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MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development through cell division in Arabidopsis thaliana Jinwoo Shin* , Goowon Jeong, Jong-Yoon Park, Hoyeun Kim and Ilha Lee* Laboratory of Plant Developmental Genetics, School of Biological Sciences, Plant Genomics and Breeding Institute, Seoul National University, Seoul 08826, Korea Received 16 August 2017; revised 24 November 2017; accepted 14 December 2017; published online 21 January 2018 . *For correspondence (e-mails [email protected] and [email protected]). SUMMARY Kinetochore, a protein super-complex on the centromere of chromosomes, mediates chromosome segrega- tion during cell division by providing attachment sites for spindle microtubules. The NDC80 complex, com- posed of four proteins, NDC80, NUF2, SPC24 and SPC25, is localized at the outer kinetochore and connects spindle fibers to the kinetochore. Although it is conserved across species, functional studies of this complex are rare in Arabidopsis. Here, we characterize a recessive mutant, meristem unstructured-1 (mun-1), exhibit- ing an abnormal phenotype with unstructured shoot apical meristem caused by ectopic expression of the WUSCHEL gene in unexpected tissues. mun-1 is a weak allele because of the insertion of T-DNA in the pro- moter region of the SPC24 homolog. The mutant exhibits stunted growth, embryo arrest, DNA aneuploidy, and defects in chromosome segregation with a low cell division rate. Null mutants of MUN from TALEN and CRISPR/Cas9-mediated mutagenesis showed zygotic embryonic lethality similar to nuf2-1; however, the null mutations were fully transmissible via pollen and ovules. Interactions among the components of the NDC80 complex were confirmed in a yeast two-hybrid assay and in planta co-immunoprecipitation. MUN is co-localized at the centromere with HTR12/CENH3, which is a centromere-specific histone variant, but MUN is not required to recruit HTR12/CENH3 to the kinetochore. Our results support that MUN is a functional homolog of SPC24 in Arabidopsis, which is required for proper cell division. In addition, we report the ectopic generations of stem cell niches by the malfunction of kinetochore components. Keywords: SPC24, NDC80 complex, kinetochore, centromere, cell division, Arabidopsis thaliana. INTRODUCTION Apical meristems define plant architecture by providing new cells with proper cell division; thus, mutants with defects in cell division have abnormal meristem structures and unusual morphology (Jager et al., 2005; Nieuwland et al., 2009). Proper condensation and segregation of chro- mosomes are critical for successful cell division and main- tenance of genome stability. Accordingly, the kinetochore, a protein super-complex providing an attachment site for spindle fibers in the centromere of chromosomes, has important roles in cell division. It plays critical roles in the cohesion of sister chromatids, proper segregation of chro- mosomes, and management of the spindle assembly checkpoint (Janke et al., 2001). Up to 100 proteins were estimated to constitute the whole kinetochore complex in vertebrates (Samejima et al., 2015). Many components of the kinetochore are evolutionarily well-conserved from yeast to humans (Meraldi et al., 2006; Lermontova et al., 2014). They are mainly separated into two groups, inner and outer kinetochores (Chan et al., 2005). Among the components of the outer kinetochore com- plex, the four proteins in the NDC80 complex, including NDC80 [nuclear division cycle 80, also known as Hec1 (highly expressed in cancer1) in humans], NUF2 (nuclear filament-containing protein 2), SPC24 (spindle pole body component 24) and SPC25, play critical roles in connecting spindle fibers to chromosomes. These proteins are assem- bled into a 170190-kDa complex in diverse species (Kline- Smith et al., 2005; Ciferri et al., 2007). In vertebrates, the C-terminal ends of the NUF2-NDC80 heterodimer associate with the N-terminal coiled-coil domains of the SPC24- SPC25 heterodimer (Ciferri et al., 2005; Wei et al., 2005). All four subunits contain a long coiled-coil domain, provid- ing a long rod-shaped structure, and a globular domain. Each of the N-terminal globular heads of the NDC80-NUF2 © 2018 The Authors The Plant Journal © 2018 John Wiley & Sons Ltd 977 The Plant Journal (2018) 93, 977–991 doi: 10.1111/tpj.13823

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Page 1: MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 …ilhalee.snu.ac.kr/pdf/MUN.pdfMUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development

MUN (MERISTEM UNSTRUCTURED), encoding a SPC24homolog of NDC80 kinetochore complex, affectsdevelopment through cell division in Arabidopsis thaliana

Jinwoo Shin* , Goowon Jeong, Jong-Yoon Park, Hoyeun Kim and Ilha Lee*

Laboratory of Plant Developmental Genetics, School of Biological Sciences, Plant Genomics and Breeding Institute, Seoul

National University, Seoul 08826, Korea

Received 16 August 2017; revised 24 November 2017; accepted 14 December 2017; published online 21 January 2018 .

*For correspondence (e-mails [email protected] and [email protected]).

SUMMARY

Kinetochore, a protein super-complex on the centromere of chromosomes, mediates chromosome segrega-

tion during cell division by providing attachment sites for spindle microtubules. The NDC80 complex, com-

posed of four proteins, NDC80, NUF2, SPC24 and SPC25, is localized at the outer kinetochore and connects

spindle fibers to the kinetochore. Although it is conserved across species, functional studies of this complex

are rare in Arabidopsis. Here, we characterize a recessive mutant, meristem unstructured-1 (mun-1), exhibit-

ing an abnormal phenotype with unstructured shoot apical meristem caused by ectopic expression of the

WUSCHEL gene in unexpected tissues. mun-1 is a weak allele because of the insertion of T-DNA in the pro-

moter region of the SPC24 homolog. The mutant exhibits stunted growth, embryo arrest, DNA aneuploidy,

and defects in chromosome segregation with a low cell division rate. Null mutants of MUN from TALEN

and CRISPR/Cas9-mediated mutagenesis showed zygotic embryonic lethality similar to nuf2-1; however,

the null mutations were fully transmissible via pollen and ovules. Interactions among the components of

the NDC80 complex were confirmed in a yeast two-hybrid assay and in planta co-immunoprecipitation.

MUN is co-localized at the centromere with HTR12/CENH3, which is a centromere-specific histone variant,

but MUN is not required to recruit HTR12/CENH3 to the kinetochore. Our results support that MUN is a

functional homolog of SPC24 in Arabidopsis, which is required for proper cell division. In addition, we report

the ectopic generations of stem cell niches by the malfunction of kinetochore components.

Keywords: SPC24, NDC80 complex, kinetochore, centromere, cell division, Arabidopsis thaliana.

INTRODUCTION

Apical meristems define plant architecture by providing

new cells with proper cell division; thus, mutants with

defects in cell division have abnormal meristem structures

and unusual morphology (Jager et al., 2005; Nieuwland

et al., 2009). Proper condensation and segregation of chro-

mosomes are critical for successful cell division and main-

tenance of genome stability. Accordingly, the kinetochore,

a protein super-complex providing an attachment site for

spindle fibers in the centromere of chromosomes, has

important roles in cell division. It plays critical roles in the

cohesion of sister chromatids, proper segregation of chro-

mosomes, and management of the spindle assembly

checkpoint (Janke et al., 2001). Up to 100 proteins were

estimated to constitute the whole kinetochore complex in

vertebrates (Samejima et al., 2015). Many components of

the kinetochore are evolutionarily well-conserved from

yeast to humans (Meraldi et al., 2006; Lermontova et al.,

2014). They are mainly separated into two groups, inner

and outer kinetochores (Chan et al., 2005).

Among the components of the outer kinetochore com-

plex, the four proteins in the NDC80 complex, including

NDC80 [nuclear division cycle 80, also known as Hec1

(highly expressed in cancer1) in humans], NUF2 (nuclear

filament-containing protein 2), SPC24 (spindle pole body

component 24) and SPC25, play critical roles in connecting

spindle fibers to chromosomes. These proteins are assem-

bled into a 170–190-kDa complex in diverse species (Kline-

Smith et al., 2005; Ciferri et al., 2007). In vertebrates, the

C-terminal ends of the NUF2-NDC80 heterodimer associate

with the N-terminal coiled-coil domains of the SPC24-

SPC25 heterodimer (Ciferri et al., 2005; Wei et al., 2005).

All four subunits contain a long coiled-coil domain, provid-

ing a long rod-shaped structure, and a globular domain.

Each of the N-terminal globular heads of the NDC80-NUF2

© 2018 The AuthorsThe Plant Journal © 2018 John Wiley & Sons Ltd

977

The Plant Journal (2018) 93, 977–991 doi: 10.1111/tpj.13823

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heterodimer contains CH (calponin-homology) domains

that directly bind to the acidic tails of the a- and b-tubulindimers in microtubules (Ciferri et al., 2008). In addition,

globular dimeric heads, containing the RWD (RING finger,

WD repeat, DEAD-like helicases) domain of the SPC24-

SPC25 dimer, bind to the inner kinetochore components,

the KNL1-Mis12 complex (Petrovic et al., 2014; Rago et al.,

2015). Therefore, the NDC80 complex serves as a central

‘hub’ connecting the kinetochore complexes, which pro-

vides the ‘bridges’ between the inner kinetochore com-

plexes and the microtubule spindles (Samejima et al.,

2015).

Loss-of-function studies of the components of the

NDC80 complex have been performed in several organ-

isms; however, the phenotypic characterization of the

mutants in the NDC80 complex has been limited because

of the severe defects in the growth and development of

the mutants. Knockdown of HEC1, the human NDC80 in

T24 bladder carcinoma cells, and NUF2 in HeLa cells

caused abnormal chromatid segregation (Chen et al., 1997;

DeLuca et al., 2002). In yeast, all the mutants of the NDC80

complex exhibited abnormal segregation of chromosomes

and defects in cell division (Wigge et al., 1998; Janke et al.,

2001; Wigge and Kilmartin, 2001). Similar phenotypes of

loss-of-function in the components of the NDC80 complex

were observed in Xenopus tissue culture cells, chicken

DT40 cells and mouse oocytes (Hori et al., 2003; McCle-

land, 2003; Sun et al., 2010). However, none of these stud-

ies described mutant phenotypes at the organismal level.

In plants, several protein components of the kinetochore

have been reported (Lermontova et al., 2015). CENH3

(CENP-A in humans, HTR12 in Arabidopsis), a centromere-

specific histone H3 variant, acts as a foundation protein for

recruiting additional kinetochore proteins (Talbert et al.,

2002; Zhong et al., 2002; Lermontova et al., 2006, 2011).

CENP-C functions as a structural platform for kinetochore

assembly by interacting with CENH3 (Ogura et al., 2004).

As an upstream component of CENH3 deposition at cen-

tromeres, KNL-2/Mis18BP1 recruits and loads the CENH3

into the kinetochore (Lermontova et al., 2013; Sandmann

et al., 2017). Among the components of the NDC80 com-

plex, only NDC80 was characterized in maize (Du and

Dawe, 2007). However, the study was limited to the local-

ization analysis at the cellular level, and phenotypic charac-

terization of mutations in the components of the NDC80

complex has not been reported.

Here, we characterize a recessive T-DNA insertion

mutant, mun-1 (meristem unstructured-1), which exhibits

unstructured shoot apical meristem (SAM) and ectopic

development of the SAM caused by ectopic expression of

meristem identity genes. The gene, MERISTEM UNSTRUC-

TURED (MUN), has been annotated as the ‘unknown gene’;

however, our analyses strongly suggest that MUN is an

Arabidopsis ortholog of SPC24, a member of the NDC80

complex. MUN is involved in proper chromosome segre-

gation and normal cell division as a component of the

kinetochore complex at the centromere. Besides its role in

cell division, we observed interesting phenotypes in mun-

1, a weak knockdown allele of MUN/AtSPC24. For example,

it generates ectopic stem cell niches from somatic cells

without any hormone treatment. Together, we propose

that a kinetochore hub-protein, MUN, is required for chro-

mosome segregation to ensure proper cell division and the

maintenance of plant architecture.

RESULTS

mun-1, a weak allele, shows unstructured SAM, growth

retardation, defects in embryo development, and

spontaneous de novo shoot organogenesis (DNSO)

From the pools of activation tagging mutants generated in

the lab (Hyun et al., 2008), a mutant was isolated. The

mutant showed unstructured SAM morphology, as well as

severe growth retardation; thus, we named it meristem

unstructured-1 (mun-1; Figure 1a and b). The mutant, mun-

1, was recessive because it segregated into 678 normal

versus 89 mutants in the F2 population (Table S1), which

indicates that it was not a gain-of-function mutant. mun-1

produced small and shrunken leaves with rough surface

margins (Figure 1a). In addition, it failed to produce regular

dome-shaped SAM structure, and occasionally produced

ectopic protrusions of cell masses at random locations

(Figure 1b-iii versus iv). Thus, it often produced multiple

shoots with irregular phyllotaxy before flowering (red

arrows in Figure 1a-vii, viii, 1b-v, vi). Occasionally, stomata

were observed near the ectopic protrusions, which indi-

cated that the ectopic protrusions may have developed

from differentiated tissues, such as fully developed leaf

epidermis (Figure 1b-vii, viii, yellow arrows).

Eventually the homozygotes of mun-1 produced flowers,

but failed to produce fertile seeds. In contrast, in the

heterozygotes, mun-1/+, no discernible phenotypes were

observed in comparison with Col-0 (WT). We observed

developing seeds in the siliques of mun-1/+ after clearing.

Less than a quarter of the progenies showed defects in

embryo development (approximately 20–30 seeds among

240 seeds obtained from six siliques exhibited defects in

the embryo). Some of them produced only a single cotyle-

don (Figure 1b-ii). Some embryos exhibited reduced cell

division, and embryogenesis was arrested as early as the

globular stage as seen in Figure 1c-iv, whereas others

developed into later stages, such as the heart and torpedo

stages (Figure 1c-v). Such embryos arrested at variable

developmental stages and appeared to produce aborted

seeds in siliques of mun-1/+ (Figure 7a). In addition, some

seeds developed from relatively normal or mildly defected

embryos (Figure 1c-vi) and produced mun-1 homozygote

plants after germination.

© 2018 The AuthorsThe Plant Journal © 2018 John Wiley & Sons Ltd, The Plant Journal, (2018), 93, 977–991

978 Jinwoo Shin et al.

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(a)

i ii

iii iv

iv

v vi

vii viii

i ii

iii

v vi

vii

i ii iii

iv v vi

viii

(d) (e)

(b)

(c)

Figure 1. Morphological phenotypes of mun-1, a weak allele of AT3G08880.

(a) Morphology of mun-1 compared with Col-0 (WT). (i, iii, v) WT, and (ii, iv, vi–viii) mun-1. (i, ii) 9 DAG (days after germination), (iii–iv) 15 DAG, (v–viii) 25 DAG.

Red arrows indicate multiple shoots generated before flowering.

(b) Images of scanning electron microscope (SEM) for shoot apical meristem (SAM) of 5 DAG seedlings. (i, iii) WT, (ii, iv–viii) mun-1. (iv) and (vi) are enlarged

images of insets in (ii) and (v), respectively. (v, vi) show multiple SAMs generated at random locations (red arrows). (vii, viii) show ectopic protrusion of stem

cell niche from differentiated leaf tissues with stomata (yellow arrows). (iii) and (viii) are enlarged images of insets in (i) and (vii), respectively. Numbers indicate

the orders of leaf generation in (iii), c indicates cotyledon.

(c) Defects of embryo development in mun-1. (i–iii) WT, (iv–vi) mun-1. (i, iv) globular stage, (ii, v) heart stage, (iii, vi) late torpedo stage.

(d) Location of T-DNA insertion in the mun-1 (blue box). Green arrow indicates the site of deletion in the null allele of mun-2t. Yellow box = exon; blue line = in-

tron; red line = UTR; black line = intergenic region; orange box below = genomic DNA fragment used for complementation of mun-1.

(e) Expression of MUN in WT and mun-1 analyzed by quantitative real-time polymerase chain reaction (RT-qPCR). The transcript level in mun-1 is approximately

25% of the WT level, indicating that mun-1 is a weak allele. Means � SD from three replicates are presented. Student’s t-test (**P < 0.002).

© 2018 The AuthorsThe Plant Journal © 2018 John Wiley & Sons Ltd, The Plant Journal, (2018), 93, 977–991

Kinetochore protein SPC24 homolog in Arabidopsis 979

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We cloned the MUN gene by thermal asymmetric inter-

laced polymerase chain reaction (TAIL-PCR), and con-

firmed it by molecular marker-assisted mapping

(Figures 1d and S1). T-DNA was inserted at the 50-UTR

region of the AT3G08880 gene in mun-1, which reduced

gene expression to 25% of that of the WT (Figure 1d and

e). Phenotypes of mun-1 were complemented by the intro-

duction of a genomic fragment containing the 2-kb pro-

moter and gene sequence of AT3G08880 (Figures 1d and

Figure S1d). In contrast, although the adjacent gene,

AT3G08870, showed 2.5 times higher expression in mun-1

(Figure S1c), none of 35S::AT3G08870 transgenic lines

among 35 T1 plants showed an abnormal phenotype like

mun-1.

The analysis of seeds produced in the siliques of mun-1/

+ plants showed that approximately 11.7%, less than a

quarter, exhibited a seed abortion phenotype, and 11.6%

of germinated progenies had abnormal plant morphology

(Figure 7a; Tables 1 and Table S1). Such results indicated

that mun-1 is a weak allele showing incomplete pene-

trance, which explains the relatively random arrest at vari-

ous stages of embryonic development.

In mun-1, ectopic protrusions were developed into

SAMs producing a few leaves (Figure 1a-vii, viii, 1b-v, vi,

red arrows). Undifferentiated cell colonies randomly pro-

truded from normally differentiated tissues in mun-1. Thus,

it appears that DNSO occurred in mun-1. It is known that

ectopic expression of WUSCHEL (WUS), a well-known mar-

ker for stem cell niche, is sufficient to lead DNSO (Gallois

et al., 2004; Duclercq et al., 2011; Zhang et al., 2017), there-

fore we checked the expression levels of WUS in mun-1

plants (Figure 2d). We found that WUS was overexpressed

in both shoot apices and whole seedlings of mun-1. Inter-

estingly, WUS was strongly overexpressed more often in

the whole seedlings than in shoot apices, suggesting that

ectopic WUS expression occurred outside of the normal

SAM area as well. Consistently, the GUS-stained signals of

pWUS::WUS-GUS in the mun-1 were detected in various

tissues, such as the shoot apex, leaf epidermis and roots

(Figure 2b and c, red arrows), indicating that ectopic stem

cell niches were established.

mun-1 shows defects in cell division, aneuploidy and

chromosome segregation

Roots of mun-1 grew much slowly than those of the WT

(Figure 3a and b). In addition, mun-1 produced shorter

roots because both the meristematic zone and elongation

zone were shorter compared with that of the WT (Fig-

ure 3d). The cell proliferation assay using 5-ethynyl-20-deoxyuridine (Edu) to detect actively dividing cells in the

S-phase in the meristematic zone showed that there were

considerably fewer Edu-stained cells in the mutants than in

the WT, indicating lower RAM activity in mun-1 (Figure 3d

and f).

We also compared the number of root cells undergoing

M phase in the meristematic zone (Figure 3c, red arrows,

and e) in the mutant and WT, which was countable using

pUBQ14::GFP-TUA6, a marker line detecting spindle fiber

and phragmoplast formation (Oh et al., 2010). The mun-1

line had substantially fewer cells in the M phase compared

with that of the WT. We then compared cell sizes between

mun-1 and the WT in leaf epidermis and mesophyll cells

(Figure 3g). Although the overall leaf size was quite dissim-

ilar, the sizes of cells from the leaf epidermis and meso-

phyll were almost the same. Taken together, our results

demonstrated that the cell division rate of mun-1 was

much lower than that of the WT overall.

Flow cytometric analysis measuring DNA contents after

propidium iodide (PI) staining revealed a higher frequency

of cells with DNA aneuploidy in mun-1 than in the WT (Fig-

ure 3h). No significant shift in the peak was observed in

the histogram data, but the width of the peak differed in

mun-1 compared with that of WT. The peaks of mun-1

were lower and broader at all peak points in DNA his-

tograms, suggesting the presence of nuclei with abnormal

quantities of DNA. Aneuploidy cells were indirectly quanti-

fied by measuring the ‘% coefficient of variation (CV)’ of

each peak (Figure 3h-ii). The value of each peak was

10–20% higher in mun-1 than the WT, indicating that mun-

1 had more aneuploid cells than the WT. However,

endoreduplication status of leaf cells was relatively normal

in mun-1 (Figure 3i). We also directly observed defects of

chromosome segregation in mun-1, such as micronuclei

formation, and chromosome lagging during anaphase (Fig-

ure 3j-ii to iv). These data suggest that MUN affects the

process of cell division through the management of proper

chromosome segregation.

MUN encodes a SPC24 homolog, a member of the NDC80

kinetochore complex

Although MUN, AT3G08880, has been annotated as an ‘un-

known protein’ in the TAIR10 database from The Arabidop-

sis Information Resource (https://www.arabidopsis.org),

comparative genomic analysis using the Phytozome

(v11.0) database (https://phytozome.jgi.doe.gov/pz/portal.

Table 1 Phenotypic segregation of seeds from the siliques ofmun-1/+, mun-2t/+ and nuf2-1/+

NormalSeedabortion

Ovuleabortion Total

WT 403 (97.8%) 3 (0.7%) 6 (1.5%) 412 (100.0%)mun-1/+ 324 (88.3%) 43 (11.7%) 0 (0.0%) 367 (100.0%)mun-2t/+ 343 (73.6%) 123 (26.4%) 0 (0.0%) 466 (100.0%)nuf2-1/+ 233 (69.3%) 84 (25.0%) 19 (5.7%) 336 (100.0%)

The ratio of seed abortion (dried and dead seeds after fertilization)and ovule abortion (aborted ovule before fertilization) in mun-1/+,mun-2t/+ and nuf2-1/+.Eight siliques per each plant were examined.

© 2018 The AuthorsThe Plant Journal © 2018 John Wiley & Sons Ltd, The Plant Journal, (2018), 93, 977–991

980 Jinwoo Shin et al.

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html) indicated that it is homozygous to SPC24, a member

of the NDC80 kinetochore complex in several species (Fig-

ure S2a). Protein homologs of AT3G08880 in Boechera

stricta, Capsella rubella and Capsella grandiflora were pre-

dicted to be homologs of the SPC24 subunit of the NDC80

(Pfam family, PF08286) complex. All of these had approxi-

mately 80% similarity with MUN; thus, we inferred MUN to

be a strong candidate for a SPC24 ortholog.

Predicted MUN protein has a coiled-coil region and a

globular domain at the end, which are typical structural

features found in all four components of the NDC80 kineto-

chore complex (Figures 4a and S2b). Using the C-terminal

region of MUN (129-201, 73aa) as a query for RAPTOR-X

software, we obtained a hypothetical 3D structure homolo-

gous to the chicken (Gallus gallus) Spc24 structure (3vza:C;

Figure S3b; K€allberg et al., 2012; Nishino et al., 2013). The

predicted Rank#1 template was the Spc24 chain located in

the Spc24_Spc25_CENP-T complex from chicken. All of the

SPC24s have a conserved globular domain at the C-termi-

nus, which is known as the ‘RWD (RING finger, WD repeat,

DEAD-like helicases)’ domain consisting of two a-helicesand a b-pleated sheet in between (Schmitzberger and Har-

rison, 2012; Petrovic et al., 2014, 2016). MUN also has a

RWD domain in the predicted 3D structure (Figures 4b and

Figure S2b). Multiple alignments using amino-acid

sequences of C-terminal regions in SPC24s from diverse

species revealed that the RWD domain is also conserved in

MUN/AtSPC24 (Figure 4b and c). Despite the differences in

overall amino acid sequences, the polarity of the C-termi-

nus has been relatively well conserved (Figure S2d). In par-

ticular, tryptophan residue in the last a-helix of SPC24 is

highly conserved in various organisms (Figures 4b, and

Figure S2b and d). In chickens, the W188 residue forms

hydrophobic interactions with V191 of GgSPC24 and L149

of GgSPC25, and is critical for the a-helix formation (Fig-

ure S2c). Therefore, W188 is a key residue for proper fold-

ing of GgSpc24 and heterodimerization with SPC25. This

critical residue is also conserved in MUN (W195 in Ara-

bidopsis thaliana), supporting the view that MUN has

structural similarity to GgSPC24. Taken together, the in sil-

ico analyses strongly suggested that MUN is an ortholog

of SPC24, a member of the NDC80 kinetochore complex.

MUN is predominantly expressed in actively dividing

tissues and the protein is co-localized at the centromere

with HTR12/CENH3

To analyze the expression pattern of MUN, we generated

pMUN::MUN-GUS transgenic lines containing 3.4-kb

genomic sequences of MUN (Figure 5a). The histochemi-

cal GUS staining revealed that MUN-GUS is highly

expressed in actively dividing tissues, such as SAM, RAM,

vasculature and newly emerging leaves. After flowering,

GUS staining was detected in the inflorescence shoots,

indicating the expression of MUN is associated with cell

division. Interestingly, in plants containing pMUN::MUN-

eGFP that rescued the morphological phenotype of mun-

1, MUN-eGFP is expressed not only in vegetative tissues

(roots, leaf epidermis), but also in reproductive tissues

(petals, pollen, ovules; Figure 5b). GFP spots were located

in the nuclei. In general, up to 10 spots per cell in sporo-

phytic tissues (roots, leaf epidermis, petals, and integu-

ments of ovules) and less than five spots per cell from

gametophytic tissues, such as sperm cells in mature pol-

len, were observed. In some cells of RAM, MUN-eGFP

was occasionally detected in the metaphase plate (Fig-

ure 5b, white arrow) and appeared as a pair of dots,

(a) (b)

(c) (d)

Figure 2. Ectopic expression of WUS in mun-1.

(a–c) GUS staining results using pWUS::WUS-GUS

in the WT (a) and mun-1 (b, c). 7 days after germi-

nation (DAG) seedlings. GUS stain is marked by red

arrows. Inset in (a) is an enlarged shoot apical

meristem (SAM) image of WT. (c) Root of mun-1.

White bar = 100 lm.

(d) Expression of WUS by real-time polymerase

chain reaction (RT-PCR) in SAM and whole seed-

lings of WT and mun-1.

© 2018 The AuthorsThe Plant Journal © 2018 John Wiley & Sons Ltd, The Plant Journal, (2018), 93, 977–991

Kinetochore protein SPC24 homolog in Arabidopsis 981

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(a) (d)

(b)

(c)

(e)

(g) i ii iii

v vi

iv

vii

(i)

(h)

(j) i ii iii iv

(f)

i ii

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982 Jinwoo Shin et al.

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which is very likely to be a pair of sister centromeres

formed at the G2 phase (Figure 5b, yellow arrow). Such a

localization pattern of MUN-eGFP suggests that MUN is a

structural protein in the chromosomes. In particular, the

MUN localization pattern was very similar to that of

HTR12/CENH3-GFP, a main component of the inner kine-

tochore complex (Ingouff et al., 2007; De Storme et al.,

2016). Therefore, we determined if MUN and CENH3 were

co-localized at the kinetochore complex using lines con-

taining pMUN::MUN-mRFP1 and HTR12/CENH3-GFP trans-

genes. As expected, the RFP and GFP signals were largely

overlapping, indicating that the two proteins were co-loca-

lized in the same region (Figure 5c).

We then determined if the localization of HTR12/CENH3-

GFP was affected by the mun-1 mutation (Figures 3j-ii and

5d). Both the signal strength and spotting patterns of

HTR12/CENH3-GFP in mun-1 did not differ from those

detected in the WT, indicating that MUN is not necessary

for the recruitment of HTR12/CENH3 to the centromere.

Thus, the results suggested that the assembly of MUN into

the kinetochore occurred independently of HTR12/CENH3

loading.

MUN interacts with components of the NDC80 complex

We checked if the components of the NDC80 complex

localized at the same region. The subcellular localization

Figure 4. MUN is evolutionarily conserved SPC24 ortholog in Arabidopsis.

(a) MUN has a coiled-coil domain predicted by using ‘Coiled-Coils prediction’ software powered by PBIL (Pole Bioinformatique Lyonnais).

(b) Multiple alignment of amino-acid sequences of C-terminal regions of SPC24s from 18 species was obtained using CLC Main Workbench. The cartoon at the

bottom shows secondary structures generated by RaptorX software; pink ribbon, a-helix; and yellow arrow, b-sheet. Well-conserved tryptophan residue (W195

in Arabidopsis) is shown.

(c) A phylogenetic tree of SPC24s from 18 species rooted by outgroup (yeast CTF19 and human KNL1) is shown. Evolutionary analyses were conducted in

MEGA7 software. Numbers indicate bootstrap values based on 1000 trials. [Colour figure can be viewed at wileyonlinelibrary.com]

Figure 3. mun-1 shows reduced cell division rate, aneuploidy and defects in chromosome segregation.

(a) Roots of WT and mun-1 at 6 days after germination (DAG).

(b) Time course measurements of root lengths in the WT and mun-1. Means � SD are presented, n = 12.

(c) Confocal laser-scanning microscopy (CLSM) images of M-phase cells (marked by red arrows) in root meristematic zone of WT and mun-1 observed in

pUBQ14::GFP-TUA6.

(d) Maximum intensity projection images of CLSM after Edu (5-ethynyl-20-deoxyuridine) staining. Green spots are nuclei stained with Alexa Fluor� 488-conju-

gated Edu in S-phase, nuclei were stained with DAPI (blue signals). 5 DAG seedlings. Yellow arrows mark elongation zone and blue arrows mark differentiation

zone.

(e) Number of M phase cells in meristematic zone. Student’s t-test, n = 8 (***P < 0.001).

(f) Number of S phase cells in meristematic zone. Student’s t-test, n = 8 (***P < 0.001).

(g) Size comparison of epidermal and mesophyll cells between the WT and mun-1. (i) Photo of second true leaves from 12 DAG plants, WT (left) and mun-1

(right). Black bar = 1 mm. (ii, iii) DIC (differential interference contrast) images of mesophyll cells from WT and mun-1. White bar = 50 lm. (iv) Number of meso-

phyll cells. Student’s t-test, n = 8. (v, vi) Scanning electron microscopy (SEM) images of epidermal cells of rosette leaves from the WT and mun-1. The red lines

are drawn to highlight single cell. White bar = 20 lm. (vii) Number of epidermal cells. Student’s t-test, n = 8.

(h) mun-1 shows DNA aneuploidy. (i) Flow cytometry analysis. Rosette leaves of 7 DAG seedlings were used and 10 000 nuclei were counted for each sample.

(ii) % coefficient of variation (CV) chart of 2C, 4C, 8C, 16C and 32C peaks in WT and mun-1, which were calculated from the analysis of six DNA histograms.

Two-tailed t-test was used (ns P > 0.12, *P < 0.033, **P < 0.002, ***P < 0.001).

(i) Analysis of nuclear DNA ploidy by flow cytometry shows endoreduplication status of WT and mun-1.

(j) mun-1 shows defects in chromosome segregation. (i) Chromosome segregation of WT. (ii) Micronuclei formation of mun-1. (i, ii) Green spots are HTR12/

CENH3-GFP, DAPI-stained chromosomes are shown in blue. Maximum intensity projection images. (iii, iv) Lagging chromosomes of mun-1. DAPI-stained chro-

mosomes are shown in blue. Among 16 anaphases of the WT and 20 anaphases of mun-1, 6.3% and 35% showed lagging chromosomes, respectively.

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Kinetochore protein SPC24 homolog in Arabidopsis 983

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Figure 5. Expression of MUN and cellular localization of the protein.

(a) GUS staining of pMUN::MUN-GUS.

(b) Confocal laser-scanning microscopy (CLSM) images of pMUN::MUN-GFP. White arrow denotes the chromosome appeared at the metaphase plate during

mitosis. Yellow arrow denotes the duplicated sister centromere at G2 phase.

(c) Co-localization of MUN and HTR12 at centromeres in root cells. Root cells from pMUN::MUN-mRFP1 pHTR12::HTR12-GFP double transgenic plants were

examined by CLSM.

(d) Localization of HTR12/CENH3-GFP in root of WT and mun-1. Green spots are HTR12/CENH3-GFP, DAPI-stained chromosomes are shown in blue. Maximum

intensity projection images.

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984 Jinwoo Shin et al.

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patterns of eGFP proteins in the root meristems of

pNDC80::NDC80-eGFP, pNUF2::NUF2-eGFP and pSPC25::

SPC25-eGFP transgenic lines confirmed that they had simi-

lar patterns with those of MUN-eGFP and HTR12/CENH3-

GFP, specifically as dots in the nuclei throughout the cell

cycle (Figure 6a).

To confirm that MUN is a component of the NDC80 com-

plex in Arabidopsis, we evaluated the protein–protein inter-

actions between MUN and the other components of the

NDC80 complex using the yeast two-hybrid (Y2H) assay

and in planta co-immunoprecipitation (Co-IP) analysis (Fig-

ure 6b and c). From the Y2H assay, we found that MUN

interacts with SPC25, and SPC25 interacts with NDC80 and

NUF2 when SPC25 is used as a prey (SPC25 fused with

activation domain). Additionally, NDC80, NUF2 and SPC25

underwent homodimerization in the Y2H assay. To confirm

these interactions in planta, we performed Co-IP analysis

among the components of the NDC80 complex in Ara-

bidopsis seedlings. Each construct, namely, pNDC80::

NDC80-eGFP, pNUF2::NUF2-eGFP and pSPC25::SPC25-

Figure 6. Subcellular localizations and interactions of the components of the NDC80 complex with MUN.

(a) Subcellular localization patterns of eGFP in the roots of pNDC80::NDC80-eGFP, pNUF2::NUF2-eGFP and pSPC25::SPC25-eGFP transgenic plants.

(b) Yeast two-hybrid (Y2H) assays among the components of the NDC80 complex of Arabidopsis. -LW, plates lacking Leu, Trp. -LWHA, plates lacking Leu, Trp,

His and Ade.

(c) Co-immunoprecipitation (Co-IP) analysis among the components of the NDC80 complex in seedlings of Arabidopsis. IP, immunoprecipitation.

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Kinetochore protein SPC24 homolog in Arabidopsis 985

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eGFP, was transformed into both the WT and pMUN::

MUN-FLAG plants to generate double transgenic lines for

Co-IP analysis. Proteins from each sample were immuno-

precipitated by beads linked to anti-GFP antibody, and

immunoblotted using anti-GFP or anti-FLAG antibodies.

The Co-IP analysis showed that MUN/SPC24 immunopre-

cipitated with NDC80, NUF2 and SPC25 in Arabidopsis.

Thus, we inferred that even though MUN neither interacts

with NDC80 nor with NUF2 in the Y2H assay, a NDC80

complex is formed in planta through SPC25 as a core

molecule.

Consistently, the in silico analysis of the expression of

each component of the NDC80 complex from 113 samples

of RNA-Seq expression in Araport DB (https://www.a

raport.org/rna-seq-read-datasets-used-araport11; Figure S4)

showed that the expression patterns and levels of NUF2,

SPC25 and SPC24 were largely correlated. Taken together,

our results strongly support the supposition that MUN is

an ortholog of SPC24, a component of the NDC80 complex

in Arabidopsis.

Null mutation in MUN causes zygotic embryonic lethal

phenotype

Because 50-UTR is disrupted by the insertion of T-DNA,

mun-1 is a weak allele producing reduced transcript levels

(Figure 1). Thus, we generated null mutants via targeted

gene knockout techniques, TALEN and CRISPR/Cas9, and

labeled as mun-2t (t stands for TALEN) and mun-3c (c

stands for CRISPR/Cas9), respectively (Figure S3). Because

mun-2t and mun-3c showed similar phenotypes, we

describe mun-2t as a representative null allele, hereafter. In

the null mutant mun-2t, a premature stop codon was intro-

duced because of a frameshift mutation caused by a 7-bp

deletion in the 1st exon (Figure S3b). Seeds with the mun-

2t homozygous genotype were not possible to obtain, and

the seed abortion ratio observed in the siliques of

heterozygotes, mun-2t/+, was approximately 26.4% (n =

466), suggesting that the null allele of MUN causes zygotic

lethality (Table 1). Some embryos developed in the sili-

ques showed irregular cell division patterns after formation

of the apical cell (embryo proper), which resulted in

embryo arrest at a very early stage (Figure 7c). The

arrested stage of embryos in the mun-2t mutant generally

occurred earlier than that in mun-1 (Figures 1c, and 7a and

c). The seed abortion ratio in mun-1/+ was approximately

half of 25%, indicating incomplete penetrance. Abnormal

embryos at the heart or torpedo stage were frequently

observed in the weak allele, mun-1; however, almost all

embryos in the null allele, mun-2t, were arrested before

the globular stage. It is noteworthy that the cenh3 mutant

in Arabidopsis also showed embryo arrest at the globular

stage (Ravi et al., 2010).

We also determined whether mutation in MUN leads to

any defects in gamete development. We performed

Alexander staining to observe the pollen defects in the

heterozygotes, mun-1/+ and mun-2t/+ (Figure 7b). The

mun-2t/+, as well as mun-1/+, had normal pollen viability.

In addition, no ovule abortion (aborted ovule before fertil-

ization) was observed in both mun-1/+ and mun-2t/+

(Table 1). Therefore, the gametophytic development in the

mun null mutants was normal, indicating that MUN may

not play a major role in gametophytic development.

Among the four components of the NDC80 complex,

only the null allele of NUF2 was available for research.

Thus, we analyzed the heterozygotes of the nuf2 null allele,

nuf2-1/+ (SALK_087432), a T-DNA insertion line. The nuf2-1

exhibited a zygotic lethal phenotype similar to mun-2t (Fig-

ure 7a and c). The seeds with homozygous genotype of

nuf2-1 were not obtained, and approximately 25% of seeds

(n = 336) from the siliques of nuf2-1/+ were aborted

(Table 1). The embryos of nuf2-1 were found to be arrested

at a similar stage (before the globular stage) and showed

abnormal cell division patterns similar to that of mun-2t

(Figure 7c, red arrows). In addition, defective pollen and

ovule abortion in nuf2-1 were rarely detected (Figure 7b;

Table 1), indicating that nuf2-1 also causes an embryonic

zygotic lethal phenotype similar to that of mun-2t.

DISCUSSION

MUN is an ortholog of SPC24, a component of the NDC80

kinetochore complex

Although MUN is not annotated as SPC24 in the TAIR10

database, our data support the view that MUN is a

AtSPC24. First, although overall sequence similarity was

limited, the sequence from the C-terminal region in MUN

is relatively well conserved with that of SPC24 across many

other species (Figure 4b). The predicted 3D protein struc-

ture also indicated that the critical residues for globular

head domain in MUN are highly conserved (Figure S2).

Secondly, the null allele of MUN exhibited a zygotic

embryonic lethal phenotype similar to that of the null

mutant of NUF2, another component of the NDC80 com-

plex. Thirdly, the spatial and cellular localization of MUN

overlapped with that of NUF2, NDC80 and SPC25, which

are the other known components of the NDC80 complex

(Figures 5 and 6). Additionally, CENH3, a centromere-spe-

cific histone variant, which is co-localized with NUF2 and

SPC25 in Arabidopsis (Du and Dawe, 2007; Rushing, 2008;

Ramahi, 2012), was also co-localized with MUN at the cen-

tromere. Finally, all of the components of the NDC80 com-

plex were found to co-immunoprecipitate with MUN in

planta (Figure 6c). Thus, we identified the NDC80 complex

in Arabidopsis, which has not yet been disclosed.

Among the components of the NDC80 complex, SPC24

is the only component that has not yet been annotated in

the TAIR10 database. This implies that SPC24 seems to be

the rapidly evolving gene. Such rapid evolution has also

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986 Jinwoo Shin et al.

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been reported in other components of the kinetochore,

such as DNA sequences of centromeres and CENH3 (Henik-

off et al., 2001; Talbert et al., 2002). Such rapid evolution

may contribute to the establishment of post-zygotic repro-

ductive barriers, which cause hybrid sterility after specia-

tion (Maheshwari et al., 2015). The rapid changes in the

components of the kinetochore would lead to failure of

chromosome movement in the hybrid offspring, thus caus-

ing hybrid sterility. Thus, MUN in Arabidopsis, from an

evolutionary viewpoint, may facilitate speciation.

Divergence of the plant NDC80 complex

Although NDC80, NUF2, SPC25 and MUN/SPC24 form a

canonical tetramer complex in diverse species, each com-

ponent does not seem to maintain the stoichiometric ratio

in Arabidopsis. The in silico expression analysis using 113

different plant tissues showed that the expression level of

NDC80 is in general lower than that of the other

components (Figure S4). This may indicate that each com-

ponent of the NDC80 complex has other functions in addi-

tion to kinetochore formation. For example, the nuf2-1

mutant exhibited a weak ovule abortion phenotype,

although the null allele of mun-2t did not show any ovule

abortion (Figure 7a), indicating NUF2 has other develop-

mental functions. Thus, it is possible that other functions

have evolved for the many components of the NDC80

complex.

We also found that the cellular localization pattern of the

NDC80 complex in Arabidopsis is diverged from that of

other species. For example, NDC80 in yeast and animals

appears transiently at prophase and anaphase during the

M phase as centromeric dots, whereas NDC80 in corn is

stably localized at the centromere throughout the cell

cycles (Chen et al., 1997; Wigge and Kilmartin, 2001; Hori

et al., 2003; McCleland, 2003; Asakawa et al., 2005; Du and

Dawe, 2007). Similar to ZmNDC80 in corn, MUN and other

Figure 7. Null allele, mun-2t and nuf2-1 show similar zygotic lethal phenotype.

(a) Seed abortion phenotypes observed in the siliques of WT, mun-1/+, mun-2t/+ and nuf2-1/+. Red arrows denote seed abortion, yellow arrow denotes ovule

abortion.

(b) Comparison of pollen vitality by Alexander staining of WT, mun-1/+, mun-2t/+ and nuf2-1/+.(c) Phenotype of mun-2t/+ and nuf2-1/+ showing defects in embryo development. Red arrows show embryo cells with abnormal cell division pattern. Yellow dot-

ted lines highlight the embryos.

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Kinetochore protein SPC24 homolog in Arabidopsis 987

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components of the NDC80 complex in Arabidopsis were

constitutively localized at the centromeres throughout the

cell cycle (Figures 5 and 6a). This may indicate that subtle

differences in the mechanism of spindle fiber attachment

to the kinetochore have evolved in plants. Studying such

differences between plants and other organisms might be

a challenge, especially in understanding the unique fea-

tures of plant cell division.

Null mutations of the NDC80 complex are fully

transmissible via pollen and ovules

The homozygous null mutant of mun from the silique of

the heterozygous plant shows the zygotic embryonic lethal

phenotype, but it does not exhibit any defects in gamete

development, and both pollen and ovule development.

Consistently, the nuf2-1 mutant does not show any defect

in the pollen development and exhibits a very weak defect

in ovule development (Figure 7a and b). The possible

explanation for such lack of defects in the gamete develop-

ment in the mutants of the components of the NDC80 com-

plex is that there may be adequate amounts of proteins

required for multiple rounds of cell division in the megas-

pore or pollen mother cells produced by the heterozygote

parent. For the gametophyte development, only two-three

rounds of cell division are required; thus, either the pre-

made mRNA or protein in the megaspore or pollen mother

cells is in excess of the threshold level, or the proteins are

very stable and recycled during the multiple cell cycles for

gametophyte development.

Spontaneous DNSO in mun-1

mun-1 produced shoots at random sites, which is indica-

tive of DNSO. In general, de novo organ generation could

be induced by hormonal manipulations in tissue culture

(Skoog and Miller, 1957). Recent reports also showed that

DNSO is mediated by the coordination of auxin and cytoki-

nin through the regulation of WUS (Su et al., 2014; Zhang

et al., 2017). Thus, the DNSO in the mun-1 may be caused

by the perturbation of biosynthesis or the flow of plant

hormones in the mutant. In other respects, incomplete or

delayed cell plate formation in the mun-1 mutant by mis-

segregation of chromosomes during the process of cell

division may affect mis-localization of PIN1, which perturbs

proper auxin flow. In humans, cancer cells that display

aneuploid karyotypes and mis-segregate chromosomes

show a distinctive cytokinesis failure phenotype (Nicholson

et al., 2015). Because the growth of the cell plate is depen-

dent upon the phragmoplast formation in plants (Higaki

et al., 2008) and chromosome defects generally affect

phragmoplast development, we expected the defects in

cell walls in mun-1. During somatic embryogenesis, the

localization of PIN1 has an important role in the initiation

of stem cell niche by establishing auxin gradients (Su and

Zhang, 2009; Su et al., 2009). Therefore, improper

localization of PIN1 by the malfunction of the phragmo-

plast and cell plate formation may cause the DNSO at the

inappropriate place.

Aneuploidy in the mun-1 mutant may also cause the

DNSO indirectly. Recent reports in mammalian studies

showed that aneuploidy in the embryonic stem cells

causes impaired differentiation and increased neoplastic

potential (Zhang et al., 2016). Similarly, aneuploid cells in

the mun-1 may have an increased totipotency via an

unknown mechanism (Figure 3h). Consistently, some ane-

uploid lines in Arabidopsis show severe morphological

defects, such as curly leaves, fasciation, triple branches

and reversion to meristematic tissues (Henry et al., 2005,

2010). Nevertheless, how aneuploidy causes such morpho-

logical defects remains to be resolved.

In this study, we described the phenotypic effects of the

mutation in the components of the NDC80 complex at the

organism level. Further analyses will be required to dissect

the different properties of the NDC80 complex between

plants and animals, and to understand the mechanism by

which malfunction of the kinetochore components causes

the ectopic shoot organogenesis.

EXPERIMENTAL PROCEDURES

Plant materials and growth conditions

All A. thaliana that were used in this study were Col-0 background.The mutant, mun-1, was generated by transforming Col-0 with thepSKI015 vector used for activation tagging mutagenesis.The seeds of nuf2-1 (SALK_087432) were obtained from the ABRC.The plants were grown under 16 h/8 h light/dark cycle (22°C/20°C)in a controlled growth room with cool white fluorescent lights(125 lmol m�2 sec�1).

Constructs design

All constructs were created using genomic sequences coveringpromoters and the complete coding sequences fused with repor-ter genes or tag proteins. For WUS, a 1.7-kb upstream sequencefrom ATG was used, and for NDC80, NUF2, SPC25 and MUN, a2-kb upstream sequence from ATG was used as the promoter.pWUS::WUS-GUS and pMUN::MUN-GUS were constructed in thepDW137 vector, which has the GUS coding sequence (Blazquezet al., 1997). pNDC80::NDC80-eGFP, pNUF2::NUF2-eGFP, pSPC25::SPC25-eGFP, pMUN::MUN-eGFP were constructed by the fusionof the eGFP coding sequence at the C-terminus of each genomicsequence in the pCAMBIA1300-NOS vector (Cho and Cosgrove,2002; Lee et al., 2010). pMUN::MUN-mRFP1 was constructed inthe pBI-mRFP vector (Park et al., 2014b). pJW20 (pMUN::MUN)was constructed in the pPZP211 vector (Hajdukiewicz et al., 1994),whereas pMUN::MUN-FLAG was constructed by fusion of 3X-FLAG peptides at the C-terminus of the MUN genomic sequencesin the pJW20 vector.

TAIL-PCR and molecular marker-assisted mapping

We performed TAIL-PCR as previously described (Liu et al.,1995; Liu and Chen, 2007). Molecular marker-assisted mappingwas followed using the method previously described (Choiet al., 2005).

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Gene expression analysis

Total RNA was extracted using RNeasy Plant Mini Kit (Qiagen) fol-lowing the manufacturer’s instructions. Quantitative real-timepolymerase chain reaction (RT-qPCR) analysis was repeated atleast three times using CFX96TM Real-Time PCR System and iQSYBR Green supermix (Bio-Rad). TUB2 was used as a referencegene.

Confocal laser-scanning microscopic (CLSM) analysis

Samples were pre-stained with PI or DAPI, and mounted on glassslides and observed using confocal microscopy (LSM700, Zeiss orTCS SP8, Leica) following the manufacturer’s instructions. Toobserve the M phase cells in the pUBQ14::GFP-TUA6 transgenicline, samples were fixed as previously described (Park et al.,2014a).

Imaging scanning electron microscopy (SEM)

For use with a SEM (SUPRA 55VP, Zeiss), the samples were fixedwith Karnovsky’s fixative and osmium tetroxide. After treating thesamples for dehydration with serial ethanol washes, samples weredried with a critical point dryer (Bal-Tec CPD-030). Samples weremounted on the carbon tape of a metal stub and coated with goldparticles using a sputter coater (BAL-TEC/SCD 005).

Targeted gene knockout by TALEN and CRISPR/Cas9

TALEN (Transcription activator-like effector nuclease) modules totarget the 1st exon sequence of MUN were designed and clonedby ToolGen, Seoul, South Korea. The TALEN-L and TALEN-R mod-ules were subcloned into the plant binary vector harboring theCaMV 35S promoter. The constructs were transformed into Col-0.Selected T1 plants for each TALEN-L and TALEN-R module underthe proper antibiotic selection were crossed. The null mutantswere selected from the seedlings of the F2 generation. For thegeneration of mutants using CRISPR/Cas9, we followed a previ-ously described method with a few modifications (Hyun et al.,2015). The five candidate target sequences in the MUN exon wereselected using Cas-OFFinder program (http://www.rgenome.net/cas-offinder/; Bae et al., 2014). These constructs were transformedinto Col-0, and the null mutants were isolated in the seedlings ofthe T2 generation. The mutants were confirmed by T7E1 assayand sequencing of the target sequence in the progenies.

Flow cytometry

Flow cytometric analysis to measure DNA contents was per-formed as previously described, with some modifications (Gal-braith, 2009). Tissues from aerial parts were sliced with a razorblade in Tris-MgCl2 buffer with PI and RNase. Then, the solutionwas filtered using a 40-lm cell strainer and run in FACSCantoTM

following the manufacturer’s instructions (BD Biosciences). Sam-ples were gated for singlet events using a FSC-A by FSC-H plotand subsequently gated using a PE-A by PerCP-A plot. Histogramswere created using BD FACSDivaTM software. Values for % CVwere obtained from the equation below.

%CV ¼ 100� ðStandardDeviation;r�Mean; lÞ

Edu cell proliferation assay

EdU (5-ethynyl-20-deoxyuridine) staining to detect S-phase cellswas performed using an Invitrogen Edu Kit (C10350) following themanufacturer’s instructions. Seedlings were sampled in liquid MS

solution containing 1 lM Edu and incubated in a culture room at22°C for 30 min.

Seed-set analysis, whole-mount clearing and pollen

viability analysis

Siliques were dissected under a stereoscope. Whole-mount clear-ing and pollen viability analysis were performed as previouslydescribed (Park et al., 2014b).

GUS staining

GUS staining and histological analysis were performed followingstandard methods that have been previously described (Choiet al., 2007). Photographs were taken with a USB digital-micro-scope Dimis-M (Siwon Optical Technology, South Korea).

Multiple alignment and phylogenetic analyses

Multiple alignments of protein sequences were performed withCLC Main Workbench. The phylogenetic tree was generated withMEGA7 (Kumar et al., 2016) using the maximum likelihoodmethod based on the JTT matrix-based model (Jones et al., 1992).All positions with less than 90% site coverage were eliminated.

Y2H assay

Full-length cDNAs were individually cloned into the pGADT7 preyvector and pGBKT7 bait vector, and transformed into AH109 yeastcells. The Y2H assay was performed according to the manufacturer’sinstructions (Matchmaker GAL4 Two-Hybrid System 3, Clontech).

Co-IP assays

Co-immunoprecipitation experiments in seedlings of Arabidopsiswere performed as previously described, with a few modifications(Lee and Seo, 2016). Up to 1 g of seedlings was homogenized in amortar with grinding buffer [50 mM Tris-HCl (pH 7.5), 150 mM NaCl,10 mM MgCl2, 0.1% Nonidet P-40, 1 mM phenylmethylsulfonylfluo-ride, and protease inhibitors]. Total protein extracts were immuno-precipitated with GFP-Trap�_A beads (gta-20, Chromotek) for 1 hat 4°C with gentle rotation. The precipitated samples and beadswere washed with the grinding buffer, and then eluted by incuba-tion with 2 9 sodium dodecyl sulfate–polyacrylamide gel elec-trophoresis loading buffer at 95°C. The eluates were subsequentlyused for Western blot analysis with anti-GFP (1:2000 dilution; JL-8,Clontech) or anti-FLAG antibodies (1:2000 dilution; F3165, Sigma).Signals of Western blots were detected by a chemiluminescentCCD imager (ImageQuantTM LAS 4000, GE Healthcare LifeSciences) with ECL solution (WesternBrightTM Sirius, Advansta).

Oligonucleotide primers

The sequences of oligonucleotide primers used in this work arelisted in Table S2.

ACCESSION NUMBERS

Sequence information cited in this article can be found in

the Arabidopsis Genome Initiative, or GenBank/EMBL data

libraries under the following accession numbers: MUN

(AT3G08880), NDC80 (AT3G54630), NUF2 (AT1G61000),

SPC25 (AT3G48210), WUS (AT2G17950), TUB2 (AT5G62690);

and UniProt ID for the protein sequence of SPC24 (Pfam

accession PF08286) homologs in various species: Xenopus

tropicalis (Q6P8A1), Homo sapiens (Q8NBT2), Saccharomyces

© 2018 The AuthorsThe Plant Journal © 2018 John Wiley & Sons Ltd, The Plant Journal, (2018), 93, 977–991

Kinetochore protein SPC24 homolog in Arabidopsis 989

Page 14: MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 …ilhalee.snu.ac.kr/pdf/MUN.pdfMUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development

cerevisiae (Q04477), Schizosaccharomyces pombe (Q9UST6),

Mus musculus (Q9D083), Bos taurus (Q24JY3), Danio rerio

(Q503N2), Arabidopsis lyrata (D7L7N7), Arabidopsis thaliana

(Q67XT3), Capsella rubella (R0I4I6), Glycine max (K7MTM7),

Sorghum bicolor (A0A1B6PL61); and NCBI Reference

Sequence for the protein sequence of SPC24 homologues:

Gallus gallus (XP_015129502.1), Zea mays (NP_001142463.1);

and Gene information of Phytozome for the protein sequence

of SPC24 homologs: Brassica rapaFPsc (Brara.A03558.1),

Boechera stricta (Bostr.22252s0186.1), Brachypodium dis-

tachyon (Bradi5g11082.1) and Capsella grandiflora (Cagra.

2991s0006.1). UniProt ID for the protein sequence of yeast

CTF19 and human KNL1 are Q02732 and Q8NG31, respec-

tively. The IDs of the chicken CENP-T-Spc24/25 complex in

Protein Data Bank (PDB) is 3vza.

ACKNOWLEDGEMENTS

The authors thank Dr David Twell for providing ProUBQ14:GFP:TUA6 seeds, and Dr Frederic Berger for providing ProHTR12:HTR12:GFP seeds. The authors also thank Dr S. Chul Kwon for creating 3Dpictures of GgSPC24-GgSPC25 and for discussions on structuralinsights, and Dr Eunsook Park for critical reading of the manuscript.This work was supported by the National Research Foundation ofKorea (NRF) Grants from the Korean Government, No. 2014023132and NRF-2017R1D1A1B03030489. J. Shin, G. Jeong and J.-Y. Parkwas supported by the Brain Korea 21 program. J. Shin and J.-Y.Park was supported by a Seoul Science Fellowship.

CONFLICT OF INTEREST

The authors have no conflict of interest to declare.

SUPPORTING INFORMATION

Additional Supporting Information may be found in the online ver-sion of this article.Figure S1. Cloning of MUN.Figure S2. Predicted protein structure of MUN, a SPC24 homolog.Figure S3. Generation of null alleles of MUN by targeted geneknockout techniques.Figure S4. Expression profiles of the four components of theNDC80 complex obtained from the analysis of RNA-Seq expres-sion data for 113 different samples in Araport DB.

Table S1. Segregation ratio of seeds obtained from the self-crossof mun-1/+ for antibiotic resistance.Table S2. List of primers used in this study.

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