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Keeling et al.
MMETSP
project PLOS
Bio 2014
Chrysochromulina tobin
Environmental
Sample Antibiotic
treatments
Reiterative
flow cytometry
Sequencing
Cleaned
Culture
Lab
conditions
Blast2GO
•Genomes:
•Mitochondrial
•Chloroplast
•Nuclear
•Transcriptomes:
•7 time points over photoperiod
•Proteomes
•Whole cell
•Lipid body isolation
KEGG database
“Omes” competed:
High throughput
sequencing (Illumina
and 454)
Assembly
Lipid pathway from
Radakovits et. al. 2010
Bigelow et. al. (Algal Research, 2013)
• DHA
• EPA
• Stearic
• Palmitic
• Myristic
• …etc…
Total lipid ~17mg/L
Hovde et. al. (in final preparation)
Acknowledgements
Monnat Lab (UW)
•Ray Monnat
•Ryan Sinit
Cattolico Lab (UW)
•Rose Ann Cattolico
•Chloe Deodato
•Heather Huntsperger
•Will Yost
•John Patterson
•Stephanie Brunelle
•Bill Hardin
Los Alamos Natl Lab
•Shannon Johnson
•Shawn Starkenburg
Rocap Lab (UW)
•Gabrielle Rocap
•Cedar McKay
Funding and support:
Pacific Northwest Natl.
Lab
•Mary Lipton