82
PRENATAL DIAGNOSIS Dr.Ankur Puri 25/10/12 1

Presentation1

Embed Size (px)

Citation preview

Page 1: Presentation1

1

PRENATAL DIAGNOSISDr.Ankur Puri

25/10/12

Page 2: Presentation1

2

INTRODUCTION The frequency of inherited malformations as well as

genetic disorders in newborns account for around 3-5%.These frequency is much higher in early stages of pregnancy, because serious malformations & genetic disorders usually lead to spontaneous abortion. Thereafter, taking into account the severity of the disorders the decision should be taken in regard of subsequent course of the pregnancy , possibilities of treatment, parent's acceptation of a handicapped child but also, in some cases the possibility of termination of the pregnancy according to MTP act 1971.

Page 3: Presentation1

3

• Definition: ‘Prenatal diagnosis is defined as the detection of

abnormalities in the fetus, before birth’

Page 4: Presentation1

4

The purpose of prenatal diagnosis is not simply to detect abnormalities in fetal life and allow termination.It rather have

following goals : Provide a range of informed choice to the couples at

risk of having a child with abnormality.Provide reassurance & remove anxiety, especially

among high risk groups.Allow couples at high risk to know that the presence or

absence of the disorder can be confirmed by testing.Allow the couples the option of appropriate

management ( psychological, pregnancy/delivery, postnatal)

To enable prenatal treatment of the fetus.

Page 5: Presentation1

5

Some Disorders for which PRENATAL DIAGNOSIS is available:

1. Congenital malformations2. Chromosomal disorders3. Non genetic Fetal disorders *Fetal infections, Immune hydrops, DM,Fetal effects of maternal drugs e.g valproic acid

4. Single gene disorders -Multiple malformation synd *Holt oram, Craniosynostosis, Orofacial digital synd

-Hematological disorders *Thalassemias, Hemoglobinopathies, Hemophilia

-Metabolic Disorders *Tay sach, Wilson, MPS, CAH.

-Neuromuscular disorders *Huntington chorea, Myotonic dystrophy, DMD, Fragile X

Page 6: Presentation1

6

-Renal Disoders *AD/AR polycystic kidney disease

-Connective tissue dis / Skeletal dysplasia * Osteogenesis imperfecta, Ehlers Danlos, Achondroplasia, Marfan.

-Skin disorders *Epidermolysis bullosa, Ichthyosis, Ectodermal dysplasia

Page 7: Presentation1

7

INDICATIONS OF PRENATAL DIAGNOSIS1. Advanced maternal age.2. Previous child with a chromosomal abnormality.3. Family history of a chromosomal abnormality.4. Family history of a single gene disorder.5. Family history Neural Tube Defect.6. Family history of other congenital structural

abnormality.7. Abnormalities identified in pregnancy.8. Other risk factors(consanguinity,poor obs.

History,maternal history)

Page 8: Presentation1

8

1. Advanced maternal age• It is the common indication for prenatal diagnosis.• As a woman’s age increases, so does the risk for

chromosome aneuploidy in the fetus.• Most centers offer Amniocentesis or CVS to a women aged

>35yrs,although no standard criterion exists at what age women should be investigated.

Page 9: Presentation1

9

2. Previous child with a chromosomal abnormality

• Previous child with Down’s So due to non dysjunction or unbalanced translocation will give a risk in subsequent pregnancy as, of mother’s age related risk is plus 5%.

• If one of the parents have balanced chromosomal rearrangement (translocation, inversion) causing a serious problem for a previous child due to unbalanced rearrangement, then recurrence risk is between 1-2% & 15-20 %.This risk will depend on nature of rearrangement & nature of segment involved.

Page 10: Presentation1

10

3. Family history of a chromosomal abnormality

• Usually no increase in risk compared to general population since most chromosomal disorders will arise as a result of disjunction than familial rearrangement.

• A history of Down’s So.• However each situation should be confirmed by nature of

chromosome abnormality in affected individual or urgent chromosomal analysis from blood of related parents if normal,no invasive tests.

Page 11: Presentation1

11

4. Family history of a single gene disorder.

• A previous affected child• Affection of one of the parents• Postive family history.• Have a 25-50 % recurrence and prenatal diagnosis should

be offered as many can be diagnosed by DNA analysis and Biochemical testing(achondroplasia, huntington disease, neurofibromatosis)

Page 12: Presentation1

12

5. Family history Neural Tube Defect.

• In the 1st & 2nd degree relatives the risk should be determined

• High risks were diagnosed by Amniocentesis & AFP assessment.

• Ultrasound with MSAFP is method of choice now a days

Page 13: Presentation1

13

6. Family history of other congenital structural abnormality.

• Evaluation of family pedigree• Calculation of the risk.• If increased risk-detailed ultrasound can be offered

between 16-18 weeks of pregnancy, it will detect most serious defects (cranial, cardiac, renal & limb deformity)

Page 14: Presentation1

14

7. Abnormalities identified in pregnancy

• Uncertainty of maternal serum screening & fetal anomaly scanning can make invasive procedure for the diagnosis more necessary.

• Poor fetal growth can be indication for prenatal chromosome analysis as well as for confirmation of a serious & non viable abnormality.

Page 15: Presentation1

15

8. Other risk factors(consaguinity,poor obs. History,maternal history)

• Parental consanguinity leading to hereditary disorder or congenital anomalies(offer a detailed USG)

• Poor obst history as recurrent miscarriage or still birth indicating high risk in future pregnancy(offer USG of fetus & chromosomal analysis of parents)

• Maternal illness as poorly controlled DM or maternal epilepsy treated with some drugs such as sodium valproate(offer a detailed USG)

Page 16: Presentation1

16

METHODS OF PRENATAL DIAGNOSISNON INVASIVE

TECHNIQUESFetal visualizationMaternal serum screeningSeparation of fetal cells

from the mother's blood

INVASIVE TECHNIQUESFetal visualizationFetal tissue samplingCytogenetics Molecular genetics

Page 17: Presentation1

17

NON INVASIVE TECHNIQUESFETAL VISUALISATION1. ULTRASONOGRAPHY2. FETAL ECHOCARDIOGRAPHY 3. MAGNETIC RESONANCE IMAGING (MRI)

Page 18: Presentation1

18

FETAL VISUALISATION1. ULTRASONOGRAPHY : -It is a noninvasive procedure for imaging fetal anatomy & is harmless to both the fetus and the mother. -The developing embryo can first be visualized at about 6 weeks gestation. Recognition of the major internal organs

& extremities to determine if any are abnormal can best be accomplished between 16 to 20 weeks gestation. - Thus USG is used in the 2nd trimester to identify major fetal structural anomalies & fetal anatomical markers. -Ultrasound also is used to guide invasive sampling, such as amniocentesis, CVS, cordocentesis, & various fetal biopsies

Page 19: Presentation1

19

US markers of fetal congenital abnormalities or genetic syndromes found in first trimester scanning [at 11-13weeks' gestation]

Page 20: Presentation1

20

2D US

Page 21: Presentation1

21

2D US

Page 22: Presentation1

22

2D US

Page 23: Presentation1

23

2D US

Page 24: Presentation1

24

2D US

Page 25: Presentation1

25

3D & 4D US

• In recent years three-dimensional ultrasound (3D) & four-dimensional ultrasound (4D) have started to play an increasing role in prenatal diagnosis. They can be applied in assessing facial features, central nervous system abnormalities and skeletal defects

Page 26: Presentation1

26

4D US

Page 27: Presentation1

27

Ultrasonography cont…

• Although an ultrasound examination can be quite useful to determine the size & position of the fetus, the size & position of the placenta, the amount of amniotic fluid, & the appearance of fetal anatomy, there are limitations to this procedure as findings are based upon views of the fetus, the estimated gestational age, sonographer experience, & the degree of anomaly severity.

Page 28: Presentation1

28

FETAL VISUALISATION2. FETAL ECHOCARDIOGRAPHY

-Fetal echocardiography is capable of diagnosing most significant congenital heart lesions as early as 17-19 wk of gestation. -When this technique is used with duplex or color flow Doppler, it can identify a number of major structural cardiac defects & rhythm. -Fetal echocardiography is recommended in cases where cardiac defects are suspected.

Page 29: Presentation1

29

FETAL ECHOCARDIOGRAPHY : cont…

Page 30: Presentation1

30

FETAL VISUALISATION3. MAGNETIC RESONANCE IMAGING (MRI) • MRI is used in combination with ultrasound, usually

at or after 18 weeks‘ gestation. MRI provides a tool for examination of fetuses with large or complex anomalies, and visualization of the abnormality in relation to the entire body of the fetus. Apparently MRI is a risk-free method

Page 31: Presentation1

31

MAGNETIC RESONANCE IMAGING (MRI)

Page 32: Presentation1

32

MATERNAL SERUM SCREENING Maternal serum screening is used to identify women at increased risk of having a child with trisomies 18 or 21 or an open neural tube defect (NTD), while posing no risk to the pregnancy. Screening in the first trimester involves the measurement of PAPP-A (pregnancy associated plasma protein A) & free b HCG (beta human chorionic gonadotropin) levels in maternal serum. These measurements used in conjunction with USG scanning

that includes assessment of USG markers such as nuchal translucency (NT) thickness & absence/presence of the nasal bone (NB) gives a detection rate of abt. 85% while alone the detection rate with PAPP-A & bHCG was around 65 %

Page 33: Presentation1

33

MATERNAL SERUM SCREENING Levels of MSAFP ( alpha Feto protein ), human chorionic

gonadotrophin (HCG) & unconjugated oestriol (UE3) are measured between 15 & 18 weeks gestation.

These substances are of fetal origin & cross from the amniotic fluid into maternal circulation via the placenta.

Low maternal serum AFP, low UE3 and/or elevated HCG levels are associated with increased risks of fetal Down syndrome,

whereas low levels of all three substances suggests increased risks for trisomy 18 or triploidy.

High levels of AFP are associated with increased risk of neural tube & abdominal wall defects; while high levels of HCG can be associated with increased risk

for pregnancy complications.

Page 34: Presentation1

34

MATERNAL SERUM SCREENING Down So : 1st Trimester Screening Tests• Maternal Serum Markers -Preg. asso. Placental Protein A (PAPP-A) -Free ß hCG

• Fetal Marker- Nuchal thickness

2nd Trimester Screening Tests • Maternal Serum Markers -AFP -E3 Triple test 70% -hCG Quadruple -Inhibin A test

85%65%

60-75%

76%

94%

Page 35: Presentation1

35

MATERNAL SERUM SCREENING Trisomy 18 or Triploidy : The level of all three substances ( MSAFP, UE3 and HCG ) is low in trisomy 18

Page 36: Presentation1

36

MATERNAL SERUM SCREENING Neural Tube Defects & Abdominal Wall Defects : • AFP is produced by the yolk sac & later by the liver; it enters the

amniotic fluid & then the maternal serum via fetal urine. Therefore MSAFP level can be used to determine the AFP levels from the fetus.

• In the condition of an open NTD (eg, anencephaly, spina bifida) & abdominal wall defects in the fetus, AFP diffuses rapidly from exposed fetal tissues into amniotic fluid, and the MSAFP level rises.

• Also, a NTD can be distinguished from other fetal defects, such as abdominal wall defects, by the use of an Acetylcholinesterase test carried out on amniotic fluid. If the level of acetylcholinesterase rises along with AFP, it is suspected as a condition of a NTD.

Page 37: Presentation1

37

MATERNAL SERUM SCREENING• AFP levels are also elevated when the fetus has congenital

nephrosis, or intestinal atresias.• However, the MSAFP levels also increase with gestational age,

gestational diabetes, twins, pregnancies complicated by bleeding, & in association with intrauterine growth retardation.

Page 38: Presentation1

38

Separation of fetal cells from the mother's blood

A technique currently being developed for clinical use involves isolating fetal cells from maternal blood to analyse fetal chromosomes and/or DNA. Ordinarily, only a very small number of fetal cells enter the maternal circulation; but once they enter,can be readily identified, they will be accessible for analysis by a variety of techniques, without the risks of complications or miscarriage associated with invasive procedures (CVS & amniocentesis).

These cells can be collected safely from approximately 12-18 weeks' gestation onward.

Nucleated fetal red blood cells (erythroblasts) are currently the ideal candidates for analysis, although leucocytes & trophoblast cells may also be identified

Page 39: Presentation1

39

Separation of fetal cells from the mother's blood

Fetal blood cells can then be analyzed for the diagnosis of genetic disorders using FISH, PCR etc.

Fetal cells separated from a mother's blood have been successfully used in the diagnosis of cystic fibrosis, sickle cell anemia, and thalassemia in a fetus.

A. Maternal RBCs B. Fetal RBCs (nucleated)

Page 40: Presentation1

40

INVASIVE TECHNIQUESFetal visualization Fetal tissue samplingCytogenetics Molecular genetics

Page 41: Presentation1

41

INVASIVE TECHNIQUESFetal visualization

-Embryoscopy -Fetoscopy

Page 42: Presentation1

42

Fetal visualization-EmbryoscopyEmbryoscopy is performed in the first trimester. In this technique, a rigid endoscope is inserted via the

cervix in the space between the amnion and the chorion, under sterile conditions and ultrasound guidance, to visualize the embryo for the diagnosis of structural malformations.

Page 43: Presentation1

43

Fetal visualization-Embryoscopy

Page 44: Presentation1

44

Fetal visualization-FetoscopyFetoscopy is performed during the second trimester (after

16 weeks’ gestation). In this technique, a fine-caliber endoscope is inserted into

the amniotic cavity through a small maternal abdominal incision, under sterile conditions and ultrasound guidance, for the visualization of the embryo to detect the presence of subtle structural abnormalities.

It also is used for fetal blood and tissue sampling. Fetoscopy is associated with a 3-5% risk of miscarriage;

Page 45: Presentation1

45

Fetal visualization-Fetoscopy

Page 46: Presentation1

46

Fetal Tissue Sampling Amniocentesis Chorionic villus sampling (CVS) Percutaneous umbilical blood sampling (PUBS) Percutaneous skin biopsy Other organ biopsies, including muscle & liver

biopsy

Page 47: Presentation1

47

Fetal Tissue Sampling Amniocentesis : Amniocentesis is an invasive, well-established, safe,

reliable, & accurate procedure & can be performed at 10-14 weeks of gestation (early amniocentesis) but usually done at 16-18 weeks of gestation.

Although early amniocentesis is ass. with a pregnancy loss rate of 1 – 2 % & an increased incidence of clubfoot.

It is performed under ultrasound guidance.A 22-gauge needle is passed through the mother's lower

abdomen into the amniotic cavity inside the uterus, & 10-20 mL of amniotic fluid ( that is replaced by fetus within 24hrs ) that contains cells from amnion, fetal skin, fetal lungs, and urinary tract epithelium are collected.

Page 48: Presentation1

48

Fetal Tissue Sampling Amniocentesis :

Page 49: Presentation1

49

Fetal Tissue Sampling Amniocentesis :1. The Cells are grown in culture for chromosomal,

biochemical, & molecular biologic analyses.2. The Supernatant amniotic fluid is used for the

measurement of substances such as AFP, AChE,bilirubin & pulmonary surfactant

3. In the third trimester of pregnancy, the amniotic fluid can be analyzed for determination of fetal lung maturity.

The results of cytogenetic and biochemical studies on amniotic cell cultures are more than 90% accurate.

Risks with amniocentesis are rare but include 0.5-1.0% fetal loss and maternal Rh sensitization.

Page 50: Presentation1

50

Fetal Tissue Sampling Chorionic villus sampling (CVS) : Under USG guidance, a sample of placental tissue is obtained

through a catheter places either transcervically or transabdominally.

Performed at or after 10 wks’ gestation,CVS provides the earliest possible detection of a genetically abnormal fetus through analysis of trophoblast cells.

Transabdominal CVS can also be used as late as the 3rd trimester when amniotic fluid is not available or when fetal blood sampling cannot be performed.

CVS, if preformed before 10 wks’ gestation , can be ass. with an increased risk of fetal limb reduction defects & oromandibular malformations.

Page 51: Presentation1

51

Fetal Tissue Sampling Chorionic villus sampling (CVS) : Transabdominal

Page 52: Presentation1

52

Fetal Tissue Sampling Chorionic villus sampling (CVS) : Transcervical

Page 53: Presentation1

53

Fetal Tissue Sampling Chorionic villus sampling (CVS) : Direct preparations of rapidly dividing cytotrophoblasts can be

prepared, making a full karyotype analysis available in 2 days. Although direct preparation minimize maternal cell contamination, most centers also analyse cultured trophoblast cells, which are embryologically closer to the fetus.This procedure takes 8 – 12 days.

In approximately 2% of CVS samples, both karyotypically normal & abnormal cells are identified.B’coz CVS acquired cells reflect placental constitution, in these cases, amniocentesis is typically performed as a followup study to analyze fetal cells.Approximatally 1/3rd of CVS mosaicisms are confirmed in the fetus through amniocentesis.

Page 54: Presentation1

54

Fetal Tissue Sampling Percutaneous umbilical blood sampling (PUBS)

(cordocentesis) PUBS is preformed under USG guidance from the 2nd trimester until term. PUBS can provide diagnostic samples for cytogenetic,

hematologic, immunologic, or DNA studies: it can also provide access for treatment in utero.

An anterior placenta facilitates obtaining a sample close to the cord insertion site at the placenta.

Fetal sedation is usually not needed. PUBS has a 1% - 2% risk of fetal loss, along with complication

that can lead to a preterm delivery in another 5%.

Page 55: Presentation1

55

Fetal Tissue Sampling Percutaneous umbilical blood sampling (PUBS)

(cordocentesis)

Page 56: Presentation1

56

Fetal Tissue Sampling Percutaneous skin biopsy (Preimplantation Biopsy

or Preimplantation Genetic Diagnosis) : The most frequent candidates are parents with family histories

of serious monogenic disorders & translocations, who are therefore at increased risk for transmitting these conditions to future generations.

Polar body & blastomere testing are the two primary methods of PGD.

In Polar Body Testing, positive test results in two polar bodies ensure that the egg itself is unaffected – therefore, the mutation has segregated to the polar body, not to the developing ovum. Once an egg is found to be unaffected, it is fertilized via traditional in vitro fertilization (IVF) & implanted into the uterus.

Page 57: Presentation1

57

Fetal Tissue Sampling Percutaneous skin biopsy (Preimplantation Biopsy or

Preimplantation Genetic Diagnosis) : Blastomere PGD first requires traditional in vitro fertilization,

after which cells are grown to the 8-cell stage. One or two cells are harvested & analysed, & an unaffected blastocyst is implanted into the uterus.

An advantage to preconception testing over traditional postconception prenatal diagnosis is that it allows parents to avoid the possibility of receiving abnormal prenatal diagnosis results, & thus the difficult decisions associated with pregnancy management and/or maintenance.

PGD can be laborious, time-consuming & expensive. Complicating factors include a high rate of polyspermia, & a small amount of DNA in polar bodies (making it difficult to amplify) which can produce less definitive test results.

Page 58: Presentation1

58

Fetal Tissue Sampling Other organ biopsies, including muscle & liver

biopsy : Fetal liver biopsy is best performed between 17-20 weeks'

gestation under ultrasound guidance.Fetal liver biopsy is needed to diagnose inborn errors of

metabolism, such as glucose-6-phosphatase deficiency , glycogen storage disease type IA & nonketotic hyperglycemia.

Fetal muscle biopsy is carried out under ultrasound guidance at about 18 weeks' gestation to analyze the muscle fibers histochemically for prenatal diagnosis of Becker-Duchenne muscular dystrophy.

Page 59: Presentation1

59

Cytogenetic Investigations Chromosome Analysis ( Karyotype Analysis ) Fluorescence in situ Hybridization (FISH)

Page 60: Presentation1

60

Cytogenetic Investigations Chromosome Analysis : Chromosome analysis is a technique used to identify

aneuploidy, microdeletions, microduplications & major structural aberrations.

The most common method of detecting aneuploidy is karyotype analysis, wherein metaphase cells are examined microscopically & the number of chromosomes counted.

Typically 10–15 cells are analysed to rule aneuploidy in or out.

Page 61: Presentation1

61

Cytogenetic Investigations Chromosome Analysis Karyotype Analysis : Each chromosome pair has a unique banding

pattern that can be seen with various stains. The most common method of karyotype analysis is Giemsa (G)

banding, wherein chromosomes are denatured (with trypsin), revealing a pattern of light & dark bands.

Counting the number of staining chromosomes allows for detection of aneuploidies.

Analysing for the absence, presence, rearrangement, etc. of these bands allows for detection of larger deletions, duplications and structural aberrations.

Although G banding is typically used first to analyse prenatal specimens, various other banding techniques (including quinacrine (Q), reverse (R), centromeric heterochromatin (C) & high-resolution banding) may be used to analyse different portions of particular chromosomes.

Page 62: Presentation1

62

Cytogenetic Investigations• Chromosome Analysis ( Karyotype Analysis )

Normal Karyotype

Page 63: Presentation1

63

Cytogenetic Investigations• Chromosome Analysis ( Karyotype Analysis )

Down Syndrome Karyotpe

Page 64: Presentation1

64

Cytogenetic Investigations Fluorescence in situ Hybridization (FISH) :

Page 65: Presentation1

65

Cytogenetic Investigations Fluorescence in situ Hybridization (FISH) : FISH is mainly used to detect the presence or absence of

microdeletions, microduplications & aneuploidy without the full effort associated with DNA sequencing or complete karyotype analysis

This three-step technique allows specific DNA sequences or chromosomes to be visualized microscopically.

1. A specific, single-stranded DNA probe is hybridized to its complementary, target DNA sequence, while the cell is in prophase, metaphase or interphase;

2. fluorescent antibodies are then hybridized to the probe DNA sequence;

3. finally, the fluorescent signals are examined under the microscope.

Page 66: Presentation1

66

Cytogenetic Investigations Fluorescence in situ Hybridization (FISH) :

Page 67: Presentation1

67

Cytogenetic Investigations Fluorescence in situ Hybridization (FISH) :

Human chromosome 1 painting probe (green) Terminal band painting probe centromere probe

Page 68: Presentation1

68

Cytogenetic Investigations Fluorescence in situ Hybridization (FISH) : FISH analysis for common aneuploidies (involving chromosomes 13,

18, 21, X and Y) is often performed by simultaneously applying specific multicoloured centromeric probes. In fetal trisomies, three probes are present for a specific chromosome, while monosomies show only one.

(a).A nucleus has been hybridized with probes for chromosomes 18 (aqua), X (green) and one Y(red).(b) A

nucleus has been hybridized with probes for chromosomes 13 (green) and 21 (red).

Page 69: Presentation1

69

Cytogenetic Investigations Fluorescence in situ Hybridization (FISH) :Microdeletions/microduplications detectable by fluorescence in situ

hybridization (FISH)DISORDER CHROMOSOMAL BAND FINDING

Angelman syndrome 15q12(maternal) Microdeletion

Duchenne Muscular Dystrphy Xp21 Microdeletion

Prader-Willi Syndrome 15q12(paternal) Microdeletion

Retinoblastoma 13q14 Microdeletion

α- thalassemia 16p13 Microdeltion

WAGR syndrome 11q13 Microdeletion

Page 70: Presentation1

70

Direct DNA Analysis Linkage Analysis(indirect DNA analysis) DNA Sequencing

Molecular genetics

Page 71: Presentation1

71

Direct DNA analysis :• Direct mutation analysis involves analysing a target segment

of DNA for the presence of a specific mutation. Like FISH, it requires knowledge of the correct sequence for the specific gene or DNA segment before analysis. Once known, the sample sequence may be compared to the known, ‘model’, genomic sequence in a variety of methods, as described below :

Mutation analysis with restriction enzymes.Sequencing of restriction enzyme products.Allele-Specific Oligonucleotide (ASO) analysis.

Molecular genetics

Page 72: Presentation1

72

Direct DNA analysis :Mutation analysis with restriction enzymes : If the putative mutation is known to alter the recognition for a

splice site, direct analysis by restriction enzyme assay is possible. The presence of a mutation can be detected by digesting control and sample DNA with the same restriction enzymes (known to cut the DNA at a specific splice site) and then analysing resultant DNA fragments (called Restriction Fragment Length Polymorphisms, or RFLPs ) for differences by Southern blotting. Those segments containing mutation(s) at or near a splice site are identifiable because they were not cut by a restriction enzyme, and are therefore longer, appearing higher on the Southern blot gel. (Longer fragments do not migrate as quickly or as far as shorter fragments.) This technique is used in genetic testing for sickle cell anaemia.

Molecular genetics

Page 73: Presentation1

73

Mutation analysis with restriction enzymes :

Page 74: Presentation1

74

Direct DNA analysis :Sequencing of restriction enzyme products :

• Disorders secondary to deletion of DNA ( e. g α thalassemia, DMD, CF & growth harmone deficiency) can be detected by the altered size of DNA segments produced following a Polymerase Chain Reaction(PCR)

• DNA sequences that have been cut with restriction enzymes can also be sequenced by a specialized amplification technique. Copies of a particular piece of DNA(cut by restriction enzymes) are placed into four vials & amplified by polymerase chain reaction (PCR).

• Fragments from the vials are then allowed to migrate, in parallel, down a Southern blot gel.

• The shortest fragments travel furthest, the longer segments remain closer to the top. From top to bottom, the banding pattern produced represents fragments that decrease in size by one nucleotide base. The DNA sequence can therefore be read from the shortest, single-base strand at the bottom of the gel, up to the entire sequence length at the top

Molecular genetics

Page 75: Presentation1

75

Direct DNA analysis :Allele-Specific Oligonucleotide (ASO) analysis :• Direct detection of a DNA mutation can also be accomplished by

allele specific oligonucleotide analysis.• If the PCR –amplified DNA is not altered in size by deletion or

insertion, recognition of mutated DNA sequence can occur by hybridization with the known mutant allele.

• ASO analysis allows direct DNA diagnosis of Tay-Sachs Disease, alpha & beta thalassemia, Cystic fibrosis & phenylketonuria

Molecular genetics

Page 76: Presentation1

76

Linkage Analysis(indirect DNA analysis) : • Linkage analysis is a means of indirectly detecting a patient’s

mutation status, when several family members are known to be affected with the same genetic disorder, & when an exact mutation is not known.

• DNA from affected & unaffected family members is analysed for polymorphisms such as microsatellite repeats, restriction fragment length polymorphisms (RFLPs) and variable number tandem repeats (VNTRs)

Molecular genetics

Page 77: Presentation1

77

DNA Sequencing :• DNA sequencing for many disorders has revealed that a

multitude of different mutations within a gene can result in same clinical disease.

• For Example,Cystic Fibrosis can result from more than 1,000 different mutations.

• Therefore, for any specific disease, prenatal diagnosis by DNA testing may require both Direct & Indirect methods.

Molecular genetics

Page 78: Presentation1

78

®PRENATAL TREATMENT• In the most situations the diagnosis of prenatal

abnormalities has a subsequent option of termination of the pregnancy.

• While this applies in most situations, there is cautious optimism that with the advent of gene therapy prenatal diagnosis will, in time, lead to effective treatment in utero.

• Example-Treatment of the autosomal recessive disorder-Congenital Adrenal Hyperplasia (CAH). Affected female are born with virilisation of the external genitalia. There is an evidence that this can be prevented by powerful steroid therapy at early gestational age.

Page 79: Presentation1

79

ETHICS & LEGAL ASPECTS• Before screening or testing pregnancies for underlying genetic

disorders, it is important to consider the ethics of a given situation. Genetic diagnosis may affect decisions about maintaining or ending a pregnancy, counselling should be done in such cases.

• Prenatal diagnosis in high risk cases should be done at appropriate gestational age as according to MTP act pregnancies can be terminated only upto 20 weeks of gestation when Substantial risk of physical or mental abnormalities in the fetus as to render it seriously handicapped.

Page 80: Presentation1

80

SUMMARY

Page 81: Presentation1

81

Page 82: Presentation1

82THANK YOU