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    What is Spectroscopy?

    The study of molecular structure and

    dynamics through the absorption,

    emission and scattering of light.

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    What is Light?

    According toMaxwell, light is anelectromagnetic field

    characterized by afrequency f, velocity v( c in vacuum), andwavelength . Lightobeys therelationship

    = c / .

    Its energy is E= h

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    The Electromagnetic Spectrum

    = c / lE = h

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    X-ray:

    core electronexcitation

    UV:

    valenceelectronic

    excitation

    IR:

    molecularvibrations

    Radio waves:

    Nuclear spin states(in a magnetic field)

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    Spectral Distribution of Radiant Energy

    Wave Number (cycles/cm)

    X-Ray UV Visible IR Microwave

    200nm 400nm 800nm

    WAVELENGTH(nm)

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    Spectroscopic Techniques

    UV-vis UV-vis region bonding electrons

    Atomic Absorption UV-vis region atomic transitions (val. e-)

    FT-IR IR/Microwave vibrations, rotations

    Raman IR/UV vibrations

    FT-NMR Radio waves nuclear spin states

    X-Ray Spectroscopy X-rays inner electrons, elemental

    X-ray Crystallography X-rays 3-D structure

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    UV = 300 kcal/mol

    10-5

    10-5

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    Molecules have quantized energy levels:

    ex. electronic energy levels.

    energy

    hv

    energy

    }= hv

    Q: Where do these quantized energy levels come from?

    A: The electronic configurations associated with bonding.

    Each electronic energy level(configuration) has

    associated with it the many

    vibrational energy levels we

    examined with IR.

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    2s 2s

    s

    s*

    s

    s*

    p*

    p

    2p 2pn

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    C C

    s

    s*

    hv

    s

    s*

    s s*

    C C

    H

    H

    H H

    HH

    lmax

    = 135 nm (a high energy transition)

    Absorptions having lmax< 200 nm are difficult to observe because

    everything (including quartz glass and air) absorbs in this spectral

    region.

    Ethane

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    C C

    s

    s*

    hv

    p

    p*

    s

    s*

    p

    p*

    p p*

    Example: ethylene absorbs at longer wavelengths:lmax= 165 nm = 10,000

    = hv=hc/l

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    s

    s*

    hv

    p

    p*

    n

    s

    s*

    p

    p*

    n

    C O

    p*n

    The n to pi* transition is at even lower wavelengths but is notas strong as pi to pi* transitions. It is said to be forbidden.

    Example:

    Acetone: ns* lmax= 188 nm ; = 1860

    np* lmax= 279 nm ; = 15

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    C C

    C C

    C O

    C O

    H

    s s* 135 nm

    p p*165 nm

    n s* 183 nm weak

    p p* 150 nm

    n s* 188 nmn p* 279 nm weak

    l

    A

    180 nm

    279 nm

    C O

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    C C

    HOMO

    LUMO

    Conjugated systems:

    Preferred transition is between Highest Occupied Molecular Orbital

    (HOMO) and Lowest Unoccupied Molecular Orbital (LUMO).

    Note: Additional conjugation (double bonds) lowers the HOMO-

    LUMO energy gap:

    Example:

    1,3 butadiene: lmax= 217 nm ; = 21,000

    1,3,5-hexatriene lmax= 258 nm ; = 35,000

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    Lycopene:

    lmax= 114 + 5(8) + 11*(48.0-1.7*11) = 476 nm

    lmax(Actual) = 474.

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    Electronic (UV) spectroscopy Light absorbedelectron excited to higher

    molecular orbital Transitions occur from HOMO to LUMO

    - Highest Occupied Molecular Orbital

    - Lowest Unoccupied Molecular Orbital

    E=h

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    What functional groups are observed

    in UV/vis spectrum?

    UV/vis (200-600 nm)

    Functional groups

    KetoneEster

    Amide

    Conjugated D.B

    Not observedC-C

    C-H

    C=C (isolated)

    C-C

    LUMO s

    HOMO s

    C=C

    LUMO p

    HOMO p

    C=C-C=C

    LUMO

    HOMO

    l=217 nm

    Excitation

    p4

    p3

    p2

    p

    1

    l=165nm

    l=125nm

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    Chromophores

    Chromophores- Part of molecule responsible forabsorption

    Auxochromes- Groups that modify absorption ofneighboring chromophores- Often have lone pairs, e.g.OH, -OR,

    -NR2, -halogen- Bathochromic shift: towards longerwavelength

    - Hypsochromic shift: towards shorterwavelen th

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    The wavelength and amount of light that a compound

    absorbs depends on its molecular structure and theconcentration of the compound used.

    T itt d

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    Transmittance and

    Concentration

    The Bouguer-Lambert Law

    PathlengthConst

    eIIT

    0/

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    Transmittance and Path Length:

    Beers Law

    ionConcentratConsteIIT 0/

    Concentration

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    BEER LAMBERT LAW

    Glass cell filled with

    concentration of solution (C)

    IILight0

    As the cell thickness increases, the intensity of I

    (transmitted intensity of light ) decreases.

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    T- Transmittance

    T = I0- original light intensity

    I- transmitted light intensity

    % Transmittance = 100 x

    Absorbance (A) or optical density (OD) = Log

    = Log

    Log is proportional to C (concentration of solution)

    and is also proportional to L (length of light path

    through the solution).

    I

    I0

    I

    I0

    I0

    I

    1

    T

    I

    I0

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    A CL = KCL by definition and it is called

    the Beer Lambert Law.

    A = KCL

    K = Specific Extinction Coefficient ---- 1 g of

    solute per liter of solution

    A = ECL

    E = Molar Extinction Coefficient ----

    Extinction Coefficient of a solution containing

    1g molecule of solute per 1 liter of solution

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    L = Cm

    C = Moles/Liter

    A = KCL

    A = No unit C = Gram/Liter L = Cm

    A = ECL = ( LiterCm x Mole

    ) x MoleLiter

    x Cm

    K=

    Liter

    Cm Gram

    A = KLC = (Liter

    Cm x Gram

    Gram

    Literx Cm) x

    UV VIS SPECTROMETERS ARE UBIQUITOUS

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    P 8

    BEGIN

    HERE

    UV-VIS SPECTROMETERS ARE UBIQUITOUS

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    Characteristics of UV-Vis spectra of

    Organic Molecules

    Absorb mostly in UV unless highlyconjugated

    Spectra are broad, usually to broad for

    qualitative identification purposes Excellent for quantitative Beers Law-type

    analyses

    The most common detector for an HPLC

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    Broad spectra

    Overlapping vibrational and rotational

    peaks Solvent effects

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    P354

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    A = 0.8

    Conc: 4x10-5M

    Path: 1 cm

    = 0.8/4x10-5x1

    = 2x104

    = 20000

    Isoprene

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    P356

    (see also 359)

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    Conventional

    Spectrophotometer

    Schematic of a conventional single-beam spectrophotometer

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    Light Sources

    Hydrogen Gas Lamp

    Mercury Lamp

    Tungten lamp (350-2500 nm)

    Deuterium (200-400 nm)

    Xenon Arc lamps (200-1000 nm)

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    Dispersion Devices

    Non-linear dispersion

    Temperature sensitive

    Linear Dispersion

    Different orders

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    Cells

    UV Spectrophotometer

    Quartz (crystalline silica)

    Visible Spectrophotometer

    Glass

    IR Spectrophotometer

    NaCl

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    Open-topped rectangular standard cell (a)

    and apertured cell (b) for limited sample volume

    Cell Types I

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    Conventional

    Spectrophotometer

    Optical system of a double-beam spectrophotometer

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    STEPS IN DEVELOPING

    SPECTROPHOTOMETRIC

    N LYTIC L METHOD

    1. Run the sample spectrum

    2. Obtain a monochromatic

    wavelength for the

    maximum absorption

    wavelength.

    3. Calculate the concentration

    of your sample using Beer

    Lambert Equation: A = KCLWavelength (nm)

    Absorbance

    0.0

    2.0

    200 250 300 350 400 450

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    Slope of Standard Curve = A

    C

    1 2 3 4 5

    1.0

    0.5

    Concentration (mg/ml)

    Absorbance at 280 nm

    There is some A vs. C where graph is linear.

    NEVER extrapolate beyond point known where

    becomes non-linear.

    SPECTROMETRIC ANALYSIS USING

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    SPECTROMETRIC ANALYSIS USING

    STANDARD CURVE

    1 2 3 4

    0.4

    0.8

    1.2

    Absorbance at 540 nm

    Concentration (g/l) glucose

    Avoid very high or low absorbencies when drawing a

    standard curve. The best results are obtained with 0.1 < A

    < 1. Plot the Absorbance vs. Concentration to get astrai ht line

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    Every instrument has a useful range for a

    particular analyte.

    Often, you must determine that rangeexperimentally.

    This is done by making a dilution series of

    the known solution.

    These dilutions are used to make a

    working curve.

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    Make a dilution series of a known quantity

    of analyte and measure the Absorbance.

    Plot concentrations v. Absorbance.

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    What concentration do you think the

    unknown sample is?

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    In this graph, values above A=1.0 are not linear. If we

    use readings above A=1.0, graph isnt accurate.

    C lib ti M th d

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    Calibration MethodsStandard Addition

    1.) Protocol to Determine the Quantity of an Unknown(i) Known quantities of an analyte are added to the unknown

    -known and unknown are the same analyte

    - increase in analytical signal is related to the total quantity of the analyte

    -requires a linear response to analyte

    (ii) Very useful for complex mixtures

    - compensates for matrix effect change in analytical signal caused by

    anything else than the analyte of interest.

    (iii) Procedure:

    (a) place known volume of unknown sample in multiple flasks

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    C lib ti M th d

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    XS

    X

    ff

    i

    I

    I

    XS

    X

    Calibration MethodsStandard Addition

    1.) Protocol to Determine the Quantity of an Unknown(iii) Procedure:

    (d) Measure an analytical response for each sample

    - signal is directly proportional to analyte concentration

    solutionfinalfromsignal

    solutioninitialfromsignal

    solutionfinalindardtansplusanalyteofionConcentrat

    solutioninitialinanalyteofionConcentrat

    Standard addition equation:

    V

    VSS

    V

    VXX Sif

    oif

    dardtansofvolumeaddedV,volumeinitialunknownV,VVV SoSo

    Total volume (V):

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    VIS-Transmission and Color

    The human eye sees the complementary color to that which is

    absorbed

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