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Membrane injury by pore-forming proteinsMirko Bischofberger, Manuel R Gonzalez and F Gisou van der Goot
The plasma membrane defines the boundary of every living cell,
and its integrity is essential for life. The plasma membrane may,
however, be challenged by mechanical stress or pore-forming
proteins produced by the organism itself or invading
pathogens. We will here review recent findings about
pore-forming proteins from different organisms, highlighting
their structural and functional similarities, and describe the
mechanisms that lead to membrane repair, since remarkably,
cells can repair breaches in their plasma membrane of up to
10 000 mm2.
Address
Ecole Polytechnique Federale de Lausanne, Global Health Institute,
Station 15, CH-1015 Lausanne, Switzerland
Corresponding author: van der Goot, F Gisou
Current Opinion in Cell Biology 2009, 21:589–595
This review comes from a themed issue on
Membranes and organelles
Edited by Greg Odorizzi and Peter Rehling
Available online 11th May 2009
0955-0674/$ – see front matter
# 2009 Elsevier Ltd. All rights reserved.
DOI 10.1016/j.ceb.2009.04.003
IntroductionThe etymological definition of a cell (from latin cellula,
‘small compartment’) implies a boundary structure
enclosing a compartment. Life, as known today, would
not be possible without plasma membranes, and their
formation has most probably been a crucial event during
evolution [1]. Given that their integrity is required for
survival, membranes constitute a sort of cellular Achilles
heel, sensitive both to mechanical rupture and molecule
driven alterations. Not surprisingly, many organisms have
developed pore-forming molecules designed to disturb
membrane integrity for a variety of purposes [2–5]. We
will here limit ourselves to discussing pore-forming
proteins (PFPs) as opposed to peptides. These molecules
are found in many phyla and share the remarkable prop-
erty of being synthesized as soluble proteins that can
convert, in a controlled manner, to transmembrane pores.
Many pathogenic microorganisms – bacteria or parasites –produce PFP to promote infections. In fact bacterial pore-
forming toxins (PFT) are the best characterized family of
PFPs and studies on these toxins has paved the way for a
better understanding of PFPs encountered in other sys-
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tems [2]. Not only monocellular organisms produce PFPs.
In humans for example, pore formation by perforin is
involved in counteracting infection by microorganisms
[6], while pore formation by the Bcl2 family member Bax
triggers apoptosis [7]. Furthermore, it has been proposed
that the causative agents of Alzheimer or Parkinson
disease are proteins capable of adopting pore-forming
configurations that lead to membrane injury [8]. Inter-
estingly, cells have evolved mechanisms that allow them
to cope with breaches in their plasma membrane – pro-
viding the insult is not overwhelming – and to restore
plasma membrane continuity [4,9,10].
After briefly reviewing the mode of action and purpose of
PFTs, we will cover recent findings that illustrate the
parallel between PFTs, proteins of the immune system,
and intermediates in fibril formation in neurodegenera-
tive diseases. Finally we will describe the cellular con-
sequences of breaches in the plasma membrane, how cells
sense such events and respond to them. For structural
aspects of PFPs, the reader is referred to the numerous
recent reviews [4,5,8,11–13].
Pore-forming toxins (PFTs)Despite a great diversity of sequences and structures, all
bacterial PFTs follow the same overall mode of action [3]
(Figure 1A). They are secreted by the bacterium as
soluble proteins that can diffuse toward target cells to
which they bind via specific receptors [3,4]. For many
PFTs, the receptors have been identified and include
transmembrane or GPI-anchored proteins, lipids or clus-
ter of lipids [14–18]. Most, if not all PFTs, require
subsequent oligomerization for channel formation to
occur. This step is generally promoted by cholesterol-
rich membrane domains, or lipid rafts, that act as con-
centration platforms [3], although exceptions have been
reported [19]. Oligomerization occurs in a circular manner
leading to ring-like structures. The stochiometry, and
thus the pore diameter, depends on the toxin: Staphylo-
coccal a-toxin and Aeromonas aerolysin form heptameric
pores, Staphylococcal leukotoxins octameric pores [4],
Escherichia coli ClyA 13-meric pores [20], and members
of the Cholesterol-dependent Cytolysins (CDCs) pores of
variable sizes that can be formed of up to 50 monomers
(diameter 30–50 nm) [11]. Channel formation leads to
permeabilization of ions and small molecules such as
ATP, and, in the case of CDCs, to proteins [4,11].
Purposes of pore formationPore formation can serve multiple purposes, largely
depending on the site, and amount, of toxin production.
Since PFTs have the ability to kill almost any cell and, in
Current Opinion in Cell Biology 2009, 21:589–595
590 Membranes and organelles
Figure 1
Similarities of pore-forming proteins (PFPs). (A) Mechanism of action for different PFPs. Bacterial, parasitic, and PFPs from the immune system first
have to bind to the membrane, before they can oligomerize and insert into the lipid bilayer to form the functional pore. How endogenous proteins from
conformational diseases such as b-amyloid or a-synuclein form pores remains to be established. (B) Structural similarities between the bacterial PFT
perfringolysin O (PFO), the MACPF domain that also occurs in PFPs from the immune system and the parasitic PFP TgPLP1 from Toxoplasma gondii
(after a homology model [32�]). The five helices (in black) surrounding the common b-sheet are thought to insert into the lipid bilayer during pore
formation. (C) Pores formed by different PFPs visualized by electron microscopy (with permission from [67,36,68]).
particular, cells of the immune system, they will contrib-
ute to spreading of the bacterium by subverting antimi-
crobial control. Pore formation in the plasma membrane
may also increase the availability of nutrients to the
bacterium. Gram-positive bacteria, such as Streptococci,
which lack secretion systems allowing the injection of
bacterial proteins into the target cell cytosol [21], may
utilize pore formation for protein delivery [22]. Finally,
pore formation allows certain bacteria that have entered
target cells by phagocytosis, to escape from the phago-
somes and replicate in the cytoplasm. The best studied
example is Listeriolysin O (LLO), produced by Listeriamonocytogenes [23]. While LLO can form pores at the
plasma membrane of target cells, its activity is more
potent in the phagosome, partly owing to an increase
in pore-forming ability at acidic pH [24]. It was, however,
recently shown that LLO gets additionally activated by a
lysosomal thiol reductase called GILT [25�], reminding
us that the initial name of CDCs was thiol-activated
toxins [26]. But phagosome lysis is only observed when
LLO activity is sufficient. When LLO activity is low,
Listeria is observed in a spacious late endosome-like
Current Opinion in Cell Biology 2009, 21:589–595
vacuole [27��]. This vacuole was found to form in an
LLO-dependent manner (LLO deficient Listeria are
targeted to lysosomes), to be non-acidic, of autophagic
origin and to allow slow replication of the bacterium
[27��]. Thus depending on the LLO activity, this PFT
will allow the bacterium to replicate in the target cell
cytoplasm or to persist in an autophagic-like vacuole.
Pore-forming proteins in eukaryoticorganismsCytotoxic T cells (CTLs) and hepatocytes produce PFPs,
perforin (PF) and the 9th component (C9) of comp-
lement, respectively. Perforin is released upon degranu-
lation of CTLs. It forms transmembrane pores that allow,
through mechanisms that remain debated, translocation
of granzymes into the cytoplasm of pathogen-infected
cells, leading to their apoptotic death. C9 also forms pores
and is involved in the last step of the assembly of the
membrane attack complex (MAC). The lytic membrane
inserting part of both proteins is formed by the MACPF
domain [6]. Two recent structural studies revealed the
similarity between the MACPF domain and the bacterial
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Membrane injury by pore-forming proteins Bischofberger, Gonzalez and van der Goot 591
Figure 2
Different cellular sites where pore formation can occur. After pore
formation on the plasma membrane, ions such as K+ or Ca2+ flow along
their respective gradients. Many signaling pathways, such as the Map
kinase p38 are then activated. Exit of ATP leads to activation of the P2X
receptors, which in turn trigger opening of the pannexin hemichannels
enhancing changes in ion composition and loss of the membrane
potential. Pore formation in mitochondria leads to loss of mitochondrial
potential and release of cytochrome C that induces apoptosis. Lesion in
membranes of endosomes (LE) and/or lysosomes leads to the leakage
of lysosomal enzymes into the cytoplasm.
CDCs [28��,29��] (Figure 1B), which was unexpected
considering the lack of sequence similarity.
As a side note, the revealed similarity between MACPF
and CDCs is not the first example of convergence be-
tween bacterial PFTs and mammalian PFPs. In the
1990s, pro-apoptotic and anti-apoptotic members of the
Bcl2 family were found to have the same overall fold as
the pore-forming domain of the bacterial diphtheria toxin
(for review see [30]). It was subsequently shown that, for
example, the pro-apoptotic protein Bax can form oligo-
meric protein-permeable channels in the outer mem-
brane of mitochondria (reviewed in [7]).
MACPF domain containing proteins are also found in
Apicomplexa parasites, including Toxoplasma and Plas-modium [31]. Modeling of the Perforin-Like Protein 1
(TgPLP1) of Toxoplasma gondii showed that its structure
is indeed similar to that of CDCs [32�] (Figure 1B). T.gondii enters mammalian cells using an unusual gliding
mechanism and replicates in a parasitophorous vacuole
from which it escapes before exiting the cells and spread-
ing to other sites [33]. TgPLP1 was found to be required
for the egress of Toxoplasma from the parasitophorus
vacuole [32�], reminiscent of the role of LLO during
Listeria infection.
In Plasmodium, perforin like proteins (PLPs) were found
to be important for the traversal of the mosquito midgut
epithelium [34] and the mammalian hepatic cells
[35]. Cell traversal results in a characteristic wounding
of the plasma membrane. Since wounding has not been
observed for Toxoplasma, the PLPs from the two parasites
are thought to play different roles.
Pore formation and neurodegenerativediseasesAs mentioned above, pore formation by PFPs requires
oligomerization. Moreover, PFPs are often rich in b-sheet
and their oligomerization leads to highly stable structures.
Highly stable b-rich oligomeric structures are also
encountered during neuron degenerative diseases such
as Alzheimer or Parkinson disease [8]. These diseases are
characterized by the formation of fibrillar amyloid depos-
its [36,37�], but the link between the deposits and disease
is unclear. It has been proposed that intermediate oligo-
meric species that form before fibril formation might be
the toxic form. Electron microscopy analysis of such
intermediates revealed that they form ring-shape struc-
tures reminiscent of bacterial PFTs [8] (Figure 1C) and it
was subsequently shown that they have membrane-per-
forating activity [38]. Quite remarkably, cross-reactivity
of conformation specific antibodies was observed be-
tween amyloid ring-like intermediates and staphylococcal
a-toxin [37�]. Further similarities with PFTs include the
promotion of amyloid ring formation by lipids [37�] and
cholesterol dependent pore formation [39,40].
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Consequences of pore formationThe consequences of the formation of non-selective
transmembrane pores, or occurrence of membrane
damage, will depend on where the event occurs
(Figure 2). Formation of pores in mitochondria, by mem-
bers of the Bcl2 family [7] or bacterial toxins [41], may
lead to loss of mitochondrial potential, leakage of toxic
compounds into the cytoplasm, and triggering of apop-
tosis. It was recently proposed that rupture of lysosomal
membranes leads to the activation of the Nalp3-
inflammasome, a multi-subunit danger sensing complex
involved in the activation of caspase-1 and subsequently
interleukin-1b [42], through the spilling of lysosomal
enzymes into the cytoplasm [43].
But most PFPs target the plasma membrane, which is also
the victim of mechanical rupture. The primary effect of
impaired plasma membrane integrity is a change in
cytoplasmic ion composition and loss of membrane poten-
tial (Figure 2). In particular, concentrations of potassium
decrease and of calcium increase, and this has numerous
secondary consequences, some of which will be described
below. Interestingly, ion flow might not be solely
mediated by the pores themselves. It has recently been
shown that E. coli hemolysin (HlyA) takes advantage of a
cellular amplification system to inflict a full-blown
response in erythrocytes, that is, hemolysis [44�]. Skals
et al. found that extracellular ATP, presumably released
Current Opinion in Cell Biology 2009, 21:589–595
592 Membranes and organelles
through the HlyA pores, activates PX2 receptors – ligand-
gated cation channels activated by extracellular ATP –which in turn trigger the opening of the hemi-channel
pannexin, as previously shown [45,46] (Figure 2). The
fact that, in the 1960s–1970s, suramin, a non-selective
P2X antagonist, was found to affect the hemolytic activity
of both Staphylococcal a-toxin [47], and complement [48]
suggests that P2X mediated amplification of plasma
membrane permeabilization might occur for other PFPs.
The secondary consequences of pore formation, many of
which are probably triggered by changes in the cyto-
plasmic ion composition, are numerous and the list is
continuously extending. We will restrict ourselves to
three selected recent examples that illustrate the diver-
sity of the responses (for more extensive review see [3]).
Through mechanisms that remain to be unraveled, PFTs
were found to activate the p38 MAP kinase pathway [49–51]. This activation was found to be important for recovery
of intracellular ATP levels and cell survival [50,51]. Using
C. elegans, Aroian and co-workers found that p38 activation
was important for survival at the organism level [49] and
that one of the downstream consequences of p38 activation
was the activation of the ER unfolded protein response
(UPR) [52��]. The relevance of the UPR pathway to
mammalian systems and how the UPR promotes survival
at the cellular or organism levels remain to be established.
The decrease of intracellular potassium triggered by
PFTs was found to be a potent activator of the inflam-
masome, the multiprotein danger-sensing complex that is
involved in caspase-1 activation [53��]. In non-myeloid
cells, PFT-induced inflammasome assembly and caspase-
1 activation was found to, in turn, activate the master
regulators of lipid metabolism: the sterol responsive
element binding proteins (SREBPs) [53��]. SREBP acti-
vation was found to promote cell survival through yet to
be established mechanisms.
Finally, various CDCs were found to have effects in the
nucleus, namely the dephosphorylation of histone H3 and
the deacetylation of histone H4 [54�], suggesting that
membrane perforation could lead to epigenetic repro-
gramming of affected cells. Again, the underlying path-
ways have not yet been established nor has the crosstalk
that may exist between the different pathways activated
by PFPs been addressed.
Recovery of plasma membrane integrityDespite the drastic consequences of membrane perfor-
ation, cells can, depending on the extent and duration
of the membrane damage, recover the integrity of their
plasma membrane.
Intuitively several, not mutually exclusive, mechanisms
can be suggested: the lesion/pore could be clogged, the
Current Opinion in Cell Biology 2009, 21:589–595
injury site could be removed from the surface either by
endocytosis or shedding of vesicles, or the injury could
induce adaptation through gene expression that would
help injured cells either to reseal their wounded plasma
membrane or the tissue to recover as a whole. We will first
review the limited information available on membrane
repair following pore formation and finish with the mem-
brane sealing following mechanical damage for which
interesting recent findings have been made.
Counter intuitively, cells can rapidly (<1 h) restore plasma
membrane integrity following the formation of large pores
(30–50 nm in diameter) formed by CDCs or perforin
[55,56] but take a long time (>6 h) or fail to recover upon
formation of small pores (�2 nm in diameter) by toxins
such as Staphylococcal a-toxin [50,57] or aerolysin (our
unpublished observations). Recovery from large pores
requires influx of extracellular calcium but is p38-inde-
pendent, while recovery from smaller pores does not rely
on calcium but involves p38 (reviewed in [10]). How
calcium and p38, respectively, favor membrane repair in
these two situations is not known, nor is there a clear
explanation for the difference in mechanisms, and thus
of timescales, and why rapid repair seems to fail for small
pores. Removal of pores from the cell surface by endocy-
tosis, while not providing a full explanation for the differ-
ences, could however be important for cell recovery in both
situations (Figure 3). Using time-lapse video microscopy,
SLO was found to undergo rapid (<1 min) calcium-de-
pendent endocytosis [58], suggesting that pores are
removed from the cell surface, although this has not been
directly shown. Clearance of pores from the cell surface was
also observed for Staphylococcal a-toxin [57]. Both the
monomeric and heptameric forms of the toxin disappeared
from the surface of the human keratinocyte cell line HaCat
over a period of 2 h via a dynamin-dependent pathway [57].
Inhibition of dynamin with the drug dynasore led to an
increase in cell death [57]. Triggered endocytosis of the
perforin pore was also proposed to be important for the
delivery of granzymes upon CTL induced cell death of
infected cells [55]. It was thought that granzymes, which
trigger apoptosis once in the cytoplasm, passed the plasma
membrane through the perforin channels. Recent data,
however, indicate that cells actually repair perforin-
induced pores through a mechanism that involves per-
forin-triggered endocytosis, which would simultaneously
bring perforin and granzymes into the cells [55].
Once inside the cells, the oligomeric pores formed by
PFPs should in principle be destroyed, since they would
render endosomes leaky and affect their function. Gutier-
rez et al. [59�] proposed that intracellular destruction, or
sequestration, could occur through autophagy – the cata-
bolic process that degrades components of the cell
through the lysosomal machinery [60] – on the basis of
the observation that cells deficient in autophagy were
more sensitive to Vibrio cholera cytolyin induced cell death
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Membrane injury by pore-forming proteins Bischofberger, Gonzalez and van der Goot 593
Figure 3
Membrane repair after mechanical rupture or pore formation. Small
lesions such as those occurring during electroporation (<1 mm)
spontaneously seal. Bigger ruptures, induced by physical stress, trigger,
within seconds, the tethering and fusion of intracellular organelles at the
site of injury (see text). The attack by big, CDC type, PFPs also seems to
activate this machinery, but it is then followed by endocytosis of the
pores, leading to their physical removal from the plasma membrane. For
small PFTs a similar phenomenon has been observed, but following
slower kinetics. Subsequent degradation of PFTs by autophagy has
been proposed.
(Figure 3). Considering the high stability of the pore-
forming complex, Husmann et al., by contrast, proposed
that cells get rid of the Staphylococcal a-toxin pores
through regurgitation via an exosomal pathway [57].
Intracellular sequestration of PFPs has also been proposed
for both amyloid proteins and LLO as a means to avoid
further damage. Following the hypothesis that amyloid
proteins can form pore-like intermediates, it has been
proposed that the fibrillar deposits actually constitute a
defense mechanism to sequester the deadly intermediate
structures [61]. Along these lines, LLO inside Listeria
infected cells was found to form higher order aggregates
that were polyubiquitinated and contained the protein p62,
both typical components of aggregates found in neurode-
generative diseases [62]. Formation of these deposits was
proposed to protect the infected cells from massive pore
formation.
While the mechanisms leading to recovery of membrane
integrity following pore formation remain somewhat
obscure, a quite clear picture is emerging regarding seal-
ing after mechanical injury leading to lesion of >1 mm in
diameter. Resealing occurs on the second time scale,
requires entry of extracellular calcium as well as tethering
www.sciencedirect.com
and recruitment of intracellular membranes at the injury
site (reviewed in [9,63]) (Figure 3). The source of orga-
nelles depends on the size of the lesion and whether it is
the first or the second wound. Exocytosis after the first
wound may involve a variety of organelles such as lyso-
somes, endosomes, and enlargeosomes, among others,
while exocytosis after the second wound seems to involve
the Golgi apparatus [63]. Since not all events that lead to
an increase in intracellular calcium trigger fusion of
intracellular vesicles with the plasma membrane, it was
postulated that additional molecular sensors of plasma
membrane integrity must exist. It was recently shown
that exposure to the extracellular oxidizing milieu con-
tributes to the resealing process in muscle cells [64��].Oxidation was found to trigger tethering of vesicles at the
injury site through the action of the MG53 protein [64��].MG53 has the dual capacity to bind to phosphatidyl
serine on the inner leaflet of the plasma membrane
and on vesicles, and to oligomerize under oxidizing
conditions through disulfide bond formation [64��]. Sub-
sequent calcium dependent vesicle fusion completes
the repair by restoring plasma membrane continuity
(Figure 3). The fact that changes in the oxidative state
of the cytoplasm constitute a signal – in addition to
potassium decrease and calcium increase – is very attrac-
tive, and it will be interesting to determine if similar
mechanisms operate when cells are challenged by PFTs.
Two alternative mechanisms for membrane sealing after
mechanical injury have however been proposed
[58,65,66]. Calcium-triggered activation of transglutami-
nase, an enzyme catalyzing protein cross-linking reac-
tions, was found to promote membrane resealing after
mechanical damage [65] possibly by forming a kind of clot
at the injury site that would prevent entry of the extra-
cellular milieu [65,66]. Alternatively, as for repair after
SLO pore formation, mechanical lesions were found to
undergo calcium-dependent endocytosis [58].
Conclusion and outlookMammalian cells are susceptible to breaches in their
plasma membrane. The lesions they encounter can be
of different sizes – ranging from a few nm to a few mm in
diameter – and can be lined by proteins and/or by lipids.
Recent findings suggest that these different lesions can all
be repaired by cells but involve different mechanisms and
operate on different time scales. Future research should
elucidate whether different lesions are sensed differently,
whether different pathways are activated, or whether all
pathways are activated under all conditions, but depend-
ing on the lesion type and size, only a given pathway will
succeed in restoring plasma membrane continuity.
AcknowledgementsWe thank Vern Carruthers for sharing the coordinates of the model of theToxoplasma perforin like protein. This work was supported by the SwissNational Science Foundation and by the Swiss SystemsX.ch initiative
Current Opinion in Cell Biology 2009, 21:589–595
594 Membranes and organelles
evaluated by the Swiss National Science Foundation. MB is a recipient ofan iPhD SystemsX.ch fellowship. GvdG is an international Fellow of theHoward Hughes Medical Institute
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Current Opinion in Cell Biology 2009, 21:589–595