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NCBI Literature Databases: PubMed: MyNCBI

Session #1: Sept 13, 2005Session #1: Sept 13, 2005Session #2: Sept 14, 2005Session #2: Sept 14, 2005

Ho Chi Minh City, VietNamHo Chi Minh City, VietNam

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Two Ways to Activate Icons

• A link on your library website

• Through My NCBI

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Activating LinkOut from Library Website

• Default link to PubMed

• Uses a special URL: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?holding=medlib– where medlib is the LinkOut user name

assigned to your library = hinari– http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?

holding=hinari– This will turn on the HINARI icon on PubMed

abstracts where NCBI have the holdings for HINARI.

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• More Special URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?

holding=medlib_fft– where medlib is the LinkOut user name assigned to your

library = hinari– where _fft is for all citations with free full text – http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?

holding=hinari_fft– This will turn on the HINARI icon on those citations with free

full text links AND the hinari holdings. – The icon will be linked to the free full text which may not be

in the hinari collection.– For example: holding=hinari will turn on hinari icon on

2,088,198 citations (April 21, 2005) while holding=hinari_fft will turn on hinari icon on 2,791,601 citations.

– Details:http://www.ncbi.nlm.nih.gov/entrez/linkout/doc/localizing.html#fft

Activating LinkOut from Library Website

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Activating LinkOut through My NCBI

• User signs in to My NCBI and selects LinkOut provider(s) as Filters.

• Provider’s icons will display in search result and provider’s holdings will display as a Filter tab.

• Works only if user is signed into My NCBI.

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MyNCBI

• Formerly called Cubby

• Features: – Saved search strategies to generate updates

including automatic email updates.– Group retrieval results by topics of interest– Add an icon to the filters with links to

resources provided by outside organizations (e.g. HINARI)

– Document Delivery and Outside Tools

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Accessing MyNCBI

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New Users: Register for Free Account

Enter a Password (6-8 alpha numeric characters)

Enter a User Name (3-10 alpha numeric characters)

Note1: Record your username for future references, we will not be able to access this account information.

Note2: No need to re-register if your Cubby account has been active since July 2003.

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New Users: Register for Free Account

Default email address for both automatic email updates and Send to Email feature in PubMed

Note: Only one email address per MyNCBI account

Note2: A confirmation email message will be sent to the email address to activate automatic email updates.

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User Sign In

Box is unchecked = default (sign in for current session only)Box is checked = remain signed in (saved session states) – stored permanent cookies allows for automatic sign in

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A Quick Course on My NCBI

• Select My NCBI from the PubMed® screen.

• Sign in to My NCBI, or register for My NCBI, then sign in.

– You can sign in using your Cubby username and password

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A Quick Course on My NCBI (pt. 2)

• Select Filters from the My NCBI menu.

• Select PubMed from the database list.

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A Quick Course on My NCBI (pt. 3)

• This will bring you to Filters Quick Pick list– Click the “Search” tab. – Enter your institution’s name in the search

box. Click “Go”. – Select your library from the list of

Matching Filters.

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A Quick Course on My NCBI (pt. 4)

• Make sure both checkboxes under Selections are checked. – Library icons will display on holdings.– Holdings will be grouped as a Filter tab in

the search result.

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A Quick Course on My NCBI (pt. 5)

• View Filter selections under “My Selections”

• My NCBI filters will only work when user is signed into My NCBI.

• From the Quick Pick list, you can click “Browse” to select from a list of libraries that participate in LinkOut.

• Options set using special URLs will be applied while user is in My NCBI.

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Medline Automated Alerting Services

• NCBI’s MyNCBI – http://www.pubmed.gov/

• PubCrawler – an Update Alerting Service for PubMed and GenBank – looks for

matches to text http://pubcrawler.gen.tcd.ie/

• BioMail - http://biomail.sourceforge.net/biomail/

• j.a.d.e (Journal Abstract Deliver Electronically) – searches Medline once a week. - http://www.biodigital.org/jade/

• Amedeo, The Medical Literature Guide – – (free alert service that searches the MEDLINE database weekly - http://www.amedeo.com/

• PubMed DailyUpdates: Breaking PubMed entries for the Drug Discovery Community –

– http://www.leaddiscovery.co.uk/PubMed-dailyupdates.html

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A Quick Course on My NCBI (demo)

• http://www.pubmed.gov or http://www.ncbi.nlm.nih.gov/

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My Saved Searches Malaria

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My Saved Searches Monthly

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Go To: Filters

Filters (new)

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PubMed Commonly Requested Filters

Only if you want to restrict your search result to ONLY those citations with Free Full Text or Full Text

Remember some citations have only a Title or Title/Abstract

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My NCBI Filter: Search

Type hinari and Click Go

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Saving Search: fever

Choose “Yes”

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Setting Up Email Update

Click OK …..

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Now with fever and malaria

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Setting up icon in Email Update

Format: Abstract as HTML

The HINARI icon will be included in the updated Emailed search results.

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Setting up URL in Email Update

Format: Abstract as Text

The HINARI URL will be included in the updated Emailed search results.

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Refreshing Saved Searches: What’s New

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Malaria what’s new hinari (94)

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Search fever – Abstract as Text

Email Update: Example Result Email

Search malaria: Abstract as HTML

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Make sure you login into HINARI

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Go to HINARI Full Text (Ex 1: PNAS)

Some Publisher are good at identifier countries: Vietnam

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Go to HINARI Full Text (Ex 2: Lancet)

Full Text From HINARI is NOT Available this Way.

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So How do you get Full Text then?http://www.healthinternetwork.org/ Website

Notice the URL: https://hin-sweb.who.int/ ….