Part I - Mysterious Illnessyourspace.minotstateu.edu/paul.lepp/Concepts/powerpoints/Unit 3.pdfPart I - Mysterious Illness • Well, Becky thought, being a dorm counselor for freshmen

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Part I - Mysterious Illness• Well, Becky thought, being a dorm counselor for

freshmen was not going to be that bad. She got a free room for the year and the food was plentiful - free steaks last week at an outdoor BBQ followed by a hay ride in a horse-drawn wagon in their welcome celebration.

• But, then again, it wasn’t perfect: she had ended up covered in bug bites; some of the students got sick from eating steak that was burned on the outside and raw in the middle; the horses had mucked up the courtyard; and pigeons had roosted on the dorm roof.

• At least tonight the students were finally settling in and quieting down, she mused.

Monday, February 20, 2012

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Part I, continued…• The quiet was shattered a few minutes later when one

of the other counselors, Ann, yelled through her door:

• “Becky, we’ve got a problem. One of the students found a homeless kitten, and the girl has been keeping her in her room. I only found out because the girl, Ellie, just came to my room complaining of being sick. I felt sick too when I saw the mess that kitten made. I thought cats were born housebroken, but I guess not.”

• “Anyway, now I think Ellie might really be sick,” Ann continued. “She’s feverish and says she’s going to throw up.”


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Part I, continued

• “What do you want me to do?” Becky asked.

• “I’m freaking out!” Ann answered. “Forget about the mess, just help me figure out what to tell them at the health center. I don’t know what she’s been exposed to. Or what we’ve been exposed to for that matter! This is the second girl this week with aches, fever, and nausea.”

• “My Mom sent me a bunch of medicine,” Becky answered. “I’ll make a list of where we’ve been, what we’ve eaten, and what we’ve possibly been exposed to. Then we can start taking something right away to keep from getting it, too.”


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Becky’s Task• The Health Center will be using the

differences between organisms to diagnose and treat Ellie.

• In the next 2 minutes, list the clues in the story that help you identify how Ellie could have contracted a disease with flu-like symptoms.


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Your Task• Becky did an Internet search and found 5 possible

suspects that could be causing Ellie’s illness.

• During this class session we will investigate the differences between them.

• Organisms are usually distinguished by the characteristics you listed in your homework answers to Table 1. Add any details you missed so that when you hear the results of the Health Center tests you will be able to figure out what was making Ellie sick.

• Fill in possible drug treatments in Table 2.


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• Initial Identification: The Health Center collected blood samples from Ellie and observed her cells under a microscope. They identified foreign structures with DNA and outer membranes. The cells were gram negative and about 1/10 the size of her cells.

• “Ah, ha!” said Becky. “That matches one of my suspects. I knew those were a health hazard. I just need to re-check the size thing. This internet chart compares our cells to viruses and stuff.”

Ellie’s Diagnosis


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Metric Review• 1 meter (m) = ~3 feet• 1 meter (m) = 1000

millimeter (mm) • 1 millimeter (mm) = 1000

micrometer (µm) (smallest size distinguished by naked eye)

• 1 micrometer (µm) = 1000 nanometer (nm) (only seen with light microscope)

• 1 mm poppy seed = (1000 µm/mm) = 1000 µm

met

ers

1 mm

1 µm

1 nm

10-3

10-4

10-5

10-6

10-7

10-8

10-9

Cells likeours

Bacteria

Viruses

Proteins

Atoms


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Becky’s Internet Search Results – List of Suspects

Suspect 1: Coxiella burnetii causes Q-fever. Coxiella are often found in livestock and are excreted in milk, urine, and feces. Infection occurs 2-3 weeks after inhalation of barnyard dust. They are 0.3-0.5 µm gram-negative bacterium (prokaryotes) that must invade and reside inside human cells to cause infection.

1µm


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Prokaryotes

• Unicellular • Reproduce asexually• Composition

– Protected interior (cytoplasm) that contains genetic material (one circle of DNA) as well as complexes of protein enzymes to carry out necessary functions of gathering energy, manufacturing proteins (ribosomes), etc.


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Prokaryotes

• Size– 0.2-10 micrometer (µm)

• Composition– Phospholipid membrane, many contain

cell wall composed of peptidoglycan (positive for chemical Gram stain), those with little or no peptidoglycan called Gram negative (like Coxiella).


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Penicillins blocks the enzyme that normally creates bacterial cell walls.

Streptomycin blocks bacterial ribosomes.

Ciprofloxacin blocks a bacterial DNA replication enzyme

CQ1: “That’s great,” Becky said. “My Mom sent me 3 different antibiotics to kill bacteria.”

Given the description of Ellie’s test results, which antibiotic will definitely NOT work:

Text


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A: Yes

B: Nom

eter

s

1 mm

1 µm

1 nm

10-3

10-4

10-5

10-6

10-7

10-8

10-9

Cells likeours

Bacteria

Viruses

Proteins

Atoms

CQ2: “Wait a minute!” Ann said. “The doctor said the blobs in Ellie’s blood were 1/10th the size of her cells. Could they be Coxiella?”


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Part II: Microscope AnalysisBecky and Ann talked together outside the student’s room at the student health center the next morning.

“You’re right!” Becky exclaimed after viewing photographs of Ellie’s blood up close. “I wish I hadn’t started taking the antibiotics. The little crescent shaped structures that I thought were the bacteria may not be. They aren’t too big to be bacteria, but they aren’t too small to be mitochondria or some kind of protozoan parasite.”

“Wait a minute,” Ann replied. “The things on the right are the pathogens? Look at their insides, they can’t be bacteria.”

“Why not?” Becky asked.


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Part II, Continued

1µm

“Wait a minute,” Ann replied. “The things on the right are the pathogens? Look at their insides, they can’t be bacteria.”

“Why not?” Becky asked.


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A: CytoplasmB: DNAC: Outer phospholipid membraneD: RibosomesE: Membrane-bound organelles

CQ3: “Well,” Becky admitted, “there should be differences between Ellie’s cells and the little blobs they saw. Otherwise, it might mean one of my other suspects is the cause. These are some of the structures normally found in all cells.”

“No,” Ann answered, “one isn’t.”

Which structure is NOT found in all cells?


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Eukaryotes Prokaryotes

DNA linear strands within membrane-bound nucleus

single circle in “nucleoid region

Size 5-100 µm 0.2-10 µm

Organization often multicellular, some have cell walls (no peptidoglycan)

usually single-celled, some have

peptidoglycan cell walls

Metabolism usually need oxygen to exist may not need oxygen to exist

Organelles Nucleus and possibly other membrane bound organelles

like mitochondria

no nucleus

Examples plants, animals, protists, fungi bacteria, archaea


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Eukaryote - Suspect 2: Cryptococcus neoformans2.5-10 µm encapsulated fungus found in decaying pigeon or chicken droppings. Inhaled as spores that eventually spread to the brain causing meningoencephalitis. Has a black pigmented layer that can be seen sometimes on bird seed.


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Eukaryote - Suspect 3: Toxoplasma gondii

• 4-6 µm single-celled protozoan parasite of mammals & birds.• Most likely acquired through ingesting cysts in undercooked meat.


Toxoplasma gondii cyst


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Suspect 3:Toxoplasma gondii• Usually no symptoms, but can cause flu-like complaints.• Sexual life cycle occurs in cats, so infection can follow contact with cat feces.


Toxoplasma movie

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Toxoplasma movie

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Eukaryotes• Uni- or multicellular.• Reproduce asexually & sexually.• Composition:

– Genetic material (long linear strands of DNA chromosomes) enclosed in a double membrane (nucleus)

– Some have cell walls (plants have cellulose, fungi ß-glucan)


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Eukaryotes

• Size 10-100 (µm)• Composition:

– CM and internal membranes are a phospholipid bilayer outside.

– Internal membranes separate functions such as gathering and transforming cellular energy and manufacturing macromolecules.


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Eukaryotic Organelles


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A: Presence of DNA. B: Presence of ß-glucan-containing cell walls.

C: Presence of cellulose.D: Presence of peptidoglycan cell walls.

Becky’s Anti-Eukaryotic Medicines:

• Pyrimethamine, Sulfonamides: Interfere with enzymes used to make the folic acid needed to make thymine and uracil nucleotides.

• Polyenes combine with a component of fungal and some bacterial membranes, disrupt and break them.

One of these drugs specifically affects one of the two eukaryotic suspects. Which test of Ellie’s blood would help you tell which eukaryotic suspect she was infected with?


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One of these drugs specifically affects one of the two eukaryotic suspects. Which test of Ellie’s blood would help you tell which eukaryotic suspect she was infected with?


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Part III: Viruses• Becky and Ann are back at the dorm waiting for the

results of more tests.

• “I’ve also got some tamiflu,” Becky volunteered. “I mean, what if those cells in the picture aren’t really making her sick. Maybe she just has the plain old flu.”

• “What do you mean?” Ann asked. What’s the difference?”

• “Flu is a virus,” Becky answers. “I’ve actually got two suspects that are viruses. They’re probably the most different from the prokaryotes and eukaryotes. They’re not even cells.”


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4. Influenza Virus: Spread primarily through respiratory droplets from sneezing or coughing. Virus has single strand of RNA surrounded by phospholipids/protein envelope (80-120nm).

5. West Nile Virus: Spread by mosquitoes that have previously fed on infected birds. 20% of infected people show symptoms. Single stranded RNA, phospholipid/protein envelope (50nm).

Electron micrographs


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Viruses

• Not cells• Cannot reproduce alone

– hijacks a host cell to replicate itself.• Composition

– Outer shell: repetitive protein often inserted into a lipid envelope (responsible for recognition and infection of host cell.)


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Viruses

• Size– 100 times smaller than bacteria

• Composition– Protected interior that contains genetic

material (DNA or RNA) with important protein enzymes required for duplication.


virus replication

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Tamiflu: Blocks neuraminidase enzyme made by all influenza A strains (cause the “flu” and avian flu.) Viruses are unable to remove sticky sialic acid, and can’t escape.


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Table 1 Take a few minutes to complete the

homework table comparing viruses, bacteria, and eukaryotes.


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CQ5: Match the description with the suspect. Use your responses to Table 1 to identify the row below that best describes West Nile Virus.

Circular DNA

Nucleus Divides asexually

Size Cell Wall

Sexual Reproduction

A + - + 1µm + -B - + + 10µ

m- +

C - - - 0.1µm

- -D - + + 5µm + +


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Part IV: DNA Analysis “Well, it isn’t viral,” Becky said, closing her cell

phone. “No neuraminidase. But, they found some foreign DNA with the sequence: AACGTGGTCGTT. The closest match is a gene used to make ribosomes (rDNA). They are searching a huge DNA database of sequences to find the organism that has the closest match.”


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A: Ellie’s nucleus ATGGTCTCAATG

B: Ellie’s mitochondria TTGGTCCGTCAG

C: Coxiella bacteria TTGGTCGGTCAG

D: Toxoplasma nucleus AACGTGGTAGTT

E: Cryptococcus nucleus ATGGTGGCAATG

CQ6: Foreign DNA sequence isolated from Ellie: ACGTGGTCGTT. Which sequence is the best match with this foreign DNA?


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Strange Similarities

“What’s weird is that Ellie’s mitochondrial DNA matches the Coxiella sequence so closely.”

Ellie’s mitochondria TTGGTCCGTCAG Coxiella bacteria TTGGTCGGTCAG

“That makes sense in a way,” Ann answered. “There is a lot of evidence that points to mitochondria being descendents of gram-negative bacteria just like Coxiella.”

“What type of evidence?” Becky asked.


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Eukaryotic Organelles & Endosymbiosis

Nprokaryote NC

Strange similarities:1. Chloroplasts and mitochondria are the same

size as prokaryotes.2. Both have circular DNA without histones with

similar sequence to photosynthetic bacteria (cyanobacteria) and obligate intracellular rickettsia bacteria.

3. Both divide like prokaryotes.


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Eukaryotic Organelles & Endosymbiosis

Nprokaryote NC

Strange similarities:4. Have their own protein synthesis machinery

(ribosomes) more like bacteria than eukaryotes (sensitivity to Streptomycin).

5. Inner membrane of mitochondria contains unusual phospholipid characteristic of bacterial membranes.


38First prokaryotes 3.75 billion years ago

Single-celled eukaryotes2 billion years ago

Similarities Used to Group Organisms


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CQ7: Which letter best defines the place mitochondria would take next to their closest relatives on this family tree of living

ABCDE


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Finale: Ellie’s Prognosis “Well, Ellie’s responding well to the pyrimethamines that the

doctors prescribed,” Becky commented to Ann while checking her email a few days later at the dorm.

“Yeah, and we’re lucky the cipro we took couldn’t harm our cells,” Ann replied. “We were so wrong! I’m never self-medicating again. Do you think we should warn the other students. They might have had contact with the kitten, too.”

“We don’t know if it was from cat poop,” Becky answered. “I learned that something like 25-40% of American adults are already infected with Toxoplasma gondii, and not because of their cats—usually it’s from eating raw meat. Plus, apparently the oocysts in fresh cat poop aren’t infectious for a couple of days. So, if you scoop the box right away you don’t have to worry.”

“So now I have to know how often the cat box is cleaned?! I don’t think I’m cut out for this job!” Ann moaned.


“Take Two and Call Me in the Morning”

A Case Study in Cell Structure and Function

by

Peggy BrickmanUniversity of Georgia




Endosymbiotic Theory

• Mitochondria and Chloroplasts were once free-living bacteria.

• Proposed by Russian botanist Konstantin Mereschkowski in 1905

• Popularized by Lynn Margulis in 1967


Chloroplast






Eukaryotic Cilia & Flagella


Figure 04.07b


Cytoskeleton



Enzyme

Mechanism of enzyme activity

National Human Genome Research InstituteNational Institutes of Health Division of Intramural Research

Substrate Products

Enzyme Enzyme-substrate

complex






1) What could have been in the flea dip that killed the girl? 2) How could a product that is normally harmless to humans and pets have killed the girl?


What could have been in the flea dip that killed the girl?


How could a product that is normally harmless to humans and pets have killed the girl?


1) What could have been in the flea dip that killed the girl? 2) How could a product that is normally harmless to humans and pets have killed the girl?



glycolysisGlucose6C

Organiccompound

3C TCA

3CO2

You exhale

NAD+

NADH + H+

ETS

O2

you inhale

H2O

cell cytoplasm mitochondria

Eukaryotes

cell cytoplasm

Prokaryotes

Cellular Respiration


Documents

Part I - Mysterious Illnessyourspace.minotstateu.edu/paul.lepp/Concepts/powerpoints/Unit 3.pdfPart I - Mysterious Illness • Well, Becky thought, being a dorm counselor for freshmen