S Davidson BMC Genomics, 17 November 2008; 9: 545.

Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach. Debora F Rodrigues, Natalia Ivanova, Zhili He, Marianne Huebner, Jizhong Zhou, James M Tiedje BMC Genomics, 18 November 2008; 9: 547. Global Transcription and Metabolic Flux Analysis of Escherichia coli in Glucose-Limited Fed-Batch Cultivations K. Lemuth, T. Hardiman, S. Winter, D. Pfeiffer, M. A. Keller, S. Lange, M. Reuss, R. D. Schmid, and M. Siemann-Herzberg Appl Environ Microbiology, November 2008; 74(22): 7002–7015 Dye-doped silica nanoparticle labels/protein microarray for detection of protein biomarkers. Hong Wu, Qisheng Huo, Susan Varnum, Jun Wang, Guodong Liu, Zimin Nie, Jun Liu and Yuehe Lin Analyst, November 2008; 133(11): 1550-1555 Reverse-phase protein lysate microarrays for cell signaling analysis Brett Spurrier, Sundhar Ramalingam & Satoshi Nishizuka Nature Protocols, November 2008; 3(11): 1796–1808 Development of a biosensor microarray towards food screening, using imaging surface plasmon resonance. Sabina Rebe Raza, Maria G.E.G. Bremera, Marcel Giesbersc and Willem Norde Biosensors and Bioelectronics, 1 December 2008; 24(4): 552-557 Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells Bérengère Marty, Virginie Maire, Eléonore Gravier, Guillem Rigaill, Anne Vincent-Salomon, Marion Kappler, Ingrid Lebigot, Fathia Djelti, Audrey Tourdès, Pierre Gestraud, Philippe Hupé, Emmanuel Barillot, Francisco Cruzalegui, Gordon C Tucker, Marc-Henri Stern, Jean-Paul Thiery, John A Hickman, and Thierry Dubois Breast Cancer Research, 3 December 2008; 10(6): R101. Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses. Nathalie Pavy, Brian Boyle, Colleen Nelson, Charles Paule, Isabelle Giguère, Sébastien Caron, Lee S. Parsons, Nancy Dallaire, Frank Bedon, Hugo Bérubé, Janice Cooke and John Mackay New Phytologist, December 2008; 180(4): 766 – 786. Microarray-based approach for genome-wide survey of nucleotide polymorphisms. Brian W. Brunelle and Tracy L. Nicholson Methods Mol Biology, Comparative Genomics, 2008; 396: 267-279 2007 Credentialing Preclinical Pediatric Xenograft Models Using Gene Expression and Tissue Microarray Analysis. Craig C. Whiteford, Sven Bilke, Braden T. Greer, Qingrong Chen, Till A. Braunschweig, Nicola Cenacchi, Jun S. Wei, Malcolm A. Smith, Peter Houghton, Christopher Morton, C. Patrick Reynolds,

Richard Lock, Richard Gorlick, Chand Khanna, Carol J. Thiele, Mikiko Takikita, Daniel Catchpoole, Stephen M. Hewitt and Javed Khan Cancer Research, 1 January 2007; 67(1): 32-40. Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse. Christian Voolstra, Diethard Tautz, Patrick Farbrother, Ludwig Eichinger, and Bettina Harr Genome Research, January 2007; 17(1): 42–49 The YfgL Lipoprotein Is Essential for Type III Secretion System Expression and Virulence of Salmonella enterica Serovar Enteritidis. Yann Fardini, Kamel Chettab, Olivier Grépinet, Sandrine Rochereau, Jérôme Trotereau, Philippa Harvey, Maïté Amy, Elisabeth Bottreau, Nat Bumstead, Paul A. Barrow, and Isabelle Virlogeux-Payant Infect Immunity, January 2007; 75(1): 358–370. Genetic Variation Suggests Interaction between Cold Acclimation and Metabolic Regulation of Leaf Senescence. Céline Masclaux-Daubresse, Sarah Purdy, Thomas Lemaitre, Nathalie Pourtau, Ludivine Taconnat, Jean-Pierre Renou, and Astrid Wingler Plant Physiology, January 2007; 143(1): 434–446. Protein array autoantibody profiles for insights into systemic lupus erythematosus and incomplete lupus syndromes. Q-Z Li, J Zhou, A E Wandstrat, F Carr-Johnson, V Branch, D R Karp, C Mohan, E K Wakeland, and N J Olsen Clin Exp Immunology, January 2007; 147(1): 60–70. Development of a single nucleotide polymorphism genotyping microarray platform for the identification of bovine milk protein genetic polymorphisms. Chessa S, Chiatti F, Ceriotti G, Caroli A, Consolandi C, Pagnacco G, Castiglioni B. J Dairy Science, January 2007; 90(1):451-464 A novel antibody microarray format using non-covalent antibody immobilization with chemiluminescent detection. Usui-Aoki K, Shimada K, Koga H Molecular BioSystems, January 2007; 3(1): 36-42 In vivo transcript profiling and phylogenetic analysis identifies suppressor of cytokine signaling 2 as a direct signal transducer and activator of transcription 5b target in liver. Oscar M. Vidal, Roxana Merino, Elizabeth Rico-Bautista, Leandro Fernandez-Perez, Dennis J. Chia, Joachim Woelfle, Mitsuru Ono, Boris Lenhard, Gunnar Norstedt, Peter Rotwein and Amilcar Flores-Morales Mol Endocrinology, January 2007; 21(1): 293-311 Identification of leukemia-specific fusion gene transcripts with a novel oligonucleotide array. Chun, Sung-Min; Kim, Yoo-Li; Choi, Hee Baeg; Oh, Yong-Taek; Kim, Yoo-Jin; Lee, Seok; Kim, Tai-Gyu; Yang, Eun Gyeong; Park, Yong-Keun; Kim, Dong-Wook; Han, Byoung-Don Molecular Diagnosis & Therapy, Spring 2007; 11(1): 21-28.

Profiling the Sulfation Specificities of Glycosaminoglycan Interactions with Growth Factors and Chemotactic Proteins Using Microarrays. Eric L. Shipp, Linda C. Hsieh-Wilson Chemistry & Biology, 1 February 2007; 14(2): 195-208. "NeuroStem Chip": a novel highly specialized tool to study neural differentiation pathways in human stem cells. Sergey V Anisimov, Nicolaj S Christophersen, Ana S Correia, Jia-Yi Li, and Patrik Brundin BMC Genomics, 8 February 2007; 8: 46. Diagnostic kit for determining the genotype of a human papilloma virus and method of using thereof. Inventors: Duck-Joo Lee, Woon-Won Jung, Hyun-Sook Kim, Inkwon,Han, Hyundae Litzville U.S. Patent Application Publication GO) Pub. NO.: US 2007/0031826 Al; Pub. Date: 8 February 2007 Analysis of environmental transcriptomes by DNA microarrays. Víctor Parro, Mercedes Moreno-Paz and Elena González-Toril Environ Microbiology, February 2007; 9(2): 453-64 Identification of novel genes regulated by chorionic gonadotropin in baboon endometrium during the window of implantation. J. R. A. Sherwin, A. M. Sharkey, P. Cameo, P. M. Mavrogianis, R. D. Catalano, S. Edassery and A. T. Fazleabas Endocrinology, February 2007; 148(2): 618-626 Sensitization to the conditioned rewarding effects of morphine modulates gene expression in rat hippocampus. Cynthia Marie-Claire, Cindie Courtin, Amelie Robert, Xavier Gidrol, Bernard Roques, Florence Noble Neuropharmacology, February 2007; 52(2): 430–435. The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms. Runchun Jing, Viacheslav Bolshakov & Andrew J Flavell Nature Protocols, February 2007; 2(1): 168-177 Transcriptional profiling of hematologic malignancies with a low-density DNA microarray. Patricia Álvarez, Pilar Sáenz, David Arteta, Antonio Martínez, Miguel Pocoví, Laureano Simón and Pilar Giraldo Clinical Chemistry, February 2007; 53(2): 259-267 A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs. Iwan Beuvink, Fabrice A. Kolb, Wolfgang Budach, Arlette Garnier, Joerg Lange, Francois Natt1, Uwe Dengler, Jonathan Hall, Witold Filipowicz and Jan Weiler Nucleic Acids Research, 13 March 2007; 35(7):e52. Validation of Mixed-Genome Microarrays as a Method for Genetic Discrimination. Yan Wan, Shira L. Broschat, and Douglas R. Call Appl Environ Microbiology, March 2007; 73(5): 1425–1432

Rapid identification, virulence analysis and resistance profiling of Staphylococcus aureus by gene segment-based DNA microarrays: Application to blood culture post-processing. Maria Palka-Santini, Stefan Pützfeld, Berit E.E. Cleven, Martin Krönke and Oleg Krut Journal of Microbiological Methods, March 2007; 68(3): 468-477. Genome-Wide Redistribution of Meiotic Double-Strand Breaks in Saccharomyces cerevisiae. Nicolas Robine, Norio Uematsu, Franck Amiot, Xavier Gidrol, Emmanuel Barillot, Alain Nicolas, and Valérie Borde Mol Cell Biology, March 2007; 27(5): 1868–1880. Construction and validation of a prototype microarray for efficient and high-throughput genotyping of angiosperms. Ruchira Jayasinghe, Stephan Kong, Tristan E. Coram, Janna Kaganovitch, Charlie C. L. Xue, Chun G. Li and Edwin C. K. Pang Plant Biotechnology Journal, March 2007; 5(2): 282-289. Detection of antimicrobial resistance genes of pathogenic Salmonella from swine with DNA microarray. Menggen Ma, Hongning Wang, Yong Yu, Dong Zhang and Shigui Liu Journal of Veterinary Diagnostic Investigation, March 2007; 19(2): 161-167 Protein microarrays. Nigel J Saunders In: Microarray Technology Through Applications, Francesco Falciani (Ed.), Taylor and Francis Pub., 29 March 2007; p. 211-226 Gene expression changes in long-term culture of T-cell clones: genomic effects of chronic antigenic stress in aging and immunosenescence. Dawn J Mazzatti, Andrew White, Rosalyn J Forsey, Jonathan R Powell, and Graham Pawelec Aging Cell, 1 April 2007; 6(2): 155–163. DNA microarray for rapid identification of Candida albicans in blood cultures. Inventors: Krut, Oleg; Palka-santini, Marie; Cleven, Berit; Krönke, Martin European Patent Application Number: EP20050109025; Publication Date: 04 April 2007 The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination Tao Liu, Qian Zhang, Lingling Wang, Lu Yu, Wenchuan Leng, Jian Yang, Lihong Chen, Junping Peng, Li Ma, Jie Dong, Xingye Xu, Ying Xue, Yafang Zhu, Wenliang Zhang, Li Yang, Weijun Li, Lilian Sun, Zhe Wan, Guohui Ding, Fudong Yu, Kang Tu, Ziliang Qian, Ruoyu Li, Yan Shen, Yixue Li, and Qi Jin BMC Genomics, 11 April 2007; 8: 100 Genomic resources for songbird research and their use in characterizing gene expression during brain development. XiaoChing Li, Xiu-Jie Wang, Jonathan Tannenhauser, Sheila Podell, Piali Mukherjee, Moritz Hertel, Jeremy Biane, Shoko Masuda, Fernando Nottebohm, and Terry Gaasterland Proc Natl Acad Sci U S A, 17 April 2007; 104(16): 6834–6839. In situ assembling of protein microarrays. Inventors: Kalavathy Sitaraman, James L. Hartley, Cassio Baptista, David J. Munroe

U.S. Patent Pub. NO.: US 2007/0087356 Al; Pub. Date: 19 April 2007 A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs. Iwan Beuvink, Fabrice A. Kolb, Wolfgang Budach, Arlette Garnier, Joerg Lange, Francois Natt, Uwe Dengler, Jonathan Hall, Witold Filipowicz, and Jan Weiler Nucleic Acids Research, April 2007; 35(7): e52. Functional Genomic Analysis Supports Conservation of Function Among Cellulose Synthase-Like A Gene Family Members and Suggests Diverse Roles of Mannans in Plants. Aaron H. Liepman, C. Joseph Nairn, William G.T. Willats, Iben Sørensen, Alison W. Roberts, and Kenneth Keegstra Plant Physiology, April 2007; 143(4): 1881–1893. A nifH -based Oligonucleotide Microarray for Functional Diagnostics of Nitrogen-fixing microorganisms. Lei Zhang, Thomas Hurek and Barbara Reinhold-Hurek Microbial Ecology, April 2007; 53(3): 456-470 Differential gene expression profiles in the hippocampus of senescence-accelerated mouse. Xiao-Rui Cheng, Wen-Xia Zhou, Yong-Xiang Zhang, Dong-Sheng Zhou, Rui-Fu Yang, Ling-Feng Chen Neurobiology of Aging, April 2007; 28(4): 497-506 Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays. Herbert Auer, David L Newsom, Norma J Nowak, Kirk M McHugh, Sunita Singh, Chack-Yung Yu, Yan Yang, Gail D Wenger, Julie M Gastier-Foster, and Karl Kornacker BMC Genomics, 30 April 2007; 8: 111. Olive variety identification by ligation detection reaction in a universal array format. Clarissa Consolandi, Luisa Palmieri, Silvia Doveri, Elena Maestri, Nelson Marmiroli, Silvia Reale, David Lee, Luciana Baldoni, Nicola Tosti, Marco Severgnini, Gianluca De Bellis and Bianca Castiglioni Journal of Biotechnology, 1 May 2007; 129(3): 565-574 Population structure of Pseudomonas aeruginosa. Lutz Wiehlmann, Gerd Wagner, Nina Cramer, Benny Siebert, Peter Gudowius, Gracia Morales, Thilo Köhler, Christian van Delden, Christian Weinel, Peter Slickers, and Burkhard Tümmler Proc Natl Acad Sci U S A, 8 May 2007; 104(19): 8101–8106. Multiplexed Waterborne Pathogen Detection Using DNA Microarrays. Timothy M. Straub American Water Works Research Foundation Publishers, 23 May 2007; p.1-64 Identification of novel striatal genes by expression profiling in adult mouse brain. A. Ghate, K. Befort, J.A.J. Becker, D. Filliol, C. Bole-Feysot, D. Demebele, B. Jost, M. Koch, and B.L. Kieffer Neuroscience, 25 May 2007; 146(3): 1182-1192 GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

Zhili He, Terry J Gentry, Christopher W Schadt, Liyou Wu, Jost Liebich, Song C Chong, Zhijian Huang, Weimin Wu, Baohua Gu, Phil Jardine, Craig Criddle and Jizhong Zhou ISME Journal, May 2007; 1(1): 67-77 Method for producing monoclonal antibodies. Inventors: Sawyer, Alan; De Masi, Federico EU Patent Application # EP20030725333 B1; Publication Date: 30 May 2007 Identification of putative ancestors of the multidrug-resistant Salmonella enterica serovar typhimurium DT104 clone harboring the Salmonella genomic island 1. J. Matiasovicova, P. Adams, P. A. Barrow, H. Hradecka, M. Malcova, R. Karpiskova, E. Budinska, L. Pilousova and I. Rychlik Archives of Microbiology, May 2007; 187(5): 415-424 The autoimmune regulator directly controls the expression of genes critical for thymic epithelial function. Qing-Guo Ruan, Kenneth Tung, Daniel Eisenman, Yulius Setiady, Sarah Eckenrode, Bing Yi, Sharad Purohit, Wei-Peng Zheng, Yan Zhang, Leena Peltonen and Jin-Xiong She J Immunology, 1 June 2007; 178(11): 7173-7180 Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site. Jessica E Butler, Qiang He, Kelly P Nevin, Zhili He, Jizhong Zhou, and Derek R Lovley BMC Genomics, 19 June 2007; 8: 180. The landscape of histone modifications across 1% of the human genome in five human cell lines. Christoph M. Koch, Robert M. Andrews, Paul Flicek, Shane C. Dillon, Ulaş Karaöz, Gayle K. Clelland, Sarah Wilcox, David M. Beare, Joanna C. Fowler, Phillippe Couttet, Keith D. James, Gregory C. Lefebvre, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Pawandeep Dhami, Cordelia F. Langford, Zhiping Weng, Ewan Birney, Nigel P. Carter, David Vetrie, and Ian Dunham Genome Research, June 2007; 17(6): 691–707 Gene Expression Profiling Identifies FKBP39 as an Inhibitor of Autophagy in Larval Drosophila Fat Body. Gábor Juhász, László G. Puskás, Orbán Komonyi, Balázs Érdi, Péter Maróy, Thomas P. Neufeld, and Miklós Sass Cell Death & Differentiation, June 2007; 14(6): 1181–1190. A DArT platform for quantitative bulked segregant analysis. Peter Wenzl, Harsh Raman, Junping Wang, Meixue Zhou, Eric Huttner, and Andrzej Kilian BMC Genomics, 28 June 2007; 8: 196. High-throughput mapping of cell-wall polymers within and between plants using novel microarrays. Moller, Isabel; Sorensen, Iben; Bernal, Adriana J.; Blaukopf, Claudia; Lee, Kieran; Obro, Jens; Pettolino, Filomena; Roberts, Alison; Mikkelsen, Jorn Dalgaard; Knox, J. Paul; Bacic, Antony; Willats, William G.T. Plant Journal, June 2007; 50(6): 1118-1128

Valproic Acid Induces Neuroendocrine Differentiation and UGT2B7 Up-Regulation in Human Prostate Carcinoma Cell Line. Alessandra Valentini, Michela Biancolella, Francesca Amati, Paolo Gravina, Roberto Miano, Giovanni Chillemi, Alessio Farcomeni, Susana Bueno, Giuseppe Vespasiani, Alessandro Desideri, Giorgio Federici, Giuseppe Novelli, and Sergio Bernardini Drug Metabolism and Disposition, June 2007; 35(6): 968-972 Microarrays in Drug Discovery and Development. Krishnanand D. Kumble and Sarita Kumble In: Handbook of Pharmaceutical Biotechnology, Shayne Cox Gad (Editor) Wiley, John & Sons, Inc.; June 2007; p. 633-660 Construction and validation of a first-generation Bordetella bronchiseptica long-oligonucleotide microarray by transcriptional profiling the Bvg regulon. Tracy L Nicholson BMC Genomics, 6 July 2007; 8: 220. Gene expression response of the rat small intestine following oral Salmonella infection. Wendy Rodenburg, Ingeborg M. J. Bovee-Oudenhoven, Evelien Kramer, Roelof van der Meer and Jaap Keijer Physiological Genomics, 18 July 2007; 30(2): 123-133 Light-Dependent Regulation of Cell Division in Ostreococcus: Evidence for a Major Transcriptional Input. Mickael Moulager, Annabelle Monnier, Béline Jesson, Régis Bouvet, Jean Mosser, Christian Schwartz, Lionel Garnier, Florence Corellou, and François-Yves Bouget Plant Physiology, July 2007; 144(3): 1360–1369. Construction and Validation of a Prototype Microarray for Efficient and High-Throughput Genotyping of Angiosperms Using the Clontech PCR-Select DNA Subtraction Kit. Jayasinghe, R., Kong, S., Coram, T.E., Kaganovitch, J., Xue, C.C.L., Li, C.G., and Pang, E.C.K. Clontechniques, July 2007; 29-32 Measuring global gene expression in polyploidy; a cautionary note from allohexaploid wheat. Rebecca Poole, Gary Barker, Ian D. Wilson, Jane A. Coghill and Keith J. Edwards Functional & Integrative Genomics, July 2007; 7(3): 207-219 Transcriptional responses of Arabidopsis thaliana ecotypeswith different glucosinolate profiles after attack by polyphagous Myzus persicae and oligophagous Brevicoryne brassicae. Anna Kuśnierczyk, Per Winge, Herman Midelfart, W. Scott Armbruster, John T. Rossiter and Atle Magnar Bones J Experimental Botany, July 2007; 58(10): 2537-2552 http://jxb.oxfordjournals.org/content/58/10/2537.long Profiling the antibody immune response against blood stage malaria vaccine candidates. Julian C. Gray, Patrick H. Corran, Elena Mangia, Michael W. Gaunt, Qiuxiang Li, Kevin K.A. Tetteh, Spencer D. Polley, David J. Conway, Anthony A. Holder, Tito Bacarese-Hamilton, Eleanor M. Riley and Andrea Crisanti Clinical Chemistry, July 2007; 53(7): 1244-53

Protein microarrays and quantum dot probes for early cancer detection. Aleksandra Zajac, Dansheng Song, Wei Qian and Tatyana Zhukov Colloids and Surfaces B: Biointerfaces, 1 August 2007; 58(2): 309-314 High-throughput microarray analysis of pectic polymers by enzymatic epitope deletion. Jens Øbro, Iben Sørensen, Isabel Moller, Michael Skjøt, Jørn Dalgaard Mikkelsen and William G.T. Willats Carbohydrate Polymers, 2 August 2007; 70(1): 77-81 Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough Aindrila Mukhopadhyay, Alyssa M. Redding, Marcin P. Joachimiak, Adam P. Arkin, Sharon E. Borglin, Paramvir S. Dehal, Romy Chakraborty, Jil T. Geller, Terry C. Hazen, Qiang He, Dominique C. Joyner, Vincent J. J. Martin, Judy D. Wall, Zamin Koo Yang, Jizhong Zhou, and Jay D. Keasling J Bacteriology, August 2007; 189(16): 5996–6010. Longitudinal analysis of gene expression in porcine skeletal muscle after post-injection local injury. Pierre J. Ferré, Laurence Liaubet, Didier Concordet, Magali SanCristobal, Emmanuelle Uro-Coste, Gwenola Tosser-Klopp, Agnès Bonnet, Pierre-Louis Toutain, François Hatey and Hervé P. Lefebvre Pharm Research, August 2007; 24(8):1480-1489 Altered transforming growth factor-beta pathway expression pattern in rat endometrial cancer. Sandra Karlsson, Erik Holmberg, Anders Askerlund, Karin Klinga Levan Cancer Genetics and Cytogenetics, August 2007; 177(1): 43-50 Device for Referencing Fluorescence Signals Inventors: Eugen Ermantraut, Thomas Kaiser, Jens Tuchscheerer United States Patent: 7262842 B2; Publication Date: 28 August 2007 (MG2) http://www.google.com/patents/US7262842 Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton. Jean Muller, André Mehlen, Guillaume Vetter, Mikalai Yatskou, Arnaud Muller, Frédéric Chalmel, Olivier Poch, Evelyne Friederich, and Laurent Vallar BMC Genomics, 29 August 2007; 8: 294. Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray Johan Vallon-Christersson, Johan Staaf, Anders Kvist, Patrik Medstrand, Åke Borg, and Carlos Rovira BMC Genomics, 29 August 2007; 8: 295. Gene expression profiling of chickpea responses to drought, cold and high-salinity using cDNA microarray Nitin L. Mantri Ph.D. Thesis, School of Applied Sciences, RMIT University, 30 August 2007; p. 1-320 Rapid default transition of CD4 T cell effectors to functional memory cells. K. Kai McKinstry, Susanne Golech, Won-Ha Lee, Gail Huston, Nan-Ping Weng, and Susan L. Swain J Exp Medicine, 3 September 2007; 204(9): 2199–2211. Interferon type I and type II responses in an Atlantic salmon (Salmo salar) SHK-1 cell line using the salmon TRAITS/SGP microarray.

Sam A M Martin, John B Taggart, Paul J Seear, James E Bron, Richard Talbot, Alan J Teale, Glen E Sweeney, Bjorn Hoyheim, Dominic F. Houlihan, Douglas R Tocher, Jun Zou, and Chris J Physiol Genomics, 5 September 2007; 32(1): 33-44 Cascade of transcriptional induction and repression during IL-2 deprivation-induced apoptosis. Aarne Fleischer, Marianne Duhamel, Luis A. Lopez-Fernandez, Manuel Muñoz, Maria Paz Rebollo, Fernando Alvarez-Franco and Angelita Rebollo Immunology Letters, 15 September 2007; 112(1): 9-29 Specific transcriptional responses induced by 8-methoxypsoralen and UVA in yeast. Michèle Dardalhon, Waka Lin, Alain Nicolas, and Dietrich Averbeck FEMS Yeast Research, September 2007; 7(6): 866–878. Detection of copy number changes at the NF1 locus with improved high-resolution array CGH. Shen, M H; Mantripragada, K; Dumanski, J P; Frayling, I; Upadhyaya, M Clinical Genetics, September 2007; 72(3): 238-244. Classification of Human Chromosome 21 Gene-Expression Variations in Down Syndrome: Impact on Disease Phenotypes. E. Aït Yahya-Graison, J. Aubert, L. Dauphinot, I. Rivals, M. Prieur, G. Golfier, J. Rossier, L. Personnaz, N. Créau, H. Bléhaut, S. Robin, J. M. Delabar, and M.-C. Potier Am J Hum Genetics, September 2007; 81(3): 475–491 Susceptibility of human and probiotic Bifidobacterium spp. to selected antibiotics as determined by the Etest method. Jaana Mättö, Angela H.A.M. van Hoek, Konrad J. Domig, Maria Saarela, Ana Belén Floréz, Elke Brockmann, Ernst Amtmann, Baltasar Mayo, Henk J.M. Aarts and Morten Danielsen. International Dairy Journal, September 2007; Pages 17(9): 1123-1131 Microarrays and Blood Diagnostics. Juraj Petrik and Janine Scott Robb In: From: Bioarrays: From Basics to Diagnostics, K. Appasani (Ed.) Humana Press Inc., Totowa, NJ, 4 October 2007; p.215-230 Rapid and sensitive detection of fluoroquinolone-resistant Escherichia coli from urine samples using a genotyping DNA microarray. Xiaolei Yu, Milorad Susa, Jan Weile, Cornelius Knabbe, Rolf D. Schmid and Till T. Bachmann International Journal of Medical Microbiology, 15 October 2007; 297(6): 417-429 Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map. Stefano Campanaro, Simone Picelli, Rossella Torregrossa, Laura Colluto, Monica Ceol, Dorella Del Prete, Angela D'Angelo, Giorgio Valle, and Franca Anglani BMC Genomics, 22 October 2007; 8: 383. SC2: A Novel Process for Manufacturing of High Density Multi-Purpose Chemical Micro-Arrays. Antonius J. Dikmans, Ulrike Beutling, Sabine Thiele and Ronald Frank In: Understanding Biology Using Peptides, XIX American Peptide Symposium, v.9, Sylvie E. Blondelle ed., Springer New York, 23 October 2007; pp. 736-737

Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans Are Specialized in the Maximal Viable Response to Heavy Metals. Sébastien Monchy, Mohammed A. Benotmane, Paul Janssen, Tatiana Vallaeys, Safiyh Taghavi, Daniel van der Lelie, and Max Mergeay J Bacteriology, October 2007; 189(20): 7417–7425. Relative developmental, environmental, and tree-to-tree variability in buds from field-grown apple trees. F. B. Pichler, E. F. Walton, M. Davy, C. Triggs, B. Janssen, J. N. Wünsche, J. Putterill and R. J. Schaffer Tree Genetics & Genomes, October 2007; 3(4): 329-339 Effects of dutasteride on the expression of genes related to androgen metabolism and related pathway in human prostate cancer cell lines. Michela Biancolella, Alessandra Valentini, Daniela Minella, Lucia Vecchione, Franca D’Amico, Giovanni Chillemi, Paolo Gravina, Susana Bueno, Gianluca Prosperini, Alessandro Desideri, Giorgio Federici, Sergio Bernardini and Giuseppe Novelli Investigational New Drugs, October 2007; 25(5): 491-497 Microarray analysis of gliomas reveals chromosomal position-associated gene expression patterns and identifies potential immunotherapy targets. Oscar Persson, Morten Krogh, Lao H. Saal, Elisabet Englund, Jian Liu, Ramon Parsons, Nils Mandahl, Åke Borg, Bengt Widegren and Leif G. Salford Journal of Neuro-Oncology, October 2007; 85(1): 11-24 Molecular Correlates of Host Specialization in Staphylococcus aureus. Lisa Herron-Olson, J. Ross Fitzgerald, James M. Musser, and Vivek Kapur PLoS ONE, 31 October 2007; 2(10): e1120. Seasonal photoperiodism regulates the expression of cuticular and signalling protein genes in the pea aphid. G. Le Trionnaire, S. Jaubert, B. Sabater-Muñoz, A. Benedetto, J. Bonhomme, N. Prunier-Leterme, D. Martinez-Torres, J.-C. Simon and D. Tagu Insect Biochemistry and Molecular Biology, October 2007; 37(10): 1094-1102 Monoclonal antibody microarray Inventors: Baptista, Cassio S.; Best, Lionel; Munroe, David J. WIPO Patent Application: WO/2007/130549 A1 Application Number: PCT/US2007/010792 Publication Date: 15 November 2007 DNA microarray for genotyping multidrug-resistant Pseudomonas aeruginosa clinical isolates. Jan Weileab, Rolf D. Schmidc, Till T. Bachmannc, Milorad Susaa, Cornelius Knabbea Diagn Microbiol Infect Disease, November 2007; 59(3): 325-338 Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule. Pierre-Yves Rescan, Jerome Montfort, Cécile Rallière, Aurélie Le Cam, Diane Esquerré, Karine Hugot BMC Genomics, 28 November 2007; 8: 438. Fast development of CE IVD molecular diagnostic kits: Highly specific microarray kit for 49 cystic fibrosis mutations.

(French Title: Développement rapide de kits de diagnostic moléculaires : exemple d’un kit biopuce hautement spécifique pour le diagnostic de 49 mutations de la mucoviscidose) V. Ubertelli, C. Josse, F. Bauland and C. Valat IRBM, November-December 2007, 28(5-6): 224-229 Characterization of microarray gene expression profiles of early stage thyroid tumours. Katalin Gombos, Eszter Szele, István Kiss, Tímea Varjas, László Puskás, László Kozma, Ferenc Juhász, Erik Kovács, István Szanyi and István Ember Cancer Genomics Proteomics, November-December 2007; 4(6): 403-409. Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance. Fanny Ramel, Cécile Sulmon, Francisco Cabello-Hurtado, Ludivine Taconnat, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Abdelhak El Amrani, Ivan Couée, and Gwenola Gouesbet BMC Genomics, 5 December 2007; 8: 450. Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice. Nicolas F Delahaye, Nicolas Coltel, Denis Puthier, Mathieu Barbier, Philippe Benech, Florence Joly, Fuad A Iraqi, Georges E Grau, Catherine Nguyen, and Pascal Rihet BMC Genomics, 6 December 2007; 8: 452. Thermodynamic behavior of short oligonucleotides in microarray hybridizations can be described using Gibbs free energy in a nearest-neighbor model. Stefan Weckx, Enrico Carlon, Luc De Vuyst, Paul Van Hummelen J Physical Chemistry, B; 6 December 2007; 111(48): 13583-13590 Mosquito transcriptome changes and filarial worm resistance in Armigeres subalbatus Matthew T Aliota, Jeremy F Fuchs, George F Mayhew, Cheng-Chen Chen, and Bruce M Christensen BMC Genomics, 18 December 2007; 8: 463. Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021. Vincent M Ulvé, Emeric W Sevin, Angélique Chéron, and Frédérique Barloy-Hubler BMC Genomics, 19 December 2007; 8: 467. Response of Desulfovibrio vulgaris to Alkaline Stress. Sergey Stolyar, Qiang He, Marcin P. Joachimiak, Zhili He, Zamin Koo Yang, Sharon E. Borglin, Dominique C. Joyner, Katherine Huang, Eric Alm, Terry C. Hazen, Jizhong Zhou, Judy D. Wall, Adam P. Arkin, and David A. Stahl J Bacteriolology, December 2007; 189(24): 8944–8952 Detection of DNA copy-number alterations in complex genomes using array comparative genomic hybridization. Wei-Wen Cai Methods in Molecular Biology, 2007; 381 (Microarrays v.1: Synthesis Methods): 105-119 Detecting ligated fragments on oligonucleotide microarrays: optimizing chip design, array multiplex ligation-dependent probe amplification modification, and hybridization parameters.

Ian R. Berry, Carol A. Delaney and Graham R. Taylor Methods in Molecular Biology, Microarrays v.1: Synthesis Methods, 2007; 381: 247-265 Microarray Technology Through Applications Ed. by Francesco Falciani, Routledge, 2007 ISBN 0203967275, 9780203967270 Development of oligonucleotide microarray system for differential diagnosis of enteric viruses in NY Park, YH Kim, HS Cho (A Korean Journal), 2007 The FAST Slide Guide to Protein Microarrays. Michael Walther, Brett Stillman, Andrea Frisse, Jens Beator and Lisa D’Anzi BioScience publication by Whatman/Schleicher & Schuell, 2007 (Slide-Show) The FAST Guide to Protein Microarrays. Michael Walther, Brett Stillman, Andrea Frisse, Jens Beator A publication by Whatman/Schleicher & Schuell, 2007; p.1-27 Etablierung von home-made cDNA Microarrays und Untersuchung der Genexpression bei Posttraumatischer Belastungsstörung. Judith Monika Zieker, geb. Fliegner M.D. Thesis; der Eberhard Karls Universität zu Tübingen; 2007; p.1-115 EFFECTS OF EPPONPV INFECTION ON GENE EXPRESSION IN EPIPHYAS POSTVITTANA LARVAE. H.S. Gatehouse, N.P. Markwick, J. Poulton, V.K. Ward, V. Young, S. Wilson, R. Dellow, K. Sneddon, L.N. Gatehouse, R.M. Simpson, B.J. Janssen, R. Bishop, R.J. Schaffer And J.T. Christeller New Zealand Plant Protection, 2007; 60: 33-41 2006 Reduced Expression of CAMTA1 Correlates with Adverse Outcome in Neuroblastoma Patients. Kai-Oliver Henrich, Matthias Fischer, Daniel Mertens, Axel Benner, Ruprecht Wiedemeyer, Benedikt Brors, André Oberthuer, Frank Berthold, Jun Stephen Wei, Javed Khan, Manfred Schwab and Frank Westermann Clinical Cancer Research, 1 January 2006; 12(1): 131-138. Kinetics of Cardiac Thin-Filament Activation Probed by Fluorescence Polarization of Rhodamine-Labeled Troponin C in Skinned Guinea Pig Trabeculae. Marcus G. Bell, Edward B. Lankford, Gregory E. Gonye, Graham C. R. Ellis-Davies, Donald A. Martyn, Michael Regnier, and Robert J. Barsotti Biophys Journal, 16 January 2006; 90(2): 531–543 Lymphovascular Invasion Is Associated With Poor Survival in Gastric Cancer: An Application of Gene-Expression and Tissue Array Techniques.

Bryan J. Dicken, Kathryn Graham, Stewart M. Hamilton, Sam Andrews, Raymond Lai, Jennifer Listgarten, Gian S. Jhangri, L Duncan Saunders, Sambasivarao Damaraju, and Carol Cass Annals of Surgery, January 2006; 243(1): 64–73. Transcriptional Profiling of Mycoplasma hyopneumoniae during Heat Shock Using Microarrays Melissa L. Madsen, Dan Nettleton, Eileen L. Thacker, Robert Edwards, and F. Chris Minion Infect Immunity, January 2006; 74(1): 160–166 Assessing genetic diversity in plasmids from Escherichia coli and Salmonella enterica using a mixed-plasmid microarray. Call DR, Kang MS, Daniels J, Besser TE. J Appl Microbiology, January 2006; 100(1): 15-28 Cellular Response of Shewanella oneidensis to Strontium Stress. Steven D. Brown, Madhavi Martin, Sameer Deshpande, Sudipta Seal, Katherine Huang, Eric Alm, Yunfeng Yang, Liyou Wu, Tingfen Yan, Xueduan Liu, Adam Arkin, Karuna Chourey, Jizhong Zhou, and Dorothea K. Thompson Appl Environ Microbiology, January 2006; 72(1): 890–900 A coumaroyl-ester-3-hydroxylase Insertion Mutant Reveals the Existence of Nonredundant meta-Hydroxylation Pathways and Essential Roles for Phenolic Precursors in Cell Expansion and Plant Growth. Nawroz Abdulrazzak, Brigitte Pollet, Jürgen Ehlting, Kim Larsen, Carole Asnaghi, Sebastien Ronseau, Caroline Proux, Mathieu Erhardt, Virginie Seltzer, Jean-Pierre Renou, Pascaline Ullmann, Markus Pauly, Catherine Lapierre, and Danièle Werck-Reichhart Plant Physiology, January 2006; 140(1): 30–48. Host Response to the Attenuated Poxvirus Vector NYVAC: Upregulation of Apoptotic Genes and NF-κB-Responsive Genes in Infected HeLa Cells. Susana Guerra, Luis A. López-Fernández, Alberto Pascual-Montano, José Luis Nájera, Angel Zaballos, and Mariano Esteban J Virology, January 2006; 80(2): 985–998 Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray. Neufeld, Josh D.; Mohn, William W.; de Lorenzo, Victor Environmental Microbiology. January 2006; 8(1): 126-140. STEC-EPEC oligonucleotide microarray: a new tool for typing genetic variants of the LEE pathogenicity island of human and animal Shiga toxin-producing Escherichia coli (STEC) and enteropathogenic E. coli (EPEC) strains. Patricia Garrido, Miguel Blanco, Mercedes Moreno-Paz, Carlos Briones, Ghizlane Dahbi, Jesús Blanco, Jorge Blanco and Víctor Parro Clinical Chemistry, February 2006; 52(2): 192-201 Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Hervé Sanguin, Aude Herrera, Christine Oger-Desfeux, Arnaud Dechesne, Pascal Simonet, Elisabeth Navarro, Timothy M. Vogel, Yvan Moënne-Loccoz, Xavier Nesme and Geneviève L. Grundmann Environmental Microbiology, February 2006; 8(2): 289-307

Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method. Henrik Bengtsson and Ola Hössjer BMC Bioinformatics, 1 March 2006; 7: 100. SimArray: a user-friendly and user-configurable microarray design tool. Richard P Auburn, Roslin R Russell, Bettina Fischer, Lisa A Meadows, Santiago Sevillano Matilla, and Steven Russell BMC Bioinformatics, 1 March 2006; 7: 102. Molecular signatures associated with clinical outcome in patients with high-risk head-and-neck squamous cell carcinoma treated by surgery and radiation. Uma Giri, Cheryl L. Ashorn, Latha Ramdas, David N. Stivers, Kevin Coombes, Adel K. El-Naggar, K. Kian Ang, Michael D. Story Int J Radiat Oncol Biol Physics, 1 March 2006; 64(3):670-677. Development of a chicken 5 K microarray targeted towards immune function. Jacqueline Smith, David Speed, Paul M Hocking, Richard T Talbot, Winfried GJ Degen, Virgil EJC Schijns, Elizabeth J Glass, and David W Burt BMC Genomics, 13 March 2006; 7: 49. Using DNA Microarrays To Identify Library-Independent Markers for Bacterial Source Tracking. Marilyn Soule, Edward Kuhn, Frank Loge, John Gay, and Douglas R. Call Appl Environ Microbiology, March 2006; 72(3): 1843–1851 Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough. S. R. Chhabra, Q. He, K. H. Huang, S. P. Gaucher, E. J. Alm, Z. He, M. Z. Hadi, T. C. Hazen, J. D. Wall, J. Zhou, A. P. Arkin, and A. K. Singh J Bacteriology, March 2006; 188(5): 1817–1828. An oligonucleotide microarray for mouse imprinted genes profiling. Vigé A, Gallou-Kabani C, Gross MS, Fabre A, Junien C, Jais JP. Cytogenetic and Genome Research, March 2006; 113(1-4): 253-261 Activation of nitric oxide synthase and induction of defense genes in Arabidopsis thaliana by bacterial lipopolysaccharides. Zeidler, Dana Ph.D. Thesis, Technische Universität München, Germany, 13 March 2006; Microarray analysis of thioacetamide-treated type 1 diabetic rats. Sachin S. Devi and Harihara M. Mehendale Toxicology and Applied Pharmacology, 1 April 2006; 212(1): 69-78 cDNA Microarray Screening in Food Safety. Sashwati Roy and Chandan K. Sen Toxicology, 3 April 2006; 221(1): 128–133. Membrane-associated transcripts in Arabidopsis; their isolation and characterization by DNA microarray analysis and bioinformatics.

Mark de Jong, Bas van Breukelen, Floyd R. Wittink, Frank L.H. Menke, Peter J. Weisbeek and Guido Van den Ackerveken The Plant Journal, 13 April 2006; 46(4): 708 - 721 Microarray expression profiling and functional characterization of AtTPS genes: Duplicated Arabidopsis thaliana sesquiterpene synthase genes At4g13280 and At4g13300 encode root-specific and wound-inducible (Z)-γ-bisabolene synthases. Dae-Kyun Ro, Jürgen Ehlting, Christopher I. Keeling, Roy Lin, Nathalie Mattheus and Jörg Bohlmann Archives of Biochemistry and Biophysics, 15 April 2006; 448(1-2): 104-116 Development of non-agglutination microarray blood grouping. Robb JS, Roy DJ, Ghazal P, Allan J, Petrik J. Transfusion Medicine, April 2006; 16(2): 119-129 Primary metabolic pathways and signal transduction in sunflower ( Helianthus annuus L.): comparison of transcriptional profiling in leaves and immature embryos using cDNA microarrays. Tarek Hewezi, Michel Petitprez and Laurent Gentzbittel Planta, April 2006; 223(5): 948-964. Effects of Ras signaling on gene expression analyzed by customized microrays. Oleg Tchernitsa, Christine Sers, Anita Geflitter, Reinhold Schaefer Methods in Enzymology; Regulators and Effectors of Small GTPases: Ras Family. April 2006; Elsevier Science & Technology Books, v. 407, p. 373-387. Methodologies for High-Throughput Expression Profiling of MicroRNAs. Paz Einat Methods in Molecular Biology, 01 May 2006; 342 (MicroRNA Protocols): 139-157 A universal reference sample derived from clone vector for improved detection of differential gene expression. Rishi L Khan, Gregory E Gonye, Guang Gao, and James S Schwaber BMC Genomics, 5 May 2006; 7: 109. Microarray analysis of differential gene expression in the liver of lean and fat chickens. Emmanuelle Bourneufa, Frédéric Héraulta, Céline Chicaultb, Wilfrid Carréa, Sirine Assafa, Annabelle Monnierc, Stéphanie Mottierb, Sandrine Lagarriguea, Madeleine Douairea, Jean Mosserb, Christian Diot Gene, 10 May 2006; 372: 162-170 Gene expression alterations in brains of mice infected with three strains of scrapie. Pamela J Skinner, Hayet Abbassi, Bruce Chesebro, Richard E Race, Cavan Reilly, and Ashley T Haase BMC Genomics, 16 May 2006; 7: 114 Application of Comparative Phylogenomics To Study the Evolution of Yersinia enterocolitica and To Identify Genetic Differences Relating to Pathogenicity. Sarah L. Howard, Michael Gaunt, Jason Hinds, Adam A. Witney, Richard Stabler, Brendan W. Wren J Bacteriology, May 2006; 188(10): 3645–3653. A cDNA microarray approach to decipher sunflower (Helianthus annuus) responses to the necrotrophic fungus Phoma macdonaldii.

Marion Alignan, Tarek Hewezi, Michel Petitprez, Grégory Dechamp-Guillaume, Laurent Gentzbittel New Phytologist, May 2006; 170(3): 523 - 536 Use of Miniaturized Protein Arrays for Escherichia coli O Serotyping. Muna F. Anjum, James D. Tucker, Katherine A. Sprigings, Martin J. Woodward, and Ralf Ehricht Clin Vaccine Immunology, May 2006; 13(5): 561–567 Total bacterial and species-specific 16S rDNA micro-array quantification of complex samples. Treimo J, Vegarud G, Langsrud T, Marki S, Rudi K. J Appl Microbiology, May 2006; 100(5): 985-998 Method for detecting single nucleotide polymorphisms on polydimensional microarrays. Inventors: Fischer, Dirk; Geistlinger, Jörg European Patent: EP1546394 B1, Publication Date: 12 June 2006; An alternative method to amplify RNA without loss of signal conservation for expression analysis with a proteinase DNA microarray in the ArrayTube® format Susann Schüler, Ingrid Wenz, B Wiederanders, P Slickers, and R Ehricht BMC Genomics, 12 June 2006; 7: 144. Identification and characterisation of human apoptosis inducing proteins using cell-based transfection microarrays and expression analysis. Ella L Palmer, Andrew D Miller and Tom C Freeman BMC Genomics, 12 June 2006; 7: 145 Evaluation of microarray data normalization procedures using spike-in experiments. Patrik Rydén, Henrik Andersson, Mattias Landfors, Linda Näslund, Blanka Hartmanová, Laila Noppa, and Anders Sjöstedt BMC Bioinformatics, 14 June 2006; 7: 300. Nucleic acid arrays. Inventors: Mansoor S. Mohammed and Natasa Dzidic Patent Application Publication NO.: US 2006/0127918 Al; Pub Date: 15 June 2006; Use of DNA Arrays to Identify a Mutation in the Negative Regulator, csrR, Responsible for the High Virulence of a Naturally Occurring Type M3 Group A Streptococcus Clinical Isolate. Tohru Miyoshi, Akiyama, Tadayoshi Ikebe, Haruo Watanabe, Takehiko Uchiyama, Teruo Kirikae and Yoshiaki Kawamura J Infectious Disease, 15 June 2006; 193(12): 1677-1684 Enzyme-amplified protein microarray and a fluidic renewable surface fluorescence immunoassay for botulinum neurotoxin detection using high-affinity recombinant antibodies. Susan M. Varnum, Marvin G. Warner, Brian Dockendorff, Norman C. Anheier Jr., Jianlong Lou, James D. Marks, Leonard A. Smith, Michael J. Feldhaus, Jay W. Grate and Cynthia J. Bruckner-Lea Analytica Chimica Acta, 16 June 2006; 570(2): 137-143 A microarray analysis of gene expression in the free-living stages of the parasitic nematode Strongyloides ratti. Fiona J Thompson, Gary LA Barker, Louise Hughes, Clare P Wilkes, Jane Coghill, and Mark E Viney

BMC Genomics, 19 June 2006; 7: 157 Discovery of a TNF-alpha antagonist using chondroitin sulfate microarrays. Sarah E. Tully, Manish Rawat, and Linda C. Hsieh-Wilson J Am Chem Society, 21 June 2006; 128(24): 7740-7741 Genomic Diversity between Strains of the Same Serotype and Multilocus Sequence Type among Pneumococcal Clinical Isolates. Nuno A. Silva, Jackie McCluskey, Johanna M. C. Jefferies, Jason Hinds, Andrew Smith, Stuart C. Clarke, Tim J. Mitchell, and Gavin K. Paterson Infect Immunity, June 2006; 74(6): 3513–3518 Potential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities Hervé Sanguin, Benoît Remenant, Arnaud Dechesne, Jean Thioulouse, Timothy M. Vogel, Xavier Nesme, Yvan Moënne-Loccoz, and Geneviève L. Grundmann Appl Environ Microbiology, June 2006; 72(6): 4302–4312. Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis. Qiang He, Katherine H. Huang, Zhili He, Eric J. Alm, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, Judy D. Wall, and Jizhong Zhou Appl Environ Microbiology, June 2006; 72(6): 4370–4381. Whole-Genome Transcription Profiling Reveals Genes Up-Regulated by Growth on Fucose in the Human Gut Bacterium “Roseburia inulinivorans” Karen P. Scott, Jennifer C. Martin, Gillian Campbell, Claus-Dieter Mayer, and Harry J. Flint J Bacteriology, June 2006; 188(12): 4340–4349. Amplification of low quantity bacterial RNA for microarray studies: time-course analysis of Leptospirillum ferrooxidans under nitrogen-fixing conditions. Mercedes Moreno-Paz and Víctor Parro Environ Microbiology, June 2006; 8(6): 1064-1073 Transcriptome of a Nitrosomonas europaea Mutant with a Disrupted Nitrite Reductase Gene (nirK). Catherine Mee-Hie Cho, Tingfen Yan, Xueduan Liu, Liyou Wu, Jizhong Zhou, and Lisa Y. Stein Appl Environ Microbiology, June 2006; 72(6): 4450–4454. Oligonucleotide microarrays for studying the effects of Ras signal transduction on the genetic program. Oleg I. Tchernitsa, Christine Sers, Anita Geflitter, Reinhold Schäfer Signal Transduction, June 2006; 6(3): 209 - 218 Identification and characterisation of genes controlling the resistance response to ascochyta blight (Ascochyta rabiei (Pass.) Labrousse) in chickpea (Cicer arietinum L.). Coram, Tristan PhD Thesis, RMIT University, Melbourne, Australia, June 2006; p.1-320 Detection of H pylori antibody profile in serum by protein array.

Feng-Chan Han, Xu-Jun Li, Hong Jiang, Li-Peng Qin, Ding Li, Yan-Hai Guo, Zhi-Guang Liu, Xiao-Jun Yan World J Gastroenterology, 7 July 2006; 12(25): 4044-4048 Signatures of human regulatory T cells: an encounter with old friends and new players. Susanne Pfoertner, Andreas Jeron, Michael Probst-Kepper, Carlos A Guzman, Wiebke Hansen, Astrid M Westendorf, Tanja Toepfer, Andres J Schrader, Anke Franzke, Jan Buer, and Robert Geffers Genome Biology, 12 July 2006; 7(7): R54. Microarray-basierte genotypische Resistenzbestimmung in HIV. Michaela Schanné Ph.D. Thesis, Ruprecht – Karls - Universität Heidelberg, Germany; 21 July 2006; p.1-139. Expression profiles of 4-nonylphenol-exposed medaka (Oryzias latipes) analyzed with a 3.4 K microarray. Il-Chan Kim, Young-Mi Lee, Chulwoo Lee, Hyun-Mi Kim, Shoji Oda, Yong-Sung Lee, Hiroshi Mitani, and Jae-Seong Lee Marine Environmental Research, July 2006; 62 (Suppl.1): S141-146. Methamphetamine Modulates Gene Expression Patterns in Monocyte Derived Mature Dendritic Cells: Implications for HIV-1 Pathogenesis. Mahajan, Supriya D; Hu, Zihua; Reynolds, Jessica L; Aalinkeel, Ravikumar; Schwartz, Stanley A; Nair, Madhavan P N Molecular Diagnosis & Therapy, July 2006; 10(4): 257-269 DNA-Microarrays zur therapiebegleitenden Prognose bei Brustkrebs. Andreas Horschinek Ph.D. Thesis, der Universität Stuttgart, Germany, 2 August 2006; p. 1-115. Experimental Evaluation of the FluChip Diagnostic Microarray for Influenza Virus Surveillance. Michael B. Townsend, Erica D. Dawson, Martin Mehlmann, James A. Smagala, Daniela M. Dankbar, Chad L. Moore, Catherine B. Smith, Nancy J. Cox, Robert D. Kuchta, and Kathy L. Rowlen J Clin Microbiology, August 2006; 44(8): 2863–2871. Gene expression profiling of human endothelial cells exposed to 50-Hz magnetic fields fails to produce regulated candidate genes. Blair Henderson, Michaela Kind, Guenther Boeck, Arno Helmberg, and Georg Wick Cell Stress Chaperones, August 2006; 11(3): 227–232. Temporal Transcriptomic Analysis as Desulfovibrio vulgaris Hildenborough Transitions into Stationary Phase during Electron Donor Depletion. M. E. Clark, Q. He, Z. He, K. H. Huang, E. J. Alm, X.-F. Wan, T. C. Hazen, A. P. Arkin, J. D. Wall, J.-Z. Zhou, and M. W. Fields Appl Environ Microbiology, August 2006; 72(8): 5578–5588. Microarray analysis of blood microvessels from PDGF-B and PDGF-Rbeta mutant mice identifies novel markers for brain pericytes. Cecilia Bondjers, Liqun He, Minoru Takemoto, Jenny Norlin, Noomi Asker, Mats Hellström, Per Lindahl and Christer Betsholtz FASEB Journal, August 2006; 20(10):1703-1705.

A microarray analysis of the murine macrophage response to infection with Francisella tularensis LVS. Henrik Andersson, Blanka Hartmanová, Patrik Rydén, Laila Noppa, Linda Näslund, Anders Sjöstedt J Med Microbiology, August 2006; 55(8): 1023-33 Gene expression profiling of human endothelial cells exposed to 50-Hz magnetic fields fails to produce regulated candidate genes. Blair Henderson, Michaela Kind, Guenther Boeck, Arno Helmberg and Georg Wick Cell Stress Chaperones, Fall 2006; 11(3): 227-32 Development and validation of a bovine macrophage specific cDNA microarray Kirsty Jensen, Richard Talbot, Edith Paxton, David Waddington, and Elizabeth J Glass BMC Genomics, 1 September 2006; 7: 224 Comparison of chromosomal and array-based comparative genomic hybridization for the detection of genomic imbalances in primary prostate carcinomas. Franclim R Ribeiro, Rui Henrique, Merete Hektoen, Marianne Berg, Carmen Jerónimo, Manuel R Teixeira, and Ragnhild A Lothe Mol Cancer, 4 September 2006; 5: 33. MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies. Paul Honoré, Samuel Granjeaud, Rebecca Tagett, Stéphane Deraco, Emmanuel Beaudoing, Jacques Rougemont, Stéphane Debono, and Pascal Hingamp BMC Genomics, 20 September 2006; 7: 240. Micro array and method for genotyping SHV beta lactamases. Inventors: Verena Grimm; Milorad Susa; Cornelius Knabbe; Rolf D. Schmid; Till T. Bachmann U.S. Patent Application: US 2006/0210999 Al; Publication Date: 21 September 2006 A chip-based miniaturized format for protein-expression profiling: the exploitation of comprehensively produced antibodies. Hisashi Koga, Motoki Kyo, Kazue Usui-Aoki, Kazuki Inamori Electrophoresis, September 2006; 27(18): 3676-3683 Sulfation patterns of glycosaminoglycans encode molecular recognition and activity. Cristal I Gama, Sarah E Tully, Naoki Sotogaku, Peter M Clark, Manish Rawat, Nagarajan Vaidehi, William A Goddard, III, Akinori Nishi & Linda C Hsieh-Wilson Nature Chemical Biology, September 2006; 2(9): 467-473 Detection of Mutations in Genes Associated with Hearing Loss Using a Microarray-Based Approach. Kirby Siemering, Shehnaaz S.M. Manji, Wendy M. Hutchison, Desiree Du Sart, Dean Phelan, and Hans-Henrik M. Dahl J Mol Diagnostics, September 2006; 8(4): 483–489 Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform. Nicole C. Hauser, Rafael Martinez, Anette Jacob, Steffen Rupp, Jörg D. Hoheisel, and Stefan Matysiak

Nucleic Acids Research, 6 October 2006; 34(18): 5101–5111. Transkriptomanalyse von Escherichia coli unter Kohlenhydrat-Limitierung mittels DNA-Microarrays. Karin Lemuth Ph.D. Thesis, Institut für Technische Biochemie der Universität Stuttgart, 12 October 2006; p. 1-245 Transcriptome changes in a colon adenocarcinoma cell line in response to photochemical treatment as used in photochemical internalisation (PCI). Lina Prasmickaite Lina Cekaite, Marit Hellum, Eivind Hovig, Anders Høgset, Kristian Berg FEBS Letters, 16 October 2006; 580(24): 5739-5746 Reliable amplification method for bacterial RNA . Helmy Rachman, Jong Seok Lee, Joerg Angermann, Jane Kowall and Stefan H.E. Kaufmann Journal of Biotechnology, 20 October 2006; 126(1): 61-68 Comparative Phylogenomics of Clostridium difficile Reveals Clade Specificity and Microevolution of Hypervirulent Strains. R. A. Stabler, D. N. Gerding, J. G. Songer, D. Drudy, J. S. Brazier, H. T. Trinh, A. A. Witney, J. Hinds, and B. W. Wren J Bacteriology, October 2006; 188(20): 7297–7305. Expression analysis of immune response genes of Müller cells infected with Toxoplasma gondii. B.C. Knight, S. Kissane, F. Falciani, M. Salmon, M.R. Stanford, G.R. Wallace J Neuroimmunology, October 2006; 179(1-2): 126-131 Comparative Genomics of Host-Specific Virulence in Pseudomonas syringae Sara F. Sarkar, Jeffrey S. Gordon, Gregory B. Martin, and David S. Guttman Genetics, October 2006; 174(2): 1041–1056. Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites George A. Follows, Pawan Dhami, Berthold Göttgens, Alexander W. Bruce, Peter J. Campbell, Shane C. Dillon, Aileen M. Smith, Christoph Koch, Ian J. Donaldson, Mike A. Scott, Ian Dunham, Mary E. Janes, David Vetrie, and Anthony R. Green Genome Research, October 2006; 16(10): 1310–1319 Vacuum casting to manufacture a plastic biochip for highly parallel cell transfection. M Denoual, Y Macé, B Le Pioufle, P Mognol, D Castel and X Gidrol Measurement Science & Technology, 26 October 2006; 17(12): 3134-3140 Self-assembled small-molecule microarrays for protease screening and profiling. Hugo D. Urbina, François Debaene, Bernard Jost, Christine Bole-Feysot, Daniel E. Mason, Petr Kuzmic, Jennifer L. Harris, Nicolas Winssinger ChemBiochem, November 2006; 7(11): 1790-1797 Application of Small Molecule Microarrays in Comparative Chemical Proteomics. Eszter Molnár, László Hackler Jr., Tamás Jankovics, László Ürge, Ferenc Darvas, Liliána Z. Fehér, Zsolt L rincz , György Dormán , László G. Puskás

QSAR & Combinatorial Science, November 2006; 25(11): 1020 - 1026 Dynamics of 17α-ethynylestradiol exposure in rainbow trout (Oncorhynchus mykiss): absorption, tissue distribution, and hepatic gene expression pattern. Ann D. Skillman, James J. Nagler, Sharon E. Hook, Jack A. Small, and Irvin R. Schultz Environ Toxicol Chemistry, November 2006; 25(11): 2997–3005. Medium-Throughput Microarray-Based Approach for Toxicogenomic Profiling of Small Molecules. Laura Vass, Zoltán Kis, Liliána Z. Fehér, Ágnes Zvara, Zsolt L rincz, Ildikó Borbola, Sándor Cseh, Sándor Kulin, László Ürge, György Dormán, László G. Puskás QSAR & Combinatorial Science, November 2006; 25(11): 1039 - 1046 SC2: A Novel Process for Manufacturing Multipurpose High-Density Chemical Microarrays. Antonius Dikmans, Ulrike Beutling, Edelgard Schmeisser, Sabine Thiele, Ronald Frank QSAR & Combinatorial Science, November 2006; 25(11): 1069 - 1080 An in vitro assay to study the transcriptional response during adherence of Candida albicans to different human epithelia. Kai Sohn, Ilknur Senyürek, Jasmin Fertey, Anja Königsdorfer, Christian Joffroy, Nicole Hauser, Gabi Zelt, Herwig Brunner & Steffen Rupp FEMS Yeast Research, November 2006; 6(7): 1085-1093. Transcriptional response of wild-type and ataxia telangiectasia lymphoblasts following exposure to equitoxic doses of ionizing radiation. Eve KLISING-SIREUL, Odile RIGAUD, Katherine ORY, Nicolas UGOLIN, Jérome LEBEAU, Céline LEVALOIS, Bruno LECTARD and Sylvie CHEVILLARD J Radiat Research (Tokyo), November 2006; 47(3-4): 259-272 Small interference RNA targeting heat-shock protein 27 inhibits the growth of prostatic cell lines and induces apoptosis via caspase-3 activation in vitro. Palma Rocchi, Paul Jugpal, Alan So, Shannon Sinneman, Susan Ettinger, Ladan Fazli, Colleen Nelson and Martin Gleave BJU International, November 2006; 98(5): 1082-1089 Etablierung von Home-Made cDNA Microarrays und Untersuchung der Genexpression nach Hochleistungssport. Derek Anthony Gerald Zieker M.D. Thesis, der Eberhard Karls Universität zu Tübingen, Germany, November 2006; p. 1-110. Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression. Iris Brune, Anke Becker, Daniel Paarmann, Andreas Albersmeier, Jörn Kalinowski, Alfred Pühler and Andreas Tauch Journal of Biotechnology, 15 December 2006; 127(1): 21-33 The coccolithovirus microarray: an array of uses. Michael J. Allen and William H. Wilson

Briefings in Functional Genomics and Proteomics, December 2006; 5(4): 273-279 The development of a diagnostic gene chip for detecting five kinds of viruses in horses. Zhu Lai-hua, Liang Cheng-zhu, Lu Cheng-ping, Wu Hua, Yang Yuan-jie, Ma Feng-zhong, Wang Shu-feng, and Yu Hong-guang Chinese Journal of Agricultural Biotechnology, December 2006; 3(3): 209-215 Accurate and reliable high-throughput detection of copy number variation in the human genome. Heike Fiegler, Richard Redon, Dan Andrews, Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk, Lisa French, Paul Hunt, Dimitrios Kalaitzopoulos, James Larkin, Lyndal Montgomery, George H. Perry, Bob W. Plumb, Keith Porter, Rachel E. Rigby, Diane Rigler, Armand Valsesia, Cordelia Langford, Sean J. Humphray, Stephen W. Scherer, Charles Lee, Matthew E. Hurles, and Nigel P. Carter Genome Research, December 2006; 16(12): 1566–1574. Differential responses of Coffea arabica L. leaves and roots to chemically induced systemic acquired resistance. Barbara De Nardi, Rene Dreos, Lorenzo Del Terra, Chiara Martellossi, Elisa Asquini, Patrizia Tornincasa, Debora Gasperini, Beniamina Pacchioni, Rajkumar Rathinavelu, Alberto Pallavicini, Giorgio Graziosi Genome, December 2006; 49(12): 1594-1605. Early pathogenic events associated with Sjögren's syndrome (SjS)-like disease of the NOD mouse using microarray analysis. Smruti Y Killedar, Sarah E Eckenrode, Richard A McIndoe, Jin-Xiong She, Cuong Q Nguyen, Ammon B Peck and Seunghee R Cha Lab Invest. December 2006; 86(12): 1243-1260 Transcript profiles of some developmentally important genes detected in bovine oocytes and in vitro-produced blastocysts using RNA amplification and cDNA microarrays. Mamo S, Sargent CA, Affara NA, Tesfaye D, El-Halawany N, Wimmers K, Gilles M, Schellander K, Ponsuksili S. Reprod Domest Animimals, December 2006; 41(6): 527-534. Escherichia coli proteome chips for detecting protein-protein interactions. Yo Oishi, Shuichi Yunomura, Yuko Kawahashi, Nobuhide Doi, Hideaki Takashima, Tomoya Baba, Hirotada Mori, Hiroshi Yanagawa Proteomics, December 2006; 6(24): 6433-6436. A multi-array competitive immunoassay for the detection of broad-range molecular size organic compounds relevant for astrobiology. Patricia Fernández-Calvo, Christian Näke, Luis A. Rivas, Miriam García-Villadangos, Javier Gómez-Elvira and Víctor Parro Planetary and Space Science, December 2006; 54(15): 1612-1621 Technique of microarrays: microarray platforms. Sven de Vos In: Gene expression profiling by microarrays: clinical implications. Wolf-Karsten Hofmann (Ed.), Cambridge University Press, 2006, p.8-26 Entwurf und Verwendung eines Microarrays zur Untersuchung des Genistein-Stimulons bei

Bradyrhizobium japonicum. Sebastian Thieme Ph.D. Thesis, der Technischen Universität Dresden, Dresden, 2006; p. 1-93. Global Gene Expression in Braclyrhizobium japonicum Cultured with Vanllin, Vanillate, 4-Hydroxybenzoate and Protocatechuate. Naofumi Ito, Manabu Itakura, Shima Eda, Kazuhiko Saeki, Hirofumi Oomori, Tadashi Yokoyama, Takakazu Kaneko, Satoshi Tabata, Takuji Ohwada, Shigeyuki Tajima, Toshiki Uchiumi, Eiji Masai, Masataka Tsuda, Hisayuki Mitsui, Kiwamu Minamisawa Microbes and Environment, 2006; 21(4): 240-250 (published 9 January 2007) (MGII) https://www.jstage.jst.go.jp/article/jsme2/21/4/21_4_240/_pdf 2005 Gene expression profiling in follicular lymphoma to assess clinical aggressiveness and to guide the choice of treatment. Annuska M. Glas, Marie José Kersten, Leonie J. M. J. Delahaye, Anke T. Witteveen, Robby E. Kibbelaar, Arno Velds, Lodewyk F. A. Wessels, Peter Joosten, Ron M. Kerkhoven, René Bernards, Johan H. J. M. van Krieken, Philip M. Kluin, Laura J. van't Veer, and Daphne de Jong Blood, 1 January 2005; 105(1): 301-307 ACTIVE SOLID SUPPORT AND METHOD FOR SURFACE IMMOBILIZATION OF COMBINATORIAL COMPOUNDS OR LIBRARIES. Inventors: Darvas, Ferenc; Uerge, Laszlo; Bucsai, Agota; Beres, Mariann; Dorman, Gyoergy; Krajcsi, Peter; Goedoerhazy, Lajos; Bagyi, Istvan; Puskas, Laszlo; Hackler, Laszlo; Zvara, Agnes Patent application: EP1493031 A2; Publication date; 5 January 2005 Quantitative analysis of tumor mitochondrial RNA using microarray. Cheng-BoHan, Xiao-YunMao, YanXin, Shao-ChengWang, Jia-MingMa, Yu-JieZhao World J Gastroenterology, 7 January 2005; 11(1): 36-40 Demonstration of Loss of Heterozygosity by Single-Nucleotide Polymorphism Microarray Analysis and Alterations in Strain Morphology in Candida albicans Strains during Infection. Anja Forche, Georgiana May, and P. T. Magee Eukaryotic Cell, January 2005; 4(1): 156–165. A novel 5q11.2 deletion detected by microarray comparative genomic hybridisation in a child referred as a case of suspected 22q11 deletion syndrome. Prescott K, Woodfine K, Stubbs P, Super M, Kerr B, Palmer R, Carter NP, Scambler P. Hum Genetics, January 2005; 116(1-2): 83-90. Activation of GPR54 promotes cell cycle arrest and apoptosis of human tumor cells through a specific transcriptional program not shared by other Gq-coupled receptors. Jérôme A.J. Becker, Jean-François Mirjolet, Jérôme Bernard, Emmanuel Burgeon, Marie-Jeanne Simons, Gilbert Vassart, Marc Parmentier and Frédérick Libert Biochemical and Biophysical Research Communications, 21 January 2005; 326(3): 677-686

Evaluating concentration estimation errors in ELISA microarray experiments. Don Simone Daly, Amanda M White, Susan M Varnum, Kevin K Anderson, and Richard C Zangar BMC Bioinformatics, 26 January 2005; 6: 17. Diagnosis of HNF-1α mutations on a PNA zip-code microarray by single base extension. Jae Yang Song, Hyun Gyu Park, Sung-Ouk Jung, and JaeChan Park Nucleic Acids Research, 1 February 2005; 33(2): e19. Molecular Classification of Tamoxifen-Resistant Breast Carcinomas by Gene Expression Profiling. Maurice P.H.M. Jansen, John A. Foekens, Iris L. van Staveren, Maaike M. Dirkzwager-Kiel, Kirsten Ritstier, Maxime P. Look, Marion E. Meijer-van Gelder, Anieta M. Sieuwerts, Henk Portengen, Lambert C.J. Dorssers, Jan G.M. Klijn, Els M.J.J. Berns Journal of Clinical Oncology, 1 February 2005; 23(4): 732-740 Array-based mutation detection of BRCA1 using direct probe/target hybridization. Seong-Chun Yim, Hyun Gyu Park, Ho Nam Chang and Dae-Yeon Cho Analytical Biochemistry, 15 February 2005; 337(2): 332-337 Microarray Analysis Confirms the Specificity of a Chlamydomonas reinhardtii Chloroplast RNA Stability Mutant. Brian Erickson, David B. Stern, and David C. Higgs Plant Physiology, February 2005; 137(2): 534–544. DNA microarray-based detection and identification of Chlamydia and Chlamydophila spp. Konrad Sachse, Helmut Hotzel, Peter Slickers, Thomas Ellinger and Ralf Ehricht Molecular and Cellular Probes, February 2005; 19(1): 41-50 Characterization of the Pheromone Response of the Enterococcus faecalis Conjugative Plasmid pCF10: Complete Sequence and Comparative Analysis of the Transcriptional and Phenotypic Responses of pCF10-Containing Cells to Pheromone Induction. Helmut Hirt, Dawn A. Manias, Edward M. Bryan, Joanna R. Klein, Jesper K. Marklund, Jack H. Staddon, Michael L. Paustian, Vivek Kapur, and Gary M. Dunny J Bacteriology, February 2005; 187(3): 1044–1054. Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Forment J, Gadea J, Huerta L, Abizanda L, Agusti J, Alamar S, Alos E, Andres F, Arribas R, Beltran JP, Berbel A, Blazquez MA, Brumos J, Canas LA, Cercos M, Colmenero-Flores JM, Conesa A, Estables B, Gandia M, Garcia-Martinez JL, Gimeno J, Gisbert A, Gomez G, Gonzalez-Candelas L, Granell A, Guerri J, Lafuente MT, Madueno F, Marcos JF, Marques MC, Martinez F, Martinez-Godoy MA, Miralles S, Moreno P, Navarro L, Pallas V, Perez-Amador MA, Perez-Valle J, Pons C, Rodrigo I, Rodriguez PL, Royo C, Serrano R, Soler G, Tadeo F, Talon M, Terol J, Trenor M, Vaello L, Vicente O, Vidal Ch, Zacarias L, Conejero V. Plant Mol Biology, February 2005; 57(3): 375-391 A microarray configuration to quantify expression levels and relative abundance of splice variants. Pascale Fehlbaum, Caroline Guihal, Laurent Bracco, and Olivier Cochet Nucleic Acids Research, 10 March 2005; 33(5): e47.

Gene Expression Profiling Identifies Molecular Subtypes of Inflammatory Breast Cancer. François Bertucci, Pascal Finetti, Jacques Rougemont, Emmanuelle Charafe-Jauffret, Nathalie Cervera, Carole Tarpin, Catherine Nguyen, Luc Xerri, Rémi Houlgatte, Jocelyne Jacquemier, Patrice Viens and Daniel Birnbaum Cancer Research, 15 March 2005; 65(6): 2170-2178 Database of mRNA gene expression profiles of multiple human organs. Chang Gue Son, Sven Bilke, Sean Davis, Braden T. Greer, Jun S. Wei, Craig C. Whiteford, Qing-Rong Chen, Nicola Cenacchi, and Javed Khan Genome Research, March 2005; 15(3): 443–450 The transcriptional response of Dictyostelium cells to cellular stress. Ludwig Eichinger Zellbiologie aktuell, March 2005, 3: 19-22 A comprehensive survey of the genes involved in maturation and development of the rainbow trout ovary. Kristian R. von Schalburg, Matthew L. Rise, Gordon D. Brown, William S. Davidson, Ben F. Koop Biol Reproduction, March 2005; 72(3): 687-699 Identification of Differentially Expressed Genes in Individual Bovine Preimplantation Embryos Produced by Nuclear Transfer: Improper Reprogramming of Genes Required for Development. Martha Pfister-Genskow, Cena Myers, Lynette A. Childs, Jenine C. Lacson, Thomas Patterson, Jeffery M. Betthauser, Paul J. Goueleke, Richard W. Koppang, Gail Lange, Patricia Fisher, Steven R. Watt, Erik J. Forsberg, Ying Zheng, Gregory H. Leno, Richard M. Schultz, Bing Liu, Chiranjeet Chetia, Xiao Yang, Ina Hoeschele, and Kenneth J. Eilertsen Biology of Reproduction, March 2005; 72(3): 546-555 Gene expression profile analysis of lymphocytes from Alzheimer's patients. Kálmán, J.; Kitajka, K.; Pákáski, M.; Zvara, Á.; Juhász, A.; Vincze, G.; Janka, Z.; Puskás, L. G. Psychiatric Genetics, March 2005; 15(1): 1-6 Comparison of gene expression in trap cells and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum. Dag Ahrén, Margareta Tholander, Csaba Fekete, Balaji Rajashekar, Eva Friman, Tomas Johansson and Anders Tunlid Microbiology, March 2005; 151(3): 789-803 Comprehensive DNA Copy Number Profiling of Meningioma Using a Chromosome 1 Tiling Path Microarray Identifies Novel Candidate Tumor Suppressor Loci. Patrick G. Buckley, Caroline Jarbo, Uwe Menzel, Tiit Mathiesen, Carol Scott, Simon G. Gregory, Cordelia F. Langford and Jan P. Dumanski Cancer Research; 1 April 2005; 65(7): 2653-2661. Selective enzymatic cleavage of gold nanoparticle-labelled DNA on a microarray. Wang, Z. Lee, J. Cossins, A. Brust, M. Nanobiotechnology, IEE Proceedings, 8 April 2005; 152(2): 85- 88 Identification and validation of novel ERBB2 (HER2, NEU) targets including genes involved in angiogenesis.

Johannes Beckers, Felix Herrmann, Sandra Rieger, Alexei L. Drobyshev, Marion Horsch, Martin Hrabé de Angelis, Barbara Seliger International Journal of Cancer, 20 April 2005; 114(4): 590-597 Long oligonucleotide microarrays in wheat: evaluation of hybridization signal amplification and an oligonucleotide-design computer script. Daniel Z. Skinner, Patricia A. Okubara, Kwang-Hyun Baek and Douglas R. Call Functional & Integrative Genomics, April 2005, 5(2): 70-79 Comparative Genomic Hybridizations Reveal Genetic Regions within the Mycobacterium avium Complex That Are Divergent from Mycobacterium avium subsp. paratuberculosis Isolates. Michael L. Paustian, Vivek Kapur, and John P. Bannantine J Bacteriology, April 2005, 187(7): 2406–2415. EDGE: A Centralized Resource for the Comparison, Analysis, and Distribution of Toxicogenomic Information. Kevin R. Hayes, Aaron L. Vollrath, Gina M. Zastrow, Brian J. McMillan, Mark Craven, Stevan Jovanovich, David R. Rank, Sharon Penn, Jacqueline A. Walisser, Janardan K. Reddy, Russell S. Thomas, and Christopher A. Bradfield Molecular Pharmacology, April 2005; 67(4): 1360-1368 Platform influence on DNA microarray data in postmortem brain research. Deborah Hollingshead, David A. Lewis and Károly Mirnics Neurobiol Disease, April 2005; 18(3):649-55 Identification of Chinese cabbage genes up-regulated by prolonged cold by using microarray analysis. Kyung Ae Yang, Chan Ju Lim, Joon Ki Hong, Zheng Lu Jin, Jong Chan Hong, Dae-Jin Yun, Woo Sik Chung, Sang Yeol Lee, Moo Je Cho and Chae Oh Lim Plant Science, April 2005; 168(4): 959-966. Overlaps in the Transcriptional Profiles of Medicago truncatula Roots Inoculated with Two Different Glomus Fungi Provide Insights into the Genetic Program Activated during Arbuscular Mycorrhiza. Natalija Hohnjec, Martin F. Vieweg, Alfred Pühler, Anke Becker, and Helge Küster Plant Physiology, April 2005; 137(4): 1283–1301 Gene-expression Profiling in a Patient with Esophageal Squamous Cell Carcinoma. Nan-Yung Hsu, I-Ping Chiang, Chih-Shiung Shih, Pin-Ru Chen, Heng-Chien Ho Mid Taiwan J Medicine, Spring 2005; 10(1): 43-48 A novel approach to protein expression profiling using antibody microarrays combined with surface plasmon resonance technology. Kazue Usui-Aoki, Kiyo Shimada, Mihoko Nagano, Makoto Kawai, Hisashi Koga Proteomics, May 2005; 5(9): 2396 – 2401 Exon Array CGH: Detection of Copy-Number Changes at the Resolution of Individual Exons in the Human Genome. Pawandeep Dhami, Alison J. Coffey, Stephen Abbs, Joris R. Vermeesch, Jan P. Dumanski, Karen J. Woodward, Robert M. Andrews, Cordelia Langford, and David Vetrie

Am J Hum Genetics, May 2005; 76(5): 750–762. Microarray-Based Detection of 90 Antibiotic Resistance Genes of Gram-Positive Bacteria. Vincent Perreten, Lorianne Vorlet-Fawer, Peter Slickers, Ralf Ehricht, Peter Kuhnert, Joachim Frey J Clin Microbiology, May 2005; 43(5): 2291–2302 BAC-based PCR fragment microarray: high-resolution detection of chromosomal deletion and duplication breakpoints. Hua Ren, Wendy Francis, Amber Boys, Anderly C. Chueh, Nick Wong, Phung La, Lee H. Wong, Jacinta Ryan, Howard R. Slater, K.H. Andy Choo Human Mutation, May 2005; 25(5): 476-482 CDNA CHIP FOR SCREENING SPECIFIC GENES AND ANALYZING THEIR FUNCTION IN SWINE. Inventors: Chul-Wook Kim, Jung-Sou Yeo, Jung-Gyu Lee, Young-Min Song, Kwang-Keun Cho, Ki-Hwa Chung,; Il-Suk Kim, Sang-Keun Jin, Su-Hyun Park, Ji-Won Jung, Min-Jung Lee, Eun-Jung Kwon, Eun-Segk Cho, Hwok-Rai Cho, Sun-Min Shin, Hee-Sun Nam, Yeon-Hee Hong; Sung-Kwang Hong, Yang-Su Kang, Young-Joo Ha, Jeong-Man Rou, Suk-Chun Kwack, In-Ho Choi, Byeong-Woo Kim U.S. Patent Application Publication: US 2005/0112602 Al; Pub. Date: 26 May 2005 Activation of an energy providing response in human keratinocytes after gamma irradiation. Jérôme Lamartine, Noreli Franco, Pascale Le Minter, Pascal Soularue, Olivier Alibert, Jean-Jacques Leplat, Xavier Gidrol, Gilles Waksman, Michèle T. Martin J Cell Biochemistry, 1 June 2005; 95(3): 620-631 Development of a Lectin Microarray for the Rapid Analysis of Protein Glycopatterns Kanoelani T. Pilobello, Lakshmipriya Krishnamoorthy, Deepika Slawek and Lara K. Mahal ChemBiochem, 6 June 2005; 6(6): 985-989 (MG 600) Characterization and Optimization of PDMS Microfluidic Devices for Rapid DNA Hybridization. Jenny Hu B.S. Thesis, Massachusetts Institute of Technology, 08 June 2005, pp. 1-60 Genomic analysis of heat-shock factor targets in Drosophila. Ian Birch-Machin, Shan Gao, David Huen, Richard McGirr, Robert AH White, and Steven Russell Genome Biology, 10 June 2005; 6(7): R63. Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues. T. Mijalski, A. Harder, T. Halder, M. Kersten, M. Horsch, T. M. Strom, H. V. Liebscher, F. Lottspeich, M. Hrabě de Angelis, and J. Beckers Proc Natl Acad Sci U S A, 14 June 2005; 102(24): 8621–8626. Early detection of breast cancer based on gene-expression patterns in peripheral blood cells. Praveen Sharma, Narinder S Sahni, Robert Tibshirani, Per Skaane, Petter Urdal, Hege Berghagen, Marianne Jensen, Lena Kristiansen, Cecilie Moen, Pradeep Sharma, Alia Zaka, Jarle Arnes, Torill Sauer, Lars A Akslen, Ellen Schlichting, Anne-Lise Børresen-Dale, and Anders Lönneborg Breast Cancer Research, 14 June 2005; 7(5): R634–R644.

Molecular characterization of rat gastric mucosal response to potent acid inhibition. Kristin G. Nørsett, Astrid Lægreid, Mette Langaas, Sara Wörlund, Reidar Fossmark, Helge L. Waldum and Arne K. Sandvik Physiological Genomics, 16 June 2005; 22(1): 24-32 Identification of germ plasm-enriched mRNAs in Drosophila melanogaster by the cDNA microarray technique. Milán Szuperák, Ágnes Zvara and Miklós Erdélyi Gene Expression Patterns, June 2005; 5(5): 717-723 A novel approach to protein expression profiling using antibody microarrays combined with surface plasmon resonance technology. Kazue Usui-Aoki, Kiyo Shimada, Mihoko Nagano, Makoto Kawai, Hisashi Koga Proteomics, June 2005; 5(9): 2396-401 Timing Is Everything: Preclinical Evidence Supporting Simultaneous Rather Than Sequential Chemohormonal Therapy for Prostate Cancer. Bernhard J.C. Eigl, Scott E. Eggener, Jenny Baybik, Susan Ettinger, Kim N. Chi, Colleen Nelson, Zhou Wang and Martin E. Gleave Clinical Cancer Research, 1 July 2005; 11(13): 4905-4911 Polymorphisms in 16S rRNA genes of Flavobacterium psychrophilum correlate with elastin hydrolysis and tetracycline resistance. Marilyn Soule, Stacey LaFrentz, Kenneth Cain, Scott LaPatra, Douglas R. Call Diseases of Aquatic Organisms, 18 July 2005; 65(3): 209–216 Regulation of M. tuberculosis cell envelope composition and virulence by Regulated Intramembrane Proteolysis. Hideki Makinoshima and Michael S. Glickman Nature, 21 July 2005; 436(7049): 406–409. Phenotypic and Transcriptional Characterization of the Meningococcal PhoPQ System, a Magnesium-Sensing Two-Component Regulatory System That Controls Genes Involved in Remodeling the Meningococcal Cell Surface. J. Newcombe, J. C. Jeynes, E. Mendoza, J. Hinds, G. L. Marsden, R. A. Stabler, M. Marti, and J. J. McFadden J Bacteriology, July 2005; 187(14): 4967–4975. Microarray analysis of gene expression in germinating barley embryos (Hordeum vulgare L.) Loraine Watson and Robert J. Henry Funct. Integr. Genomics, July 2005; 5(3): 155-62 The 'yeast cell wall chip' - a tool to analyse the regulation of cell wall biogenesis in Saccharomyces cerevisiae. Jose M. Rodríguez-Peña, Rosa M. Pérez-Díaz, Sara Alvarez, Clara Bermejo, Raúl García, Catalina Santiago, César Nombela and Javier Arroyo Microbiology, July 2005; 151(7): 2241-2249 Design of improved membrane protein production experiments: Quantitation of the host response.

Nicklas Bonander, Kristina Hedfalk, Christer Larsson, Petter Mostad, Celia Chang, Lena Gustafsson, and Roslyn M. Bill Protein Science, July 2005; 14(7): 1729–1740. Reliable low-density DNA array based on allele-specific probes for detection of 118 mutations causing familial hypercholesterolemia. Diego Tejedor, Sergio Castillo, Pilar Mozas, Elisa Jiménez, Mónica López, M. Teresa Tejedor, Marta Artieda, Rodrigo Alonso, Pedro Mata, Laureano Simón, Antonio Martínez, Miguel Pocoví and the Spanish FH Group. Clinical Chemistry, July 2005; 51(7): 1137-1144 Detection and delineation of an unusual 17p11.2 deletion by array-CGH and refinement of the Smith-Magenis syndrome minimum deletion to approximately 650 kb. Jacqueline Schoumans, Johan Staaf, Göran Jönsson, Johanna Rantala, Kerstin Sars Zimmer, Åke Borg, Magnus Nordenskjöld and Britt-Marie Anderlid Eur J Med Genetics, July-September 2005; 48(3): 290-300 Comprehensive analysis of differential gene expression profiles on carbon tetrachloride-induced rat liver injury and regeneration. Heekyoung Chung, Doo-Pyo Hong, Ji-Youn Jung, Hyun-Jun Kim, Ki-Seok Jang, Yhun-Yhong Sheen, Joon-Ik Ahn, Yong-Sung Lee and Gu Kong Toxicology and Applied Pharmacology, 1 August 2005; Pages 206(1): 27-42 Knowledge Discovery of Different Relationship Among Akt, p70S6 and ERK under Different Functions by Phospho-Antibody Microarray. Lin Wang, Minghu Jiang, Stefan Wolfl International Journal of Information Technology, August 2005; 11(8): 90-99 Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana. Alexander H. J. Wittenberg, Theo van der Lee, Cyril Cayla, Andrzej Kilian, Richard G. F. Visser and Henk J. Schouten Mol Genet Genomics, August 2005; 274(1): 30-39 EFFECTS OF PROBE LENGTH AND SECONDARY STRUCTURE ON DNA MICROARRAY HYBRIDIZATIONS: IMPLICATIONS FOR DESIGN OF PATHOGEN DETECTION ASSAYS. Jennifer Leader Elmose, Samantha Lane, Douglas Call The McNair Journal, Fall 2005, 3: 68-80 Distinct Genomic Profiles in Hereditary Breast Tumors Identified by Array-Based Comparative Genomic Hybridization. Göran Jönsson, Tara L. Naylor, Johan Vallon-Christersson, Johan Staaf, Jia Huang, M. Renee Ward, Joel D. Greshock, Lena Luts, Håkan Olsson, Nazneen Rahman, Michael Stratton, Markus Ringnér, Åke Borg and Barbara L. Weber Cancer Research, 1 September 2005; 65(17): 7612-7621 Identification of novel stage-specific genetic requirements through whole genome transcription profiling of Vibrio cholerae biofilm development. Sudha Moorthy and Paula I. Watnick Mol Microbiology, September 2005; 57(6): 1623–1635.

Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains Stefano Campanaro, Alessandro Vezzi, Nicola Vitulo, Federico M Lauro, Michela D'Angelo, Francesca Simonato, Alessandro Cestaro, Giorgio Malacrida, Giulio Bertoloni, Giorgio Valle, and Douglas H Bartlett BMC Genomics, 14 September 2005; 6: 122. Fish and chips: Various methodologies demonstrate utility of a 16,006-gene salmonid microarray. Kristian R von Schalburg, Matthew L Rise, Glenn A Cooper, Gordon D Brown, A Ross Gibbs, Colleen C Nelson, William S Davidson, and Ben F Koop BMC Genomics, 15 September 2005; 6: 126 Construction and validation of a Bovine Innate Immune Microarray. Laurelea Donaldson, Tony Vuocolo, Christian Gray, Ylva Strandberg, Antonio Reverter, Sean McWilliam, YongHong Wang, Keren Byrne, and Ross Tellam BMC Genomics, 22 September 2005; 6: 135. Markedly different gene expression in wheat grown with organic or inorganic fertilizer. Chungui Lu, Malcolm J Hawkesford, Peter B Barraclough, Paul R Poulton, Ian D Wilson, Gary L Barker, and Keith J Edwards Proceedings of the Royal Society, Ser. B: Biol Sciences, 22 September 2005; 272(1575): 1901–1908 Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species. Richard A. Stabler, Gemma L. Marsden , Adam A. Witney, Yanwen Li, Stephen D. Bentley, Christoph M. Tang and Jason Hinds Microbiology, September 2005; 151(9): 2907-22 Impact of haloperidol and risperidone on gene expression profile in the rat cortex. Liliána Z. Fehér, János Kálmán, László G. Puskás, Gábor Gyülvészi, Klára Kitajka, Botond Penke, Miklós Palotás, Elena I. Samarova, József Molnár, Ágnes Zvara, Keyvan Matin, Nikoletta Bódi, Marietta Hugyecz, Magdolna Pákáski, Annamária Bjelik, Anna Juhász, Gábor Bogáts, Zoltán Janka and András Palotás Neurochemistry International, September 2005; 47(4): 271-280 Gene expression analysis of Escherichia coli grown in miniaturized bioreactor platforms for high-throughput analysis of growth and genomic data. Paolo Boccazzi, Andrea Zanzotto, Nicolas Szita, Sanchita Bhattacharya, Klavs F. Jensen and Anthony J. Sinskey Applied Microbiology and Biotechnology, September 2005; 68(4): 518-532 MICROARRAYS AND MICROSPHERES COMPRISING OLIGOSACCHARIDES, COMPLEX CARBOHYDRATES OR GLYCOPROTEINS. Inventors: Peter H. Seeberger, Daniel M. Ratner, Eddie W. Adams US Patent Application: US 2005/0221337 A1; Pub. Date: 6 October 2005 Gain and Loss of Multiple Genes During the Evolution of Helicobacter pylori. Helga Gressmann, Bodo Linz, Rohit Ghai, Klaus-Peter Pleissner, Ralph Schlapbach, Yoshio Yamaoka, Christian Kraft, Sebastian Suerbaum, Thomas F Meyer, and Mark Achtman PLoS Genetics, 7 October 2005; 1(4): e43.

VirA and VirG activate the Ti plasmid repABC operon, elevating plasmid copy number in response to wound-released chemical signals. Hongbaek Cho and Stephen C. Winans Proc Natl Acad Sci U S A, 11 October 2005; 102(41): 14843–14848. No common denominator for breast cancer lymph node metastasis. Weigelt B, Wessels LF, Bosma AJ, Glas AM, Nuyten DS, He YD, Dai H, Peterse JL, van't Veer LJ British Journal of Cancer, 17 October 2005; 93(8): 924-932 Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations Lei Zhang, Thomas Hurek, and Barbara Reinhold-Hurek Nucleic Acids Research, 27 October 2005; 33(19): e166. Development of a DNA Microarray for Detection and Identification of Fungal Pathogens Involved in Invasive Mycoses. Dirk M. Leinberger, Ulrike Schumacher, Ingo B. Autenrieth, and Till T. Bachmann J Clin Microbiology, October 2005; 43(10): 4943–4953. Development of a multipathogen oligonucleotide microarray for detection of Bacillus anthracis. Jane E. Burton, O. James Oshota, Emma North, Michael J. Hudson, Natasha Polyanskaya, John Brehm, Graham Lloyd and Nigel J. Silman Molecular and Cellular Probes, October 2005; 19(5): 349-357 Construction and screening of subtracted cDNA libraries from limited populations of plant cells: a comparative analysis of gene expression between maize egg cells and central cells. Le, Quyen; Gutierrez-Marcos, Jose F.; Costa, Liliana M.; Meyer, Stephanie; Dickinson, Hugh G.; Lorz, Horst; Kranz, Erhard; Scholten, Stefan Plant Journal, October 2005; 44(1): 167-178. Mapping and characterization of the amplicon near APOA2 in 1q23 in human sarcomas by FISH and array CGH Stine H Kresse, Jeanne-Marie Berner, Leonardo A Meza-Zepeda, Simon G Gregory, Wen-Lin Kuo, Joe W Gray, Anne Forus, and Ola Myklebost Mol Cancer, 7 November 2005; 4: 39. cDNA microarray analysis reveals novel candidate genes expressed in human peripheral blood following exhaustive exercise. Derek Zieker, Elvira Fehrenbach, Janko Dietzsch, Judith Fliegner, Marc Waidmann, Kay Nieselt, Peter Gebicke-Haerter, Rainer Spanagel, Perikles Simon, Andreas Michael Niess and Hinnak Northoff Physiol Genomics, 17 November 2005; 23(3): 287-294 Design, Validation, and Application of a Seven-Strain Staphylococcus aureus PCR Product Microarray for Comparative Genomics Adam A. Witney, Gemma L. Marsden, Matthew T. G. Holden, Richard A. Stabler, Sarah E. Husain, J. Keith Vass, Philip D. Butcher, Jason Hinds, and Jodi A. Lindsay Appl Environ Microbiology, November 2005; 71(11): 7504–7514.

NspS, a Predicted Polyamine Sensor, Mediates Activation of Vibrio cholerae Biofilm Formation by Norspermidine. Ece Karatan, Tammi R. Duncan, and Paula I. Watnick J Bacteriolgy, November 2005; 187(21): 7434–7443. High throughput production of mouse monoclonal antibodies using antigen microarrays. Federico De Masi, Pieranna Chiarella, Heike Wilhelm, Marzia Massimi, Belinda Bullard, Wilhelm Ansorge and Alan Sawyer Proteomics, November 2005; 5(16): 4070-4081 Functional Genomic Analysis of Three Nitrogenase Isozymes in the Photosynthetic Bacterium Rhodopseudomonas palustris. Yasuhiro Oda, Sudip K. Samanta, Federico E. Rey, Liyou Wu, Xiudan Liu, Tingfen Yan, Jizhong Zhou, and Caroline S. Harwood J Bacteriology, November 2005; 187(22): 7784–7794. Impact of venlafaxine on gene expression profile in lymphocytes of the elderly with major depression--evolution of antidepressants and the role of the "neuro-immune" system. János Kálmán, András Palotás, Anna Juhász, Ágnes Rimanóczy, Marietta Hugyecz, Zsuzsa Kovács, Gabriella Galsi, Zoltán Szabó, Magdolna Pákáski, Liliána Z. Fehér, Zoltán Janka and László G. Puskás Neurochem Research, November 2005; 30(11): 1429-1438 Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis. Jammes, Fabien; Lecomte, Philippe; de Almeida-Engler, Janice; Bitton, Frederique; Martin-Magniette, Marie-Laure; Renou, Jean Pierre; Abad, Pierre; Favery, Bruno Plant Journal, November 2005; 44(3):447-458. Identification of autoantibody clusters that best predict lupus disease activity using glomerular proteome arrays. Quan Li Zhen, Chun Xie, Tianfu Wu, Meggan Mackay, Cynthia Aranow, Chaim Putterman, and Chandra Mohan J Clinical Investigation, 2005 December 1; 115(12): 3428–3439 Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius. Maria Yolanda Covarrubias, Rishi L. Khan, Rajanikanth Vadigepalli, Jan B. Hoek and James S. Schwaber Physiological Genomics, 14 December 2005; 24(1): 45-58 Optimization of fragmentation conditions for microarray analysis of viral RNA. Martin Mehlmanna, Michael B. Townsenda, Robin L. Stearsb, Robert D. Kuchtaa, Kathy L. Rowlen Analytical Biochemistry, 15 December 2005; 347(2): 316-323 Construction of a 2-Mb resolution BAC microarray for CGH analysis of canine tumors Rachael Thomas, Allyson Scott, Cordelia F. Langford, Susan P. Fosmire, Cristan M. Jubala, Travis D. Lorentzen, Christophe Hitte, Elinor K. Karlsson, Ewen Kirkness, Elaine A. Ostrander, Francis Galibert, Kerstin Lindblad-Toh, Jaime F. Modiano, and Matthew Breen Genome Research, December 2005; 15(12): 1831–1837.

Alterations of renal phenotype and gene expression profiles due to protein overload in NOD-related mouse strains. Karen HS Wilson, Richard A McIndoe, Sarah Eckenrode, Laurence Morel, Anupam Agarwal, Byron P Croker, and Jin-Xiong She BMC Nephrology, 21 December 2005; 6: 17. HIGH CAPACITY MICROARRAY DISPENSING. Inventors: Brian L. Ganz; Mandel W. Mickley, John Andrew Moulds, Chritopher T. Brovold United States Patent: US 6,979,425 Bl (45); Date of Patent Issue: 27 December 2005 Use of a rainbow trout oligonucleotide microarray to determine transcriptional patterns in aflatoxin B1-induced hepatocellular carcinoma compared to adjacent liver. Susan C. Tilton, Lena G. Gerwick, Jerry D. Hendricks, Caprice S. Rosato, Graham Corley-Smith, Scott A. Givan, George S. Bailey, Christopher J. Bayne and David E. Williams Toxicological Sciences, December 2005; 88(2): 319-30. Identification of Dll1 (Delta1) target genes during mouse embryogenesis using differential expression profiling. C. Machka, M. Kersten, M. Zobawa, A. Harder, M. Horsch, T. Halder, F. Lottspeich, M. Hrabé de Angelis and J. Beckers Gene Expression Patterns, December 2005; 6(1): 94-101 Genomic Technical Note: Microarrays-Solutions to the Protein Challenge. BioTechniques, 2005 Analyzing proteins and protein modifications with ArrayTube antibody microarrays. Stefan Wolfl, Annegret Dummer, Larissa Pusch, Marina Pfalz, Lin Wang, Joachim H. Clement, Ines Leube, Ralf Ehricht In: Protein microarrays, Mark Schena (Ed.), Jones & Bartlett Publishers, 2005, p.159-168 2004 Prion Protein Prevents Human Breast Carcinoma Cell Line from Tumor Necrosis Factor -Induced Cell Death. Maryam Diarra-Mehrpour, Samuel Arrabal, Abdelali Jalil, Xavier Pinson, Catherine Gaudin, Geneviève Piétu, Amandine Pitaval, Hugues Ripoche, Marc Eloit, Dominique Dormont and Salem Chouaib Cancer Research, 15 January 2004; 64(2): 719-727 Comprehensive transcriptome analysis of differentiation of embryonic stem cells into midbrain and hindbrain neurons. Joon-Ik Ahn, Ki-Hwan Lee, Dong-Mi Shin, Jae-Won Shim, Jae-Seong Lee, Sung Yeoul Chang, Young-Seek Lee, Michael J. Brownstein, Sang-Hun Lee and Yong-Sung Lee Developmental Biology, 15 January 2004; 265(2): 491-501 A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization.

Yeun-Jun Chung, Jos Jonkers, Hannah Kitson, Heike Fiegler, Sean Humphray, Carol Scott, Sarah Hunt, Yuejin Yu, Ichiko Nishijima, Arno Velds, Henne Holstege, Nigel Carter, and Allan Bradley Genome Research, January 2004; 14(1): 188–196 Suppression subtractive hybridization coupled with microarray analysis to examine differential expression of genes in virus infected cells. Shirin Munir, Sushmita Singh, Kuljeet Kaur and Vivek Kapur Biol Proced Online, January 2004; 6(1): 94-104 An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome M Hild, B Beckmann, SA Haas, B Koch, V Solovyev, C Busold, K Fellenberg, M Boutros, M Vingron, F Sauer, JD Hoheisel, and R Paro Genome Biology, January 2004; 5(1): R3. African Swine Fever Virus Multigene Family 360 and 530 Genes Affect Host Interferon Response. C. L. Afonso, M. E. Piccone, K. M. Zaffuto, J. Neilan, G. F. Kutish, Z. Lu, C. A. Balinsky, T. R. Gibb, T. J. Bean, L. Zsak, and D. L. Rock J Virology, February 2004; 78(4): 1858–1864. Gene Expression Profiles Define a Key Checkpoint for Type 1 Diabetes in NOD Mice. Sarah E. Eckenrode, Qingguo Ruan, Ping Yang, Weipeng Zheng, Richard A. McIndoe and Jin-Xiong She Diabetes, February 2004; 53(2): 366-375 Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula. Helge Küster, Natalija Hohnjec, Franziska Krajinski, Fikri El Yahyaoui, Katja Manthey, Jérome Gouzy, Michael Dondrup, Folker Meyer, Jörn Kalinowski, Laurent Brechenmacher, Diederik van Tuinen, Vivienne Gianinazzi-Pearson, Alfred Pühler, Pascal Gamas, Anke Becker Journal of Biotechnology, 4 March 2004; 108(2): 95–113. Probing Protein - Carbohydrate Interactions with Microarrays of Synthetic Oligosaccharides. Daniel M. Ratner, EddieW. Adams,Jing Su, Barry R. O'Keefe, Milan Mrksich, Peter H. Seeberger ChemBioChem, 5 March 2004; 5(3): 379 - 383 Evidence for a resident subset of cells with SP phenotype in the C2C12 myogenic line: a tool to explore muscle stem cell biology. Rachid Benchaouir, Philippe Rameau, Charles Decraene, Patrick Dreyfus, David Israeli, Geneviève Piétu, Olivier Danos and Luis Garcia Experimental Cell Research, 10 March 2004; 294(1): 254-268 High-resolution analysis of genomic copy number alterations in bladder cancer by microarray-based comparative genomic hybridization. Carolyn D Hurst, Heike Fiegler, Philippa Carr, Sarah Williams, Nigel P Carter, Margaret A Knowles Oncogene, 18 March 2004; 23(12): 2250-2263 Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics. Matthew L. Rise, Kristian R. von Schalburg, Gordon D. Brown, Melanie A. Mawer, Robert H. Devlin, Nathanael Kuipers, Maura Busby, Marianne Beetz-Sargent, Roberto Alberto, A. Ross Gibbs, Peter Hunt,

Robert Shukin, Jeffrey A. Zeznik, Colleen Nelson, Simon R.M. Jones, Duane E. Smailus, Steven J. M. Jones, Jacqueline E. Schein, Marco A. Marra, Yaron S.N. Butterfield, Jeff M. Stott, Siemon H.S. Ng, William S. Davidson, and Ben F. Koop Genome Research, March 2004; 14(3): 478–490. Global changes in gene expression in Sinorhizobium meliloti 1021 under microoxic and symbiotic conditions. Anke Becker, Hélène Bergès, Elizaveta Krol, Claude Bruand, Silvia Rüberg, Delphine Capela, Emmanuelle Lauber, Eliane Meilhoc, Frédéric Ampe, Frans J. de Bruijn, Joëlle Fourment, Anne Francez-Charlot, Daniel Kahn, Helge Küster, Carine Liebe, Alfred Pühler, Stefan Weidner, and Jacques Batut Mol Plant Microbe Interaction, March 2004; 17(3): 292-303 In-Depth Profiling of Lysine-Producing Corynebacterium glutamicum by Combined Analysis of the Transcriptome, Metabolome, and Fluxome. Jens Olaf Krömer, Oliver Sorgenfrei, Kai Klopprogge, Elmar Heinzle, and Christoph Wittmann J Bacteriology, March 2004; 186(6): 1769–1784. Microarray analysis of chromatin-immunoprecipitated DNA identifies specific regions of tobacco genes associated with acetylated histones. Chua, Yii Leng; Mott, Ellie; Brown, Anthony P. C.; MacLean, Daniel; Gray, John C. Plant Journal, March 2004; 37(6): 789-800. Cholesterol diet-induced hyperlipidemia influences gene expression pattern of rat hearts: a DNA microarray study. László G. Puskása, Zsolt B. Nagya, Zoltán Giriczb, Annamária Ónodyb, Csaba Csonkab, Klára Kitajkac, László Hackler Jr.a, Ágnes Zvaraa, Péter Ferdinandyb FEBS Letters, 26 March 2004; 562(1): 99-104. Transcript identification and profiling during salt stress and recovery of Populus euphratica. Ruisheng Gu, Sandra Fonseca, László G. Puskás, László Hackler, Jr., Ágnes Zvara, Dénes Dudits and Maria S. Pais Tree Physiology, March 2004; 24(3): 265-276 MICROARRAY DISPENSING WITH REAL-TIME VERIFICATION AND INSPECTION. Inventors: Brian L. Ganz; Mandel W. Mickley; John Andrew Moulds; Christopher T. Brovold. Patent Application Publication # US 2004/0062686 Al; Pub. Date: 1 April 2004 Identification and validation of an ERBB2 gene expression signature in breast cancers. François Bertucci, Nathalie Borie, Christophe Ginestier, Agnès Groulet, Emmanuelle Charafe-Jauffret, José Adélaïde, Jeannine Geneix, Loïc Bachelart, Pascal Finetti, Alane Koki, Fabienne Hermitte, Jacques Hassoun, Stéphane Debono, Patrice Viens, Vincent Fert, Jocelyne Jacquemier, Daniel Birnbaum Oncogene, 1 April 2004; 23(14): 2564-2575 Small lymphocytic lymphoma, marginal zone B-cell lymphoma, and mantle cell lymphoma exhibit distinct gene-expression profiles allowing molecular diagnosis. Catherine Thieblemont, Valéry Nasser, Pascale Felman, Karen Leroy, Sophie Gazzo, Evelyne Callet-Bauchu, Béatrice Loriod, Samuel Granjeaud, Philippe Gaulard, Corinne Haioun, Alexandra Traverse-Glehen, Lucile Baseggio, François Bertucci, Daniel Birnbaum, Florence Magrangeas, Stéphane Minvielle, Hervé Avet-Loiseau, Gilles Salles, Bertrand Coiffier, Françoise Berger, and Rémi Houlgatte

Blood, 1 April 2004; 103(7): 2727-2737. Simultaneous Detection of Marine Fish Pathogens by Using Multiplex PCR and a DNA Microarray Santiago F. González, Melissa J. Krug, Michael E. Nielsen, Ysabel Santos, and Douglas R. Call J Clin Microbiology, April 2004; 42(4): 1414–1419. High-throughput mutation screening. Paal Scytt Andersen, Lars Allan Larsen In: Molecular Analysis and Genome Discovery, Ralph Rapley, Stuart Harbron (Eds), Wiley, John & Sons, Inc., April 2004; p.71-100 POLYNUCLEOTIDE MICROARRAY, APPARATUS FOR THE CONSTRUCTION AND POLYNUCLEOTIDE MICROARRAY. Inventor: Shinya Watanabe Patent Application Publication NO.: US 2004/0091867 Al; Pub. Date: 13 May 2004 Fabrication of high quality cDNA microarray using a small amount of cDNA. Park CH, Jeong HJ, Jung JJ, Lee GY, Kim SC, Kim TS, Yang SH, Chung HC, Rha SY. Int J Mol Medicine, May 2004; 13(5): 675-9. Spotting effect in microarray experiments. Tristan Mary-Huard, Jean-Jacques Daudin, Stéphane Robin, Frédérique Bitton, Eric Cabannes, and Pierre Hilson BMC Bioinformatics, 19 May 2004; 5: 63. Quantitative analysis of highly parallel transfection in cell microarrays. Sandrine Baghdoyan, Yoann Roupioz, Amandine Pitaval, David Castel, Elena Khomyakova, Alexandre Papine, Françoise Soussaline, and Xavier Gidrol Nucleic Acids Research, 21 May 2004; 32(9): e77. Suppression subtractive hybridization coupled with microarray analysis to examine differential expression of genes in virus infected cells. Shirin Munir, Sushmita Singh, Kuljeet Kaur, and Vivek Kapur Biol Proced Online; 26 May 2004; 6: 94–104. Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples. Federica Calevro, Hubert Charles, Nancie Reymond, Vincent Dugas, Jean-Pierre Cloarec, Jacques Bernillon, Yvan Rahbé, Gérard Febvay and Jean-Michel Fayard Journal of Microbiological Methods, May 2004; 57(2): 207-218 Model-based estimation of transcript concentrations from spotted microarray data. Arnoldo Frigessi, Mark A. van de Wiel, Marit Holden, Ingrid K. Glad, Heidi Lyng Norwegian Computing Center/Applied Research and Development, Report, Publication no.: 999 May 2004; p. 1-18 Microarrays for Mycobacterium tuberculosis. Issue Edited by Philip D. Butcher Tuberculosis (Edinb); Summer 2004; 84(3-4): 131-282

Microarray analysis of Mycobacterium microti reveals deletion of genes encoding PE-PPE proteins and ESAT-6 family antigens. M. Carmen Garcia-Pelayoa, Karina C. Caimib, Jacqueline K. Inwalda, Jason Hindsc, Fabiana Bigib, Maria I. Romanob, Dick van Soolingend, R. Glyn Hewinsona, Angel Cataldib, Stephen V. Gordon Tuberculosis (Edinb), Summer 2004; 84(3-4):159-66 Analysis of the function of mycobacterial DnaJ proteins by overexpression and microarray profiling. Graham R Stewart, Brian D Robertson, Douglas B Young Tuberculosis (Edinb), Summer 2004; 84(3-4): 180-187. METHOD, COMPUTER PROGRAM PRODUCT AND SYSTEM FOR MICROARRAY CROSS-HYBRIDISATION DETECTION. Inventors: Johannes Beckers, Martin Hrabe De Angelis, Christine Machka, Matthias Seltmann, Marion Horsch, Volkmar Liebscher U.S. Patent Pub. NO.: US 2004/0110207 Al; Pub. Date: 10 June 2004 Untersuchung der Genexpression von Dictyostelium discoideum nach Infektion mit Legionella mittels DNA-Microarrays. Patrick Farbrother PhD Thesis, University of Koeln, Germany, Hundt Druck GmbH, Köln, 17 June 2004; p.1-118 High-throughput mutation screening. Paal Skytt Andersen, Lars Allan Larsen In: Molecular Analysis and Genome Discovery, Ralph Rapleyand, Stuart Harbron Eds, Wiley, John & Sons, Inc., 25 June 2004; p.71-100 Feature extraction and signal processing for nylon DNA microarrays. F Lopez, J Rougemont, B Loriod, A Bourgeois, L Loï, F Bertucci, P Hingamp, R Houlgatte, and S Granjeaud BMC Genomics, 29 June 2004; 5: 38. Investigation Into the use of C- and N-terminal GFP Fusion Proteins for Subcellular Localization Studies Using Reverse Transfection Microarrays. Ella Palmer and Tom Freeman Comparative & Functional Genomics, 2004 June; 5(4): 342–353 Diversity Arrays Technology (DArT) for whole-genome profiling of barley. Peter Wenzl, Jason Carling, David Kudrna, Damian Jaccoud, Eric Huttner, Andris Kleinhofs, and Andrzej Kilian Proc Natl Acad Sci U S A, 2004 June 29; 101(26): 9915–9920. Microarray Analysis Reveals Characteristic Changes of Host Cell Gene Expression in Response to Attenuated Modified Vaccinia Virus Ankara Infection of Human HeLa Cells. Susana Guerra, Luis A. López-Fernández, Raquel Conde, Alberto Pascual-Montano, Keith Harshman, and Mariano Esteban J Virology, June 2004; 78(11): 5820–5834.

Oligosaccharide and Glycoprotein Microarrays as Tools in HIV Glycobiology: Glycan-Dependent gp120/Protein Interactions. Eddie W. Adams, Daniel M. Ratner, Heidi R. Bokesch, James B. McMahon, Barry R. O’Keefe, and Peter H. Seeberger Chemistry & Biology, June 2004; 11(6): 875–881 Anatomical Methods for Voxelation of the Mammalian Brain. Daniel M. Sforza, Jacopo Annese, Dahai Liu, Shawn Levy, Arthur W. Toga and Desmond J. Smith Neurochemical Research, June 2004; 29(6): 1299-306 Generic expansion of the substrate spectrum of a DNA polymerase by directed evolution. Farid J Ghadessy, Nicola Ramsay, François Boudsocq, David Loakes, Anthony Brown, Shigenori Iwai, Alexandra Vaisman, Roger Woodgate & Philipp Holliger Nature Biotechnology, June 2004; 22(6):755-759 Aminoglycoside Microarrays To Explore Interactions of Antibiotics with RNAs and Proteins. Matthew D. Disney, and Peter H. Seeberger Chemistry, 5 July 2004; 10(13): 3308-3314. Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH. Marine Guillaud-Bataille, Alexander Valent, Pascal Soularue, Christine Perot, Maria-del-Mar Inda, Aline Receveur, Sadek Smaïli, Hugues Roest Crollius, Jean Bénard, Alain Bernheim, Xavier Gidrol, and Gisèle Danglot Nucleic Acids Research, 29 July 204; 32(13): e112. Simultaneous Discrimination between 15 Fish Pathogens by Using 16S Ribosomal DNA PCR and DNA Microarrays. Adelaide E. Warsen, Melissa J. Krug, Stacey LaFrentz, Danielle R. Stanek, Frank J. Loge, and Douglas R. Call Appl Environ Microbiology, July 2004; 70(7): 4216–4221. Expression profiling of the Leishmania life cycle: cDNA arrays identify developmentally regulated genes present but not annotated in the genome. Renata Almeida, Brian J Gilmartin, Sharon H McCann, Alan Norrish, Alasdair C Ivens, Danial Lawson, Mark P Levick, Deborah F Smith, Sabrina D Dyall, David Vetrie, Tom C Freeman, Richard M Coulson, Iracilda Sampaio, Horacio Schneider and Jenefer M Blackwell Molecular and Biochemical Parasitology, July 2004; 136(1): 87-100 High-resolution mapping of amplicons of the short arm of chromosome 1 in two neuroblastoma tumors by microarray-based comparative genomic hybridization. Anne Fix, Martine Peter, Gaëlle Pierron, Alain Aurias, Olivier Delattre, Isabelle Janoueix-Lerosey Genes Chromosomes Cancer, July 2004; 40(3): 266-270. Adaptation of Campylobacter jejuni NCTC11168 to High-Level Colonization of the Avian Gastrointestinal Tract. Michael A. Jones, Kerrie L. Marston, Claire A. Woodall, Duncan J. Maskell, Dennis Linton, Andrey V. Karlyshev, Nick Dorrell, Brendan W. Wren, and Paul A. Barrow Infect Immunity, July 2004; 72(7): 3769–3776.

Changes in Retinal Pigment Epithelial Gene Expression Induced by Rod Outer Segment Uptake. Itay Chowers, Yoonhee Kim, Ronald H. Farkas, Tushara L. Gunatilaka, Abigail S. Hackam, Peter A. Campochiaro, Silvia C. Finnemann, and Donald J. Zack Investigative Ophthalmology & Visual Science, July 2004; 45(7): 2098-2106 Transcriptional repression by p53 promotes a Bcl-2-insensitive and mitochondria-independent pathway of apoptosis. Nelly Godefroy, Sylvina Bouleau, Gaëtan Gruel, Flore Renaud, Vincent Rincheval, Bernard Mignotte, Diana Tronik-Le Roux, and Jean-Luc Vayssière Nucleic Acids Research, 23 August 2004; 32(15): 4480–4490. Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis. Claire Lurin, Charles Andrés, Sébastien Aubourg, Mohammed Bellaoui, Frédérique Bitton, Clémence Bruyère, Michel Caboche, Cédrig Debast, José Gualberto, Beate Hoffmann, Alain Lecharny, Monique Le Ret, Marie-Laure Martin-Magniette, Hakim Mireau, Nemo Peeters, Jean-Pierre Renou, Boris Szurek, Ludivine Taconnat, and Ian Small Plant Cell, August 2004; 16(8): 2089–2103. Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data. William A. Schmitt, Jr., R. Michael Raab, and Gregory Stephanopoulos Genome Research, August 2004; 14(8): 1654–1663 Microarray Transfection Analysis of Transcriptional Regulation by cAMP-dependent Protein Kinase. Tanya M. Redmond, Xiaomei Ren, Ginger Kubish, Stephen Atkins, Sean Low and Michael D. Uhler Molecular & Cellular Proteomics, August 2004; 3(8): 770-77. Use of DNA Microarrays for Rapid Genotyping of TEM Beta-Lactamases That Confer Resistance. Verena Grimm, Satoshi Ezaki, Milorad Susa, Cornelius Knabbe, Rolf. D. Schmid, and Till T. Bachmann J Clin Microbiology, August 2004; 42(8): 3766–3774. Translocations involving 6p22 in acute myeloid leukaemia at relapse: breakpoint characterization using microarray-based comparative genomic hybridization. Tchinda, Joelle; Dijkhuizen, Trijnie; van der Vlies, Pieter; Kok, Klaas; Horst, Jurgen British Journal of Haematology, August 2004; 126(4): 495-500,. The effect of citalopram on gene expression profile of Alzheimer lymphocytes. András Palotás, László G. Puskás, Klára Kitajka, Miklós Palotás, József Molnár, Magdolna Pákáski, Zoltán Janka, Botond Penke and János Kálmán Neurochem Research, August 2004; 29(8): 1563-1570 Ascorbic acid responsive genes during neuronal differentiation of embryonic stem cells. Shin, Dong-Mi; Ahn, Joon-Ik; Lee, Ki-Hwan; Lee, Yong-Sung; Lee, Yeon-Sook NeuroReport, 26 August 2004; 15(12): 1959-1963 Altered response to mirtazapine on gene expression profile of lymphocytes from Alzheimer's patients.

András Palotás, László G. Puskás, Klára Kitajka, Miklós Palotás, József Molnár, Magdolna Pákáski, Zoltán Janka, Botond Penke and János Kálmán European Journal of Pharmacology, 30 August 2004; 497(3): 247-254 Microarray analysis of microRNA expression in the developing mammalian brain. Eric A Miska, Ezequiel Alvarez-Saavedra, Matthew Townsend, Akira Yoshii, Nenad Šestan, Pasko Rakic, Martha Constantine-Paton, and H Robert Horvitz Genome Biology, 31 August 2004; 5: R68 Orthogonal analysis of C/EBPβ targets in vivo during liver proliferation. Joshua R. Friedman, Brian Larris, Phillip P. Le, T. Harshani Peiris, Athanasios Arsenlis, Jonathan Schug, John W. Tobias, Klaus H. Kaestner, and Linda E. Greenbaum Proc Natl Acad Sci U S A, 31 August 2004; 101(35): 12986–12991 Comparative gene expression analysis of murine retina and brain. Abigail S. Hackam, Jiang Qian, Dongmei Liu, Tushara Gunatilaka, Ronald H. Farkas, Itay Chowers, Masaaki Kageyama, Giovanni Parmigiani, Donald J. Zack Molecular Vision, 31 August 2004; 10: 637-649 Inability of L22 ribosomal protein alteration to increase macrolide MICs in the absence of efflux mechanism in Haemophilus influenzae HMC-S. Mihaela Peric, Bülent Bozdogan, Chad Galderisi, Dan Krissinger, Terry Rager and Peter C. Appelbaum J Antimicrobial Chemotherapy, August 2004; 54(2): 393-400 Functional immunomics: Microarray analysis of IgG autoantibody repertoires predicts the future response of NOD mice to an inducer of accelerated diabetes. Francisco J. Quintana, Peter H. Hagedorn, Gad Elizur, Yifat Marbel, Eytan Domany, Irun R. Cohen In: arXiv:q-bio/0409018v1 [q-bio.TO], 16 September 2004; Development and Validation of a Diagnostic DNA Microarray To Detect Quinolone-Resistant Escherichia coli among Clinical Isolates. Xiaolei Yu, Milorad Susa, Cornelius Knabbe, Rolf D. Schmid, and Till T. Bachmann J Clin Microbiology, September 2004; 42(9): 4083–4091. Sinorhizobium meliloti ExoR and ExoS Proteins Regulate both Succinoglycan and Flagellum Production. Shi-Yi Yao, Li Luo, Katherine J. Har, Anke Becker, Silvia Rüberg, Guan-Qiao Yu, Jia-Bi Zhu, and Hai-Ping Cheng. J Bacteriology, September 2004; 186(18): 6042–6049 Towards transcript profiling of desiccation tolerance in Xerophyta humilis: Construction of a normalized 11 k X. humilis cDNA set and microarray expression analysis of 424 cDNAs in response to dehydration. Helen Collett, Arthur Shen, Michael Gardner, Jill M Farrant, Katherine J. Denby, Nicola Illing Physiologia Plantarum, September 2004; 122(1): 39-53 ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development.

Rob Alba, Zhangjun Fei, Paxton Payton, Yang Liu, Shanna L. Moore, Paul Debbie, Jonathan Cohn, Mark D’Ascenzo, Jeffrey S. Gordon1, Jocelyn K. C. Rose, Gregory Martin, Steven D. Tanksley, Mondher Bouzayen, Molly M. Jahn and Jim Giovannoni The Plant Journal, September 2004; 39(5): 697–714 Monitoring gene expression along pear fruit development, ripening and senescence using cDNA microarrays. Sandra Fonseca, László Hackler, Jr., Ágnes Zvara, Sílvia Ferreira, Aladje Baldé, Dénes Dudits, Maria S. Pais and László G. Puskás Plant Science, September 2004; 167(3): 457-469. Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection. Matthew L. Rise, Simon R. M. Jones, Gordon D. Brown, Kristian R. von Schalburg, William S. Davidson and Ben F. Koop Physiol. Genomics, 28 September 2004; 20(1): 21-35 Prediction of Clinical Outcome Using Gene Expression Profiling and Artificial Neural Networks for Patients with Neuroblastoma. Jun S. Wei, Braden T. Greer, Frank Westermann, Seth M. Steinberg, Chang-Gue Son, Qing-Rong Chen, Craig C. Whiteford, Sven Bilke, Alexei L. Krasnoselsky, Nicola Cenacchi, Daniel Catchpoole, Frank Berthold, Manfred Schwab, and Javed Khan Cancer Research, 1 October 2004; 64(19): 6883–6891. Gene Expression Profiling of Differentiated Thyroid Neoplasms. Diagnostic and Clinical Implications. Sylvie Chevillard, Nicolas Ugolin, Philippe Vielh, Katherine Ory, Céline Levalois, Danielle Elliott, Gary L. Clayman and Adel K. El-Naggar Clinical Cancer Research, 1 October 2004; 10(19): 6586-6597. Functional immunomics: Microarray analysis of IgG autoantibody repertoires predicts the future response of mice to induced diabetes. Francisco J. Quintana, Peter H. Hagedorn, Gad Elizur, Yifat Merbl, Eytan Domany, and Irun R. Cohen Proc Natl Acad Sci U S A, 5 October 2004; 101(Suppl. 2): 14615-14621. CHEMICAL GENOMICS FOR FASTAND INTEGRATED TARGET IDENTIFICATION AND LEAD OPTIMIZATION. Ferenc Darvas, György Dormán, László G. Puskás, Ágota Bucsai and László Ürge Medicinal Chemistry Research, October 2004; 13(8-9): 643-659. Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. Dongling Zheng, Chrystala Constantinidou, Jon L. Hobman, and Stephen D. Minchin Nucleic Acids Research, 1 November 2004; 32(19): 5874–5893 Amplicon secondary structure prevents target hybridization to oligonucleotide microarrays. Samantha Lane, James Evermann, Frank Loge and Douglas R. Call Biosensors and Bioelectronics, 1 November 2004; 20(4): 728-735 Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.

Henrik Bengtsson, Göran Jönsson, and Johan Vallon-Christersson BMC Bioinformatics, 12 November 2004; 5: 177. A prototype antibody microarray platform to monitor changes in protein tyrosine phosphorylation. Dmitry S. Gembitsky, Kevin Lawlor, Andrew Jacovina, Mariana Yaneva and Paul Tempst Mol Cell Proteomics, November 2004; 3(11): 1102-1118. A virulence-associated gene microarray: a tool for investigation of the evolution and pathogenic potential of Staphylococcus aureus. Nicholas A. Saunders, Anthony Underwood, Angela M. Kearns and Gillian Hallas Microbiology, November 2004; 150(Pt 11):3763-71 Global analysis of the expression patterns of transcriptional regulatory factors in formation of embryoid bodies using sensitive oligonucleotide microarray systems. Wataru Gunjia, b, Takahito Kaia, b, Eiko Sameshimac, Naomi Iizukac, Hiroaki Katagic, Takahiko Utsugib, Fumihiro Fujimoria and Yasufumi Murakami Biochemical and Biophysical Research Communications, 3 December 2004; 325(1): 265-275 Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection. Matthew L. Rise, Simon R. M. Jones, Gordon D. Brown, Kristian R. von Schalburg, William S. Davidson and Ben F. Koop Physiol Genomics, 15 December 2004; 20(1): 21-35 Identification of new classes among acute myelogenous leukaemias with normal karyotype using gene expression profiling. Norbert Vey, Marie-Joëlle Mozziconacc, Agnès Groulet-Martinec, Stéphane Debono, Pascal Finetti, Nadine Carbuccia, Emmanuel Beillard, Elizabeth Devilard, Christine Arnoulet, Diane Coso, Danielle Sainty, Luc Xerri, Anne-Marie Stoppa, Marina Lafage-Pochitaloff, Catherine Nguyen, Rémi Houlgatte, Didier Blaise, Dominique Maraninchi, Françoise Birg, Daniel Birnbaum and François Bertucci Oncogene, 16 December 2004; 23(58): 9381-9391 DNA Microarrays for Virus Detection in Cases of Central Nervous System Infection Yury S. Boriskin, Philip S. Rice, Richard A. Stabler, Jason Hinds, Hasan Al-Ghusein, Keith Vass, and Philip D. Butcher J Clin Microbiology, December 2004; 42(12): 5811–5818. Microarray genotyping resource to determine population stratification in genetic association studies of complex disease. Scott J. Tebbutt, Jian-Qing He, Kelly M. Burkett, Jian Ruan, Igor V. Opushnyev, Ben W. Tripp, Jeffrey A. Zeznik, Chiaka O. Abara, Colleen C. Nelson, and Keith R. Walley BioTechniques, December 2004; 37(6): 977-985 Development of a Universal Microarray Based on the Ligation Detection Reaction and 16S rRNA Gene Polymorphism To Target Diversity of Cyanobacteria. Bianca Castiglioni, Ermanno Rizzi, Andrea Frosini, Kaarina Sivonen, Pirjo Rajaniemi, Anne Rantala, Maria Angela Mugnai, Stefano Ventura, Annick Wilmotte, Christophe Boutte, Stana Grubisic, Pierre Balthasart, Clarissa Consolandi, Roberta Bordoni, Alessandra Mezzelani, Cristina Battaglia, and Gianluca De Bellis

Appl Environ Microbiology, December 2004; 70(12): 7161–7172 Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays. Gitika Panicker, Douglas R. Call, Melissa J. Krug, and Asim K. Bej Appl Environ Microbiology, December 2004; 70(12): 7436-7444. Design of a real time quantitative PCR assay to assess global mRNA amplification of small size specimens for microarray hybridization. V Choesmel, F Foucault, J P Thiery, and N Blin J Clin Pathology, December 2004; 57(12): 1278–1287. Identification and analysis of safener-inducible expressed sequence tags in Populus using a cDNA microarray. A.S. Rishi, Shirin Munir, Vivek Kapur, Neil D. Nelson and Arun Goyal Planta, December 2004; 220(2): 296-306 Global transcription profiles and intracellular pH regulation measured in Bacillus licheniformis upon external pH upshifts. Tina Hornbæk, Mogens Jakobsen, Jens Dynesen and Allan K. Nielsen Archives of Microbiology, December 2004; 182(6):467-474 Regulators Encoded in the Escherichia coli Type III Secretion System 2 Gene Cluster Influence Expression of Genes within the Locus for Enterocyte Effacement in Enterohemorrhagic E. coli O157:H7. Lihong Zhang, Roy R. Chaudhuri, Chrystala Constantinidou, Jon L. Hobman, Mala D. Patel, Antony C. Jones, Donatella Sarti, Andrew J. Roe, Isabella Vlisidou, Robert K. Shaw, Francesco Falciani, Mark P. Stevens, David L. Gally, Stuart Knutton, Gad Frankel, Charles W. Penn, and Mark J. Pallen Infect Immunity, December 2004; 72(12): 7282–7293. Gene Expression Profiling for Molecular Characterization of Inflammatory Breast Cancer and Prediction of Response to Chemotherapy. François Bertucci, Pascal Finetti, Jacques Rougemont, Emmanuelle Charafe-Jauffret, Valéry Nasser, Béatrice Loriod, Jacques Camerlo, Rebecca Tagett, Carole Tarpin, Gilles Houvenaeghel, Catherine Nguyen, Dominique Maraninchi, Jocelyne Jacquemier, Rémi Houlgatte, Daniel Birnbaum, Patrice Viens Cancer Research, 1 December 2004; 64(23): 8558-8565 Gene Expression Studies Using Self-Fabricated Parasite cDNA Microarrays. Karl F. Hoffmann and Jennifer M. Fitzpatrick Methods in Molecular Biology, (Parasite Genomics Protocols), 2004; 270: 219-36 Development of chemically modified glass surfaces and methods for microarray technologies. Laszlo Hackler, PhD Thesis Biological Research Center, Laboratory of Functional Genomics, Szeged, Hungary, 2004 2003

Specificity assessment from fractionation experiments (SAFE): a novel method to evaluate microarray probe specificity based on hybridisation stringencies. Alexei L. Drobyshev, Christine Machka, Marion Horsch, Matthias Seltmann, Volkmar Liebscher, Martin Hrabé de Angelis, and Johannes Beckers Nucleic Acids Research, 15 January 2003; 31(2): e1. Analysis of whole-genome microarray replicates using mixed models. Lorenz Wernisch, Sharon L. Kendall, Shamit Soneji, Andreas Wietzorrek, Tanya Parish, Jason Hinds, Philip D. Butcher and Neil G. Stoker Bioinformatics, January 2003; 19(1): 53-61 Effect of classic preconditioning on the gene expression pattern of rat hearts: a DNA microarray study. Annamária Ónodya, Ágnes Zvarab, László Hackler Jr.b, László Vı́ghc, Péter Ferdinandya, László G. Puskásb FEBS Letters, 11 February 2003; 536(1): 35-40 Short-term administration of omega 3 fatty acids from fish oil results in increased transthyretin transcription in old rat hippocampus. László G. Puskás, Klára Kitajka, Csaba Nyakas, Gwendolyn Barcelo-Coblijn, and Tibor Farkas Proc Natl Acad Sci U S A, 18 February 2003; 100(4): 1580–1585 Method for printing functional protein microarrays Delehanty, J. B., and F. S. Ligler. Biotechniques, February 2003; 34(2): 380–385. Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles. Qianfan Bai, Christine McGillivray, Nuno da Costa, Saffron Dornan, Gary Evans, Michael James Stear, and Kin-Chow Chang BMC Genomics, 1 March 2003; 4: 8. Molecular Analysis of the Multiple GroEL Proteins of Chlamydiae. Karuna P. Karunakaran, Yasuyuki Noguchi, Timothy D. Read, Artem Cherkasov, Jeffrey Kwee, Caixia Shen, Colleen C. Nelson, and Robert C. Brunham J Bacteriology, March 2003; 185(6): 1958–1966. Development of chemically modified glass surfaces for nucleic acid, protein and small molecule microarrays. László Hackler Jr., György Dormán, Zoltán Kele, László Ürge, Ferenc Darvas and László G. Puskás Molecular Diversity, March 2003; 7(1): 25-36. Detection of potato viruses using microarray technology: towards a generic method for plant viral disease diagnosis. Boonham N, Walsh K, Smith P, Madagan K, Graham I, Barker I. J Virol Methods, March 2003; 108(2): 181-187 Antibody microarrays: an evaluation of production parameters. Wlad Kusnezow, Anette Jacob, Alexandra Walijew, Frank Diehl, Jörg D. Hoheisel

Proteomics, March 2003; 3(3): 254-264 Protein microarrays: Meeting analytical challenges for clinical applications. Lance A Liotta, Virginia Espina, Arpita I Mehta, Valerie Calvert, Kevin Rosenblatt, David Geho, Peter J Munson, Lynn Young, Julia Wulfkuhle and Emanuel F Petricoin Cancer Cell, 1 April 2003; 3(4): 317-325 Identification of NF-kappa B-regulated genes induced by TNFalpha utilizing expression profiling and RNA interference. Anwu Zhou, Shane Scoggin, Richard B Gaynor and Noelle Sevilir Williams Oncogene, 3 April 2003; 22(13): 2054-2064 Microarray data warehouse Inventors: Fellenberg, Kurt and Hauser, Nicole EU Patent Application EP1300778 A1; Application #: EP20020022462; Publication Date: 09 April 2003 DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones. Heike Fiegler, Philippa Carr, Eleanor J. Douglas, Deborah C. Burford, Sarah Hunt, James Smith, David Vetrie, Patricia Gorman, Ian P.M. Tomlinson, Nigel P. Carter

Genes Chromosomes Cancer, April 2003; 36(4): 361-374 Monitoring global messenger RNA changes in externally controlled microarray experiments. Jeroen van de Peppel, Patrick Kemmeren, Harm van Bakel, Marijana Radonjic, Dik van Leenen, and Frank C.P. Holstege EMBO Reports, April 2003; 4(4): 387–393. Resource and hardware options for microarray-based experimentation. Nabeel A. Affara Briefings in Functional Genomics & Proteomics, April 2003; 2(1): 7-20. (MG, MG Compact) http://bfg.oxfordjournals.org/content/2/1/7.full.pdf+html Molecular Interactions between the Specialist Herbivore Manduca sexta (Lepidoptera, Sphingidae) and Its Natural Host Nicotiana attenuata. VI. Microarray Analysis Reveals That Most Herbivore-Specific Transcriptional Changes Are Mediated by Fatty Acid-Amino Acid Conjugates Rayko Halitschke, Klaus Gase, Dequan Hui, Dominik D. Schmidt, and Ian T. Baldwin Plant Physiology, April 2003; 131(4): 1894–1902 Regulation of Host Cell Transcriptional Physiology by the Avian Pneumovirus Provides Key Insights into Host-Pathogen Interactions. Shirin Munir and Vivek Kapur J Virology, April 2003; 77(8): 4899–4910 Microwave enhanced reaction of carbohydrates with amino-derivatised labels and glass surfaces Edwin A. Yates, Martin O. Jones, Caroline E. Clarke, Andrew K. Powell, Simon R. Johnson, Adrian Porch, Peter P. Edwards and Jeremy E. Turnbull, Journal of Materials Chemistry, April 2003; 13(9): 2061-2063

Microarrrays in the NKI cancer research: building platforms, fine-tuning analysis and developing diagnostic tools. Ron Kerkhoven In: CNIO (Centro Nacional de Investigaciones Oncológicas) Meeting, DNA Arrays 2003, Melchor Fernández Almagro, 3, E-28029 Madrid, Spain, 9 May 2003; p.13-14 Methods in molecular cardiology: microarray technology. B. van den Bosch, P.A. Doevendans, D. Lips, and H.J.M. Smeets Neth Heart Journal, May 2003; 11(5): 213–220. Transcriptional analysis of the response of poultry species to respiratory pathogens. S Munir and V Kapur Poultry Science, June 2003; 82(6): 885-892 Particle Immobilized Coatings and Uses Thereof. Inventors: Patrick E. Guire, Kristin S. Taton, John V. Wall US Patent Application: 2003/0129130 A1, Publication Date: 10 July 2003; (MGII) http://www.google.com/patents/US20030129130 A STAT-regulated, stress-induced signalling pathway in Dictyostelium Tsuyoshi Araki, Masatsune Tsujioka, Tomoaki Abe, Masashi Fukuzawa, Marcel Meima, Pauline Schaap, Takahiro Morio, Hideko Urushihara, Mariko Katoh, Mineko Maeda, Yoshimasa Tanaka, Ikuo Takeuchi and Jeffrey G. Williams J Cell Science, 15 July 2003; 116(14): 2907-2915 Transcriptional Program of the Endocrine Pancreas in Mice and Humans. Klaus H. Kaestner, Catherine S. Lee, L. Marie Scearce, John E. Brestelli, Athanasios Arsenlis, Phillip Phuc Le, Kristen A. Lantz, Jonathan Crabtree, Angel Pizarro, Joan Mazzarelli, Deborah Pinney, Steve Fischer, Elisabetta Manduchi, Christian J. Stoeckert, Jr.; Gerard Gradwohl, Sandra W. Clifton, Juliana R. Brown, Hiroshi Inoue, Corentin Cras-Méneur and M. Alan Permutt Diabetes, July 2003; 52(7): 1604-1610 In vitro protein microarrays for detecting protein-protein interactions: application of a new method for fluorescence labeling of proteins. Yuko Kawahashi, Nobuhide Doi, Hideaki Takashima, Chizuru Tsuda, Yuko Oishi, Rieko Oyama, Masato Yonezawa, Etsuko Miyamoto-Sato, Hiroshi Yanagawa Proteomics, July 2003; 3(7): 1236-1243. Metagenomic Profiling: Microarray Analysis of an Environmental Genomic Library. Jonathan L. Sebat, Frederick S. Colwell, and Ronald L. Crawford Appl Environ Microbiology, August 2003; 69(8): 4927–4934. Convergent Responses to Stress. Solar Ultraviolet-B Radiation and Manduca sexta Herbivory Elicit Overlapping Transcriptional Responses in Field-Grown Plants of Nicotiana longiflora. Miriam M. Izaguirre, Ana L. Scopel, Ian T. Baldwin, and Carlos L. Ballaré Plant Physiology, August 2003; 132(4): 1755–1767. DNA Array-Based Transcriptional Analysis of Asporogenous, Nonsolventogenic Clostridium acetobutylicum Strains SKO1 and M5.

Christopher A. Tomas, Keith V. Alsaker, Hendrik P. J. Bonarius, Wouter T. Hendriksen, He Yang, Jeffrey A. Beamish, Carlos J. Paredes, and Eleftherios T. Papoutsakis J Bacteriology, August 2003; 185(15): 4539–4547 A Mixed Effects Model for Analysis of Experimental Variation in cDNA Microarrays WMJ Mackus. Master’s Thesis, August 2003; Technische Universiteit Eindhoven. Overexpression of groESL in Clostridium acetobutylicum Results in Increased Solvent Production and Tolerance, Prolonged Metabolism, and Changes in the Cell's Transcriptional Program. Christopher A. Tomas, Neil E. Welker, and Eleftherios T. Papoutsakis Appl Environ Microbiology, August 2003; 69(8): 4951–4965. A canine cancer-gene microarray for CGH analysis of tumors. Thomas R, Fiegler H, Ostrander EA, Galibert F, Carter NP, Breen M. Cytogenet Genome Research, 2003; 102(1-4): 254-260 (accepted 5 August 2003) Application of DNA Microarrays to Study the Evolutionary Genomics of Yersinia pestis and Yersinia pseudotuberculosis. Stewart J. Hinchliffe, Karen E. Isherwood, Richard A. Stabler, Michael B. Prentice, Alexander Rakin, Richard A. Nichols, Petra C.F. Oyston, Jason Hinds, Richard W. Titball, and Brendan W. Wren Genome Research, September 2003; 13(9): 2018–2029 Array painting: a method for the rapid analysis of aberrant chromosomes using DNA microarrays. Fiegler H, Gribble SM, Burford DC, Carr P, Prigmore E, Porter KM, Clegg S, Crolla JA, Dennis NR, Jacobs P, Carter NP. J Med Genetics, September 2003; 40(9): 664-670. Apolipoprotein E and transferrin genotyping by ligation detection reaction and universal array. Roberta Bordoni, Bianca Castiglioni, Alessandra Mezzelani, Ermanno Rizzi, Andrea Frosini, Clarissa Consolandi, Luigi Rossi Bernardi, Cristina Battaglia and Gianluca De Bellis Clinical Chemistry, September 2003; 49(9): 1537-1540 Identification of novel genes preferentially expressed in the retina using a custom human retina cDNA microarray. Itay Chowers, Tushara L. Gunatilaka, Ronald H. Farkas, Jiang Qian, Abigail S. Hackam, Elia Duh, Masaaki Kageyama, Chenwei Wang, Amit Vora, Peter A. Campochiaro, Donald J. Zack Investigative Ophthalmology & Visual Science, September 2003; 44(9): 3732-3741. A microarray-based high throughput molecular marker genotyping method: the tagged microarray marker (TAM) approach. Andrew J. Flavell, Viacheslav N. Bolshakov, Allan Booth, Runchun Jing, Joanne Russell, T. H. Noel Ellis, and Peter Isaac Nucleic Acids Research, 1 October 2003; 31(19): e115. Identifying Antimicrobial Resistance Genes with DNA Microarrays. Douglas R. Call, Marlene K. Bakko, Melissa J. Krug, and Marilyn C. Roberts Antimicrobial Agents and Chemotherapy, October 2003; 47(10): 3290-3295. Protein microarrays: Molecular profiling technologies for clinical specimens. Review.

Virginia Espina, Arpita I. Mehta, Mary E. Winters, Valerie Calvert, Julia Wulfkuhle, Emanuel F. Petricoin III, Lance A. Liotta Proteomics, 27 October 2003; 3(11): 2091 – 2100 Expression profiling of translation-associated genes in sporulating Bacillus subtilis and consequence of sporulation by gene inactivation Yoshiaki Ohashi, Takashi Inaoka, Koji Kasai, Yasuhiro Ito, Hideo Satsu, Yuzuru Tozawa, Fujio Kawamura, and Kozo Ochii Bioscience, Biotechnology and Biochemistry, October 2003; 67(10): 2245-2253 http://www.tandfonline.com/doi/pdf/10.1271/bbb.67.2245 A DNA damage checkpoint response in telomere-initiated senescence. Fabrizio d'Adda di Fagagna, Philip M. Reaper, Lorena Clay-Farrace, Heike Fiegler, Philippa Carr, Thomas von Zglinicki, Gabriele Saretzki, Nigel P. Carter & Stephen P. Jackson Nature, 13 November 2003; 426(6963): 194-198 Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis. L. Petalidis, S. Bhattacharyya, G. A. Morris, V. P. Collins, T. C. Freeman, and P. A. Lyons Nucleic Acids Research, 15 November 2003; 31(22): e142. Gene expression variation in the adult human retina. Itay Chowers, Dongmei Liu, Ronald H. Farkas, Tushara L. Gunatilaka, Abigail S. Hackam, Steven L. Bernstein, Peter A. Campochiaro, Giovanni Parmigiani and Donald J. Zack Hum Mol Genetics, 15 November 2003; 12(22): 2881-2893 A specialized training year in post-genomics for highly skilled technicians. Daniel Loncle , Jean Rossier Biochemistry and Molecular Biology Education, November 2003; 31(6): 437 - 439 Gene Expression Profiling during All-trans Retinoic Acid-Induced Cell Differentiation of Acute Promyelocytic Leukemia Cells. Lijun Yang, Hongshan Zhao, Shi-Wu Li, Kim Ahrens, Christine Collins, Sarah Eckenrode, Qing-guo Ruan, Richard A. McIndoe, and Jin-Xiong She J Mol Diagnostics, November 2003; 5(4): 212–221. Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression. Silvia Rüberg, Zhe-Xian Tian, Elizaveta Krol, Burkhard Linke, Folker Meyer, Yiping Wang, Alfred Pühler, Stefan Weidner and Anke Becker Journal of Biotechnology, 19 December 2003; 106(2-3): 255-268 Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source. Andrea T. Hüser, Anke Becker, Iris Brune, Michael Dondrup, Jörn Kalinowski, Jens Plassmeier, Alfred Pühler, Iris Wiegräbe and Andreas Tauch Journal of Biotechnology, 19 December 2003; 106(2-3): 269-286 Gene expression profiles of primary breast tumors maintained in distant metastases.

Britta Weigelt, Annuska M. Glas, Lodewyk F. A. Wessels, Anke T. Witteveen, Johannes L. Peterse, and Laura J. van't Veer Proc Natl Acad Sci U S A, 23 December 2003; 100(26): 15901–15905. Clinically validated benchmarking of normalisation techniques for two-colour oligonucleotide spotted microarray slides. Jennifer Listgarten, Kathryn Graham, Sambasivarao Damaraju, Carol Cass, John Mackey, Brent Zanke Appl Bioinformatics, 2003; 2(4): 219-28 Construction of a Yersinia pestis Microarray Richard A. Stabler, Jason Hinds, Adam A. Witney, Karen Isherwood, Petra Oyston, Richard Titball, Brendan Wren, Stewart Hinchliffe, Michael Prentice, Joseph A. Mangan and Phillip D. Butcher In: The Genus Yersinia, Advances in Experimental Medicine and Biology, Mikael Skurnik, José Antonio Bengoechea and Kaisa Granfors Eds. Kluwer Academic/Plenum Publishers, New York, 2003, V. 529, pp. 47-49. Quantitative microarray spot profile optimization: A systematic evaluation of buffer/slide combinations. David P. Kreil, Richard P. Auburn, Lisa A. Meadows, Steven Russell, Gos Micklem In: German Conference in Bioinformatics, GCB, 2003, 7pp Supplement:http://www.inference.phy.cam.ac.uk/dpk20/spotprofiles 2002 GENE EXPRESSION PROFILING BY DNA MICROARRAY TECHNOLOGY. Keisuke Iida and Ichiro Nishimura Crit. Rev. Oral Biol. Medicine, January 2002, 13(1): 35-50 Generating addressable protein microarrays with PROfusion covalent mRNA-protein fusion technology. Shawn Weng, Ke Gu, Philip W. Hammond, Peter Lohse, Cecil Rise, Richard W. Wagner, Martin C. Wright, Robert G. Kuimelis Proteomics, January 2002; 2(1): 48-57 Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor. Derrick E. Fouts, Robert B. Abramovitch, James R. Alfano, Angela M. Baldo, C. Robin Buell, Samuel Cartinhour, Arun K. Chatterjee, Mark D'Ascenzo, Michelle L. Gwinn, Sondra G. Lazarowitz, Nai-Chun Lin, Gregory B. Martin, Amos H. Rehm, David J. Schneider, Karin van Dijk, Xiaoyan Tang, and Alan Collmer Proc Natl Acad Sci U S A, 19 February 2002; 99(4): 2275–2280. The role of n-3 polyunsaturated fatty acids in brain: Modulation of rat brain gene expression by dietary n-3 fatty acids. Klára Kitajka, László G. Puskás, Ágnes Zvara, László Hackler, Jr., Gwendolyn Barceló-Coblijn, Young K. Yeo, and Tibor Farkas Proc Natl Acad Sci U S A, 5 March 2002; 99(5): 2619–2624.

Novel Fluorescence Labeling and High-Throughput Assay Technologies for In Vitro Analysis of Protein Interactions. Nobuhide Doi, Hideaki Takashima, Masataka Kinjo, Kyoko Sakata, Yuko Kawahashi, Yuko Oishi, Rieko Oyama, Etsuko Miyamoto-Sato, Tatsuya Sawasaki, Yaeta Endo, and Hiroshi Yanagawa Genome Research, March 2002; 12(3): 487–492. METHOD AND APPARATUS FOR VISUALIZING COMPLEX DATA SETS Inventor: Seth Taylor Patent Application Publication NO: US 2002/0052882 Al; Pub. Date: 2 May 2 2002 A custom microarray analysis of gene expression during programmed cell death in Arabidopsis thaliana. Jodi A. Swidzinski , Lee J. Sweetlove and Christopher J. Leaver Plant Journal, May 2002; 30(4): 431-46 Recovery of cyanine-dye nucleotide triphosphates. Puskás Laszlo G, Hackler Laszlo Jr, Kovács Gyorgyi, Kupihár Zoltan, Zvara Agnes, Micsik Tamas, van Hummelen Paul. Analytical Biochemistry, 15 June 2002; 305(2): 279-81 Protein Microarrays to Detect Protein–Protein Interactions Using Red and Green Fluorescent Proteins. Thomas Kukar, Sarah Eckenrode, Yunrong Gu, Wei Lian, Mike Megginson, Jin-Xiong She, Donghai Wu Analytical Biochemistry, 1 July 2002; 306(1): 50-54 Microarrayers on the Spot. Deborah Fitzgerald The Scientist, 8 July 2002; 16(14): 42 BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Lao H Saal, Carl Troein, Johan Vallon-Christersson, Sofia Gruvberger, Åke Borg and Carsten Peterson Genome Biology, 15 July 2002; 3(8): software 0003.1–0003.6 Transcriptional Response of Pasteurella multocida to Nutrient Limitation. Michael L. Paustian, Barbara J. May, and Vivek Kapur J Bacteriology, July 2002; 184(13): 3734–3739. Identification of Schistosoma mansoni gender-associated gene transcripts by cDNA microarray profiling. Karl F Hoffmann, David A Johnston, and David W Dunne Genome Biology, 25 July 2002; 3(8): research0041.1–research0041.12. http://www.biomedcentral.com/content/pdf/gb-2002-3-8-research0041.pdf Manufacturing DNA microarrays from unpurified PCR products. Frank Diehl, Boris Beckmann, Nadine Kellner, Nicole C. Hauser, Susanne Diehl, and Jörg D. Hoheisel Nucleic Acids Research, 15 August 2002; 30(16): e79. Comparison of different labeling methods for two-channel high-density microarray experiments.

Elisabetta Manduchi, L. Marie Scearce, John E. Brestelli, Gregory R. Grant, Klaus H. Kaestner and Christian J. Stoeckert, JR. Physiol. Genomics, 3 September 2002; 10(3): 169-79 Oliz, a suite of Perl scripts that assist in the design of microarrays using 50mer oligonucleotides from the 3' untranslated region. Hao Chen and Burt M Sharp BMC Bioinformatics, 6 October 2002; 3: 27. METHOD TO MONITOR A FERMENTATION PROCESS. Inventors: Mike Farwick, Jennifer Brehme, Thomas Hermann, Brigitte Bathe, Achim Marx, Bettina Mockel, Mechthild Rieping, Eugen Ermantraut, Thomas Ellinger, Klaus Huthmacher, Walter Pfefferle Patent Application Publication # US 2002/0151700 Al; Pub. Date: 17 October 2002 Virulence typing of Escherichia coli using microarrays. C. Ijperen, P. Kuhnert, J. Frey and J. P. Clewley Molecular and Cellular Probes, October 2002; 16(5): 371-378 A Forkhead Transcription Factor Is Important for True Hyphal as well as Yeast Morphogenesis in Candida albicans. Eric S. Bensen, Scott G. Filler, and Judith Berman Eukaryotic Cell, October 2002; 1(5): 787–798 Dissection of the heat-shock response in Mycobacterium tuberculosis using mutants and microarrays. Graham R. Stewart, Lorenz Wernisch, Richard Stabler, Joseph A. Mangan, Jason Hinds, Ken G. Laing, Douglas B. Young and Philip D. Butcher Microbiology, October 2002; 148(10): 3129-38 The Chlamydomonas reinhardtii Organellar Genomes Respond Transcriptionally and Post-Transcriptionally to Abiotic Stimuli. Jason W. Lilly, Jude E. Maul, and David B. Stern Plant Cell, November 2002; 14(11): 2681–2706. Microarray design for bacterial genomes Hinds, J., A. A. Witney, and J. K. Vass. In: Methods in microbiology: functional microbial genomics, v. 33, B. W. Wren and N. Dorell (ed.), Academic Press, London, United Kingdom, 26 December 2002; p. 67-82. Glass slide microarray for bacterial genomes. Hinds, J., K. G. Laing, J. A. Mangan, and P. D. Butcher. In: Methods in microbiology: functional microbial genomics, v. 33, B. W. Wren and N. Dorell (ed.), Academic Press, London, United Kingdom, 26 December 2002; p. 83-99. Gene Discovery in the Embryonic Chick Retina: A Microarray-based Approach. RL Bradford, AS Hackam, DJ Zack and R Adler Invest Ophthalmol Vis Science, 2002; 43: E-Abstract 2677

CHARACTERIZATION OF THE MOLECULAR BASIS OF TYPE 1 DIABETES USING LINKAGE AND MICROARRAY ANALYSIS. Sarah E. Eckenrode Ph.D. Thesis, UNIVERSITY OF FLORIDA, 2002; p.1-114. 2001 Whole Genome Comparison of Campylobacter jejuni Human Isolates Using a Low-Cost Microarray Reveals Extensive Genetic Diversity. Nick Dorrell, Joseph A. Mangan, Kenneth G. Laing, Jason Hinds, Dennis Linton, Hasan Al-Ghusein, Bart G. Barrell, Julian Parkhill, Neil G. Stoker, Andrey V. Karlyshev, Philip D. Butcher, and Brendan W. Wren Genome Research, October 2001; 11(10): 1706-1715. 2000 cDNA microarray technology and its applications. Charlie C. Xiang and Yidong Chen Biotechnoogyl Advances, March 2000; 18(1): 35-46. Array of Options. Jorge Cortese The Scientist, 29 May 2000, 14(11): 26 Biotechnological applications of lab-chips and microarrays. Kewal K Jain Trends in Biotechnology, 1 July 2000, 18(7): 278-280. Automation for Genomics, Part Two: Sequencers, Microarrays, and Future Trends. Deirdre Meldrum Genome Research, September 2000; 10(9): 1288-1303 Maintenance of quill pins and performance tests. Ingo Fritz, Nicole Greiner, Elisabeth Socha, Thomas Nitsche, Thomas Przewieslik, Claus Hultschig NGFN Protocol, 15 October 2000; Version 2.3, 4 pp http://www.science.ngfn.de/dateien/Spotting_pins_in_performance_tests.pdf Product Review: Spotting a microarray system. Elizabeth Zubritsky Analytical Chemistry, December 2000; 72(23): 761A-767A (MGII) http://pubs.acs.org/doi/pdf/10.1021/ac002997u 1999

Options available--from start to finish--for obtaining expression data by microarray. David D.L. Bowtell Nature Genetics, January 1999; 21(1 Suppl): 25-32. Microarrays - chances and challenges CP Pilarsky, AO Schmitt, E Dahl, A Rosenthal Current Opinion in Molecular Therapeutics, 1999 1:727-736