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Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

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Page 1: Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

Publications of the Research Group on Natural Computing

(from 2000 to present date)

November 27, 2013

Publications in ISI Ranked Journals (excluding LNCS)

References

[1] T. Song, L.F. Macías-Ramos, L. Pan, M.J. Pérez-Jiménez. Time-free solution to SAT prob-lem using P systems with active membranes. Theoretical Computer Science, online version (doi:10.1016/j.tcs.2013.11.014). Impact Factor of 0.489.

[2] M.A. Martínez-del-Amor, J. Pérez-Carrasco, M.J. Pérez-Jiménez. Characterizing the Parallel Simulationof P Systems on the GPU. International Journal of Unconventional Computing, 9, 5-6 (2013), 405�424.Impact Factor of 0.431.

[3] M. Gheorghe, Gh. Paun, M.J. Pérez-Jiménez, Gr. Rozenberg. Research frontiers in Membrane Comput-ing: Open problems and research topics. International Journal of Foundations of Computer Science,24, 5 (2013), 547�557. Impact Factor of 0.420.

[4] M.J. Pérez-Jiménez, A. Riscos, M. Rius, A. Romero. Seeking sharper frontiers of e�ciency in tissueP systems. International Journal of Foundations of Computer Science, 24, 5 (2013), 577�579. ImpactFactor of 0.420.

[5] Gh. Paun, M.J. Pérez-Jiménez, Gr. Rozenberg. Bridging Membrane and Reaction Systems�FurtherResults and Research Topics. Fundamenta Informaticae, 127, 1�4 (2013), 99-114. Impact Factor of0.399.

[6] L. Valencia, M-García-Quismondo, Y. Su, H. Yu, M.J. Pérez-Jiménez, L. Pan. Modeling Logic GeneNetworks by Means of Probabilistic Dynamic P Systems. International Journal of Unconventional Com-puting, 9, 5�6 (2013), 445-464.

[7] J. Wang, P. Shi, H. Peng, M.J. Pérez-Jiménez, T. Wang. Weighted Fuzzy Spiking Neural P Systems.IEEE Transactions on Fuzzy Systems, 21, 2 (2013), 209�220. Impact Factor of 4.260

[8] M. A. Colomer, A. Margalida, M.J. Pérez-Jiménez. Population Dynamics P System (PDP) models: astandarized protocol for describing and applying novel bio-inspired computing tools. Plos One, 8, 4(2013), 1�13. Impact Factor of 4.092.

[9] H. Peng, J. Wang, M.J. Pérez-Jiménez, P. Shi. A novel image thresholding method based on membranecomputing and fuzzy entropy. Journal of Intelligent and Fuzzy Systems, 24, 2 (2013), 229-237. ImpactFactor of 0.556

[10] D. Díaz-Pernil, A. Berciano, F. Peña-Cantillana, M.A. Gutiérrez Naranjo. Segmenting Images withGradient-based Edge Detection Using Membrane Computing. Pattern Recognition Letters, online version(http://dx.doi.org/10.1016/j.patrec.2012.10.014). In press. Impact Factor of 1.034

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Page 2: Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

[11] Gh. Paun, M.J. Pérez-Jiménez. Editorial. Foreword. Special Issue: A selection of papers from the 10thBrainstorming Week on Membrane Computing. International Journal of Computer Mathematics, 90, 4(2013), 747-749. Impact factor of 0.542

[12] R. Freund, I. Pérez-Hurtado, A. Riscos-Núñez, S. Verlan. A formalization of membrane systems withdynamically evolving structures. International Journal of Computer Mathematics, 90, 4 (2013), 801-815.Impact Factor of 0.542

[13] M.J. Pérez-Jiménez, A. Riscos, M. Rius, F.J. Romero. A polynomial alternative to unbounded envi-ronment for tissue P systems with cell division. International Journal of Computer Mathematics, 90, 4(2013), 760-775. Impact Factor of 0.542

[14] M. Gheorghe, F. Ipate, R. Lefticaru, M.J. Pérez-Jiménez, A. Turcanu, L. Valencia-Cabrera, M. García-Quismondo, F. Mierla. 3-COL problem modelling using simple Kernel P systems. International Journalof Computer Mathematics, 90, 4 (2013), 816-830. Impact Factor of 0.542

[15] T. Song, L. Pan, Gh. Paun. Asynchronous spiking neural P systems with local synchronization. Infor-mation Sciences, 219 (2013), 197-207. Impact Factor of 2.833

[16] H. Peng, J. Wang, M.J. Pérez-Jiménez, H. Wang, J. Shao, T. Wang. Fuzzy reason-ing spiking neural P system for fault diagnosis. Information Sciences, 2012, online version(http://dx.doi.org/10.1016/j.ins.2012.07.015). Impact Factor of 2.833

[17] C.I. Vasile, A.B. Pavel, I. Dumitrache, G. Paun. On the power of enzymatic numerical P systems. ActaInformatica, 49, 6 (2012), 395-412. Impact factor of 0.444

[18] Y. Niu, L. Pan, M.J. Pérez-Jiménez. Solving Common Algorithmic Problem with recognizer tisse Psystems. Romanian Journal of Information Science and Technology, 15 - 1 (2012), 33-49. Impact Factorof 0.154

[19] F.C. Cabarle, H.N. Adorna, M.A. Martínez, M.J. Pérez-Jiménez. Improving GPU simulations of SpikingNeural P systems. Romanian Journal of Information Science and Technology, 15 - 1 (2012), 5-20. ImpactFactor of 0.154

[20] Gh. Paun, M.J. Pérez-Jiménez. Towards bridging two cell-inspired models: P systems and R systems.Theoretical Computer Science, 429 (2012), 258-264. (http://dx.doi.org/10.1016/j.tcs.2011.12.046). Im-pact Factor of 0.665

[21] Gh. Paun, M.J. Pérez-Jiménez. P automata revised. Theoretical Computer Science, 454 (2012), 222-230).Impact Factor of 0.665

[22] Gh. Paun, M.J. Pérez-Jiménez. An in�nite hierarchy of languages de�ned by dP systems. TheoreticalComputer Science, 431 (2012), 4-12. Impact Factor of 0.665

[23] J.M. Cecilia, J.M. García, G.D. Guerrero, M.A. Martínez-del-Amor, M.J. Pérez-Jiménez, M. Ujaldón.The GPU on the simulation of cellular computing models. Soft Computing, 16, 2 (2012), 231-246. ImpactFactor of 1.880

[24] J. Blakes, J. Twycross, F.J. Romero-Campero, N. Krasnogor. The Infobiotics Workbench: an integratedin silico modelling platform for Systems and Synthetic Biology. Bioinformatics. 27, 23 (2011), 3323-3324.Impact Factor of 5.468

[25] M. Ionescu, Gh. Paun, M.J. Pérez-Jiménez, T. Yokomori. Spiking Neural dP Systems. FundamentaInformaticae, 111, 4 (2011), 423-436. Impact Factor of 0.365

[26] M.J. Pérez-Jiménez, A. Riscos-Núñez, M. Rius-Font, F.J. Romero-Campero. Looking for small e�cientP systems. Fundamenta Informaticae, 110, 1-4 (2011), 295-308. Impact Factor of 0.365

[27] Y. Niu, L. Pan, M.J. Pérez-Jiménez, M. Rius-Font. A tissue P systems based uniform solution toTripartite Matching problem. Fundamenta Informaticae, 109, (2011), 179-188. Impact Factor of 0.365

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Page 3: Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

[28] R. Freund, M. Gheorghe, S. Marcus, V. Mitrana, M.J. Pérez-Jiménez. Special Issue-Natural Computing:Theory and applications. Preface. International Journal of Foundations of Computer Science, 22, 1(2011), 1-6. Impact Factor of 0.379

[29] L. Pan, Gh. Paun, M.J. Pérez-Jiménez. Spiking neural P systems with neuron division and budding.Science China. Information Sciences, 54, 8 (2011), 1596-1607. (Impact Factor of 0.388

[30] J. Karhumäki, Gh. Paun, G. Rozenberg, A. Salomaa. Preface. Fundamenta Informaticae. 110, 1-4 (2011),1. 94. Impact Factor of 0.365

[31] L. Pan. D. Díaz, M.J. Pérez-Jiménez. Computation of Rumsey numbers by P systems with activemembranes. International Journal of Foundations of Computer Science, 22, 1 (2011), 29-38. ImpactFactor of 0.379

[32] I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos, M.A. Gutiérrez, M. Rius. On a partial a�rmativeanswer for a Paun's conjecture. International Journal of Foundations of Computer Science, 22, 1 (2011),55-64. Impact Factor of 0.379

[33] M.A. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos, F. Sancho. A simulationalgorithm for multienvironment probabilistic P systems: A formal veri�cation. International Journal ofFoundations of Computer Science, 22, 1 (2011), 107-118. Impact Factor of 0.379

[34] M. Cardona, A. Margalida, M.J. Pérez-Jiménez, D. Sanuy. A bio-inspired computing model as a newtool for modeling ecosystems: The avian scavengers as a case study. Ecological modelling, 222, 1 (2011),33-47. Impact Factor of 2.326

[35] L. Pan, Gh. Paun. Spiking Neural P Systems: An improved Normal Form. Theoretical Computer Science,441, 6 (2010), 906-918. Impact Factor of 0.838

[36] H.J. Hoogeboom; L. Pan; Gh. Paun; M.J. Pérez-Jiménez; J. Wang. Spiking Neural P Systems WithWeights. Neural Computation, 22, 10 (2010), 2615-2646. Impact Factor of 2.290

[37] Gh. Paun: A quick introduction to membrane computing. Journal of Logic and Algebraic Programming,79, 6 (2010), 291-294. Impact Factor of 0.552

[38] Gh. Paun, M.J. Pérez-Jiménez. Solving problems in a distributed way in Membrane Computing. Inter-national Journal of Computers, Communications and Control, 5, 2 (2010), 238-250. Impact Factor of0.373

[39] Gh. Paun, M.J.Pérez-Jiménez, Gh. Stefanescu. Membrane Computing and Programming. Journal ofLogic and Algebraic Programming, 79, 6 (2010), 389-390. Impact Factor of 0.552

[40] M.A. Martínez, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos. A P-Lingua based simulator for TissuePsystems. Journal of Logic and Algebraic Programming, 79, 6 (2010), 374-382. Impact Factor of 0.552

[41] Gh. Paun, M.J. Pérez-Jiménez. Foreword. Special Issue on Membrane Computing. Romanian Journalof Information Science and Technology (ROMJIST), 13, 2 (2010), 111-112. Impact Factor of 0.188

[42] H. Adorna, Gh. Paun, M.J. Pérez-Jiménez. On Communication Complexity in Evolution-Communication P Systems. Romanian Journal of Information Science and Technology (ROMJIST),13, 2 (2010), 113-130. Impact Factor of 0.188

[43] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, P. Real, V. Sánchez-Canal es. Computing Homology Groups inBinary 2D Imagery by Tissue-like P Systems. Romanian Journal of Information Science and Technology(ROMJIST), 13, 2 (2010), 141-152. Impact Factor of 0.188

[44] H.A. Christinal, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Thresholding of 2D Im-ages with Cell-like P Systems. Romanian Journal of Information Science and Technology (ROMJIST),13, 2 (2010), 131-140. Impact Factor of 0.188

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Page 4: Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

[45] J.M. Cecilia, J.M. García, G.D. Guerrero, M.A. Martínez, I. Pérez-Hurtado, M.J. Pérez-Jiménez. Sim-ulating a Psystem based e�cient solution to SAT by using GPUs. Journal of Logic and AlgebraicProgramming, 79, 6 (2010), 317-325. Impact Factor of 0.552

[46] J.M. Cecilia, J.M. García, G.D. Guerrero, M.A. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez. Simulation of P systems with Active Membranes on CUDA. Brie�ngs in Bioinformatics, 11,3 (2010), 313-322. Impact Factor of 9.283

[47] L. Pan, M.J. Pérez-Jiménez. Computational complexity of tissue-like P systems. Journal of Complexity,26, 3 (2010), 296-315. Impact Factor of 0.781

[48] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A Linear Time Solution tothe Partition Problem in a Cellular Tissue-Like Model. Journal of Computational and TheoreticalNanoscience, 7, 5 (2010), 884-889. Impact Factor of 0.843

[49] F. Manea, M. Margenstern, V. Mitrana, M.J. Pérez-Jiménez. A New Characterization of NP, P andPSPACE with Accepting Hybrid Networks of Evolutionary Processors. Theory of Computing Systems,46 (2010), 174-192. Impact Factor of 0.600

[50] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. On the E�ciency of Cell-Likeand Tissue-Like Recognizing Membrane Systems. International Journal of Intelligent Systems, 24 (2009)747-765. Impact Factor of 1.194

[51] M. García-Quismondo, R. Gutiérrez-Escudero, M.A. Martínez-del-Amor, E. Orejuela-Pinedo, I. Pérez-Hurtado. P-Lingua 2.0: A software framework for cell-like P systems, International Journal of Comput-ers, Communications and Control, Vol. IV, 3 (2009), 234-243. 133. Impact Factor of 0.373

[52] G. Ciobanu, S. Marcus, Gh. Paun. New strategies of using the rules of a P system in a maximal way.Power and complexity. Romanian Journal of Information Science and Technology, 12 (2009), 157-173.Impact Factor of 0.075

[53] L. Pan, Gh. Paun. Spiking neural P systems with anti-spikes, International Journal of Computers,Communications and Control, Vol. IV, 3 (2009), 273-282. Impact Factor of 0.373

[54] M. Cavaliere, E. Egecioglu, O.H. Ibarra, M. Ionescu, Gh. Paun, S. Woodworth. Asynchronous spikingneural P systems. Theoretical Computer Science, 410, 24-25 (2009), 2352-2364. Impact Factor of 0.943

[55] F.J. Romero, J. Twycross, M. Camara, M. Bennett, M. Gheorghe, N. Krasnogor. Modular Assemblyof Cell Systems Biology Models Using P systems, International Journal of Foundations of ComputerScience, 20 (2009) 427-442. Impact Factor of 0.512

[56] N. Busi, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. E�cient Computation in Rational-Valued PSystems. Mathematical Structures in Computer Science, 19 (2009) 1125-1139. Impact Factor of 0.838

[57] C. Graciani, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. An Approach to Ballistic Deposition Basedon Membrane Computing. International Journal of Unconventional Computing, 5, 5 (2009), 427-439.Impact Factor of 0.684

[58] Gh. Paun, M.J. Pérez-Jiménez. Foreword. Special Issue: Membrane Computing. Fifth BrainstormingWeek on Membrane Computing. International Journal of Unconventional Computing, 5, 5 (2009), 389-390. Impact Factor of 0.684

[59] C. Zandron; A. Leporati; C. Ferretti; G. Mauri; M.J. Pérez Jiménez. On the computational e�ciency ofpolarizationless recognizer P systems with strong division and dissolution. Fundamenta Informaticae,87, 1 (2008), 79-91. Impact Factor of 0.715

[60] Gh. Paun. Membrane computing and brane calculi. Old, New, and Future Bridges. Theoretical ComputerScience, 404 (2008), 19-25. Impact Factor of 0.806

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[61] E. Csuhaj-Varju, Gh. Paun, G. Vaszil. Tissue-like P systems with dynamically emerging requests. In-ternational Journal of Foundations of Computer Science, 19 (2008), 729-745. Impact Factor of 0.554

[62] Gh. Paun, M.J. Pérez-Jiménez. Special Issue on Membrane Computing. Preface. Fundamenta Informat-icae, 87 (2008), 1-2. Impact Factor of 0.715

[63] F.J. Romero, M.J. Pérez-Jiménez. A model of the Quorum Sensing System in Vibrio Fischeri using Psystems. Arti�cial Life, 14, 1 (2008), 95-109. Impact Factor of 1.164

[64] F.J. Romero, M.J. Pérez-Jiménez. Modelling gene expression control using P systems: The Lac Operon,a case study. BioSystems, 91, 3 (2008), 438-457. Impact Factor of 1.477

[65] R. Brijder, M. Cavaliere, A. Riscos, G. Rozenberg, D. Sburlan. Membrane Systems with Proteins Em-bedded in Membranes. Theoretical Computer Science, 404, 1-2 (2008), 26-39. Impact Factor of 0.806

[66] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A uniform family of tissue Psystems with cell division solving 3-COL in a linear time. Theoretical Computer Science, 404, 1-2 (2008),76-87. Impact Factor of 0.806

[67] E. Csuhaj-Varju, A. Di Nola, Gh. Paun, M.J. Pérez-Jiménez, G. Vaszil. Editing con�gurations of Psystems. Fundamenta Informaticae, 82, 1-2 (2008), 29-46. Impact Factor of 0.715

[68] Gh. Paun, M.J. Pérez-Jiménez, T. Yokomori. Representations and characterizations of languages inChomsky hierarchy by means of insertion-deletion systems. International Journal of Foundations ofComputer Science, 19, 4 (2008), 859-871. Impact Factor of 0.554

[69] F. Manea, M. Margenstern, V. Mitrana, M.J.Pérez-Jiménez. A new characterization of NP, P, andPSPACE with accepting hybrid networks of evolutionary processors. Theory of Computing Systems, 46,2 (2008), 174-192. Impact Factor of 0.766

[70] M. Ionescu, Gh. Paun; T. Yokomori. Spiking neural P systems with an exhaustive use of rules. Inter-national Journal of Unconventional Computing, 3 (2007), 135-153. Impact Factor of 0.648.

[71] M. Cardona; M.A. Colomer; M.J. Pérez-Jiménez. Hierarchical clustering with Membrane Computing.Computing and Informatics, 27 (2008), 497-513. Impact Factor of 0.492

[72] Gh. Paun. Spiking neural P systems with astrocyte-like control. Journal of Universal Computer Science,13 (2007), 1707-1721. Impact Factor of 0.315

[73] Gh. Paun, M.J. Pérez-Jiménez, Gr. Rozenberg. Computing morphisms by spiking neural P systems.International Journal of Foundations of Computer Science, 18, 6 (2007), 1371-1382. Impact Factor of0.656

[74] G. Ciobanu, L. Pan, Gh. Paun, M.J. Pérez-Jiménez. P systems with minimal parallelism. TheoreticalComputer Science, 378, 1 (2007), 117-130. Impact Factor of 0.735

[75] Gh. Paun, M.J. Pérez-Jiménez, A. Salomaa. Spiking neural P systems: An early survey. InternationalJournal of Foundations of Computer Science, 18, 3 (2007), 435-455. Impact Factor of 0.656

[76] F.J. Romero, M. Gheorghe, G. Ciobanu, J.M. Auld, M.J. Pérez-Jiménez. Cellular modelling using Psystems and process algebra. Progress in Natural Science, 17, 4 (2007), 375-383. Impact Factor of 0.508

[77] S. Cheruku, A. Paun, F.J. Romero, M.J. Pérez-Jiménez, O.H. Ibarra. Simulating FAS-induced apoptosisby using P systems. Progress in Natural Science, 17, 4 (2007), 424-431. Impact Factor of 0.508

[78] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. How to express tumours usingmembrane systems. Progress in Natural Science, 17, 4 (2007), 449-457. Impact Factor of 0.508

[79] H. Chen, R. Freund, M. Ionescu, Gh. Paun, M.J. Pérez-Jiménez. On string languages generated bySpiking Neural P systems. Fundamenta Informaticae, 75, 1-4 (2007), 141-162. Impact Factor of 0.693

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[80] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. On the degree of parallelism in membranesystems. Theoretical Computer Science, 372, 2-3 (2007), 183-195. Impact Factor of 0.735

[81] Gh. Paun, M.J. Pérez-Jiménez. Editorial. Fourth Brainstorming Week on Membrane Computing. The-oretical Computer Science, 372, 2-3 (2007), 123-124. Impact Factor of 0.735

[82] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F.J. Romero. A uniform solution to SAT using membranecreation. Theoretical Computer Science, 371, 1-2 (2007), 54-61. Impact Factor of 0.735

[83] A. Paun, Gh. Paun. Small universal spiking neural P systems. BioSystems, 90 (2007), 48-60. ImpactFactor of 1.646

[84] O. Ibarra, A. Paun, Gh. Paun, A. Rodriguez-Paton, P. Sosik, S. Woodworth. Normal forms for spikingneural P systems. Theoretical Computer Science, 372 (2007), 196-217. Impact Factor of 0.735

[85] E. Csuhaj-Varju, Gh. Paun, G. Vaszil. Grammar systems versus membrane computing: the case of CDgrammar systems. Fundamenta Informaticae, 76 (2007), 271-292. Impact Factor of 0.693

[86] H. Chen, T-O. Ishdorj, Gh. Paun. Computing along the axon. Progress in Natural Science, 17 (2007),417-423. Impact Factor of 0.508

[87] M. Ionescu, Gh. Paun; T. Yokomori. Spiking neural P systems with an exhaustive use of rules. Inter-national Journal of Unconventional Computing, 3 (2007), 135-153. Impact Factor of 0.648

[88] G. Ciobanu, Gh. Paun, Gh. Stefanescu. P Transducers. New Generation Computing, 24 (2006), 1-28.Impact Factor of 0.694

[89] M. Ionescu, Gh. Paun, T. Yokomori. Spiking Neural P Systems. Fundamenta Informaticae, 71 (2006),279- 308. Impact Factor of 0.586

[90] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. Computational e�ciency of dis-solution rules in membrane systems. International Journal of Computer Mathematics, 83, 7 (2006),593-611. Impact Factor of 0.428

[91] A. Alhazov, R. Freund, A. Riscos. Membrane division, restricted membrane creation and object com-plexity in P systems. International Journal of Computer Mathematics, 83, 7 (2006), 529-547. ImpactFactor of 0.428

[92] H. Chen, T-O. Ishdorj, Gh. Paun, M.J. Pérez-Jiménez. Handling languages with spiking neural P systemswith extended rules. Romanian Journal of Information Science and Technology, 9, 3 (2006), 151-162.Impact Factor of 0.154

[93] Gh. Paun, M.J. Pérez-Jiménez, Gr. Rozenberg. Spike trains in spiking neural P systems. InternationalJournal of Foundations of Computer Science, 17, 4 (2006), 975-1002. Impact Factor of 0.500

[94] Gh. Paun, M.J. Pérez-Jiménez. Membrane Computing: Brief introduction, recent results and applica-tions. BioSystems, 85, 1 (2006), 11-22. Impact Factor of 1.080

[95] G. Ciobanu, Gh. Paun, M.J. Pérez-Jiménez. On the branching complexity of P systems. FundamentaInformaticae, 73, 1-2 (2006), 27-36. Impact Factor of 0.586

[96] Gh. Paun, M.J. Pérez-Jiménez. Preface. Special Issue Membrane Computing. International Journal ofFoundations of Computer Science, 17, 1 (2006), 1-2. Impact Factor of 0.500

[97] R. Ceterchi, M.J. Pérez-Jiménez. On simulating a class of parallel architectures. International Journalof Foundations of Computer Science, 17, 1 (2006), 91-110. Impact Factor of 0.500

[98] A. Leporati, C. Zandron, M.A. Gutiérrez-Naranjo. P systems with input in binary form. InternationalJournal of Foundations of Computer Science, 17, 1 (2006), 127-146. Impact Factor of 0.500

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[99] Gh. Paun, R. Paun. Membrane computing and economics: numerical P systems. Fundamenta Informat-icae, 73 (2006), 213-227. Impact Factor of 0.586

[100] O. Ibarra, Gh. Paun. Characterizations of context-sensitive languages and other language classes interms of Symport/Antiport P systems. Theoretical Computer Science, 358 (2006), 88-103. Impact Factorof 0.843

[101] L. Cardelli, Gh. Paun. An universality result for a membrane calculus based on mate/drip operations.International Journal of Foundations of Computer Science, 17 (2006), 49-68. Impact Factor of 0.500

[102] M. Margenstern, Gh. Paun, Y. Rogozhin, S. Verlan. Context-free insertion-deletion systems. TheoreticalComputer Science, 330 (2005), 339-348. Impact Factor of 0.743

[103] M.A. Gutiérrez-Naranjo, M.J. Pérez Jiménez, A. Riscos N. A fast P system for �nding a balanced2-partition. Soft Computing, 9, 9 (2005), 673-678. Impact Factor of 0.538

[104] M.J. Pérez�Jiménez, A. Riscos N. Solving the Subset-Sum problem by P systems with active mem-branes. New Generation Computing, 23, 4 (2005), 339-356. Impact Factor of 0.500

[105] Gh. Paun, M.J. Pérez-Jiménez, J. Pazos, A. Rodríguez-Patón. Symport/antiport P systems with threeobjects are universal. Fundamenta Informaticae, 64 (2005), 345-358. Impact Factor of 0.650

[106] R. Freund, Gh. Paun, M.J. Pérez-Jiménez. Tissue-like P systems with channel-states. TheoreticalComputer Science, 330 (2005), 101-116. Impact Factor of 0.743

[107] Gh. Paun, M.J. Pérez-Jiménez, F. Sancho. On the reachability problem for P systems with sym-port/antiport. Publicationes Mathematicae-Debrecen, 65 (2004), 603-627. Impact Factor of 0.236

[108] Gh. Paun, M.J. Pérez-Jiménez. Foreword. Second Brainstorming Week on Membrane Computing.Special Issue. Journal of Universal Computer Science, 10, 5 (2004), 449-501. Impact Factor of 0.398

[109] M.J. Pérez-Jiménez, F.J. Romero. An e�cient family of P systems for packing items into bins. Journalof Universal Computer Science, 10, 5 (2004), 650-670. Impact Factor of 0.398

[110] A. Cordón, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F. Sancho. A Prolog simulator for deter-ministic P systems with active membranes. New Generation Computing, 22, 4 (2004), 349-363. ImpactFactor of 0.854

[111] C.S. Calude, Gh. Paun. Bio-steps beyond Turing. BioSystems, 77 (2004), 175-194. Impact Factor of1.016

[112] Gh. Paun, Y. Suzuki, H. Tanaka, T. Yokomori. On the power of membrane division in P systems.Theoretical Computer Science, 324 (2004), 61-85. Impact Factor of 0.676

[113] R. Freund, C. Martin-Vide, Gh. Paun. From regulated rewriting to computing with membranes: threecollapsing hierarchies. Theoretical Computer Science, 312 (2004), 143-188. Impact Factor of 0.676

[114] R. Freund, J. Kelemen, Gh. Paun. A note on emergence in multi-agent string processing systems.Computing and Informatics, 22 (2003), 623- 637. Impact Factor of 0.456

[115] A. Obtulowicz, Gh. Paun. (In search of) Probabilistic P systems. BioSystems, 70 (2003), 107-121.Impact Factor of 0.971

[116] E. Csuhaj-Varju, Gh. Paun, G. Vaszil. PC grammar systems with �ve context-free component scan gen-erate all recursively enumerable languages. Theoretical Computer Science, 299 (2003), 785-794. ImpactFactor of 0.764

[117] Martin-Vide, Gh. Paun, J. Pazos, A. Rodriguez-Paton. Tissue P systems. Theoretical Computer Sci-ence, 296 (2003), 295-326. Impact Factor of 0.764

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[118] C. Ferretti, G. Mauri, Gh. Paun, C. Zandron. On three variants of rewriting P systems. TheoreticalComputer Science, 301 (2003), 201-215. Impact Factor of 0.764

[119] D. Besozzi, G. Mauri, Gh. Paun, C. Zandron. Gemmating P systems: Collapsing hierarchies. Theoret-ical Computer Science, 296 (2003), 253-267. Impact Factor of 0.764

[120] M.J. Pérez-Jiménez, F. Sancho. A formalization of transition P systems. Fundamenta Informaticae,49, 1-3 (2002), 261-272. Impact Factor of 0.650

[121] A. Romero, M.J. Pérez-Jiménez. Simulating Turing Machines by P systems with External Output.Fundamenta Informaticae, 49, 1-3 (2002), 273-287. Impact Factor of 0.650

[122] A. Paun, Gh. Paun, G. Rozenberg. Computing by communication in networks of membranes. Inter-national Journal of Foundations of Computer Science, 13 (2002), 779-798. Impact Factor of 0.512

[123] C. Martin-Vide, A. Paun, Gh. Paun. On the power of P systems with symport rules. Journal ofUniversal Computer Science, 8 (2002), 317-331. Impact Factor of 0.398

[124] F. Arroyo, A. Baranda, J. Castellanos, Gh. Paun. Membrane computing: The power of (rule) creation.Journal of Universal Computer Science, 9 (2002), 369-381. Impact Factor of 0.398

[125] A. Paun, Gh. Paun. The power of communication. P systems with symport/antiport. New GenerationComputing, 20 (2002), 295-306. Impact Factor of 0.386

[126] C. Martin-Vide, Gh. Paun, G. Rozenberg. Membrane systems with carriers. Theoretical ComputerScience, 270 (2002), 779-796. Impact Factor of 0.417

[127] M. Amos, Gh. Paun, G. Rozenberg, A. Salomaa. Topics in the theory of DNA computing. TheoreticalComputer Science, 287 (2002), 3-38. Impact Factor of 0.417

[128] Gh. Paun, G. Rozenberg. A guide to membrane computing. Theoretical Computer Science, 287 (2002),73-100. Impact Factor of 0.417

[129] P. Bottoni, C. Martin-Vide, Gh. Paun, G. Rozenberg. Membrane systems with promoters/inhibitors.Acta Informatica, 38 (2002), 695-720. Impact Factor of 0.604

[130] Gh. Paun, N. Santean, G. Thierrin, S. Yu. On the robustness of primitive words. Discrete AppliedMathematics, 117 (2002), 233-252. Impact Factor of 0.471

[131] Gh. Paun, Y. Sakakibara, T. Yokomori. P systems on graphs of restricted forms. Publicationes Math-ematicae Debrecen, 60 (2002), 635-660. Impact Factor of 0.153

[132] C. Martin-Vide, A. Paun, Gh. Paun, G. Rozenberg. Membrane systems with couples transport: Uni-versality and normal forms. Fundamenta Informaticae, 49 (2002), 1-15. Impact Factor of 0.650

[133] S. Kobayashi, V. Mitrana, Gh. Paun, G. Rozenberg. Formal properties of PA-matching. TheoreticalComputer Science, 262 (2001), 117-131. Impact Factor of 0.468

[134] S. Kobayashi, V. Mitrana, Gh. Paun, G. Rozenberg. Computing with membranes (P systems). BioSys-tems, 59 (2001), 139-158. Impact Factor of 0.736

[135] Gh. Paun, Y. Suzuki, H. Tanaka. P systems with energy accounting. International Journal of ComputerMathematics, 78 (2001), 343-364. Impact Factor of 0.162

[136] Gh. Paun, G. Rozenberg, T. Yokomori. Hairpin languages. International Journal of Foundations ofComputer Science, 12 (2001), 837-847. Impact Factor of 0.512

[137] J. Dassow, Gh. Paun, G. Thierrin, S. Yu. Tree-systems of morphisms. Acta Informatica, 38 (2001),131-153. Impact Factor of 0.512

[138] P. Bottoni, G. Mauri, P. Mussio, Gh. Paun. Computing with shapes. Journal of Visual Languages andComputing, 12 (2001), 601-626. Impact Factor of 0.431

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[139] C.S. Calude, Gh. Paun, M. Tataram. A glimpse into natural computing. Journal of Multi-valuate Logic,7 (2001), 1-128.

[140] Gh. Paun. Computing with membranes (P systems): A variant. International Journal of Foundationsof Computer Science, 11 (2001), 167-181. Impact Factor of 0.512

[141] J. Dassow, C. Martin-Vide, Gh. Paun, A. Rodriguez-Paton. Conditional concatenation. FundamentaInformaticae, 44, (2000), 353-372, 2000. Impact Factor of 0.650

[142] Gh. Paun, G. Rozenberg, A. Salomaa. Membrane computing with external output. Fundamenta Infor-maticae, 41 (2000), 313-340. Impact Factor of 0.650

[143] L. Ilie, Gh. Paun, G. Rozenberg, A. Salomaa. On strongly context-free languages. Discrete AppliedMathematics, 103 (2000), 153-165. Impact Factor of 0.339

[144] C.S. Calude, Gh. Paun. Computing with cells and atoms in a nutshell. Complexity, 6 (2000), 38-48.Impact Factor of 1.020

[145] P. Bottoni, G. Mauri, P. Mussio, Gh. Paun. On the power of pictorial languages. International Journalof Pattern Recognition and Arti�cial Intelligence, 14 (2000), 839-858. Impact Factor of 0.310

[146] Gh. Paun. Computing with membranes. Journal of Computer and System Sciences, 61 (2000), 108-143.Impact Factor of 0.664

[147] Gh. Paun. DNA computing based on splicing. Universality results. Theoretical Computer Science, 231(2000), 275-296. Impact Factor of 0.806

[148] J. Kelemen, Gh. Paun. Robustness of decentralized knowledge systems: A grammar-theoretic view.Journal of Experimental and Theoretical Arti�cial Intelligence, 12, (2000), 91-100.

[149] Gh. Paun, T. Yokomori. Simulating H systems by P systems. Journal of Universal Computer Science,6, 1 (2000), 178-193. Impact Factor of 0.398

Publications in other Journals (including LNCS).

References

[1] H.A. Christinal, D. Díaz-Pernil, P. Real, E.S. Selvan. Color Segmentation of 2D Images with Thresh-olding. Communications in Computer and Information Science, 305, (2012), 162�169.

[2] M.A. Martínez-del-Amor, I. Pérez-Hurtado, M. García-Quismondo, L.F. Macías-Ramos, L. Valencia-Cabrera, A. Romero-Jiménez, C. Graciani-Díaz, A. Riscos-Núñez, M.A. Colomer, M.J. Pérez-JiménezDCBA: Simulating population dynamics P systems with proportional objects distribution. MembraneComputing- 13th International Conference CMC 2012 Budapest, Hungary, August 28-31, 2012, RevisedSelected Papers. Lecture Notes in Computer Science, 7762 (2013), 257-276.

[3] L.F. Macías-Ramos, M.J. Pérez-Jiménez, A. Riscos-Núñez, M. Rius The e�ciency of tissue P systemswith cell separation relies on the environment. Membrane Computing- 13th International ConferenceCMC 2012 Budapest, Hungary, August 28-31, 2012, Revised Selected Papers. Lecture Notes in ComputerScience, 7762 (2013), 243-256.

[4] L.F. Macías-Ramos, M.J. Pérez-Jiménez. Spiking Neural P systems with functional astrocytes. Mem-brane Computing- 13th International Conference CMC 2012 Budapest, Hungary, August 28-31, 2012,Revised Selected Papers. Lecture Notes in Computer Science, 7762 (2013), 228-242

[5] H.A. Christinal, D. Díaz-Pernil, M.A. Gutiérrez Naranjo, P. Real. Using Membrane Computing forE�ective Homology. Applicable Algebra in Engineering, Communication and Computing, 23, 5-6 (2012),233-249.

9

Page 10: Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

[6] Gh. Paun. Towards Fypercomputations (in Membrane Computing). Lecture Notes in Computer Science,7300 (2012), 207-220.

[7] M.A. Martínez-del-Amor, I. Pérez-Hurtado, A. Gastalver-Rubio, A.C. Elster, M.J. Pérez-Jiménez. Pop-ulation Dynamics P Systems on CUDA. Computational Methods in Systems Biology. Lecture Notes inComputer Science, 7605 (2012), 247-266.

[8] S. Stepney, S. Abramsky, M. Bechmann, J. Gorecki, V. Kendon, T.J. Naughton, Mario J. Pérez-Jiménez,F.J. Romero-Campero, A. Sebald. Heterotic Computing Examples with Optics, Bacteria, and Chemi-cals. Unconventional Computation and Natural Computation. Lecture Notes in Computer Science, 7445(2012), 198-209.

[9] D. Díaz-Pernil, M.A. Gutiérrez Naranjo, H., Molina-Abril, P. Real, Designing a New Software Tool forDigital Imagery Based on P Systems. Natural Computing, 11, (2012), 381-386.

[10] F. Peña-Cantillana, A. Berciano, D. Díaz-Pernil, M.A. Gutiérrez Naranjo. Parallel Skeletonizing ofDigital Imagery by Using Cellular Automata Lecture Notes in Computer Science, 7309 (2012), 39-48.

[11] Gh. Paun, M.J. Pérez-Jiménez. Languages and P systems: Recent developments. Computer ScienceJournal of Moldova, 20, 2 (2012), 72-92.

[12] A. Nagar, Gh. Paun: Foreword. Natural Computing, 11, 3 (2012), 351-352.

[13] Gh. Paun, M.J. Pérez-Jiménez. dP automata versus right-linear simple matrix grammars. Computation,Physics and Beyond. Dedicated to Cristian S. Calude on the ocassion of his 60th Birthday. Lecture Notesin Computer Science, 7160 (2012), 376-387.

[14] A Spiking Neural P System Simulator Based on CUDA, F. Cabarle, H. Adorna, M.A. Martínez-del-Amor, Lecture Notes in Computer Science, 7184, (2012), 87-103.

[15] M. Gheorghe, Gh. Paun, G. Rozenberg, S. Verlan. Preface. Proceedings of the 12th International Confer-ence on Membrane Computing (CMC12), Membrane Computing, 12th International Conference, CMC2011, Fontainebleau, France, August 23-26, 2011, Revised Selected Papers. Lecture Notes in ComputerScience, 7184 (2012), V-VI.

[16] L.F. Macías-Ramos, I. Pérez-Hurtado, M. García-Quismondo, L. Valencia, M.J. Pérez-Jiménez, A.Riscos-Núñez. A P-Lingua based simulator for Spiking Neural P systems. Membrane Computing, 12thInternational Conference, CMC 2011, Fontainebleau, France, August 23-26, 2011, Revised SelectedPapers. Lecture Notes in Computer Science, 7184 (2012), 257-281.

[17] X. Zhang, Y. Niu, L. Pan, M.J. Pérez-Jiménez. Linear Time Solution to Prime Factorization by TissueP Systems with Cell Division. International Journal of Natural Computing Research, 2, 3 (2011), 49-60

[18] F. Ipate, R. Lefticaru, I. Pérez-Hurtado, M.J. Pérez-Jiménez, C. Tudose. Formal veri�cation of P systemswith active membranes through model checking. Membrane Computing, 12th International Conference,CMC 2011, Fontainebleau, France, August 23-26, 2011, Revised Selected Papers. Lecture Notes in Com-puter Science, 7184 (2012), 215-225

[19] X. Zhang, Y. Niu, L. Pan, M.J. Pérez-Jiménez. Linear time solution to prime factorization by tissue Psystems with cell division. International Journal of Natural Computing Research, 2, 3 (2011), 49-60.

[20] P. Frisco, Gh. Paun, M.J. Pérez-Jiménez. Guest Editorial Preface. Special Issue on Membrane Comput-ing. International Journal of Natural Computing Research, 2, 2 (2011), i-iii.

[21] M.A. Gutiérrez, M.J. Pérez-Jiménez. Local search with P systems: A case study. International Journalof Natural Computing Research, 2, 2 (2011), 47-55.

[22] F. Cabarle, H. Adorna, M.A. Martínez-del-Amor, M.J. Pérez-Jiménez. Spiking Neural P System Simu-lations on a High Performance GPU Platform. Lecture Notes in Computer Science, 7017 (2011), 99-108.

10

Page 11: Publications of the Research Group on Natural Computing ...The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology. Bioinformatics

[23] R. Barbuti, G. Franco, Gheorghe Paun. Foreword. Natural Computing, 10, 1 (2011). 1-2.

[24] M.A. Colomer, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos-Núñez. Comparing Simulation Al-gorithms for multienvironmental probabilistic P systems over a standard virtual ecosystem. NaturalComputing, 11 (2012), 369-379.

[25] P. Frisco, Gh. Paun, M.J. Pérez-Jiménez. Guest Editorial Preface. Special Issue on Membrane Comput-ing. International Journal on Natural Computing Research, 2, 2 (2011), i-iii.

[26] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Local Search with P systems: A Case Study. InternationalJournal on Natural Computing Research, 2, 2 (2011), 47-55.

[27] F. Cabarle, H. Adorna, M.A. Martínez-del-Amor. Simulating Spiking Neural P Systems Without DelaysUsing GPUs. International Journal on Natural Computing Research, 2, 2 (2011), 19-31.

[28] S. Ivanov, A. Alhazov, V. Rogojin, M.A. Gutiérrez-Naranjo. Forward and Backward Chaining with PSystems. International Journal on Natural Computing Research, 2, 2 (2011), 56-66.

[29] F. Peña-Cantillana, D. Díaz-Pernil, A. Christinal-Hepzibah, M.A. Gutiérrez-Naranjo. Implementationon CUDA of the Smoothing Problem with Tissue-Like P Systems. International Journal on NaturalComputing Research, 2, 3 (2011), 25-34.

[30] F. Peña-Cantillana, D. Díaz-Pernil, A. Berciano, M.A. Gutiérrez Naranjo. A Parallel Implementationof the Thresholding Problem by Using Tissue-Like P System. Lecture Notes in Computer Science, 6855(2011), 277-284.

[31] M. Ionescu, Gh. Paun. Notes about spiking neural P systems. Annals of Bucharest Univ. Mathematics-Informatics Series. 2011.

[32] Gh. Paun, Membrane computing at twelve years. Back to Turku. Lecture Notes in Computer Science,6714 (2011), 36-37.

[33] E. Rivero-Gil, M.A. Gutiérrez-Naranjo, A. Romero-Jiménez, A. Riscos-Núñez. A Software Tool forGenerating Graphics by Means of P Systems. Natural Computing, 10, 2 (2011), p. 879-890.

[34] M.J. Pérez-Jiménez, A. Ortega, José M. Sempere. The Spanish Network on Biomolecular and BiocellularComputing: Bio-inspired Natural Computing in Spain. ERCIM (European Research Consortium forInformatics and Mathematics) News, 85, (2011), 25.

[35] J.M. Cecilia, J.M. García, G.D. Guerrero, M.A. Martínez-del-Amor, M.J. Pérez-Jiménez, M. Ujaldón.The GPU on the simulation of cellular computing models. Soft Computing, 16, 2 (2012), 231-246.

[36] Gh. Paun, M.J. Pérez-Jiménez. P and dP Automata: a Survey. Lecture Notes in Computer Science,6570 (2011), 102-115.

[37] M.J. Pérez-Jiménez, I. Pérez-Hurtado, A. Riscos-Núñez, F.J. Romero-Campero. Membrane Computing(Tutorial). Lecture Notes in Computer Science, 6714 (2011), 38-39.

[38] M. Gheorghe, T. Hinze, Gh. Paun, G. Rozenberg, A. Salomaa.Membrane Computing 11th InternationalConference, CMC 2010, Jena, Germany, August 24-27, 2010. Revised Selected Papers. Preface. LectureNotes in Computer Science, 6501 (2011), v-vi.

[39] Gh. Paun. Membrane Computing at Twelve Years. Lecture Notes in Computer Science, 6501 (2011),1-2.

[40] M.A. Colomer, S. Lavín, I. Marco, A. Margalida, I. Pérez-Hurtado, M.J. Pérez-Jiménez, D. Sanuy,E. Serrano, L. Valencia-Cabrera. Modeling population growth of Pyrenean Chamois (Rupicapra p.pyrenaica) by using P systems. Lecture Notes in Computer Science, 6501 (2011), 144-159.

[41] X. Zeng, H. Adorna, M.A. Martínez-del-Amor, L. Pan, M.J. Pérez-Jiménez. Matrix representation ofSpiking Neural P systems. Lecture Notes in Computer Science, 6501 (2011), 377-392.

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[42] M.A. Gutiérrez M.J. Pérez-Jiménez. Depth-First search with P systems. Lecture Notes in ComputerScience, 6501 (2011), 257-267.

[43] M. Gheorghe, V. Manca, F.J. Romero-Campero: Deterministic and stochastic P systems for modellingcellular processes. Natural Computing, 9, 2 (2010), 457-473. 117.

[44] J. Smaldon, F.J. Romero-Campero, F. Fernández Trillo, M. Gheorghe, C. Alexander, N. Krasnogor. Acomputational study of liposome logic: towards cellular computing from the bottom up. Systems andSynthetic Biology, 4, 3 (2010), 7-79.

[45] P. Milazzo, M.J. Pérez-Jiménez. Preface. Proceedings First Workshop on Applications of Membranecomputing, Concurrency and Agent-based modelling in POPulation biology. Electronic Proceedings inTheoretical Computer Science, 33 (2010).

[46] E. Rivero-Gil, M.A. Gutiérrez-Naranjo, A. Romero, A. Riscos. A Software Tool for Generating Graphicsby Means of P Systems. Natural Computing, 10, 2 (2010), 879-890.

[47] P. Bonizzoni, Gh. Paun, G. Rozenberg, C. Zandron. Preface. Natural Computing, 9, 2 (2010), 381-382.

[48] R. Freund, M. Kogler, Gh. Paun, M.J. Perez-Jimenez: On the power of P and dP automata. Annals ofthe University of Bucharest Mathematics-Informatics Series, 2010, LVIII (2009), 1-22.

[49] M. Cardona, M. Colomer, A. Margalida, I. Pérez-Hurtado, M.J. Pérez-Jiménez, D. Sanuy. A P systemBased Model of an Ecosystem of Some Scavenger Birds. Membrane Computing. 10th InternationalWorkshop, WMC 2009. Lecture Notes in Computer Science, 5957 (2010), 182-195.

[50] M. Cardona, M.A. Colomer, A. Margalida, A. Palau, I. Pérez-Hurtado, M.J. Pérez-Jiménez, D. Sanuy.A computational modeling for real ecosystems based on P systems. Natural Computing, 10, 1 (2011),39-53.

[51] M. García-Quismondo, R. Gutiérrez-Escudero, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos-Núñez.An Overview of P-Lingua 2.0, 10th International Workshop, WMC 2009. Lecture Notes in ComputerScience, 5957 (2010), 264-288.

[52] O.H. Ibarra, M.J. Pérez-Jiménez, T. Yokomori. On Spiking Neural P systems, Natural Computing, 9, 2(2010), 475-491.

[53] H. Cao, F.J. Romero-Campero, S. Heeb, M. Camara, N. Krasnogor. Evolving Cell Models for Systemsand Synthetic Biology. Systems and Synthetic Biology, 4, 1 (2010), 55-84.

[54] J.M. Cecilia, J.M. García, G. Guerrero, M. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez.Implementing P systems Parallelism by means of GPUs, 10th International Workshop, WMC 2009.Lecture Notes in Computer Science, 5957 (2010), 227-241.

[55] A. Riscos-Núñez. A framework for complexity classes in membrane computing, Electronic Notes inTheoretical Computer Science, Vol. 225 (2009), p. 319-328.

[56] A. Leporati, C. Ferretti, G. Mauri, M.J. Pérez-Jiménez, C. Zandron. Complexity Aspects of Polariza-tionless Membrane Systems, Natural Computing, 8 (2009), 703-717.

[57] D. Diaz, A. Romero, M.J. Pérez-Jiménez. E�cient Simulation of Tissue-like P systems by TransitionCell-like P systems, Natural Computing, 8 (2009), 797-806.

[58] M.A. Gutiérrez-Naranjo, A. Leporati. First steps towards a CPU made of Spiking Neural P systems.International Journal of Computers, Communication and Control, 4, 3 (2009), 244-252.

[59] D. Woods, N. Murphy, M.J. Pérez-Jiménez, A. Riscos-Núñez. Membrane Dissolution and Division in P.Lecture Notes in Computer Science, 5715 (2009), 262-276.

[60] M. Cardona, M. Colomer, A. Riscos, M. Rius. P Systems Computing the Period of Irreducible MarkovChains, International Journal of Computers, Communications and Control, 4 (2009), 291-300.

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[61] A. Leporati, G. Mauri, C. Zandron, G. Paun, M.J. Pérez-Jiménez. Uniform Solutions to SAT andSUBSET SUM by Spiking Neural P Systems, Natural Computing, 8 (2009), 681-702.

[62] D. Díaz, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos-Núñez. A P-Lingua programming environmentfor Membrane Computing. Membrane Computing. 9th International Workshop WMC 2008. LectureNotes in Computer Science, 5391 (2009), 187-203.

[63] D. Díaz-Pernil, P. Gallego-Ortiz, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos-Núñez. De-scriptional complexity of tissue-like P systems with cell division. 8th International Conference on Un-conventional Computation. Lecture Notes in Computer Science, Vol. 5715, (2009), 168-178.

[64] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos-Núñez. Solving the IndependentSet problem by using tissue-like P systems with cell division. 3rd International Work-Conference on theInterplay Between Natural and Arti�cial Computation. Lecture Notes in Computer Science, Vol. 5601,(2009), 213-222.

[65] F.J. Romero-Campero, J. Twycross, C. Hongqing, J. Blakes, N. Krasnogor. A multiscale modellingframework based on P systems. Membrane Computing. 9th International Workshop WMC 2008, LectureNotes in Computer Science, 5391 (2009), 63-77

[66] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Hebbian learning from spiking neural P systems view.Membrane Computing. 9th International Workshop WMC 2008, Lecture Notes in Computer Science,5391 (2009), 217-230.

[67] M. Cardona, M.A. Colomer, M.J. Pérez-Jiménez, D. Sanuy, A. Margalida. Modeling ecosystem using Psystems: The bearded vulture, a case study. Membrane Computing. 9th International Workshop WMC2008, Lecture Notes in Computer Science, 5391 (2009), 137-156.

[68] H. Chen, M. Ionescu, T.-O. Ishdorj, A. Paun, Gh. Paun, M.J. Pérez-Jiménez Spiking Neural P systemswith extended rules: universality and languages. Natural Computing, 7, 2 (2008), 147-166.

[69] Gh. Paun, M.J. Pérez-Jiménez, A. Riscos. Tissue P systems with cell division. International Journal ofComputers, Communications and Control, 3, 3 (2008), 295-303.

[70] M. Cardona, M. Colomer, A. Riscos, M. Rius. Computing the Period of Irreducible Markov Chains.International Journal of Computers, Communication and Control, 4, 3 (2008), 291-300.

[71] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, D. Ramírez. A software tool for veri�cation of spikingneural P systems. Natural Computing, 7, 4 (2008), 485-497. 155.

[72] A. Leporati, G. Mauri, C. Ferretti, M.J. Pérez Jiménez, C. Zandron. Complexity aspects of polariza-tionless membrane systems. Natural Computing, 8, 4 (2008), 703-717.

[73] A. Leporati, G. Mauri, C. Zandron, Gh. Paun, M.J. Pérez-Jiménez. Uniform solutions to SAT andSubset Sum by spiking neural P systems. Natural Computing, 8, 4 (2008), 681-702.

[74] D. Díaz-Pernil, M.J. Pérez Jiménez, A. Romero. E�cient simulation of tissue-like P systems by transitioncell-like P systems. Natural Computing, 8, 4 (2008), 797-806.

[75] Gh. Paun. Natural Computing. Between Necessity and Fashion. International Journal of Computers,Communication and Control, Vol. III, 3 (2008), 119-120.

[76] C.S. Calude, Gh. Paun. Foreword, Natural Computing, 7(1), 1 (2008), 1.

[77] M. Ionescu, Gh. Paun, T. Yokomori: Preface. Natural Computing, 7, 4 (2008), 451-452.

[78] Gh. Paun. Bibliography of spiking neural P systems. Natural Computing, 7, 4 (2008), 551-553.

[79] O. Ibarra, Gh. Paun. Membrane computing: a general view. Annals of European Academy of Sciences,2008, 83-101.

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[80] Gh. Paun; M.J. Pérez Jiménez; A. Riscos. Tissue P systems with cell division. International Journal ofComputers, Communications and Control, 3, 3 (2008).

[81] A. Romero, M.J. Pérez Jiménez, D. Díaz. E�cient Simulation of Tissue-like P Systems by TransitionCell-like P Systems. Natural Computing, 8(4) (2008), 1-10.

[82] E. Csuhaj-Varju, Gh. Paun, G. Vaszil. Tissue-like P systems communicating by request. RamanujanMathematical Society. Lecture Notes Series in Mathematics, (2008), 143-154.

[83] Gh. Paun, F.J. Romero Campero. Membrane Computing as a Modeling Framework. Cellular SystemsCase Studies. 8th International School on Formal Methods for the Design of Computer, Communication,and Software. Lecture Notes in Computer Science, Volume 5016, (2008), p.168-214

[84] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, A. Romero. Computationale�ciency of cellular division in tissue-like P systems. Romanian Journal of Information Science andTechnology, 11, 3 (2008), 229-241.

[85] Gh. Paun. A quick overview of membrane computing with details about spiking neural P systems.Frontiers of Computer Science in China, (2007), 37-49.

[86] Gh. Paun. Spiking neural P systems. A tutorial. Bulletin of the European Association for TheoretialComputer Science, 91 (2007), 145-159.

[87] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A linear-time tissue P systembased solution for the 3-coloring problem. Electronic Notes in Theoretical Computer Science, 171 (2007),81-93.

[88] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. Multidimensional descriptional complexity ofP systems. Journal of Automata, Languages and Combinatorics, 12, 1-2 (2007), 167-179.

[89] R. Brijder, M. Cavaliere, A. Riscos, G. Rozenberg, D. Sburlan. Membrane systems with marked mem-branes. Electronic Notes in Theoretical Computer Science, 171 (2007), 25-36.

[90] Gh. Paun. Membrane Computing as a Framework for Bio-Modeling (an Informal Glimpse). AlgebraicBiology: 2nd International Conference. Lecture Notes in Computer Science, 4545 (2007), 23-35.

[91] Gh. Paun. Spiking Neural P Systems. Power and E�ciency. Bio-inspired Modeling of cognitive tasks.Lecture Notes in Computer Science, 4527 (2007), 153-169.

[92] A. Alhazov, M.J. Pérez-Jiménez. Uniform solution of QSAT using polarizationless active membranes.Machines, Computations, and Universality. Lecture Notes in Computer Science, 4664 (2007), 122-133.

[93] R. Ceterchi, M.J. Pérez-Jiménez, A.I. Tomescu. Simulating the bitonic sort using P systems. MembraneComputing. 8th International Workshop WMC 2007. Lecture Notes in Computer Science, 4860 (2007),172-192.

[94] D. Díaz, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A logarithmic bound for solvingSubset Sum with P systems. Membrane Computing. 8th International Workshop WMC 2007. LectureNotes in Computer Science, 4860 (2007), 257-270.

[95] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. Solving Subset-Sum in lineartime by using tissue P systems with cell division. Bio-inspired Modeling of cognitive tasks. Lecture Notesin Computer Science, 4527 (2007), 170-179.

[96] G. Mauri, M.J. Pérez-Jiménez, C. Zandron. On a Paun's conjecture in membrane systems. Bio-inspiredModeling of cognitive tasks. Lecture Notes in Computer Science, 4527 (2007), 180-192.

[97] R. Freund, Gh. Paun, M.J. Pérez-Jiménez. Polarizationless P systems with active membranes workingin the minimally parallel mode. 6th International Conference on Unconventional Computation. LectureNotes in Computer Science, 4618 (2007), 62-76.

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[98] M.J. Pérez-Jiménez, F.J. Romero. P systems, a new computational modelling tool for Systems Biology.Transactions on Computational Systems Biology VI. Lecture Notes in Bioinformatics, 4220 (2006),176-197.

[99] Gh. Paun, M.J. Pérez-Jiménez, A. Salomaa. Bounding the indegree of Spiking Neural P systems. TurkuCenter for Computer Science - TUCS, Report Nr. 773, June 2006.

[100] M.J. Pérez-Jiménez, A. Romero, F. Sancho. A polynomial complexity class in P systems using mem-brane division. Journal of Automata, Languages and Combinatorics, 11, 4 (2006), 423-434.

[101] Gh. Paun, M.J. Pérez-Jiménez (eds.). Selected papers dedicated to Membrane Computing. Editorial.Journal of Automata, Languages and Combinatorics, 11, 3 (2006), 239.

[102] R. Brijder, M. Cavaliere, A. Riscos, G. Rozenberg, D. Sburlan. Communication membrane systemswith active symports. Journal of Automata, Languages and Combinatorics, 11, 3 (2006), 241-262.

[103] Gh. Paun. One More Universality Result for P Systems with Objects on Membranes. InternationalJournal of Computers, Communications and Control, 1 (2006), 25-32.

[104] M. Cavaliere, R. Freund, A. Leistch, Gh. Paun. Event-related outputs of computations in P systems.Journal of Automata, Languages and Combinatorics, 11 (2006), 263-278.

[105] Gh. Paun. Languages in Membrane Computing. Some Details for Spiking Neural P Systems. Devel-opments in Language Theory: 10th International Conference, DLT 2006. Lecture Notes in ComputerScience, 4036 (2006), 20-35.

[106] M. Cardona, M.A. Colomer, M.J. Pérez Jiménez, A. Zaragoza. Handling Markov chains with MembraneComputing. 5th International Conference on Unconventional Computation. Lecture Notes in ComputerScience, 4135 (2006), 72-85.

[107] F. Bernardini, F.J. Romero, M. Gheorghe, M.J. Pérez-Jiménez. A modeling approach based on Psystems with bounded parallelism. Membrane Computing. 7th International Workshop WMC 2006.Lecture Notes in Computer Science, 4361 (2006), 49-65.

[108] N. Busi, M.A. Gutiérrez-Naranjo. A Case Study in (Mem)Brane Computation: Generating n2: n>=1.Membrane Computing. 7th International Workshop WMC 2006. Lecture Notes in Computer Science,4361 (2006), 233-248.

[109] A. Paun, M.J. Pérez-Jiménez, F.J. Romero. Modeling signal transduction using P systems. MembraneComputing. 7th International Workshop WMC 2006. Lecture Notes in Computer Science, 4361 (2006),100-122. 193.

[110] R. Brijder, M. Cavaliere, A. Riscos, G. Rozenberg, D. Sburlan. Membrane systems with externalcontrol. Membrane Computing. 7th International Workshop WMC 2006. Lecture Notes in ComputerScience, 4361 (2006), pp. 215-232.

[111] M. Cardona, M.A. Colomer, M.J. Pérez-Jiménez, A. Zaragoza. Classifying states of a �nite Markovchains with Membrane Computing. Membrane Computing. 7th International Workshop WMC 2006.Lecture Notes in Computer Science, 4361 (2006), 266-278.

[112] F.J. Romero, M. Gheorghe, L. Bianco, D. Pescini,

[113] M.J. Pérez-Jiménez, R. Ceterchi. Towards probabilistic model checking on P systems using PRISM.Membrane Computing. 7th International Workshop WMC 2006. Lecture Notes in Computer Science,4361 (2006), 477-495.

[114] A. Romero, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Graphical modeling of higher plants usingP systems. Membrane Computing. 7th International Workshop WMC 2006. Lecture Notes in ComputerScience, 4361 (2006), 496-506.

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[115] M. Ionescu, A. Paun, Gh. Paun, M.J. Pérez-Jiménez. Computing with spiking neural P systems:Traces and small universal systems. 12th International Meeting on DNA Computing. Lecture Notes inComputer Science, 4287 (2006), 1-16.

[116] F. Bernardini, M. Gheorghe, N. Krasnogor, R.C. Muyinandi, M.J. Pérez-Jiménez, F.J. Romero. On Psystems as a modelling tool for biological systems. Membrane Computing. 6th International WorkshopWMC 2005. Lecture Notes in Computer Science, 3850 (2006), 114-133.

[117] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. On the power of dissolution inP systems with active membranes. 6th International Workshop on Membrane Computing. Lecture Notesin Computer Science, 3850 (2006), 224-240.

[118] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F.J. Romero. A linear time solution for QSAT withmembrane creation. Membrane Computing. 6th International Workshop WMC 2005. Lecture Notes inComputer Science, 3850 (2006), 241-252.

[119] N. Busi, M.A. Gutiérrez-Naranjo. Some Notes on Membrane Computation. 9th International Con-ference on Parallel Problem Solving from Nature. Lecture Notes in Computer Science, 4193 (2006),262-271.

[120] Gh. Paun, M.J. Perez-Jimenez. Foreword. Second Brainstorming Week on Membrane Computing inSevilla 2004. A fusion of foundations, methodologies and applications, 9 (2005), 629-630.

[121] M.A. Gutiérrez-Naranjo, M.J. Pérez Jiménez, A. Riscos. Towards a programming language in cellularcomputing. Electronic Notes in Theoretical Computer Science, 123 (2005), 93-110.

[122] M.A. Gutiérrez-Naranjo, M.J. Pérez Jiménez, A. Riscos, F.J. Romero. P systems with active mem-branes, without polarizations and without dissolution: A characterization of P. 4th International Con-ference on Unconventional Computation. Lecture Notes in Computer Science, 3699 (2005), 105-116.

[123] M.J. Pérez Jiménez, F.J. Romero. Attacking the Common Algorithmic Problem by recognizer P sys-tems. 4th International Conference on Machines, Computations and Universality. Lecture Notes inComputer Science, 3354 (2005), 304-315.

[124] C. Graciani, A. Riscos. Looking for simple common schemes to design recognizer P systems with activemembranes that solve numerical decision problems. 4th International Conference on UnconventionalComputation. Lecture Notes in Computer Science, 3699 (2005), 94-104.

[125] A. Cordón, M.A. Gutiérrez-Naranjo, M.J. Pérez Jiménez, A. Riscos. Exploring computation treesassociated with P systems. Membrane Computing. 5th International Workshop WMC 2004. LectureNotes in Computer Science, 3365 (2005), 278-286.

[126] R. Ceterchi, M.J. Pérez-Jiménez. On two-dimensional mesh networks and their simulation with Psystems. Membrane Computing. 5th International Workshop WMC 2004. Lecture Notes in ComputerScience, 3365 (2005), 259-277.

[127] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. On descriptive complexity in P systems.Membrane Computing. 5th International Workshop. Lecture Notes in Computer Science, 3365 (2005),320-330.

[128] M.J. Pérez-Jiménez, F.J. Romero. Trading polarizations for bi-stable catalysts in P systems with activemembranes.Membrane Computing. 5th International Workshop WMC 2004. Lecture Notes in ComputerScience, 3365 (2005), 373-388.

[129] M.J. Pérez-Jiménez. An approach to computational complexity in Membrane Computing. MembraneComputing. 5th International Workshop WMC 2004. Lecture Notes in Computer Science, 3365 (2005),85-109.

[130] S. Krishna, Gh. Paun. P systems with mobile membranes. First Conference on Computability in Europe,CiE 2005. Lecture Notes in Computer Science, 3526 (2005), 396-407.

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[131] C. Graciani, M.J. Pérez Jiménez. Using automated reasoning systems on Molecular Computing. 10thInternational Workshop on DNA Computing, DNA10. Lecture Notes in Computer Science, 3384 (2005),128-137.

[132] M. Margenstern, V. Mitrana, M.J. Pérez Jiménez. Accepting hybrid networks of evolutionary proces-sors. 10th International Workshop on DNA Computing, DNA10. Lecture Notes in Computer Science,3384 (2005), 235-246.

[133] Gh. Paun. Membrane Computing: Power, e�ciency, applications. First Conference on Computabilityin Europe, CiE 2005. Lecture Notes in Computer Science, 3526 (2005), 396-407.

[134] M.A. Gutiérrez-Naranjo, M.J. Pérez Jiménez, F.J. Romero. A study of the robustness of the EGFRsignalling cascade using continuous membrane systems. First International Work-Conference on theInterplay Between Natural and Arti�cial Computation. Lecture Notes in Computer Science, 3561 (2005),268-278.

[135] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F.J. Romero. A linear solution of Subset Sum problemby using membrane creation. First International Work-Conference on the Interplay Between Naturaland Arti�cial Computation. Lecture Notes in Computer Science, 3561 (2005), 258-267.

[136] A. Alhazov, R. Freund, Gh. Paun. Computational completeness of P systems with active membranesand two polarizations. 4th International Conference on Machines, Computations and Universality. Lec-ture Notes in Computer Science, 3354 (2005), 82-92.

Edited Books

References

[1] L. Valencia�Cabrera, M. García-Quismondo, L.F. Macías�Ramos, M.A. Martínez�del�Amor, Gh. Paun,A. Riscos�Núñez. Proceedings of the Eleventh Brainstorming Week on Membrane Computing, Sevilla,2012, Fénix Editora, Sevilla, 2012

[2] L. Pan, Gh. Paun, T. Song. Proceedings of the Asian Conference on Membrane Computing, HuazhongUniversity of Science and Technology, Wuhan (China), 2012.

[3] M.A. Martínez-del-Amor, Gh. Paun, I. Pérez-Hurtado, F.J. Romero-Campero: Proceedings of the TenthBrainstorming Week on Membrane Computing. Volume I, Sevilla, 2012, Fénix Editora, Sevilla, 2012.220.

[4] Gh. Paun. Membrane Computing. An introduction. Chinese edition, Springer Verlag, 2012, iii + 391pages.

[5] M. García-Quismondo, L.F. Macías-Ramos, Gh. Paun, I. Pérez-Hurtado, L. Valencia-Cabrera (eds.):Proceedings of the Tenth Brainstorming Week on Membrane Computing. Volume II, Sevilla, 2012, FénixEditora, Sevilla, 2012.

[6] M. Gheorghe, Gh. Paun, S. Verlan. Proceedings of the 12th International Conference on MembraneComputing (CMC12),Membrane Computing, 12th International Conference, CMC 2011, Fontainebleau,France, August 23-26, 2011, Revised Selected Papers. Lecture Notes in Computer Science, 7184 (2012),VI+511 pages. Fontainebleau (France), 2011.

[7] M.A. Martínez-del-Amor, Gh. Paun, I. Pérez-Hurtado, F.J. Romero-Campero, L. Valencia (eds.): Pro-ceedings of the Ninth Brainstorming Week on Membrane Computing, Sevilla, 2011, Fénix Editora,Sevilla, 2011.

[8] M. Gheorghe, T. Hinze, Gh. Paun, G. Rozenberg, A. Salomaa.Membrane Computing 11th InternationalConference, CMC 2010, Jena, Germany, August 24-27, 2010. Revised Selected Papers. Springer VerlagProBusiness Berlin, Berlin (Germany). Lecture Notes in Computer Science, 2011, Volume 6501, IX+392.

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[9] P. Milazzo, M.J.Pérez-Jiménez (eds.): Proceedings First Workshop on Applications of Membrane Com-puting, Concurrency and Agent-based modelling in Population Biology. Jena, Germany, 2010. ElectronicProceedings in Theoretical Computer Science, 2010, Volume 33.

[10] M.A. Martínez-del-Amor, Gh. Paun, I. Pérez-Hurtado, A. Riscos-Núñez (eds.): Proceedings of the EighthBrainstorming Week on Membrane Computing, Sevilla, 2010, Fénix Editora, Sevilla, 2010.

[11] R. Barbuti, G. Franco, Gh. Paun (eds.): Modeling bio-processes, special issue of Natural Computing,Volume 9, 2, (2010). Gh. Paun, G. Rozenberg, A. Salomaa. Handbook of Membrane Computing. OxfordUniversity Press, 2010, xiv + 664 pages.

[12] Gh. Paun, M.J. Pérez-Jiménez, A Riscos-Núñez, G. Rozenberg, A. Salomaa (eds.). Membrane Comput-ing. International Workshop WMC10. Curtea de Arges 2009. Lecture Notes in Computer Science, 2010,Volume 5957, IX+485 pages.

[13] Gh. Paun, M.J. Pérez-Jiménez, A. Riscos-Núñez. Proceedings of the Tenth Workshop on MembraneComputing, 10th Workshop on Membrane Computing, 24/08/2009, Curtea de Arges, Romania, X+565pages.

[14] R. Gutiérrez-Escudero, M.A Gutiérrez-Naranjo, Gh. Paun, I. Pérez-Hurtado, A. Riscos-Núñez. SeventhBrainstorming Week on Membrane Computing. Volume I, 02/02/2009, Sevilla, España, X+248 pages.

[15] M.A. Martínez-del-Amor, E.F. Orejuela-Pinedo, Gh. Paun, I. Pérez-Hurtado, A. Riscos-Núñez. SeventhBrainstorming Week on Membrane Computing. Volumen II, 02/02/2009, Sevilla, España, X+254 pages.

[16] D.W. Corne, P. Frisco, Gh. Paun, G. Rozenberg, A. Salomaa (eds.).Membrane Computing. InternationalWorkshop WMC9. Edinburgh 2008. Lecture Notes in Computer Science, Springer-Verlag, 2009, Volume5391, IX+402 pages.

[17] P. Frisco, D.W. Corne, Gh. Paun (eds.). Proceedings of the Ninth Workshop on Membrane Computing,Edinburgh, U.K., July 2008, V+449 pages.

[18] D. Díaz, C. Graciani, M.A. Gutiérrez-Naranjo, Gh. Paun, I. Pérez-Hurtado, A. Riscos (eds.). SixthBrainstorming Week on Membrane Computing. Fénix Editora, 2008, X+300 pages.

[19] G. Eleftherakis, P. Kefalas, Gh. Paun, G. Rozenberg, A. Salomaa (eds.). Membrane Computing. In-ternational Workshop WMC8. Thessaloniki 2007. Lecture Notes in Computer Science, Springer-Verlag,2007, Volume 4860, XI+452 pages.

[20] M.A. Gutiérrez-Naranjo, Gh. Paun, A. Romero, A. Riscos (eds.). Fifth Brainstorming Week on Mem-brane Computing. Fénix Editora, 2007, X+326 pages.

[21] G. Eleftherakis, P. Kefalas, Gh. Paun. Poceedings of the Eighth Workshop on Membrane ComputingWMC8. Thessaloniki 2007.

[22] H.J. Hoogeboom, Gh. Paun, G. Rozenberg, A. Salomaa (eds.). Membrane Computing. Internationalworkshop WMC7. Leiden 2006. Lecture Notes in Computer Science, Springer-Verlag, 2006, Volume4361, IX+553 pages.

[23] G. Ciobanu, Gh. Paun, M. J. Pérez-Jiménez (eds.). Applications of Membrane Computing. NaturalComputing Series, Springer-Verlag, 2006, X+439 pages.

[24] H.J. Hoogeboom, Gh. Paun, G. Rozenberg (eds.). Pre-proceedings of the 7th Workshop on MembraneComputing, Leiden 2006, IX+537.

[25] M.A. Gutiérrez-Naranjo, Gh. Paun, A. Riscos, F.J. Romero (eds.). Fourth Brainstorming Week onMembrane Computing. Volume I. Fénix Editora, 2006, XII+284 pages.

[26] C. Graciani, Gh. Paun, A. Romero, F. Sancho (eds.). Fourth Brainstorming Week on Membrane Com-puting. Volume II. Fénix Editora, 2006, XII+278 pages.

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[27] L. Pan, Gh. Paun. Pre-proceedings of the Internacional Conference Bio-Inspired Computing-Theory andApplications BIC-TA06, Wuhan 2006.

[28] C.S. Calude, M.J. Dinneen, Gh. Paun, M. J. Pérez-Jiménez, G. Rozenberg (eds.). UnconventionalComputation. Lecture Notes in Computer Science, Springer-Verlag, 2005, Volume 3699, XI+267 páginas.

[29] M.J. Pérez Jiménez, A. Romero, F. Sancho (eds.). Recent Results in Natural Computing. Fénix Editora,2005, VIII+311 pages.

[30] G. Mauri, Gh. Paun, M. J. Pérez-Jiménez, Gr. Rozenberg, A. Salomaa (eds.). Membrane Computing.International Workshop WMC6. Lecture Notes in Computer Science, Springer-Verlag, 2005, Volume3365, IX+415 pages.

[31] M.A. Gutiérrez-Naranjo, Gh. Paun, M.J. Pérez Jiménez (eds.). Cellular Computing. Complexity Aspects.Fénix Editora, 2005, VIII+297 pages.

[32] R. Freund, G. Lojka, M. Oswald, Gh. Paun (eds.). Proceedings of the 6th International Workshop onMembrane Computing, WMC6. Vienna 2005, VII+539 pages.

[33] M.A. Gutiérrez-Naranjo, A. Riscos, F.J. Romero, D. Sburlan (eds.). Third Brainstorming Week onMembrane Computing. Volumen II. Fénix Editora, 2005, XII+278 pages.

[34] Gh. Paun, G. Rozenberg, A. Salomaa (eds.). DNK Kompjuter. Novaja paradigms vytsislenii. IzdatelstvoMir, 2005.

[35] G. Ciobanu, Gh. Paun. Proceedings of the 1st International Workshop on Theory and Application of PSystems TAPS'05, Timisoara 2005.

[36] G. Mauri, Gh. Paun, M.J. Pérez-Jiménez, G. Rozenberg. A. Salomaa (eds.). Membrane Computing.International Workshop WMC5, Milano 2004. Revised Papers. Lecture Notes in Computer Science.Springer-Verlag, 2005, IX+415 pages.

Book Chapters

References

[1] M. García-Quismondo, L.F. Macías-Ramos, M.J. Pérez-Jiménez. Implementing Enzymatic NumericalP Systems for AI Applications by means of Graphic Processing Units. Beyond Arti�cial Intelligence:Contemplations, Expectations, Applications, Springer Berlin-Heidelberg. Series: Topics in IntelligentEngineering and Informatics, vol. 4 (2013), ch. 14, 137-159.

[2] M.J. Pérez-Jiménez. Razonando sobre soluciones mecánicas, inductivas y cualitativas. Estudios de Lóg-ica, Lenguaje y Epistemología, Fénix Editora, 2010, 211-229.

[3] M.J. Pérez-Jiménez. La mitosis celular: una sorprendente frontera de la e�ciencia. Liber amicorum AngelNepomuceno, Fénix Editora, 2010, 211-229.

[4] P. Cazzaniga, M. Gheorghe, N. Krasnogor, G. Mauri, D. Pescini, F.J. Romero-Campero. Probabilis-tic/Stochastic Models, The Oxford Handbook of Membrane Computing, Oxford University Press, 2010,455-474.

[5] G. Paun. Active Membranes, The Oxford Handbook of Membrane Computing, Oxford University Press,2010, 282-301.

[6] G. Paun. Membrane Computing and Economics, The Oxford Handbook of Membrane Computing, OxfordUniversity Press, 2010, 632-644.

[7] G. Paun, A. Salomaa, G. Rozenberg, Computability Elements for Membrane Computing, The OxfordHandbook of Membrane Computing, Oxford University Press, 2010, 58-82.

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[8] M. Cavaliere, S. Krishna, A. Paun, G. Paun. P Systems with Objects on Membranes, The OxfordHandbook of Membrane Computing, Oxford University Press, 2010, 363-388.

[9] D. Diaz, M. Graciani, M. Gutiérrez-Naranjo, I. Pérez, M.J. Pérez-Jiménez. Software for P Systems, TheOxford Handbook of Membrane Computing, Oxford University Press, 2010, 437-454.

[10] G. Paun, G. Rozenberg. An Introduction to and an Overview of Membrane Computing, The OxfordHandbook of Membrane Computing, Oxford University Press, 2010, 1-27.

[11] G. Paun, G. Rozenberg. Other Topics. The Oxford Handbook of Membrane Computing, Oxford Univer-sity Press, 2010, 654-663.

[12] M.J. Pérez-Jiménez, A. Riscos, A. Romero, D. Woods. Complexity: Membrane Division, MembraneCreation, The Oxford Handbook of Membrane Computing, Oxford University Press, 2010, 302-336.

[13] Gh. Paun. Membrane computing. Handbook of Natural Computing. Springer-Verlag, 2009.

[14] Gh. Paun. DNA computing by splicing and by insertion-deletion. Handbook of Natural Computing.Springer-Verlag, 2009.

[15] Gh. Paun. Membrane computing. Encyclopedia of Complexity and Systems Science 2009, Springer, 2009,5523-5535.

[16] Gh. Paun. Membrane computing: History and brief introduction. En E. Gelembe, J.-P. Kahane (eds.)Fundamental Concepts in Computer Science. Imperial College Press, London, 2009, 17-41.

[17] M.J. Pérez-Jiménez. Métodos Formales en Computación Bio-inspirada. Lógica e Filosofía da Ciencia,Colecçao Documenta 2, Centro de Filosofía das Ciencias da Universidade de Lisboa, 2009, 185-212.

[18] M.J. Pérez-Jiménez, T. Yokomori. Membrane Computing schema: A new approach to computationusing string insertion. Algorithmic Bioprocesses, Natural Computing Series, Springer-Verlag, 2009, PartV, 293-309.

[19] Gh. Paun, M.J. Perez-Jimenez: Spiking neural P systems. Recent results, research topics. In A. Condonet al. (eds.) Algorithmic Bioprocesses, Natural Computing Series, Springer, Berlin, 2009, 273-291.

[20] L. Pan, Gh. Paun, M.J. Perez-Jimenez. Spiking neural P systems: A short introduction and new normalforms. In C. En Achescu, F. Filip, B. Iantovics (eds.) Advanced Computational Technologies, Ed.Academiei, Bucuresti, 2009.

[21] Gh. Paun, M.J. Pérez-Jiménez Spiking Neural P systems: An overview. In A. Porto, A. Pazos, W. Buno(eds.) Advancing Arti�cial Intelligence through Biological Process Applications, Medical InformationScience Reference, IGI Global, 2008, Chapter IV, 59-72.

[22] Gh. Paun. From Cells to (Silicon) Computers, and Back. New Computational Paradigms, 2008, 343-371.

[23] M. Gheorghe, Gh. Paun. Systems Self-Assembly: DNA Molecules, Polynominoes, Cells. Systems Self-Assembly: Multidisciplinary , 49-78.

[24] Gh. Paun. Chomsky Hierarchy. Wiley Encyclopedia of Computer Science and Engineering 2008, JohnWiley & Sons Inc., 2008, 5523-5535.

[25] Mario J. Pérez-Jiménez. Un marco formal para modelos de computación bio-inspirados. In A. Nepomu-ceno, F.J. Salguero, F. Soler (eds.). Lógica, Filosofía del Lenguaje y de la Lógica, Mergablum, Edicióny Comunicación S.L., 2007, chapter XVII, 241-260.

[26] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos-Núñez, F.J. Romero, A. Romero. Characterizingtractability by cell-like membrane systems. In K.G. Subramanian, K. Rangarajan, M. Mukund (eds.)Formal models, languages and applications, World Scienti�c, Series in Machine Perception and Arti�cialIntelligence - Vol. 66, 2006, chapter 9, pp. 137-154.

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[27] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos-Núñez. Available membrane computing soft-ware. In G. Ciobanu, Gh. Paun, M.J. Pérez-Jiménez (eds.) Applications of Membrane Computing,Natural Computing Series, Springer-Verlag, 2006, Chapter 15, 411-436.

[28] M.J. Pérez-Jiménez, A. Romero, F. Sancho Computationally hard problems addressed through P sys-tems. In G. Ciobanu, Gh. Paun, M.J. Pérez-Jiménez (eds.) Applications of Membrane Computing,Natural Computing Series, Springer-Verlag, 2006, Chapter 12, 315-346.

[29] M.A. Gutiérrez-Naranjo, A. Leporati, C. Zandron. Converting integer numbers from binary to unarynotation with P systems. In M.A. Gutiérrez-Naranjo, Gh. Paun, M.J. Pérez-Jiménez (eds.) CellularComputing (Complexity Aspects). Fénix Editora, 2005, pp. 201-207.

[30] F. Bernardini, M. Gheorghe, N. Krasnogor, Gh. Paun. Turing machines with cells on the tape. CellularComputing (Complexity Aspects). Fénix Editora, 2005, pp. 61-73.

[31] L. Cardelli, Gh. Paun. An universality result for a membrane calculus based on mate/drips operations.Cellular Computing (Complexity Aspects). Fénix Editora, 2005, pp. 75-94.

[32] G. Ciobanu, Gh. Paun, M.J. Pérez Jiménez. O n the branching complexity of P systems. CellularComputing (Complexity Aspects). Fénix Editora, 2005, pp. 165-176.

[33] Gh. Paun. Membrane Computing. Some recent results and current research topics. Recent Results inNatural Computing, Fénix Editora, 2005, pp. 135-166.

[34] Gh. Paun. Membrane Computing. Main ideas, basic results, applications. Molecular Computation Mod-els: Unconventional Approaches, Idea Group Inc., 2005, pp. 1-31.

[35] A. Cordón, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. Cellular solutions for some numeri-cal NP-complete problems: A Prolog implementation.Molecular Computational Models: UnconventionalApproaches, Idea Group Publishing, 2005, 115-149.

[36] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. P systems with membrane creation and rule input. Cel-lular Computing. Complexity Aspects, Fénix Editora, 2005, 209-224.

[37] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. Multidimensional Sevilla Carpets associatedwith P systems. Cellular Computing. Complexity Aspects, Fénix Editora, 2005, 225-235.

[38] M.J. Pérez-Jiménez. Computational complexity aspects of membrane computing: Ideas, results, openproblems. Cellular Computing. Complexity Aspects, Fénix Editora, 2005, 277-292.

[39] C. Graciani, M.J. Pérez-Jiménez. Automated reasoning systems and molecular computing. Recent Re-sults in Natural Computing, Fénix Editora, 2005, 47-78.

[40] M.J. Pérez-Jiménez; F.J. Romero. Membrane Computing as production systems. Recent Results inNatural Computing, Fénix Editora, 2005, 167-204.

[41] M.J. Pérez-Jiménez; F. Sancho. Formal veri�cation of programs in molecular models with random accessmemory. Recent Results in Natural Computing, Fénix Editora, 2005, 205-229.

[42] M.J. Pérez-Jiménez; F. Sancho. Generating pairwise disjoint families through DNA computations. Re-cent Results in Natural Computing, Fénix Editora, 2005, 231-246.

Conferences

References

[1] M.J. Pérez-Jiménez. The P versus NP problem: Unconventional insights from Membrane Computing.Invited talk. Proceedings of the Second Asian Conference on Membrane Computing (ACMC 2013),Chengdu, China, November 4-7, 2013, p. 7.

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[2] I. Pérez-Hurtado, L. Valencia, J.M. Chacón, A. Riscos, M.J. Pérez-Jiménez. A P-Lingua based simulatorfor tissue P systems with cell separation. Proceedings of the Second Asian Conference on MembraneComputing (ACMC 2013), Chengdu, China, November 4-7, 2013, pp. 208-220.

[3] M.J. Pérez-Jiménez, A. Riscos, M. Rius, L. Valencia. The relevance of the environment on the e�ciencyof tissue P systems. Proceedings of the 14th International Conference on Membrane Computing. Instituteof Mathematics and Computer Science. Academy of Sciences of Moldova, August 20-23, 2013, Chisinau,Moldova, pp.283-295.

[4] Gh. Paun, M.J. Pérez-Jiménez. Preface. Proceedings of the Eleventh Brainstorming Week on MembraneComputing (11BWMC), 04/02/2013-08/02/2013, Seville, Spain, p. vii-ix.

[5] I. Ardelean, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, F. Peña-Cantillana, I. Sarchizian. Studying theChlorophyll Fluorescence in Cyanobacteria with Membrane Computing Techniques. Proceedings of theEleventh Brainstorming Week on Membrane Computing (11BWMC), 04/02/2013-08/02/2013, Seville,Spain, p. 9-24.

[6] Z.F. Bangalan, K.A.N. Soriano, R.A.B. Juayong, F.G.C. Cabarle, H.N. Adorna, M.A. Martínez-del-Amor. A GPU Simulation for Evolution-Communication P Systems with Energy Having no An-tiport Rules. Proceedings of the Eleventh Brainstorming Week on Membrane Computing (11BWMC),04/02/2013-08/02/2013, Seville, Spain, p. 25-50.

[7] M. Gheorghe, F. Ipate, C. Dragomir, L. Mierla, L. Valencia-Cabrera, M. García-Quismondo, M.J. Pérez-Jiménez. Kernel P Systems - Version I. Proceedings of the Eleventh Brainstorming Week on MembraneComputing (11BWMC), 04/02/2013-08/02/2013, Seville, Spain, p. 97-124.

[8] C. Graciani, M.A. Gutiérrez-Naranjo, A. Riscos-Núñez. Rete Algorithm for P Systems Simulators.Proceedings of the Eleventh Brainstorming Week on Membrane Computing (11BWMC ), 04/02/2013-08/02/2013, Seville, Spain, p. 97-124.

[9] M.A. Martínez-del-Amor, J. Pérez-Carrasco, M.J. Pérez-Jiménez. Simulating a Family of Tissue PSystems Solving SAT on the GPU. Proceedings of the Eleventh Brainstorming Week on MembraneComputing (11BWMC ), 04/02/2013-08/02/2013, Seville, Spain, p. 201-220.

[10] Gh. Paun, M.J. Pérez-Jiménez, G. Rozenberg. Bridging Membrane and Reaction Systems. FurtherResults and Research Topics. Proceedings of the Eleventh Brainstorming Week on Membrane Computing(11BWMC), 04/02/2013-08/02/2013, Seville, Spain, p. 243-256.

[11] L. Valencia-Cabrera, M. García-Quismondo, M.J. Pérez-Jiménez, Y. Su, H. Yu, L. Pan. AnalysingGene Networks with PDP Systems. Arabidopsis thaliana, a Case Study. Proceedings of the EleventhBrainstorming Week on Membrane Computing (11BWMC), 04/02/2013-08/02/2013, Seville, Spain, p.257-272.

[12] .J. Romero, M.J. Pérez-Jiménez. P systems as a modeling

[13] F. Ipate, R. Lefticaru, L. Mierla, L. Valencia� Cabrera, H. Han, G. Zhang, C. Dragomir, M.J. Perez�Jimenez, M. Gheorghe. Kernel P Systems: Applications and Implementations. Proceedings of TheEighth International Conference on Bio-Inspired Computing: Theories and Applications (BIC�TA) ,12/07/2013-14/07/2013, HuangShan, China, p. 1081-1089

[14] J. Romero, M.J. Pérez-Jiménez. P systems as a modeling framework for molecular Systems Biology.Invited talk. Pre-proceedings of Asian Conference on Membrane Computing, 05-18/10/2012, Wuhan,China, p. 8-10.

[15] L.F. Macías, M.J. Pérez-Jiménez. On recent developments in P-lingua based simulators for Spiking Neu-ral P Systems. Pre-proceedings of Asian Conference on Membrane Computing, 05-18/10/2012, Wuhan,China, p. 14-29.

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[16] M. García-Quismondo, L. Valencia, Y. Su, M.J. Pérez-Jiménez, L. Pan, H. Yu. Modeling logic gene net-works by means of probabilistic dynamic P systems. Pre-proceedings of Asian Conference on MembraneComputing, 05-18/10/2012, Wuhan, China, p. 30-60.

[17] L. Pan, M.J. Pérez-Jiménez, A. Riscos, M. Rius. New frontiers of the e�ciency in tissue P systems. Pre-proceedings of Asian Conference on Membrane Computing, 05-18/10/2012, Wuhan, China, p. 61-73.

[18] F. Peña-Cantillana, A. Berciano, D. Díaz-Pernil, M.A. Gutiérrez Naranjo. Parallel Skeletonizing of Dig-ital Imagery by Using Cellular Automata Proceedings of 4th International Workshop In ComputationalTopology in Image Context (CTIC 2012), 28-30/05/2012, Bertinoro, Italy, p. 39-48.

[19] M. García-Quismondo, L.F. Macías-Ramos, M.J. Pérez-Jiménez. Implementing ENPS by means ofGPUs for AI applications. Proceedings of Interdisciplinary Aspects of Arti�cial Intelligence, 08/12/2011-09/12/2011, Pilsen, Czech Republic, p. 27-33.

[20] I. Ardelean, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, F. Peña-Cantillana, R. Reina-Molina, I. Sarchizian.Counting Cells with Tissue-like P Systems. Proceedings of the Tenth Brainstorming Week on MembraneComputing. Volume I, 30/01/2012-03/02/2012, Seville, Spain, p. 69-78.

[21] D. Díaz-Pernil, F. Peña-Cantillana, M.A. Gutiérrez-Naranjo. Skeletonizing Images by Using SpikingNeural P Systems. Proceedings of the Tenth Brainstorming Week on Membrane Computing. Volume I,30/01/2012-03/02/2012, Seville, Spain, p. 91-110.

[22] R. Freund, I. Pérez-Hurtado, A. Riscos-Núñez, S. Verlan. A Formal Framework for P Systems withDynamic Structure. Proceedings of the Tenth Brainstorming Week on Membrane Computing. Volume I,30/01/2012-03/02/2012, Seville, Spain, p. 111-122.

[23] M. García-Quismondo, A.B. Pavel, M.J. Pérez-Jiménez. Simulating Large-Scale ENPS Models by Meansof GPU. Proceedings of the Tenth Brainstorming Week on Membrane Computing. Volume I, 30/01/2012-03/02/2012, Seville, Spain, p. 137-152.

[24] M. Gheorghe, Gh. Paun, M.J. Pérez�Jiménez - editors. Frontiers of Membrane Computing: OpenProblems and Research Topics. Proceedings of the Tenth Brainstorming Week on Membrane Computing.Volume I, 30/01/2012-03/02/2012, Seville, Spain, p. 171-250.

[25] R.A.B. Juayong, F.G.C. Cabarle, H.N. Adorna, M.A. Martínez-del-Amor. On the Simulations ofEvolution-Communication P Systems with Energy without Antiport Rules for GPUs. Proceedings ofthe Tenth Brainstorming Week on Membrane Computing. Volume I, 30/01/2012-03/02/2012, Seville,Spain, p. 267-290.

[26] R. Lefticaru, F. Ipate, L. Valencia-Cabrera, A. Turcanu, C. Tudose, M. Gheorghe, M.J. Pérez-Jiménez,I.M. Niculescu, C. Dragomir. Towards an Integrated Approach for Model Simulation, Property Ex-traction and Veri�cation of P Systems. Proceedings of the Tenth Brainstorming Week on MembraneComputing. Volume I, 30/01/2012-03/02/2012, Seville, Spain, p. 291-318.

[27] M.A. Martínez-del-Amor, I. Karlin, R.E. Jensen, M.J. Pérez-Jiménez, A.C. Elster. Parallel Simulationof Probabilistic P Systems on Multicore Platforms. Proceedings of the Tenth Brainstorming Week onMembrane Computing. Volume II, 30/01/2012-03/02/2012, Seville, Spain, p. 17-26.

[28] M.A. Martínez-del-Amor, I. Pérez-Hurtado, M. García-Quismondo, L.F. Macías-Ramos, L. Valencia-Cabrera, A. Romero-Jiménez, C. Graciani, A. Riscos-Núñez, M.A. Colomer, M.J. Pérez-Jiménez. DCBA:Simulating Population Dynamics P Systems with Proportional Object Distribution. Proceedings of theTenth Brainstorming Week on Membrane Computing. Volume II, 30/01/2012-03/02/2012, Seville, Spain,p. 27-56.

[29] Gh. P un, M.J. Pérez-Jiménez. Languages and P Systems: Recent Developments. Proceedings of theTenth Brainstorming Week on Membrane Computing. Volume II, 30/01/2012-03/02/2012, Seville, Spain,p. 61-74.

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[30] H. Peng, J. Shao, B. Li, J. Wang, M.J. Pérez-Jiménez, Y. Jiang, Y. Yang. Image Thresholding withCell-like P Systems. Proceedings of the Tenth Brainstorming Week on Membrane Computing. VolumeII, 30/01/2012-03/02/2012, Seville, Spain, p. 75-88.

[31] M.J. Pérez-Jiménez, A. Riscos-Núñez, M. Rius-Font, F.J. Romero-Campero. The Role of the Envi-ronment in Tissue P Systems with Cell Division. Proceedings of the Tenth Brainstorming Week onMembrane Computing. Volume II, 30/01/2012-03/02/2012, Seville, Spain, p. 89-104.

[32] M.J. Pérez-Jiménez, P. Sosík. An Optimal Frontier of the E�ciency of Tissue P Systems with Cell Di-vision. Proceedings of the Tenth Brainstorming Week on Membrane Computing. Volume II, 30/01/2012-03/02/2012, Seville, Spain, p. 105-140.

[33] A.E. Porreca, N. Murphy, M.J. Pérez-Jiménez. Improving the E�ciency of Tissue P Systems withCell Separation. Proceedings of the Tenth Brainstorming Week on Membrane Computing. Volume II,30/01/2012-03/02/2012, Seville, Spain, p. 141-166.

[34] R. Reina-Molina, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo. Cell Complexes and Membrane Computingfor Thinning 2D and 3D Images. Proceedings of the Tenth Brainstorming Week on Membrane Computing.Volume II, 30/01/2012-03/02/2012, Seville, Spain, p. 167-186.

[35] T. Song, L. Pan, Gh. P un. Asynchronous Spiking Neural P Systems with Local Synchronization. Pro-ceedings of the Tenth Brainstorming Week on Membrane Computing. Volume II, 30/01/2012-03/02/2012,Seville, Spain, p. 187-206.

[36] G. Zhang, M.A. Gutiérrez-Naranjo, Y. Qin, M. Gheorghe. A Membrane-Inspired Evolutionary Algo-rithm with a Population P System and its Application to Distribution System Recon�guration. Proceed-ings of the Tenth Brainstorming Week on Membrane Computing. Volume II, 30/01/2012-03/02/2012,Seville, Spain, p. 277-292.

[37] Y. Niu, L. Pan, M.J. Pérez-Jiménez. A Uniform Solution to Common Algorithmic Problem by Tis-sue P Systems with Cell Division. Proceedings of the Sixth International Conference on Bio-InspiredComputing: Theories and Applications, BIC-TA, 27-29/09/2011, Penang, Malaysia, pp. 302-326.

[38] M. Gheorghe, Gh. Paun, S. Verlan. Preface. Proceedings of the 12th International Conference on Mem-brane Computing (CMC12), 23/08/2011-27/08/2011, Fontainebleau, France, p. i-iii.

[39] F. Cabarle, H. Adorna, M.A. Martínez-del-Amor. A Spiking Neural P system simulator based on CUDA.Proceedings of the 12th International Conference on Membrane Computing (CMC12), 23/08/2011-27/08/2011, Fontainebleau, France, p.77-92.

[40] F. Ipate, R. Lefticaru, I. Pérez-Hurtado, M.J. Pérez-Jiménez, C. Tudose. Formal Veri�cation of P Sys-tems with Active Membranes through Model Checking. Proceedings of the 12th International Conferenceon Membrane Computing (CMC12), 23/08/2011-27/08/2011, Fontainebleau, France, p.241-252.

[41] L.F. Macías-Ramos, I. Pérez-Hurtado, M. García-Quismondo, L. Valencia-Cabrera, M.J. Pérez-Jiménez,A. Riscos-Núñez. A P�Lingua based Simulator for Spiking Neural P Systems. Proceedings of the 12thInternational Conference on Membrane Computing (CMC12), 23/08/2011-27/08/2011, Fontainebleau,France, p.232-346.

[42] A. Riscos-Núñez. Current developments on computational modeling using P Systems. Computability inEurope 2011 (CIE 2011), 27/06/2011-02/07/2011, So�a, Bulgaria, p. 250-251. 320.

[43] F. Peña-Cantillana, D. Díaz-Pernil, H.A. Christinal, M.A. Gutiérrez Naranjo. Smoothing Problem in 2DImages with Tissue-like P Systems and Parallel Implementation. Proceedings of the Ninth BrainstormingWeek on Membrane Computing, 31/01/2011-04/02/2011, Seville, Spain, p. 317-328.

[44] S. Ivanov, A. Alhazov, V. Rogojin, M.A. Gutiérrez Naranjo. Forward and Backward Chaining withP Systems. Proceedings of the Ninth Brainstorming Week on Membrane Computing, 31/01/2011-04/02/2011, Seville, Spain, p.221-236.

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[45] R. Reina-Molina, D. Díaz-Pernil, M.A. Gutiérrez Naranjo. Integer Linear Programming for Tissue-like P Systems. Proceedings of the Ninth Brainstorming Week on Membrane Computing, 31/01/2011-04/02/2011, Seville, Spain, p.343-353.

[46] M. Cavaliere, M.A. Gutiérrez-Naranjo. P Systems with Replicator Dynamics: A Proposal. Proceedingsof the Ninth Brainstorming Week on Membrane Computing, 31/01/2011-4/02/2011, Seville, Spain, pp.63-70.

[47] M.A. Colomer, C. Fondevilla, L. Valencia-Cabrera. A New P System to Model the Subalpine andAlpine Plant Communities. Proceedings of the Ninth Brainstorming Week on Membrane Computing,31/01/2011-4/02/2011, Seville, Spain, pp. 91-112.

[48] F. Cabarle, H. Adorna, M.A. Martínez-del-Amor. Spiking neural P system without delay simulatorimplementation using GPGPUs. Proceedings of the Ninth Brainstorming Week on Membrane Computing,31/01/2011-4/02/2011, Seville, Spain, pp. 23-42.

[49] J. Carnero, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo. Designing Tissue-like P Systems for Image Segmen-tation on Parallel Architectures. Proceedings of the Ninth Brainstorming Week on Membrane Computing,31/01/2011-4/02/2011, Seville, Spain, pp. 43-62.

[50] F. Cabarle, H. Adorna, M.A. Martínez-del-Amor. Spiking neural P system without delay simulatorimplementation using GPGPUs. Eleventh Philippine Computing Science Congress, 4-5/03/2011, Naga,Philippines, p.35-43.

[51] M.A. Gutiérrez, M.J. Pérez-Jiménez. Implementing Local Search with Membrane Computing. Proceed-ings of the Ninth Brainstorming Week on Membrane Computing, 31/01/2011-4/02/2011, Seville, Spain,pp. 159-168.

[52] M. Ionescu, Gh. Paun, M.J. Pérez-Jiménez, A. Rodríguez-Patón. Spiking Neural P Systems with severaltypes of spikes. Proceedings of the Ninth Brainstorming Week on Membrane Computing, 31/01/2011-4/02/2011, Seville, Spain, pp. 183-192.

[53] M. Ionescu, Gh. Paun, M.J. Pérez-Jiménez, T. Yokomori. Spiking Neural dP Systems. Proceedings ofthe Ninth Brainstorming Week on Membrane Computing, 31/01/2011-4/02/2011, Seville, Spain, pp.193-208.

[54] Gh. Paun, M.J. Pérez-Jiménez. dP Automata versus right-linear matrix grammar. Proceedings of theNinth Brainstorming Week on Membrane Computing, 31/01/2011-4/02/2011, Seville, Spain, pp. 293-304.

[55] Gh. Paun, M.J. Pérez-Jiménez. Towards bringing two cell-inspired models: P systems and R systems.Proceedings of the Ninth Brainstorming Week on Membrane Computing, 31/01/2011-4/02/2011, Seville,Spain, pp. 305-316.

[56] X. Zhang, Y. Niu, L. Pan, M.J. Pérez-Jiménez. Linear time solution to prime factorization by tissueP systems with cell division. Proceedings of the Ninth Brainstorming Week on Membrane Computing,31/01/2011-4/02/2011, Seville, Spain, pp. 355-372.

[57] Gh. Paun. Membrane Computing at Twelve Years (Back to Turku). Unconventional ComputationUC2011, 06-10/06/2011, Turku, Finland, p. 36-37.

[58] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, P. Real, V. Sánchez-Canales. A New Way to Obtain HomologyGroups in Binary 2D Images Using Membrane Computing. XII Encuentro de Algebra Computacional yAplicaciones EACA 2010, 19-21/07/2010, Santiago de Compostela, Spain, p. 107-112.

[59] X. Zeng, H. Adorna, M.A. Martínez-del-Amor, L. Pan, M.J. Pérez-Jiménez. Matrix representation ofSpiking Neural P Systems. Proceedings of the Eleventh International Conference on Membrane Com-puting (CMC 11), 24-27/08/2010, Jena, Germany, p. 425-439.

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[60] J.M. Cecilia, J.M. García, G. Guerrero, M. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez,M. Ujaldón. P System simulation on massively parallel architectures. Third International Workshop onParallel Architectures and Bioinspired Algorithms, 12-16/09/2010, Vienna, Austria, p.17-26.

[61] J.M. Cecilia, J.M. García, G. Guerrero, M. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez,M. Ujaldón. Enhancing the Simulation of P Systems for the SAT Problem on GPUs. Symposium onApplication Accelerators in High Performance Computing, 12-15/07/2010, Knoxville, USA.

[62] D. Díaz-Pernil, C.M. Fernández-Márquez, M. García-Quismondo, M.A. Gutiérrez-Naranjo, M.A.Martínez-del-Amor. Solving Sudoku with Membrane Computing. Proceedings 2010 IEEE Fifth In-ternational Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA 2010), 23-26/09/2010, Changsha, China, p. 610-615.

[63] M.A. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos-Núñez, M.A. Colomer. Anew simulation algorithm for multienvironment probabilistic P systems. Proceedings 2010 IEEE FifthInternational Conference on Bio-inspired Computing: Theories and Applications (BIC-TA 2010), 23-26/09/2010, Changsha, China, p. 59-68.

[64] M.A. Colomer, M.A. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos-Núñez. Auniform framework for modeling based on P Systems. Proceedings 2010 IEEE Fifth International Con-ference on Bio-inspired Computing: Theories and Applications (BIC-TA 2010), 23-26/09/2010, Chang-sha, China, p. 616-621.

[65] I. Pérez-Hurtado, L. Valencia, M.J. Pérez-Jiménez, M.A. Colomer, A. Riscos-Núñez. MeCoSim: Ageneral purpose software tool for simulating biological phenomena by means of P Systems. Proceedings2010 IEEE Fifth International Conference on Bio-inspired Computing: Theories and Applications (BIC-TA 2010), 23-26/09/2010, Changsha, China, p. 637-643.

[66] M.A. Colomer, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos-Núñez. Simulating Tritrophic Interac-tions by Means of P Systems. Proceedings 2010 IEEE Fifth International Conference on Bio-inspiredComputing: Theories and Applications (BIC-TA 2010), 8-10/09/2010, Liverpool, UK, p. 1621-1628.

[67] D. Díaz-Pernil, M.A. Gutiérrez Naranjo, H. Molina-Abril, P. Real. A Bio-inspired Software for Seg-menting Digital Images. IEEE Fifth International Conference on Bio-Inspired Computing: Theoriesand Applications (BIC-TA 2010). 8-10/09/2010. Liverpool Hope University, Liverpool, United King-dom, p.1377 - 1381.

[68] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Depth-�rst Search with P Systems. Eleventh InternationalConference on Membrane Computing (CMC11). 24-27 Au ust 2010, Jena, Germany, p. 257 - 267.

[69] H. Adorna, Gh. Paun, M.J. Pérez-Jiménez. On Communication Complexity in Evolution-Communication P Systems. 8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla,España, p.1-22.

[70] H.A. Christinal, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Array Tissue-like P Sys-tems. 8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla, España, p.37-52.

[71] H.A. Christinal, D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Tissue-like P Systemswithout Environment. 8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla, España,p.53-64.

[72] D. Díaz-Pernil, C.M. Fernández-Márquez, M. García-Quismondo, M.A. Gutiérrez-Naranjo, M.A.Martínez-del-Amor. A Cellular Sudoku Solver. 8th Brainstorming Week on Membrane Computing,02/02/2010, Sevilla, España, p.77-88.

[73] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, P. Real, V. Sánchez-Canales. A Cellular Way to Obtain Ho-mology Groups in Binary 2D Images. 8th Brainstorming Week on Membrane Computing, 02/02/2010,Sevilla, España, p.89-100.

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[74] G. Escuela, M.A. Gutiérrez-Naranjo. An Application of Genetic Algorithms to Membrane Computing.8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla, España, p.101-108.

[75] M. García-Quismondo, M.A. Gutiérrez-Naranjo, D. Ramírez-Martínez. How Does a P System Sound?8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla, España, p.123-132.

[76] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Membrane Computing Meets Arti�cial Intelligence: ACase Study. 8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla, España, p.133-144.

[77] Gh. Paun, M.J. Pérez-Jiménez. Solving Problems in a Distributed Way in Membrane Computing: dPSystems. 8th Brainstorming Week on Membrane Computing, 02/02/2010, Sevilla, España, p.219-234.

[78] M.J. Pérez-Jiménez. Computational Complexity in Membrane Computing. Algebraic Computing, SoftComputing, and Program Veri�cation, 21-23/04/2010, Castro Urdiales, Cantabria.

[79] I. Pérez-Hurtado, A. Riscos-Núñez. Length of Rules and Tractability in Tissue-Like P Systems. AlgebraicComputing, Soft Computing, and Program Veri�cation, 21-23/04/2010, Castro Urdiales, Cantabria.

[80] I. Pérez-Hurtado, A. Riscos-Núñez. P-Lingua: A Programming Language for Membrane Comput-ing. Algebraic Computing, Soft Computing, and Program Veri�cation, 21-23/04/2010, Castro Urdiales,Cantabria.

[81] M. García-Quismondo, R. Gutiérrez-Escudero, I. Pérez-Hurtado, M. J. Pérez-Jiménez, A. Riscos-Núñez.An overview of P-Lingua 2.0. 10th Workshop on Membrane Computing, Curtea de Arges, Romania,August 2009, pp. 240-264.

[82] M. García-Quismondo, B.M. Henley, I. Pérez-Hurtado, A. Riscos-Núñez. A �rst attempt to model notchsignalling by means of P systems. Pre-proceedings of the 10th Workshop on Membrane Computing,Curtea de Arges, Romania, August 2009, pp. 265-268.

[83] M. Cardona, M.A. Colomer, A. Margalida, I. Pérez-Hurtado, M.J. Pérez-Jiménez, D. Sanuy. A P systembased model of an ecosystem of some scavenger birds. 10th Workshop on Membrane Computing, Curteade Arges, Romania, August 2009, pp. 153-168.

[84] J.M. Cecilia, G.D. Guerrero, J.M. García, M. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez.Simulation of P systems with Active Membranes on CUDA. International Workshop on High Perfor-mance Computational Systems Biology, Trento, Italy, October 2009, pp. 61-71.

[85] R. Gutiérrez-Escudero, M.J. Pérez-Jiménez, M. Rius-Font. Characterizing tractability by tissue-likeP systems. 10th Workshop on Membrane Computing, Curtea de Arges, Romania, August 2009, pp.269-281.

[86] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Searching previous con�gurations in membrane comput-ing. 10th Workshop on Membrane Computing, Curtea de Arges, Romania, August 2009, pp. 282-297.

[87] M.A. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez, J.M. Cecilia, G.D. Guerrero, J.M.García. Simulating active membrane systems using GPUs. Pre-proceedings of the 10th Workshop onMembrane Computing, Curtea de Arges, Romania, August 2009, pp.369-384.

[88] J. Wang, H.J. Hoogeboom, L. Pan, Gh. Paun. Spiking neural P systems with weights and thresholds.10th Workshop on Membrane Computing, Curtea de Arges, Romania, August 2009, pp. 514-533.

[89] M.J. Pérez-Jiménez. A computational complexity theory in membrane computing. 10th Workshop onMembrane Computing, Curtea de Arges, Romania, August 2009, pp. 82-105

[90] N. Murphy, D. Woods. Uniformity: uncovering the frontier of parallelism. 10th Workshop on MembraneComputing, Curtea de Arges, Romania, August 2009, pp. 556-560

[91] Gh. Paun. A bibliography of spiking neural P systems. 7th Brainstorming Week on Membrane Comput-ing, Volume II, Seville, Spain, 2009, pp. 207-212.

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[92] M. Cardona, M.A. Colomer, M.J. Pérez-Jiménez. Characterizing the aperiodicity of irreducible markovchains by using P Systems. 7th Brainstorming Week on Membrane Computing, Volume I, Seville, Spain,2009, pp. 81-96

[93] D. Díaz-Pernil, P. Gallego-Ortiz, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos-Núñez. Cell-like versus tissue-like P systems by means of Sevilla Carpets. 7th Brainstorming Week on MembraneComputing, Volume I, Seville, Spain, 2009, pp. 109-121

[94] R. Gutiérrez-Escudero, M.J. Pérez-Jiménez, M. Rius-Font. Characterizing tractability by tissue-like Psystems. 7th Brainstorming Week on Membrane Computing, Volume I, Seville, Spain, 2009, pp. 169-180.

[95] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Computing backwards with P systems. 7th BrainstormingWeek on Membrane Computing, Volume I, Seville, Spain, 2009, pp. 211-226,

[96] L. Pan, M.J. Pérez-Jiménez. E�ciency of tissue P systems with cell separation. 7th Brainstorming Weekon Membrane Computing, Volume II, Seville, Spain, 2009, pp. 169-196

[97] B.M. Henley. Notch signalling and cellular fate choices: A short review. 7th Brainstorming Week onMembrane Computing, Volume I, Seville, Spain, 2009, pp. 227-230

[98] L. Pan, Gh. Paun. New normal forms for spiking neural P systems. 7th Brainstorming Week on Mem-brane Computing, Volume II, Seville, Spain, 2009, pp.127-138

[99] M. Cardona, M.A. Colomer, A. Margalida, I. Pérez-Hurtado, M.J. Pérez-Jiménez, D. Sanuy. P systembased model of an ecosystem of the scavenger birds. 7th Brainstorming Week on Membrane Computing,Volume I, Seville, Spain, 2009, pp. 65-80

[100] M. García-Quismondo, R. Gutiérrez-Escudero, I. Pérez-Hurtado, M.J. Pérez-Jiménez. P-Lingua 2.0:New features and �rst applications. 7th Brainstorming Week on Membrane Computing, Volume I, Seville,Spain, 2009, pp. 141-168

[101] M.A. Gutiérrez-Naranjo, A. Leporati. Performing arithmetic operations with spiking neural P systems.7th Brainstorming Week on Membrane Computing, Volume I, Seville, Spain, 2009, pp.181-198

[102] M.A. Gutiérrez-Naranjo, M.A. Martínez-del-Amor, I. Pérez-Hurtado, M. J. Pérez-Jiménez. Solving theN-Queens puzzle with P systems. 7th Brainstorming Week on Membrane Computing, Volume I, Seville,Spain, 2009, pp. 199-210

[103] M.A. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez, J.M. Cecilia, G.D. Guerrero, J.M.García. Simulation of recognizer P systems by using manycore GPUs. 7th Brainstorming Week onMembrane Computing, Volume II, Seville, Spain, 2009, pp.45-58

[104] L. Pan, Gh. Paun. Spiking neural P systems with anti-spikes. 7th Brainstorming Week on MembraneComputing, Volume II, Seville, Spain, 2009, pp. 139-150

[105] L. Pan, Gh. Paun, M.J. Pérez-Jiménez. Spiking neural P systems with neuron division and budding.7th Brainstorming Week on Membrane Computing, Volume II, Seville, Spain, 2009, pp.151-168

[106] Gh. Paun. Some open problems collected during 7th BWMC. 7th Brainstorming Week on MembraneComputing, Volume II, Seville, Spain, 2009, pp.197-206

[107] N. Murphy, D. Woods. The computational complexity of uniformity and semi-uniformity in membranesystems. 7th Brainstorming Week on Membrane Computing, Volume II, Sevilla, Spain, 2009, pp. 73-84389.

[108] G.D. Guerrero, J.M. Cecilia, J.M. García, M. Martínez-del-Amor, I. Pérez-Hurtado, M.J. Pérez-Jiménez. Analysis of P Systems Simulation on CUDA. Actas de las XX Jornadas de Paralelismo, 2009,pp. 219-224.

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[109] R. Ceterchi, M.J. Pérez-Jiménez, A.I. Tomescu. Sorting omega networks simulated with P systems:Optimal data layouts. 6th Brainstorming Week on Membrane Computing, Seville, Spain, 2008, pp. 79-92.

[110] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. Solving the Partition problemby using tissue-like P systems. 6th Brainstorming Week on Membrane Computing, Seville, Spain, 2008,pp. 123-134.

[111] M.A. Gálvez, M.A. Gutiérrez-Naranjo, D. Ramírez, E. Rivero. Testing Einstein's Formula on BrownianMotion Using Membrane Computing. 6th Brainstorming Week on Membrane Computing, Seville, Spain,2008, pp. 171-182.

[112] E. Rivero-Gil, M.A. Gutiérrez-Naranjo, A. Romero, A. Riscos. A Software Tool for Generating Graphicsby Means of P Systems. International Workshop on Computing with Biomolecules, 2008, pp. 87-100.

[113] M.A. Gutiérrez-Naranjo, A. Leporati. Solving Numerical NP-complete Problems by Spiking NeuralP Systems with Pre-computed Resources. 6th Brainstorming Week on Membrane Computing, Seville,Spain, 2008, pp. 193-210.

[114] E. Rivero, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Graphics and P systems: Experiments withJPLANT. 6th Brainstorming Week on Membrane Computing, Seville, Spain, 2008, pp. 241-254.

[115] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. A First Model for Hebbian Learning with Spiking NeuralP Systems. 6th Brainstorming Week on Membrane Computing, Seville, Spain, 2008, pp. 211-233

[116] M. Cardona, M. Colomer, M.J. Pérez-Jiménez, D. Sanuy, A. Margalida. A P System Modeling anEcosystem Related to the Bearded Vulture. 6th Brainstorming Week on Membrane Computing, Seville,Spain, 2008, pp. 51-66.

[117] F.J. Romero. A Multiscale Modelling Framework Based on P systems, 9th Workshop on MembraneComputing, Edinburgh, U.K. July 2008, 21-22

[118] D. Diaz, I. Pérez-Hurtado, M.J. Pérez-Jiménez, A. Riscos. A P-lingua programming Environment forMembrane Computing, Pre-proceedings of the 9th Workshop on Membrane Computing, Edinburgh,U.K., July 2008, 155-172.

[119] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. A Spiking Neural P system Based Model for HebbianLearning. 9th Workshop on Membrane Computing, Edinburgh, U.K., July 2008, 189-207.

[120] G. Paun. An Introduction to Membrane Computing, After 10 Years, by Means of a (Partial) Glossary.Second International Meeting on Membrane Computing and Biologically Inspired Process Calculi, 2008,1-9.

[121] M. Cardona, M. Colomer, M.J. Pérez-Jiménez, D. Sanuy, A. Margalida. Modeling Ecodystems UsingP Systems: the Bearded Vulture, a Case Study. 9th Workshop on Membrane Computing, Edinburgh,U.K., July 2008, pp. 95-116.

[122] P. Frisco, G. Paun. No Cycles in Compartments. Starting from Conformon-P Systems. 6th Brainstorm-ing Week on Membrane Computing, Seville, Spain, 2008, pp 157-169.

[123] C. Zandron, A. Leporati, C. Ferreti, G. Mauri, M.J. Pérez-Jiménez. On the Computational E�ciencyof Polarizationless Recognizer P Systems with Strong Division and Dissolution. 6th Brainstorming Weekon Membrane Computing, Seville, Spain, 2008, pp. 261-274.

[124] D. Diaz, I. Pérez, M.J. Pérez-Jiménez, A. Riscos. P Lingua: A Programming Language for MembraneComputing. 6th Brainstorming Week on Membrane Computing, Seville, Spain, 2008, pp. 135-155.

[125] R. Gershoni, E. Keinan, G. Paun, R. Piran, T. Ratner. Research Topics Arising from the (Planned) PSystems Implementation Experiment in Technion. 6th Brainstorming Week on Membrane Computing,Seville, Spain, 2008, pp. 183-192.

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[126] R. Ceterchi, M.J. Pérez-Jiménez, A. Tomescu. Sorting Omega Networks Simulated with P systems:Optimal Data Layouts. International Workshop in Computing with Biomolecules, 2008, pp. 29-42.

[127] F.J. Romero, H. Cao, M. Camara, N. Krasnogor. Structure and Parameter Estimation for Cell SystemsBiology Models. 10th Annual Conference on Genetic and Evolutionary Computation (GECCO 10), 2008,pp. 249-256.

[128] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A Riscos. A Fast Solution to the PartitionProblem Using Tissue-Like P systems. International Conference on Bio-Inspired Computing: Theoryand Applications (BIC-TA 2008), 2008, pp. 43-47.

[129] R. Ceterchi, M.J. Pérez-Jiménez, A.I. Tomescu. Simulating the bitonic sort using P systems. 8thInternational Workshop on Membrane Computing. Thessaloniki, Greece, June 2007, pp. 205-226.

[130] D. Díaz, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A cellular solution to subset sumusing division of non-elementary membranes and dissolution, with time and initial resources boundedby log k. 8th International Workshop on Membrane Computing. Thessaloniki, Greece, June 2007, pp.301-315.

[131] R. Borrego, D. Díaz-Pernil, M.J. Pérez-Jiménez. Tissue simulator: A graphical tool for tissue P systems.International Workshop Automata for Cellular and Molecular Computing, 31 August 2007, 23-34.

[132] J. Jack, F.J. Romero, M.J. Pérez-Jiménez, O.H. Ibarra, A. Paun. Simulating apoptosis using discretemethods: A membrane system and a stochastic approach. Language Theory in Biocomputing Workshop,satellite of the Unconventional Computation, UC'07, Kingston, Ontario, Canada, August 15, 2007, 50-63.

[133] M. Cardona, M.A. Colomer, M.J. Pérez-Jiménez, A. Zaragoza. Hierarchical clustering with MembraneComputing. 8th Workshop on Membrane Computing, Thessaloniki, Greece, June 25-28, 2007, pp. 185-203.

[134] D. Díaz-Pernil, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A linear-time solution for theSubset Sum problem with tissue P systems with cell division. Fifth Brainstorming Week on MembraneComputing, Seville, Spain, 2007, 113-130.

[135] C. Graciani, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. A Membrane Computing model for ballisticdepositions. Fifth Brainstorming Week on Membrane Computing, Seville, Spain, 2007, 180-197.

[136] M.J. Pérez-Jiménez, T. Yokomori. Membrane Computing schema based on string insertions. FifthBrainstorming Week on Membrane Computing, Seville, Spain, 2007, 282-297.

[137] D. Ramírez, M.A. Gutiérrez-Naranjo. A Software Tool for Dealing with Spiking Neural P Systems.Fifth Brainstorming Week on Membrane Computing, Seville, Spain, 2007, 299-313.

[138] N. Busi, M.A. Gutiérrez-Naranjo. A Case Study in (Mem)Brane Computation: Generating n2: n>=1.7th International Workshop on Membrane Computing. Leiden, The Netherlands, July 2006. pp. 196-213.

[139] R. Brijder, M. Cavaliere, A. Riscos, G. Rozenberg, D. Sburlan. Membrane systems with externalcontrol. 7th International Workshop on Membrane Compuring. Leiden, The Netherlands, July 2006. pp.177-195.

[140] M. Cardona, M.A. Colomer, M.J. Pérez-Jiménez, A. Zaragoza. Classifying states of a �nite Markovchains with Membrane Computing. 7th International Workshop on Membrane Computing. Leiden, TheNetherlands. July 2006. pp. 229-242.

[141] F.J. Romero, M. Gheorghe, L. Bianco, D. Pescini, M.J. Pérez-Jiménez, R. Ceterchi. Towards probabilis-tic model checking on P systems using PRISM. 7th International Workshop on Membrane Computing.Leiden. The Netherlands. July 2006. pp. 455-474.

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[142] A. Romero, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. Graphical modeling of higher plants usingP systems. 7th International Workshop on Membrane Computing. Leiden, The Netherlands, July 2006,pp. 474-485.

[143] M.J. Pérez-Jiménez. P systems-based modelling of cellular signalling pathways (invited talk). 7th Work-shop on Membrane Computing, Leiden, The Netherlands, July 2006, pp. 54-73.

[144] M. Ionescu, A. Paun, Gh. Paun, M.J. Pérez-Jiménez. Computing with spiking neural P systems: Tracesand small universal systems. Proceedings of the 12th International Meeting on DNA Computing. June2006, Seoul, Korea, June 2006, pp. 32-42.

[145] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. A Membrane Computing viewon tumours. First International Conference on Bio-Inspired Computing: Theory and Applications (BIC-TA 2006), Wuhan, China, September 18-22, 2006, pp. 103-112.

[146] D. Díaz-Pernil, M.A. Gutiérrez, M.J. Pérez-Jiménez, A. Riscos. An e�cient solution to 3-COL withtissue P systems.Workshop on Membrane Computing and Biologically Inspired Process Calculi, MeCBIC2006, Venice, Italy, July 9, 2006, pp. 1-12.

[147] M.A. Gutiérrez, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. Cell-like and tissue-like membranesystems as recognizer devices. Workshop on Nature Inspired Cooperative Strategies for Optimization,NICSO 2006, June 29-30, 2006, Granada, Spain, 173-186.

[148] H. Chen, T-O. Ishdorj, Gh. Paun, M.J. Pérez-Jiménez. Spiking Neural P systems with extended rules.Fourth Brainstorming Week on Membrane Computing, Volume I, Seville, Spain, 2006, 241-265.

[149] M.A. Gutiérrez, M.J. Pérez-Jiménez. Fractals and P systems. Fourth Brainstorming Week on MembraneComputing, Volume II, Seville, Spain, 2006, 65-86.

[150] A. Romero, M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez. The growth of branching structures withP systems. Fourth Brainstorming Week on Membrane Computing, Volume II, Seville, Spain, 2006,253-265.

[151] M.J. Pérez-Jiménez. Tratamiento Computacional de la incertidumbre mediante sistemas celulares conmembranas. Actas del V Congreso de la Sociedad de Lógica, Metodología y Filosofía de la Ciencia enEspaña, 2006, pp. 607-609.

[152] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos. A Simulator for Con�uent P Systems. ThirdBrainstorming Week on Membrane Computing. Seville, Spain, 2005, pp. 169-184.

[153] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F.J. Romero-Campero. Simulating Avascular Tumourswith Membrane Systems. Third Brainstorming Week on Membrane Computing. Seville, Spain, 2005, pp.185-195.

[154] Gh. Paun, M.J. Perez-Jimenez. Foreword. Second Brainstorming Week on Membrane Computing inSevilla 2004, 9 (2005), 629-630.

[155] M.A. Gutiérrez, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. Measuring Tractability with MembraneCreation. Workshop on Theory and Applications of P Systems, TAPS'05, 2005, pp.61-68.

[156] M.J. Pérez-Jiménez, F.J. Romero. Modelling vibrio �scheri's behaviour using P systems. Proceedingsof the Systems Biology Workshop at VIIIth European Conference on Arti�cial Life, 2005, pp.5-9.

[157] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F.J. Romero. Solving SAT with membrane creation.Computability in Europe 2005, CiE 2005. New Computational Paradigms. 2005, pp. 82-91.

[158] F. Bernardini, M. Gheorghe, N. Krasnogor, R.C. Muyinandi, M.J. Pérez-Jiménez, F.J. Romero On Psystems as a modelling tool for biological systems. 6th International Workshop on Membrane Computing.Vienna, Austria, July 2005, pp. 193-213.

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[159] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, A. Riscos, F.J. Romero. On the power of dissolutionin P systems with active membranes. 6th International Workshop on Membrane Computing. Vienna,Austria, July 2005, pp. 373-394.

[160] M.A. Gutiérrez-Naranjo, M.J. Pérez-Jiménez, F.J. Romero. A linear time solution for QSAT withmembrane creation. 6th International Workshop on Membrane Computing. Vienna, Austria, July 2005,pp. 395-409.

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