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Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

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Page 1: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

Network of Excellence Benchmark

Carlos Oscar SorzanoTechn. Director I2PC

Natl. Center Biotechnology (CSIC)

Page 2: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark

Page 3: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark

• There was a defined task.• The community accepted the challenge.• The result of the challenge could have served

as a starting point to improve 3D angular orientation.

Page 4: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark• The challenge did not arise from the

community: although the community accepted it.

Page 5: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark• Evaluation was a black box: the evaluation

Figure of Merit was unknown a priori.

Page 6: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark• There was not a clear interchange standard:

there was no way of testing that the submitted results where actually in the correct format, coordinate system, Euler signs, …

Page 7: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark• There was a single dataset: there was no

exploration of different packages performing better under different circumstances.

Page 8: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark• Egos were too high

Page 9: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

NoE Benchmark• It was a single shot.

1891: 10.8s1906: 10.6s1911: 10.5s1924: 10.4s1930: 10.3s1936: 10.2s…2009: 9.58s

Page 10: Network of Excellence Benchmark Carlos Oscar Sorzano Techn. Director I 2 PC Natl. Center Biotechnology (CSIC)

For future benchmarks• Well defined task.• Well defined interchange format.• Task proposed by the community.• Different datasets.• Transparent evaluation with pre-test

datasets.• Acceptance of competition as a healthy way

to improve.• Possibility to withdraw from competition.• Competitions should be repeated over time.