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February 2018 Papers published by APHA staff in 2017 February 2018

Papers published by APHA staff in 2017 - gov.uk · The effect of oral vaccination with Mycobacterium bovis BCG on the development of tuberculosis in captive European badgers (Meles

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Page 1: Papers published by APHA staff in 2017 - gov.uk · The effect of oral vaccination with Mycobacterium bovis BCG on the development of tuberculosis in captive European badgers (Meles

February 2018

Papers published by APHA

staff in 2017 February 2018

Page 2: Papers published by APHA staff in 2017 - gov.uk · The effect of oral vaccination with Mycobacterium bovis BCG on the development of tuberculosis in captive European badgers (Meles

February 2018

© Crown copyright 2018

You may re-use this information (excluding logos) free of charge in any format or medium,

under the terms of the Open Government Licence v.3. To view this licence visit

www.nationalarchives.gov.uk/doc/open-government-licence/version/3/ or email

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Page 3: Papers published by APHA staff in 2017 - gov.uk · The effect of oral vaccination with Mycobacterium bovis BCG on the development of tuberculosis in captive European badgers (Meles

February 2018

Abubakar M; Mahapatra M; Muniraju M; Arshed MJ; Khan EH; BANYARD AC; Ali Q; Parida S 2017 Serological detection of antibodies to peste des petits ruminants virus in large ruminants. Transboundary and Emerging Diseases 64 (2) 513-519. ABUOUN M; STUBBERFIELD EJ; DUGGETT NA; KIRCHNER M; DORMER L; NUNEZ-GARCIA J; RANDALL LP; LEMMA F; Crook DW; TEALE C; SMITH RP; ANJUM MF 2017 mcr-1 and mcr-2 variant genes identified in Moraxella species isolated from pigs in Great Britain from 2014 to 2015. Journal of Antimicrobial Chemotherapy 72 (10) 2745-2749. Abutarbush SM; LA ROCCA A; Wernike K; Beer M; Al Zuraikat K; Al Sheyab OM; Talafha AQ; STEINBACH F 2017 Circulation of a Simbu serogroup virus, causing Schmallenberg virus-like clinical signs in northern Jordan. Transboundary and Emerging Diseases 64 (4) 1095-1099. AEGERTER J; FOURACRE D; SMITH GC 2017 A first estimate of the structure and density of the populations of pet cats and dogs across Great Britain. PLoS ONE 12(4): e0174709. Al Dahouk S; Kohler S; Occhialini A; Jimenez de Bagues MP; Hammerl JA; Eisenberg T; Vergnaud G; Cloeckaert A; Zygmunt MS; WHATMORE AM; Melzer F; Drees KP; Foster JT; Wattam AR; Scholz HC 2017 Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts. Scientific Reports 7, Article number: 44420. Al-Griw HH; Kraim ES; Farhat ME; PERRETT LL; WHATMORE AM 2017 Evidence of ongoing brucellosis in livestock animals in North West Libya. Journal of Epidemiology and Global Health 7 (4) 285-288. Almansa, R; Martinez-Orellana P; Rico L; Iglesias V; Ortega A; VIDANA B; Martinez J; Exposito A; Montoya M; Bermejo-Martin JF 2017 Pulmonary transcriptomic responses indicate a dual role of inflammation in pneumonia development and viral clearance during 2009 pandemic influenza infection. PeerJ 5:e3915. Amarilla SP; Gomez-Laguna J; Carrasco L; Rodriguez-Gomez IM; Caridad y Ocerin JM; GRAHAM SP; FROSSARD J-P; STEINBACH F; Salguero FJ 2017 Porcine reproductive and respiratory syndrome type 1 viruses induce hypoplasia of erythroid cells and myeloid cell hyperplasia in the bone marrow of experimentally infected piglets independently of the viral load and virulence. Veterinary Microbiology 201, 126-135.

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February 2018

ANJUM MF 2015 Screening methods for the detection of antimicrobial resistance genes present in bacterial isolates and the microbiota. Future Microbiology 10 (3) 317-320. ANJUM MF; Zankari EA; Hasman H 2017 Molecular methods for detection of antimicrobial resistance. Microbiology Spectrum 5 (6) ARBA-0011-2017. APHA 2017 Deaths: C.A. Featherstone. Veterinary Record 180 (13) 332-333. APHA 2017 Disease surveillance in England and Wales, April 2017. Veterinary Record 180 (18) 440-443. APHA 2017 Disease surveillance in England and Wales, August 2017. Veterinary Record 181 (10) 257-260. APHA 2017 Disease surveillance in England and Wales, December 2016. Veterinary Record 180 (2) 39-42. APHA 2018 Disease surveillance in England and Wales, December 2017. Veterinary Record 182 (1) 11-15. APHA 2017 Disease surveillance in England and Wales, February 2017. Veterinary Record 180 (10) 243-246. APHA 2017 Disease surveillance in England and Wales, January 2017. Veterinary Record 180 (6) 141-144. APHA 2017 Disease surveillance in England and Wales, July 2017. Veterinary Record 181 (6) 135-138. APHA 2017 Disease surveillance in England and Wales, June 2017. Veterinary Record 181 (1) 11-15. APHA 2017 Disease surveillance in England and Wales, March 2017. Veterinary Record 180 (14) 348-351.

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February 2018

APHA 2017 Disease surveillance in England and Wales, May 2017. Veterinary Record 180 (22) 534-537. APHA 2017 Disease surveillance in England and Wales, November 2017. Veterinary Record 181 (22) 585-589. APHA 2017 Disease surveillance in England and Wales, October 2017. Veterinary Record 181 (18) 471-474. APHA 2017 Disease surveillance in England and Wales, September 2017. Veterinary Record 181 (14) 362-265. Arent Z; Gilmore C; BARLOW AM; SMITH L; Ellis WA 2017 Leptospira interrogans serogroup Pomona infections in the UK: is there a real threat for farm animals? Veterinary Record 180 (17) 424. ARNOLD ME; SIMONS RRL; HOPE J; Gibbens N; ADKIN AL 2017 Is there a decline in bovine spongiform encephalopathy cases born after reinforced feed bans? A modelling study in EU member states. Epidemiology and Infection 145 (11) 2280-2286. Arsevska E; Singleton D; Sanchez-Vizcaino F; Williams N; Jones PH; Smythe S; Heayns B; Wardeh M; Radford AD; Dawson S; Noble PJM; DAVIES RH 2017 Small animal disease surveillance: GI disease and salmonellosis. Veterinary Record 181 (9) 228-232. Ayoola MC; Akinseye VO; Cadmus E; Awosanya E; Popoola OA; Akinyemi OO; PERRETT L; TAYLOR A; STACK J; Moriyon I; Cadmus SI 2017 Prevalence of bovine brucellosis in slaughtered cattle and barriers to better protection of abattoir workers in Ibadan, South-Western Nigeria. Pan African Medical Journal 28:68. Bahir W; Omar O; ROSALES RS; HLUSEK M; Ziay G; Schauwers W; WHATMORE AM; Nicholas RAJ 2017 Search for OIE-listed ruminant mycoplasma diseases in Afghanistan. BMC Veterinary Research 13:149. Baines D; GILES M; Richardson M 2017 Microscopic and molecular tracing of Cryptosporidium oocysts: identifying a possible reservoir of infection in red grouse. Pathogens 6 (4) 57. Banos G; Winters M; Mrode R; MITCHELL AP; Bishop SC; Woolliams JA; Coffey MP 2017 Genetic evaluation for bovine tuberculosis resistance in dairy cattle. Journal of Dairy Science 100 (2) 1272-1281.

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February 2018

BANYARD AC; FOOKS AR 2017 The impact of novel lyssavirus discovery. Microbiology Australia 38 (1) 17-21. Baruzzi C; COATS J; CALLABY R; COWAN DP; MASSEI G 2017 Rhodamine B as a long-term semi-quantitative bait marker for wild boar. Wildlife Society Bulletin 41 (2) 271-277. Bates N; PAYNE J 2017 Common farm poisons: part 1. Livestock 22 (5) 258-263. Bates N; PAYNE J 2017 Common farm poisons: part 2. Livestock 22 (6) 314-321. Bates N; PAYNE J 2017 Lead poisoning in cattle. Livestock 22 (4) 192-197. Bates N; PAYNE J 2017 Risk assessment and risk management of poisoning in farm animals. Livestock 22 (3) 146-149. Bean TG; Arnold KE; LANE JM; Bergstrom E; Thomas-Oates J; Rattner BA; Boxall ABA 2017 Predictive framework for estimating exposure of birds to pharmaceuticals. Environmental Toxicology and Chemistry 36 (9) 2335-2344. BECK S; Gunawardena P; HORTON DL; HICKS DJ; MARSTON DA; ORTIZ-PELAEZ A; FOOKS AR; NUNEZ A 2017 Pathobiological investigation of naturally infected canine rabies cases from Sri Lanka. BMC Veterinary Research 13:99. Bisdorff B; Schauer B; Taylor N; Rodriguez-Prieto V; Comin A; BROUWER A; Dorea F; Drewe J; Hoinville L; Lindberg A; Martinez Aviles M; Martinez-Lopez B; Peyre M; Pinto Ferreira J; Rushton J; Van Schaik G; Stark KDC; Staubach C; Vicente-Rubiano M; Witteveen G; Pfeiffer D; Hasler B 2017 Active animal health surveillance in European Union Member States: gaps and opportunities. Epidemiology and Infection 145 (4) 802-817. BOOY O; CORNWELL L; PARROTT D; SUTTON-CROFT M; Williams F 2017 Impact of biological invasions on infrastructure. In: Vila M; Hulme P (eds), Impact of Biological Invasions on Ecosystem Services: Invading Nature, volume 12, Switzerland, Springer, 235-247.

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February 2018

BOOY O; Mill AC; Roy HE; Hiley A; MOORE N; ROBERTSON P; BAKER S; Brazier M; Bue M; Bullock R; Campbell S; Eyre D; Foster J; Hatton-Ellis M; Long J; Macadam C; Morrison-Bell C; Mumford J; Newman J; PARROTT D; Payne R; Renals T; Rodgers E; Spencer M; Stebbing P; SUTTON-CROFT M; Walker KJ; WARD A; Whittaker S; Wyn G 2017 Risk management to prioritise the eradication of new and emerging invasive non-native species. Biological Invasions 19 (8) 2401-2417. Bosse JT; Li Y; ROGERS J; Fernandez Crespo R; Li Y; Chaudhuri RR; Holden MTG; Maskell DJ; Tucker AW; Wren BW; Rycroft AN; Langford PR 2017 Whole genome sequencing for surveillance of antimicrobial resistance in Actinobacillus pleuropneumoniae. Frontiers in Microbiology 8:311. Bourne J; BARLOW A 2017 J.N. Todd Veterinary Record 180 (12) 308. BROWN I; Abolnik C; Garcia-Garcia J; McCullough S; Swayne DE; Cattoli G 2017 High-pathogenicity avian influenza outbreaks since 2008, excluding multi-continental panzootic of H5 goose/Guangdong-lineage viruses. In: Swayne D (ed), Animal Influenza, 2nd ed, John Wiley and Sons, Ames, Iowa, 2017, 248-270. Brugman VA; England ME; Stoner J; Tugwell L; Harrup LE; Wilson AJ; Medlock JM; Logan JG; FOOKS AR; Mertens PPC; JOHNSON N; Carpenter S 2017 How often do mosquitoes bite humans in southern England? A standardised summer trial at four sites reveals spatial, temporal and site-related variation in biting rates. Parasites and Vectors 10:420. Brugman VA; HERNANDEZ-TRIANA LM; England ME; Medlock JM; Mertens PPC; Logan JG; Wilson AJ; FOOKS AR; JOHNSON N; Carpenter S 2017 Blood-feeding patterns of native mosquitoes and insights into their potential role as pathogen vectors in the Thames estuary region of the United Kingdom. Parasites and Vectors 10:163. BRUNTON LA; Alexander N; Wint W; ASHTON A; BROUGHAN JM 2017 Using geographically weighted regression to explore the spatially heterogeneous spread of bovine tuberculosis in England and Wales. Stochastic Environmental Research and Risk Assessment 31 (2) 339-352. BRUNTON LA; Donnelly CA; O'CONNOR H; PROSSER A; ASHFIELD S; ASHTON A; UPTON P; MITCHELL A; GOODCHILD AV; PARRY JE; DOWNS SH 2017 Assessing the effects of the first 2 years of industry-led badger culling in England on the incidence of bovine tuberculosis in cattle in 2013–2015. Ecology and Evolution 7 (18) 7213-7230.

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February 2018

Budge GE; Hodgetts J; Jones EP; Ostoja-Starzewski JC; Hall J; Tomkies V; SEMMENCE N; BROWN M; Wakefield M; Stainton K 2017 The invasion, provenance and diversity of Vespa velutina Lepeletier (Hymenoptera: Vespidae) in Great Britain. PLoS ONE 12 (9): e0185172. BUDGEY R; LEARMOUNT J; SMITH GC 2017 Simulating control of a focal wildlife outbreak of Echinococcus multilocularis. Veterinary Parasitology 237, 47-56. Bundle DR; MCGIVEN J 2017 Brucellosis: improved diagnostics and vaccine insights from synthetic glycans. Accounts of Chemical Research 50 (12) 2958–2967. BUSCH F; Bannerman F; Liggett S; Griffin F; Clarke J; Lyashchenko KP; RHODES S 2017 Control of bovine tuberculosis in a farmed red deer herd in England. Veterinary Record 180 (3) 68. Buzdugan SN; CHAMBERS MA; DELAHAY RJ; Drewe JA 2017 Quantitative interferon-gamma responses predict future disease progression in badgers naturally infected with Mycobacterium bovis. Epidemiology and Infection 145 (15) 3204-3213. Buzdugan SN; Vergne T; Grosbois V; DELAHAY RJ; Drewe JA 2017 Inference of the infection status of individuals using longitudinal testing data from cryptic populations: Towards a probabilistic approach to diagnosis. Scientific Reports 7, Article number: 1111. CARD RM; CAWTHRAW SA; NUNEZ-GARCIA J; ELLIS RJ; Kay G; Pallen MJ; Woodward MJ; ANJUM MF 2017 An in vitro chicken gut model demonstrates transfer of a multidrug resistance plasmid from salmonella to commensal Escherichia coli. mBio 8 (4) e00777-17. CARSON A; APHA Small Ruminant Expert Group 2017 Focus on ovine abortions. Veterinary Record 180 (10) 246-247. CARTER A; Adams M; La Ragione RM; Woodward MJ 2017 Colonisation of poultry by Salmonella enteritidis S1400 is reduced by combined administration of Lactobacillus salivarius 59 and Enterococcus faecium PXN-33. Veterinary Microbiology 199, 100-107. CHAMBERS MA; Aldwell F; WILLIAMS GA; PALMER S; GOWTAGE S; ASHFORD R; DALLEY DJ; DAVE D; WEYER U; SALGUERO FJ; NUNEZ A; NADIAN AK; CRAWSHAW T; Corner LAL; LESELLIER S 2017 The effect of oral vaccination with Mycobacterium bovis BCG on the development of tuberculosis in captive European badgers (Meles meles). Frontiers in Cellular and Infection Microbiology 7, Article 6.

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February 2018

CHAUVENET ALM; Gill RMA; SMITH GC; WARD AI; MASSEI G 2017 Quantifying the bias in density estimated from distance sampling and camera trapping of unmarked individuals. Ecological Modelling 350, 79-86. COLDHAM N; ANJUM M; SMITH R; FLOYD T; IRVINE R; Seals M; VAN DER BURGT G; SHARMA M 2017 Pilot project: Sampling fallen stock calves for respiratory pathogens by molecular methods and histopathology . Cattle Practice 25 (3) 268. CROFT S; CHAUVENET ALM; SMITH GC 2017 A systematic approach to estimate the distribution and total abundance of British mammals. PLoS ONE 12 (6) e0176339. Davison NJ; PERRETT LL; DAWSON C; Dagleish MP; Haskins G; MUCHOWSKI J; WHATMORE AM 2017 Brucella ceti infection in a common minke whale (Balaenoptera acutorostrata) with associated pathology. Journal of Wildlife Diseases 53 (3) 572-576. de la Fuente J; Antunes S; Bonnet S; Cabezas-Cruz A; Domingos AG; Estrada-Pena A; JOHNSON N; Kocan KM; MANSFIELD KL; Nijhof AM; Papa A; Rudenko N; Villar M; Alberdi P; Torino A; Ayllon N; Vancova M; Golovchenko M; Grubhoffer L; Caracappa S; FOOKS AR; Gortazar C; Rego ROM 2017 Tick-pathogen interactions and vector competence: identification of molecular drivers for tick-borne diseases. Frontiers in Cellular and Infection Microbiology 7:114. DEL MAR FERNANDEZ DE MARCO M; HERNANDEZ-TRIANA LM; PHIPPS LP; Hansford K; MITCHELL ES; Cull B; Swainsbury CS; FOOKS AR; Medlock JM; JOHNSON N 2017 Emergence of Babesia canis in southern England. Parasites and Vectors 10:241. Delgado J; Pollard S; Pearn K; SNARY EL; Black E; Prpich G; Longhurst P 2017 U.K. foot and mouth disease: a systemic risk assessment of existing controls. Risk Analysis 37 (9) 1768-1782. Douet JY; Lacroux C; Aron N; Head MW; Lugan S; Tillier C; Huor A; Cassard H; ARNOLD M; Beringue V; Ironside JW; Andreoletti O 2017 Distribution and quantitative estimates of variant Creutzfeldt-Jakob disease prions in tissues of clinical and asymptomatic patients. Emerging Infectious Diseases 23 (6) 946-956. DREW TW; Mueller-Doblies UU 2017 Dual use issues in research – A subject of increasing concern? Vaccine 35 (44) 5990-5994.

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February 2018

DUFF P 2017 Paul Duff responds to “Diagnosis of botulism in wildfowl” (letter). Veterinary Record 181 (4) 96. DUFF P; APHA Wildlife Expert Group 2017 Recognising clinical avian botulism in wild waterbirds. Veterinary Record 18 (1) 14-15. DUFF P; HOLMES P; BARLOW A 2017 Wildlife: topical issues, recent cases. Veterinary Record 180 (22) 537-538. DUFF P; NEALE S; Cromie R; Kerr M; IRVINE R 2017 Suspected avian botulism outbreaks in wild waterbirds (letter). Veterinary Record 181 (7) 179-180. DUGGETT NA; SAYERS E; ABUOUN M; ELLIS RJ; NUNEZ-GARCIA J; RANDALL L; HORTON R; ROGERS J; MARTELLI F; SMITH RP; BRENA C; WILLIAMSON S; KIRCHNER M; DAVIES R; Crook D; EVANS S; TEALE C; ANJUM MF 2017 Occurrence and characterization of mcr-1-harbouring Escherichia coli isolated from pigs in Great Britain from 2013 to 2015. Journal of Antimicrobial Chemotherapy 72 (3) 691-695. EDWARDS JC; EVERETT HE; PEDRERA M; MOKHTAR H; Marchi E; SOLDEVILA F; KAVEH DA; HOGARTH PJ; JOHNS HL; NUNEZ-GARCIA J; STEINBACH F; CROOKE HR; GRAHAM SP 2017 CD1- and CD1+ porcine blood dendritic cells are enriched for the orthologues of the two major mammalian conventional subsets. Scientific Reports 7, Article number: 40942. EVEREST DJ; FLOYD T; DONNACHIE B; IRVINE RM; HOLMES JP; Shuttleworth CM 2017 Confirmation of squirrelpox in Welsh red squirrels (letter). Veterinary Record 181 (19) 514-515. EVEREST DJ; HOLMES JP; Shuttlworth CM; IRVINE RM 2017 Virus presence within Welsh red squirrels (letter). Veterinary Record 180 (21) 520-521. Faulkner SC; Verity R; Roberts D; Roy SS; ROBERTSON PA; Stevenson MD; Le Comber SC 2017 Using geographic profiling to compare the value of sightings vs trap data in a biological invasion. Diversity and Distributions 23 (1) 104-112. Fontaine MC; Thatcher O; Ray N; Piry S; Brownlow A; DAVISON NJ; Jepson P; Deaville R; Goodman SJ 2017 Mixing of porpoise ecotypes in southwestern UK waters revealed by genetic profiling. Royal Society Open Science 4: 160992.

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February 2018

FOOKS AR; Cliquet F; Finke S; Freuling C; Hemachudha T; Mani RS; Muller T; Nadin-Davis S; Picard-Meyer E; Wilde H; BANYARD AC 2017 Rabies. Nature Reviews Disease Primers 3, Article number: 17091. FOOKS AR; Holmstrom LK 2017 United Nations Secretary-General's Mechanism. Revue Scientific et Technique 36 (2) 629-637. Franklin DN; BROWN MA; Datta S; Cuthbertson AGS; Budge GE; Keeling MJ 2017 Invasion dynamics of Asian hornet, Vespa velutina (Hymenoptera: Vespidae): a case study of a commune in south-west France. Applied Entomology and Zoology 52 (2) 221-229. FROSSARD J-P; GRIERSON S; CHENEY T; STEINBACH F; CHOUDHURY B; WILLIAMSON S 2017 UK pigs at the time of slaughter: investigation into the correlation of infection with PRRSV and HEV. Viruses 9 (6) 110. FROST A 2017 Feeding of raw Brucella suis-infected meat to dogs in the UK (letter). Veterinary Record 181 (18) 484. FULLER C; LONDT B; Dimitrov KM; Lewis N; van Boheemen S; Fouchier R; Coven F; Goujgoulova G; Haddas R; BROWN I 2017 An epizootiological report of the re-emergence and spread of a lineage of virulent Newcastle disease virus into Eastern Europe. Transboundary and Emerging Diseases 64 (3) 1001-1007. Gibbens N; Huey RJ; Voas S; Glossop C; Ravetz G; WELCHMAN D 2017 Work together to spread H5N8 prevention advice (letter). Veterinary Times 47 (7) 31. GOHARRIZ H; MARSTON DA; Sharifzoda F; ELLIS RJ; Horton DL; Khakimov T; WHATMORE A; Khamroev K; Makmadshoev AN; Bazarov M; FOOKS AR; BANYARD AC 2017 First complete genomic sequence of a rabies virus from the Republic of Tajikistan obtained directly from a Flinders Technology Associates card. Genome Announcements 5 (27) e00515-17. GOSLING RJ; MAWHINNEY I; VAUGHAN K; DAVIES RH; SMITH RP 2017 Efficacy of disinfectants and detergents intended for a pig farm environment where salmonella is present. Veterinary Microbiology 204, 46-53.

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Gossner CM; Marrama L; Carson M; Allerberger F; Calistri P; Dilaveris D; Lecollinet S; Morgan D; Nowotny N; Paty M; Pervanidou D; Rizzo C; ROBERTS H; Schmoll F; Van Bortel W; Gervelmeyer A 2017 West Nile virus surveillance in Europe: moving towards an integrated animal-human-vector approach. Eurosurveillance 22 (18) 30526. GOWTAGE S; WILLIAMS GA; Henderson R; Aylett P; MacMorran D; PALMER S; ROBERTSON A; LESELLIER S; CARTER SP; CHAMBERS MA 2017 Testing of a palatable bait and compatible vaccine carrier for the oral vaccination of European badgers (Meles meles) against tuberculosis. Vaccine 35 (6) 987-992. Halsby K; TWOMEY DF; FEATHERSTONE C; Foster A; Walsh A; Hewitt K; Morgan D 2017 Zoonotic diseases in South American camelids in England and Wales. Epidemiology and Infection 145 (5) 1037-1043. Hamilton CA; Mahan S; Bell CR; VILLARREAL-RAMOS B; Charleston B; Entrican G; Hope JC 2017 Frequency and phenotype of natural killer cells and natural killer cell subsets in bovine lymphoid compartments and blood. Immunology 151 (1) 89-97. Hampson K; Abela-Ridder B;Brunker K; Bucheli STM; Carvalho M; Caldas E; Changalucha J; Cleaveland S; Dushoff J; Gutierrez V; FOOKS AR; Hotopp k; Haydon DT; Lugelo A; Lushasi K; Mancy R; MARSTON DA; Mtema Z; Rajeev M; Dourado LRMP; Roldan JFG; Rysava K; Rocha SM; Sambo M; Sikana L; Vigilato M; Del Rio Vilas V 2017 Surveillance to establish elimination of tranmission and freedom from dog-mediated rabies. bioRxiv preprint. Hansford KM; PHIPPS LP; Cull B; Pietzsch ME; Medlock JM 2017 Rhipicephalus sanguineus importation into the UK: surveillance, risk, public health awareness and One Health response. Veterinary Record 180 (5) 119. HARRIS KA; BRUNTON L; BROUWER A; ROMERO GARCIA MP; GIBBENS JC; SMITH NH; UPTON PA 2017 Bovine TB infection status in cattle in Great Britain in 2015. Veterinary Record 180 (7) 170-175. HARRIS KA; Freidl GS; Munoz OS; von Dobschuetz S; De Nardi M; Wieland B; Koopmans MPG; Stark KDC; van Reeth K; Dauphin G; Meijer A; de Bruin E; Capua I; HILL AA; KOSMIDER R; BANKS J; Stevens K; van der Werf S; Enouf V; van der Muelen K; BROWN IH; ALEXANDER DJ; BREED AC; the FLURISK Consortium 2017 Epidemiological risk factors for animal influenza A viruses overcoming species barriers. EcoHealth 14 (2) 342-360.

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February 2018

HATELEY G; CARSON A 2017 Salmonella investigations in ruminants. Veterinary Record 181 (14) 366-367. HERNANDEZ-TRIANA LM; Brugman VA; Prosser SWJ; Weland C; Nikolova N; THORNE L; FERNANDEZ DE MARCO M; FOOKS AR; JOHNSON N 2017 Molecular approaches for blood meal analysis and species identification of mosquitoes (Insecta: Diptera: Culicidae) in rural locations in southern England, United Kingdom. Zootaxa 4250 (1) 67-76. HERNANDEZ-TRIANA LM; Montes De Oca F; Prosser SWJ; Hebert PDN; Gregory TR; McMurtrie S 2017 DNA barcoding as an aid for species identification in austral black flies (Insecta: Diptera: Simuliidae). Genome 60 (4) 348-357. HORIGAN V; GALE P; KOSMIDER RD; Minnis C; SNARY EL; BREED AC; SIMONS RRL 2017 Application of a quantitative entry assessment model to compare the relative risk of incursion of zoonotic bat-borne viruses into European Union Member States. Microbial Risk Analysis 7, 8-28. Howell KJ; Weinert LA; Peters SE; Wang J; Hernandez-Garcia J; Chaudhuri RR; Luan S-L; Angen O; Aragon V; WILLIAMSON SM; Langford PR; Rycroft AN; Wren BW; Maskell DJ; Tucker AW 2017 "Pathotyping" multiplex PCR assay for Haemophilus parasuis: a tool for prediction of virulence. Journal of Clinical Microbiology 55 (9) 2617-2628. Howson ELA; SOLDAN A; WEBSTER K; Beer M; Zientara S; Belak S; Sanchez-Vizcaino JM; Van Borm S; King DP; Fowler VL 2017 Technological advances in veterinary diagnostics: opportunities to deploy rapid decentralised tests to detect pathogens affecting livestock. Revue Scientific et Technique 36 (2) 479-498. Huor A; Douet JY; Lacroux C; Lugan S; Tillier C; Aron N; Cassard H; ARNOLD M; Torres JM; Ironside JW; Andreoletti O 2017 Infectivity in bone marrow from sporadic CJD patients. Journal of Pathology 243 (3) 273-278. Iraola G; Forster SC; Kumar N; Lehours P; Bekal S; Garcia-Pena FJ; Paolicchi F; Morsella C; Hotzel H; Hsueh P-R; VIDAL A; Levesque S; Yamazaki W; Balzan C; Vargas A; Piccirillo A; Chaban B; Hill JE; Betancor L; Collado L; Truyers I; Midwinter AC; Dagi HT; Megraud F; Calleros L; Perez R; Naya H; Lawley TD 2017 Distinct campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota. Nature Communications 8: 1367.

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JEFFREY M; GONZALEZ L; SIMMONS MM; Hunter N; MARTIN S; MCGOVERN G 2017 Altered trafficking of abnormal prion protein in atypical scrapie: prion protein accumulation in oligodendroglial inner mesaxons. Neuropathology and Applied Neurobiology 43 (3) 215-226. JEFFREY M; MCGOVERN G 2017 Subcellular and molecular changes associated with abnormal PrP accumulation in brain and viscera of classical and atypical prion disease. In: Liberski PP (ed), Prion Diseases; Human Press; New York; 2017; 99-121. JOHNSON N 2017 Tick-virus interactions: toll sensing. Frontiers in Cellular and Infection Microbiology 7:293. JONES GJ; COAD M; KHATRI B; Bezos J; Parlane NA; Buddle BM; VILLARREAL-RAMOS B; HEWINSON RG; VORDERMEIER HM 2017 Tuberculin skin testing boosts interferon gamma responses to DIVA reagents in Mycobacterium bovis-infected cattle. Clinical and Vaccine Immunology 24 (5) e00551-16. Jones RA; Brophy PM; MITCHELL ES; Williams HW 2017 Rumen fluke (Calicophoron daubneyi) on Welsh farms: prevalence, risk factors and observations on co-infection with Fasciola hepatica. Parasitology 144 (2) 237-247. JUDGE J; WILSON GJ; Macarthur R; MCDONALD RA; DELAHAY RJ 2017 Abundance of badgers (Meles meles) in England and Wales. Scientific Reports 7, Article number: 276. Keeling MJ; Datta S; Franklin DN; FLATMAN I; WATTAM A; BROWN M; Budge GE 2017 Efficient use of sentinel sites: detection of invasive honeybee pests and diseases in the UK. Journal of the Royal Society Interface 14 (129) 20160908. Keeling MJ; Franklin DN; Datta S; BROWN MA; Budge GE 2017 Predicting the spread of the Asian hornet (Vespa velutina) following its incursion into Great Britain. Scientific Reports 7: Article 6240. Kershaw JL; STUBBERFIELD EJ; Foster G; Brownlow A; Hall AJ; PERRETT LL 2017 Exposure of harbour seals Phoca vitulina to brucella in declining populations across Scotland. Diseases of Aquatic Organisms 126, 13-23. KIRCHNER M; LEMMA F; RANDALL L; ANJUM MF 2017 Loop-mediated isothermal amplification for extended spectrum Beta-lactamase gene detection in poultry carcases. Veterinary Record 181 (5) 119.

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Klein U; de Jong A; Moyaert H; El Garch F; Leon R; Richard-Mazet A; Rose M; Maes D; Pridmore A; Thomson JR; AYLING RD 2017 Antimicrobial susceptibility monitoring of Mycoplasma hyopneumoniae and Mycoplasma bovis isolated in Europe. Veterinary Microbiology 204, 188-193. KONOLD T; PHELAN LJ; DONNACHIE BR; CHAPLIN MJ; CAWTHRAW S; GONZALEZ L 2017 Codon 141 polymorphisms of the ovine prion protein gene affect the phenotype of classical scrapie transmitted from goats to sheep. BMC Veterinary Research 13:122. KOSMIDER R; GIBBENS J; AVIGAD R 2017 Identification, assessment and management of new and re-emerging animal-related risks: UK perspective. Veterinary Record 181 (3) 67. Kwan NCL; Sugiura K; Hosoi Y; Yamada A; SNARY EL 2017 Quantitative risk assessment of the introduction of rabies into Japan through the importation of dogs and cats worldwide. Epidemiology and Infection 145 (6) 1168-1182. LAMBERT M; BELLAMY F; BUDGEY R; CALLABY R; COATS J; TALLING J 2018 Validating activity indices from camera traps for commensal rodents and other wildlife in and around farm buildings. Pest Management Science 74 (1) 70-77. LAMBERT M; VIAL F; PIETRAVALLE S; COWAN D 2017 Results of a 15-year systematic survey of commensal rodents in English dwellings. Scientific Reports 7, Article number 15882. Lambton SL; BROUWER A; Knowles TG; Richards G; Statham PTE; Walton J; Weeks CA 2017 Factors affecting the ability of sheep to rest during time in markets in Great Britain. Animal Welfare 26 (1) 83-93. Leger A; De Nardi M; SIMONS R; ADKIN A; Ru G; Estrada-Pena A; Stark KDC 2017 Assessment of biosecurity and control measures to prevent incursion and to limit spread of emerging transboundary animal diseases in Europe: an expert survey. Vaccine 35 (44) 5956-5966. LINE K 2017 Changes to APHA laboratory testing locations (letter). Veterinary Record 181 (24) 660. Lopez J; HAYCOCK J; Mckenzie A; SEILERN-MOY K; DASTJERDI A 2017 Assessment of a lancet-and-swab blood sampling technique for surveillance of elephant endotheliotropic herpesvirus infection. Journal of Zoo and Wildlife Medicine 48 (3) 659-667.

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Love JW; KELLY LA; Lester HE; Nanjiani I; Taylor MA; Robertson C 2017 Investigating anthelmintic efficacy against gastrointestinal nematodes in cattle by considering appropriate probability distributions for faecal egg count data. International Journal for Parasitology: Drugs and Drug Resistance 7 (1) 71-82. Lu ZH; Wang X; Wilson AD; Dorey-Robinson DLW; Archibald AL; Ait-Ali T; FROSSARD J-P 2017 Quasispecies evolution of the prototypical genotype 1 porcine reproductive and respiratory syndrome virus early during in vivo infection is rapid and tissue specific. Archives of Virology 162 (8) 2203-2210. LUMLEY S; Horton DL; HERNANDEZ-TRIANA LLM; JOHNSON N; FOOKS AR; Hewson R 2017 Rift Valley fever virus: strategies for maintenance, survival and vertical transmission in mosquitoes. Journal of General Virology 98 (5) 875-887. Luna A; Franz D; Strubbe D; Shwartz A; Braun MP; Hernadez-Brito D; Malihi Y; Kaplan A; Mori E; Menchetti M; van Turnhout CAM; PARROTT D; Chmielewski F-M; Edelaar P 2017 Reproductive timing as a constraint on invasion success in the Ring-necked parakeet (Psittacula krameri). Biological Invasions 19 (8) 2247-2259. Lyashchenk KP; Grandison A; Keskinen K; Sikar-Gang A; Lambotte P; Esfandiari J; Ireton GC; Vallur A; Reed SG; JONES G; VORDERMEIER HM; Stabel JR; Thacker TC; Palmer MV; Water WR 2017 Identification of novel antigens recognized by serum antibodies in bovine tuberculosis. Clinical and Vaccine Immunology 24 (12) e00259-17. Mandal SS; DUNCOMBE L; Ganesh NV; Sarkar S; HOWELLS L; HOGARTH PJ; Bundle DR; MCGIVEN J 2017 Novel solutions for vaccines and diagnostics to combat brucellosis. ACS Central Science 3 (3) 224-231. MANSFIELD KL; COOK C; ELLIS RJ; Bell-Sakyi L; JOHNSON N; Alberdi P; de la Fuente J; FOOKS AR 2017 Tick-borne pathogens induce differential expression of genes promoting cell survival and host resistance in Ixodes ricinus cells. Parasites and Vectors 10:81. MANSFIELD KL; HERNANDEZ-TRIANA LM; BANYARD AC; FOOKS AR; JOHNSON N 2017 Japanese encephalitis virus infection, diagnosis and control in domestic animals. Veterinary Microbiology 201, 85-92. MANSFIELD KL; JIZHOU L; PHIPPS LP; JOHNSON N 2017 Emerging tick-borne viruses in the twenty-first century. Frontiers in Cellular and Infection Microbiology 7: 298.

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MARIER E; DAWSON M; SIMMONS M; HOPE J; ORTIZ-PELAEZ A 2017 Case-control study on the use of pituitary-derived hormones from sheep as a potential risk factor for the occurrence of atypical scrapie in Great Britain. Veterinary Record 180 (16) 403. Marino J; Sillero-Zubiri C; Deressa A; Bedlin E; Bitewa A; Lema F; Rskay G; BANYARD A; FOOKS AR 2017 Rabies and distemper outbreaks in smallest Ethiopian wolf population (letter). Emerging and Infectious Diseases 23 (12) 2102-2104. MARSTON DA; BANYARD AC; MCELHINNEY LM; Freuling CM; Finke S; de Lamballerie X; Muller T; FOOKS AR 2018 The lyssavirus host-specificity conundrum — rabies virus — the exception not the rule. Current Opinion in Virology 28, 68-73. MARSTON DA; ELLIS RJ; WISE EL; Arechiga-Ceballos N; Freuling CM; BANYARD AC; MCELHINNEY LM; de Lamballerie X; Muller T; FOOKS AR; Echevarria JE 2017 Complete genome sequence of Lleida bat lyssavirus. Genome Announcements 5 (2) e01427-16. MARSTON DA; Horton DL; NUNEZ J; ELLIS RJ; Orton RJ; JOHNSON N; BANYARD AC; MCELHINNEY LM; Freuling CM; Firat M; Unal N; Muller T; de Lamballerie X; FOOKS AR 2017 Genetic analysis of a rabies virus host shift event reveals within-host viral dynamics in a new host. Virus Evolution 3 (2) vex038. MARSTON DA; WATSON J; WISE EL; ELLIS RJ; Bedin E; Ayalew G; Abute M; de Lamballerie X; FOOKS AR; Sillero-Zubiri C; BANYARD AC 2017 Complete genomic sequence of canine distemper virus from an Ethiopian wolf. Genome Announcements 5 (29) e00621-17. MARTELLI F; GOSLING RJ; CALLABY R; DAVIES R 2017 Observations on salmonella contamination of commercial duck farms before and after cleaning and disinfection. Avian Pathology 46 (2) 131-137. MARTELLI F; LAMBERT M; Butt P; CHENEY T; TATONE FA; CALLABY R; RABIE A; GOSLING RJ; Fordon S; Crocker G; DAVIES RH; SMITH RP 2017 Evaluation of an enhanced cleaning and disinfection protocol in salmonella contaminated pig holdings in the United Kingdom. PLoS ONE 12(6): e0178897. MARTELLI F; WALES A; DAVIES R 2017 Of mice and hens - tackling salmonella in table egg production in the United Kingdom and Europe. In: Ricke SC (ed); Gast RK (ed), Producing safe eggs: microbial ecology of salmonella, Elsevier, London, 2017, 3-23.

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MASSEI G; FOOKS AR; HORTON DL; CALLABY R; Sharma K; Dhakal IP; Dahal U 2017 Free-roaming dogs in Nepal: demographics, health and public knowledge, attitudes and practices. Zoonoses and Public Health 64 (1) 29-40. Matos C; Petrovan S; WARD AI; Wheeler P 2017 Facilitating permeability of landscapes impacted by roads for protected amphibians: patterns of movement for the great crested newt. PeerJ 5:e2922. MAYERS J; MANSFIELD KL; BROWN IH 2017 The role of vaccination in risk mitigation and control of Newcastle disease in poultry. Vaccine 35 (44) 5974-5980. MCELHINNEY LM; MARSTON DA; Pounder KC; GOHARRIZ H; WISE EL; Verner-Carlsson J; JENNINGS D; JOHNSON N; CIVELLO A; NUNEZ A; Brooks T; BREED AC; LAWES J; Lundkvist A; FEATHERSTONE CA; FOOKS AR 2017 High prevalence of Seoul hantavirus in a breeding colony of pet rats. Epidemiology and Infection 145 (15) 3115-3124. McNeil M; Gerber PF; Thomson J; WILLIAMSON S; Opriessnig T 2017 Serotypes and Spa types of Erysipelothrix rhusiopathiae isolates from British pigs (1987 to 2015). Veterinary Journal 225, 13-15. Medlock JM; Hansford KM; Vaux AGC; Cull B; Abdullah S; Pietzsch ME; Wall R; JOHNSON N; PHIPPS LP 2017 Distribution of the tick Dermacentor reticulatus in the United Kingdom. Medical and Veterinary Entomology 31 (3) 281-288. Menghwar H; He C; Zhang H; Zhao G; Zhu X; Khan FA; Faisal M; Rasheed MA; Zubair M; Memon AM; RIDLEY A; Robertson ID; Chen Y; Guo A 2017 Genotype distribution of Chinese Mycoplasma bovis isolates and their evolutionary relationship to strains from other countries. Microbial Pathogenesis 111, 108-117. Millar M; CARSON A 2017 Holly leaf ingestion causing pharyngeal obstruction in lambs (letter). Veterinary Record 180 (23) 574-575. Millar M; Foster A; Bradshaw J; Turner A; Blowey R; Evans N; HATELEY G 2017 Embolic pneumonia in adult dairy cattle associated with udder cleft dermatitis (letter). Veterinary Record 180 (8) 205-206. Millar M; Foster A; Mitchell G; Skuce P; WESSELS J; VELO-REGO E; COLLINS R; Stevenson H 2017 Rumen fluke in South American camelids in Great Britain (letter). Veterinary Record 181 (5) 123-124.

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MOKHTAR H; BIFFAR L; Somavarapu S; FROSSARD J-P; MCGOWAN S; PEDRERA M; STRONG R; EDWARDS JC; Garcia-Duran M; Rodriguez MJ; Stewart GR; STEINBACH F; GRAHAM SP 2017 Evaluation of hydrophobic chitosan-based particulate formulations of porcine reproductive and respiratory syndrome virus vaccine candidate T cell antigens. Veterinary Microbiology 209, 66-74. Moldal T; Vikoren T; Cliquet F; MARSTON DA; van der Kooij J; Madslien K; Orpetveit I 2017 First detection of European bat lyssavirus type 2 (EBLV-2) in Norway. BMC Veterinary Research 13:216. Morgan J; Pintos V; Rys H; Wake T; GRACE K; PERRETT L; WHATMORE A; Edwards D 2017 Brucella canis in a dog in the UK (letter). Veterinary Record 180 (15) 384-385. NICHOLAS RAJ 2016 Contagious agalactia. In: The Merck Veterinary Manual, 11th ed, Merck, 2016, 1352-1354. O'Hanlon NJ; LAMBERT MS 2017 Investigating brown rat Rattus norvegicus egg predation using experimental nests and camera traps. European Journal of Wildlife Research 63 (1) 18. Orlek A; Phan H; Sheppard AE; Doumith M; Ellington M; Peto T; Crook D; Walker AS; Woodford N; ANJUM MF; Stoesser N 2017 A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database. Data in Brief 12, 423-426. Orlek A; Phan H; Sheppard AE; Doumith M; Ellington M; Peto T; Crook D; Walker AS; Woodford N; ANJUM MF; Stoesser N 2017 Ordering the mob: insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids. Plasmid 91, 42-52. Orlek A; Stoesser N; ANJUM MF; Doumith M; Ellington MJ; Peto T; Crook D; Woodford N; Walker AS; Phan H; Sheppard AE 2017 Plasmid-classification in an era of whole-genome sequencing: application in studies of antibiotic resistance epidemiology. Frontiers in Microbiology 8:182. Ortega-Morales AI; Rodriguez QKS; Garza-Hernandez JA; Adeniran AA; HERNANDEZ-TRIANA LM; Rodriguez-Perez MA 2017 First record of the ant cricket Myrmecophilus (Myrmecophilina) americanus (Orthoptera: Myrmecophilidae) in Mexico. Zootaxa 4258 (2) 195-200.

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OTTER A; APHA Cattle Expert Group 2017 Alimentary and respiratory disease trends for calves, 2011 to 2016. Veterinary Record 180 (6) 144-145. OTTER A; APHA Cattle Expert Group 2017 Risks for cattle at turnout. Veterinary Record 180 (14) 351-352. OTTER A; HATELEY G 2017 Blood cholesterol concentrations in dairy calves (letter). Veterinary Record 180 (2) 52. PALPHRAMAND K; DELAHAY R; ROBERTSON A; GOWTAGE S; WILLIAMS GA; McDonald RA; CHAMBERS M; CARTER SP 2017 Field evaluation of candidate baits for oral delivery of BCG vaccine to European badgers, Meles meles. Vaccine 35 (34) 402-4407. Papoula-Pereira R; Hancock B; MITCHELL S; Semple H; McGarry JW 2017 Dicrocoeliosis in sheep in England and Wales: under diagnosed and misdiagnosed? Veterinary Record Case Reports 5 (1) e000386. Papsavva-Stylianou P; SIMMONS MM; ORTIZ-PELAEZ A; WINDL O; SPIROPOULOS J; Georgiadou S 2017 Effect of polymorphisms at codon 146 of the goat PRNP gene on susceptibility to challenge with classical scrapie by different routes. Journal of Virology 91 (22) e01142-17. Parsons N; Warren P; DUFF JP; Baines 2017 Has respiratory cryptosporidiosis spread to black grouse Tetrao tetrix? Veterinary Record 181 (20) 540. Pascual-Linaza AV; Gordon AW; STRINGER LA; Menzies FD 2017 Efficiency of slaughterhouse surveillance for the detection of bovine tuberculosis in cattle in Northern Ireland. Epidemiology and Infection 145 (5) 995-1005. PAYNE J 2017 A field approach to suspected poisoning in cattle and sheep. Cattle Practice 25 (2) 111-112. Peel AJ; Wood JLN; Baker KS; BREED AC; De Carvalho A; Fernandez-Loras A; Gabrieli HS; Gembu G-C; Kakengi VA; Kaliba PM; Kityo RM; Lembo T; Mba FE; Ramos D; Rodriguez-Prieto I; Suu-Ire R; Cunningham AA; Hayman DTS 2017 How does Africa's most hunted bat vary across the continent? Population traits of the straw-coloured fruit bat (Eidolon helvum) and its interactions with humans. Acta Chiropterologica 19 (1) 77-92.

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Pepin M; Dupinay T; Zilber A-L; MCELHINNEY LM 2016 Of rats and pathogens: pathogens transmitted by urban rats with an emphasis on hantaviruses. CAB Reviews 11, No. 19. Pepponi I; KHATRI B; Tanner R; VILLARREAL-RAMOS B; VORDERMEIER M; McShane H 2017 A mycobacterial growth inhibition assay (MGIA) for bovine TB vaccine development. Tuberculosis 106, 118-122. PETROVSKA L; TANG Y; Jansen van Rensburg MJ; CAWTHRAW S; NUNEZ J; Sheppard SK; ELLIS RJ; WHATMORE AM; CRAWSHAW TR; IRVINE RM 2017 Genome reduction for niche association in Campylobacter hepaticus, a cause of spotty liver disease in poultry. Frontiers in Cellular and Infection Microbiology 7: Article 354. Phelps AL; O'Brien LM; Eastaugh LS; Davies C; Lever MS; Ennis J; Zeitlin L; NUNEZ A; Ulaeto DO 2017 Susceptibility and lethality of western equine encephalitis virus in Balb/c mice when infected by the aerosol route. Viruses 2017, 9 (7), 163. Pluta A; Rola-Luszczak M; Kubis P; Balov S; Moskalik R; CHOUDHURY B; Kuzmak J 2017 Molecular characterization of bovine leukemia virus from Moldovan dairy cattle. Archives of Virology 162 (6) 1563-1576. Pomba C; Rantala M; Greko C; Baptiste KE; Catry B; van Duijkeren E; Mateus A; Moreno MA; Pyorala S; Ruzauskas M; Sanders P; TEALE C; Threlfall EJ; Kunsagi Z; Torren-Edo J; Jukes H; Torneke K 2017 Public health risk of antimicrobial resistance transfer from companion animals. Journal of Antimicrobial Chemotherapy 72 (4) 957-968. Race B; JEFFREY M; MCGOVERN G; Dorward D; Chesebro B 2017 Ultrastructure and pathology of prion protein amyloid accumulation and cellular damage in extraneural tissues of scrapie-infected transgenic mice expressing anchorless prion protein. Prion 11 (4) 234-248. READMAN JB; Dickson G; COLDHAM NG 2017 Tetrahedral DNA nanoparticle vector for intracellular delivery of targeted peptide nucleic acid antisense agents to restore antibiotic sensitivity in Cefotaxime-resistant Escherichia coli. Nucleic Acid Therapeutics 27 (3) 176-181. Reed B; BEATHAM S; CARTER S; Clubb R; Garrod K; Gale M; GOMM M; Knight K; LANE J; Mathews F; Pimlott P; Smith A; Wilson R; WEYER U; Hawkins P 2017 Report of a RSPCA/APHA meeting on the welfare of wild animals used in research. Animal Technology and Welfare 16, 13-25.

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RHODES S 2017 The science of comprehensive TB testing. Official Vet Magazine, June 2017, 14, 16. RIITHO V; WALTERS AA; Somavarapu S; Lamp B; Rumenapf T; Krey T; Rey FA; Oviedo-Orta E; Stewart GR; Locker N; STEINBACH F; GRAHAM SP 2017 Design and evaluation of the immunogenicity and efficacy of a biomimetic particulate formulation of viral antigens. Scientific Reports 7: 13743. ROBERTS H 2017 African swine fever in eastern Europe: the risk to the UK. Veterinary Record 181 (10) 261-262. ROBERTS H 2017 Equine infectious anaemia in Europe: an ongoing threat to the UK. Veterinary Record 181 (17) 442-446. ROBERTSON A; DELAHAY RJ; WILSON GJ; VERNON IJ; McDonald RA; Judge J 2017 How well do farmers know their badgers? Relating farmer knowledge to ecological survey data. Veterinary Record 180 (2) 48-51. ROBERTSON PA; Adriaens T; Lambin X; Mill A; Roy S; Shuttleworth CM; SUTTON-CROFT M 2017 The large-scale removal of mammalian invasive alien species in Northern Europe. Pest Management Science 73 (2) 273-279. RODGERS JD; SIMPKIN E; LEE R; CLIFTON-HADLEY FA; VIDAL AB 2017 Sensitivity of direct culture, enrichment and PCR for detection of Campylobacter jejuni and C. coli in broiler flocks at slaughter. Zoonoses and Public Health 64 (4) 262-271. Roy HE; Hesketh H; Purse BV; Eilenberg J; Santini A; Scalera R; Stentiford GD; Adriaens T; Bacela-Spychalska K; Bass D; Beckmann KM; Bessell P; Bojko J; BOOY O; Cardoso AC; Essl F; Groom Q; Harrower C; Kleespies R; Martinou AF; van Oers MM; Peeler EJ; Pergl J; Rabitsch W; Roques A; Schaffner F; Schindler S; Schmidt BR; Schonrogge K; SMITH J; Solarz W; Stewart A; Stroo A; Tricarico E; Turvey KMA; Vannini A; Vila M; Woodward S; Wynns AA; Dunn AM 2017 Alien pathogens on the horizon: opportunities for predicting their threat to wildlife. Conservation Letters 10 (4) 476-483. Roy S; ROBERTSON PA 2017 Matching the strategy to the scenario; case studies of mink Neovison vison management. Mammal Study 42 (2) 71-80.

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February 2018

SALGUERO FJ; Gibson S; Garcia-Jimenez W; GOUGH J; STRICKLAND TS; VORDERMEIER HM; VILLARREAL-RAMOS B 2017 Differential cell composition and cytokine expression within lymph node granulomas from BCG-vaccinated and non-vaccinated cattle experimentally infected with Mycobacterium bovis. Transboundary and Emerging Diseases 64 (6) 1734-1749. Saul W-C; Roy HE; BOOY O; Carnevali L; Chen H-J; Genovesi P; Harrower CA; Hulme PE; Pagad S; Pergl J; Jeschke JM 2017 Assessing patterns in introduction pathways of alien species by linking major invasion data bases. Journal of Applied Ecology 54 (2) 657-669. SCHROEDER PG; Sneddon LU 2017 Exploring the efficacy of immersion analgesics in zebrafish using an integrative approach. Applied Animal Behaviour Science 187, 93-102. Serrano M; Elguezabal N; Sevilla IA; Geijo MV; Molina E; Arrazuria R; Urkitza A; JONES GJ; VORDERMEIER M; Garrido JM; Juste RA 2017 Tuberculosis detection in paratuberculosis vaccinated calves: new alternatives against interference. PLoS ONE 12(1): e0169735. Shahhosseini N; Chinikar S; Shams E; Nowotny N; FOOKS AR 2017 Crimean-Congo hemorrhagic fever cases in the North of Iran have three distinct origins. VirusDisease 28 (1) 50-53. Shahhosseini N; Jafarbekloo A; Telmadarraiy Z; Chinikar S; Haeri A; Nowotny N; Groschup MH; FOOKS AR; Faghihi F 2017 Co-circulation of Crimean-Congo hemorrhagic fever virus strains Asia 1 and 2 between the border of Iran and Pakistan. Heliyon 3 (11) e00439. SHARMA M; KIRCHNER M; FEARNLEY C; GILES M; SMITH L; Brown D; ANJUM MF 2017 Real-time PCR for the detection of leptospira species in lungworm preparations. Veterinary Record 181 (8) 197. Silk MJ; Croft DP; DELAHAY RJ; Hodgson DJ; Boots M; Weber N; McDonald RA 2017 Using social network measures in wildlife disease ecology, epidemiology, and management. BioScience 67 (3) 245-257. Silk MJ; Croft DP; DELAHAY RJ; Hodgson DJ; Weber N; Boots M; McDonald RA 2017 The application of statistical network models in disease research. Methods in Ecology and Evolution 8 (9) 1026-1041.

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February 2018

Silk MJ; Weber N; Steward LC; DELAHAY RJ; Croft DP; Hodgson DJ; Boots M; McDonald RA 2017 Seasonal variation in daily patterns of social contacts in the European badger Meles meles. Ecology and Evolution 7 (21) 9006-9015. SIMONS RRL; ARNOLD ME; ADKIN A 2017 Assessing the time taken for a surveillance system to detect a re-emergence of bovine spongiform encephalopathy in cattle. Preventive Veterinary Medicine 138, 48-54. SIMONS RRL; HORIGAN V; De Nardi M; Ru G; Pena AE; ADKIN A 2017 Mighty models from little data grow: estimating animal disease prevalence. In: Nielsen LR (ed); Lindberg A (ed), Society for Veterinary Epidemiology and Preventive Medicine: proceedings of a meeting held in Inverness, Scotland, 29th - 31st March 2017, 166-175. Simpson V; EVEREST D; DASTJERDI A; DAVIES H; Hargreaves J 2017 Unusual presentation of myxomatosis (letter). Veterinary Record 181 (13) 350-351. Sims LD; BROWN IH 2017 Multi-continental panzootic of H5 highly pathogenic avian influenza (1996-2015). In: Swayne D (ed), Animal Influenza, 2nd ed, John Wiley and Sons, Ames, Iowa, 2017, 202-247. SMITH F; ROBERTSON A; SMITH GC; Gill P; McDonald RA; Wilson G; DELAHAY RJ 2017 Estimating wildlife vaccination coverage using genetic methods. bioRxiv preprint. SMITH RP; ANDRES V; DORMER L; GOSLING R; OASTLER C; DAVIES RH 2017 Study of the impact on salmonella of moving outdoor pigs to fresh land. Epidemiology and Infection 145 (10) 1983-1992. Sookhoo JRV; Brown-Jordan A; Blake L; Holder RB; BROOKES SM; ESSEN S; Carrington CVF; BROWN IH; Oura CAL 2017 Seroprevalence of economically important viral pathogens in swine populations of Trinidad and Tobago, West Indies. Tropical Animal Health and Production 49 (6) 1117-1124. Sovova T; KERINS G; Demnerova K; Ovesna J 2017 Genome editing with engineered nucleases in economically important animals and plants: state of the art in the research pipeline. Current Issues in Molecular Biology 21: 41-62. SPIROPOULOS J; SIMMONS MM 2017 Pathology of animal transmissible spongiform encephalopathies (TSEs). Food Safety 5 (1) 1-9.

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February 2018

Stanbury A; Thomas S; AEGERTER J; Brown A; Bullock D; Eaton M; Lock L; Luxmoore R; Roy S; Whitaker S; Oppel S 2017 Prioritising islands in the United Kingdom and crown dependencies for the eradication of invasive alien vertebrates and rodent biosecurity. European Journal of Wildlife Research 63 (1) Article 31. Stark KDC; Goncalves VSP; McCluskey BJ; Pinto J; Tsutsui T; GIBBENS J 2017 Competencies for government veterinary services of the future: Summary of ISVEE 14 Yucatan 2015 roundtable discussion. Preventive Veterinary Medicine 137 (Part B) 151-153. Stewart LD; McCallan L; McNair J; MCGOLDRICK A; MORRIS R; Moyen J-L; De Juan Ferre L; Romero B; Alonso E; Parsons SDC; Van Helden P; Araujo FR; Grant IR 2017 Multilaboratory evaluation of a novel lateral flow immunochromatographic assay for confirming isolation of Mycobacterium bovis from veterinary diagnostic specimens. Journal of Clinical Microbiology 55 (12) 3411-3425. Stewart LD; Tort N; Meakin P; Argudo JM; Nzuma R; Reid N; DELAHAY RJ; ASHFORD R; Montgomery WI; Grant IR 2017 Development of a novel immunochromatographic lateral flow assay specific for Mycobacterium bovis cells and its application in combination with immunomagnetic separation to test badger faeces. BMC Veterinary Research 13:131. Suh T-Y; Roh IS; Kim H-J; GRIFFITHS PC; Park KJ; Park HC; HOPE J; Kang HE; Kim D-Y; Sohn HJ 2017 Biological and biochemical characterization of M2B cells: Classical BSE prion is conserved in transgenic mice overexpressing bovine prion protein gene. Prion 11 (6) 405-414. Suu-Ire RD; FOOKS AR; BANYARD AC; SELDEN D; Amponsah-Mensah K; Riesle S; Ziekah MY; Ntiamoa-Baidu Y; Wood JL; Cunningham AA 2017 Lagos bat virus infection dynamics in free-ranging straw-colored fruit bats (Eidolon helvum). Tropical Medicine and Infectious Disease 2 (3) 25. TANG Y; CAWTHRAW S; Bagnall MC; GIELBERT A; Woodward MJ; PETROVSKA L 2017 Identification of temperature regulated factors of Campylobacter jejuni and their potential roles in virulence. AIMS Microbiology 3 (4) 885-898. Verner-Jeffreys DW; Brazier T; Perez RY; Ryder D; CARD RM; Welch TJ; Hoare R; Ngo T; MCLAREN N; ELLIS R; Bartie KL; Feist SW; Rowe WMP; Adams A; Thompson KD 2017 Detection of the florfenicol resistance gene floR in Chryseobacterium isolates from rainbow trout. Exception to the general rule? FEMS Microbiology Ecology 93 (4) fix015.

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February 2018

WALES AD; DAVIES RH 2017 Salmonella vaccination in pigs: a review. Zoonoses and Public Health 64 (1) 1-13. Wall BA; ARNOLD ME; Radia D; Gilbert W; ORTIZ-PELAEZ A; Stark KD; Van Klink E; Guitian J 2017 Evidence for more cost-effective surveillance options for bovine spongiform encephalopathy (BSE) and scrapie in Great Britain. Eurosurveillance 22 (32) 30594. Waters WR; VORDERMEIER HM; RHODES S; KHATRI B; Palmer MV; Maggioli MF; Thacker TC; Nelson JT; Thomsen BV; Robbe-Austerman S; Bravo Garcia DM; Schoenbaum MA; Camacho MS; Ray JS; Esfandiari J; Lambotte P; Greenwald R; Grandison A; Sikar-Gang A; Lyashchenko KP 2017 Potential for rapid antibody detection to identify tuberculous cattle with non-reactive tuberculin skin test results. BMC Veterinary Research 13:164. Wedley AL; Dawson S; Maddox TW; Coyne KP; Pinchbeck GL; Clegg P; Nuttall T; KIRCHNER M; Williams NJ 2017 Carriage of antimicrobial resistant Escherichia coli in dogs: Prevalence, associated risk factors and molecular characteristics. Veterinary Microbiology 199, 23-30. WELCHMAN D; BRZOZOWSKA A 2017 Looking out for avian influenza in backyard and small poultry flocks. Veterinary Record 181 (23) 618-620. Wessels M; Strugnell B; Woodger N; Peat M; LA ROCCA SA; DASTJERDI A 2017 Systemic necrotizing polyarteritis in three weaned lambs from one flock. Journal of Veterinary Diagnostic Investigation 29 (5) 733-737. WHATMORE AM; DAWSON C; MUCHOWSKI J; PERRETT LL; STUBBERFIELD E; KOYLASS M; Foster G; Davison NJ; Quance C; Sidor IF; Field CL; St. Leger J 2017 Characterisation of north American brucella isolates from marine mammals PLoS ONE 12 (9): e0184758. WHATMORE AM; PERRETT L; Friggens M 2017 Second UK isolation of Brucella canis (letter). Veterinary Record 180 (25) 617. WILLIAMSON S; APHA Pig Expert Group 2017 Congenital tremor associated with atypical porcine pestivirus. Veterinary Record 180 (2) 42-43. WILLIAMSON S; APHA Pig Expert Group 2017 Klebsiella pneumoniae septicaemia in preweaned pigs. Veterinary Record 180 (18) 443.

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February 2018

WISE EL; MARSTON DA; BANYARD AC; GOHARRIZ H; SELDEN D; MACLAREN N; GODDARD T; JOHNSON N; MCELHINNEY LM; BROUWER A; AEGERTER JN; SMITH GC; Horton DL; BREED AC; FOOKS AR 2017 Passive surveillance of United Kingdom bats for lyssaviruses (2005–2015). Epidemiology and Infection 145 (12) 2445-2457. WU G; SELDEN D; FOOKS AR; BANYARD A 2017 Inactivation of rabies virus. Journal of Virological Methods 243, 109-112. Yahara K; Meric G; Taylor AJ; de Vries SPW; Murray S; Pascoe B; Mageiros L; Torralbo A; VIDAL A; RIDLEY A; Komukai S; Wimalarathna H; Cody AJ; Colles FM; McCarthy N; Harris D; Bray JE; Jolley KA; Maiden MCJ; Bentley SD; Parkhill J; Bayliss CD; Grant A; Maskell D; Didelot X; Kelly DJ; Sheppard SK 2017 Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork. Environmental Microbiology 19 (1) 361-380. Zieger U; Cheetham S; Santana SE; Leiser-Miller L; Matthew-Belmar V; GOHARRIZ H; FOOKS AR 2017 Natural exposure of bats in Grenada to rabies virus. Infection Ecology and Epidemiology 7 (1) Article: 1332935.