Goal Usage Implementation Availability

Next-generation sequencingrequest management system

in Galaxy

Brad Chapman

16 May 2010

Goal Usage Implementation Availability

Sequencing CoreResearchers

Samples

Analysis

Goal Usage Implementation Availability

Sample and request infrastructure

Goal Usage Implementation Availability

Functionality

Researcher sample entry

Sequencing tracking and management

Layout of flow cells

Full integration with Galaxy

Goal Usage Implementation Availability

Multiple services

Goal Usage Implementation Availability

Sample entry

Goal Usage Implementation Availability

Organize as projects

Goal Usage Implementation Availability

Project based view

Goal Usage Implementation Availability

Tracking and management

Goal Usage Implementation Availability

Flow cell layout

Goal Usage Implementation Availability

Leverages Galaxy infrastructure

Display

grids

form builder

Databasesamples

requests

events

form values

Added to databaseOne relationship table

Goal Usage Implementation Availability

Sample request relationships

Sample

LibraryConstruction Validation

Pre-sequencingquantitation

SequencingDetails

Sequencingresults 1Requests:

Next-genSequencingRun 1

Next-genSequencingRun 2

Sequencingresults 2

Requests:

Sample 2 Sample 3

Goal Usage Implementation Availability

Community

PositivesConsistent

interface

Excellent backend

Maintainability

Suggestions

High level update

summaries

Internals

documentation

Roadmap

Goal Usage Implementation Availability

Availability

Repository tracking Galaxy development

http://bitbucket.org/chapmanb/

galaxy-central

Hope to integrate with the main code base