32
John Speakman Institute of Genetics and Developmental Biology Chinese Academy of Sciences Beijing, China Institute of Biological and Environmental Sciences University of Aberdeen Scotland, UK IAEA December 2018 Launch of the IAEA Doubly-labelled water database

John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

  • Upload
    others

  • View
    2

  • Download
    0

Embed Size (px)

Citation preview

Page 1: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

John Speakman

Institute of Genetics andDevelopmental BiologyChinese Academy of SciencesBeijing, China

Institute of Biological and Environmental SciencesUniversity of AberdeenScotland, UK

IAEADecember 2018

Launch of the IAEA Doubly-labelled water database

Page 2: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 3: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

The doubly-labelled water method is an isotope based method that enables measurements of energy expenditure in free living subjects

Page 4: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

How do we measure energy expenditure?

Glucose + 6 O2 6 H20 + 6 CO2 + energy

Palmitate + 23 O2 16 H20 + 16 CO2 + energy

We can measure energy use by measuring O2consumption and CO2 production

Or just one of theseIF we know the dietary composition

Page 5: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Measuring VO2 and VCO2

Classical method

Respirometry orindirect calorimetry

Gives

Resting and Basalmetabolism

Page 6: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Basal / REST Activity

Other main component of energy expenditure = activity energy expenditure

Page 7: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Doubly-labelled water method

Page 8: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Publisher – SpringerAvailable from AMAZON

ISBN: 0 412 63780 4

573 US$ !!!

Amazon sales rank

1,496,337 !

Page 9: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

The technique is the only available method that actually measures free-living energy expenditure

We could use it to answer some big questions

1) What are the important factors that influence energy expenditure?

2) Do some people get obesity because they have low metabolism?

3) Has energy expenditure declined over the duration of the obesity epidemic?

4) ……etc

Page 10: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

But there are some problems.

1) It is expensive to use (about 1000 US$ /measurement)

2) It is technically difficult to apply

3) So sample sizes in studies tend to be small

4) Relatively few labs have the expertise to use it

Page 11: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 12: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

John Speakman Herman Pontzer Dale Schoeller

Klaas Westerterp Bill Wong Yosuke Yamada

Tokyo 2014 Recent advances and controversies in Energy metabolism conference (RACMEM)

DLW technique workshop

Idea was raised thatwe should pull togetherall the DLW measurementsinto a single databasethat would allow us toanswer questionsthat single studies couldn’t

Page 13: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

2015 Boston, USA.

Hosted by Susan Roberts

Discussed data format

Individual group leaders went away to

compile their data and submit it.

2016 Vancouver, Canada

Between the Boston and Vancouver

meetings 4893 data records had

been submitted to the database.

1 record = 1 measurement on one person.

2016 IAEA agree to host the database

Susan Roberts

Cornelia Loechl

Page 14: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

2017 Fribourg, Switzerland RACMEM DLW workshop II

Rethink of format

Formation of management group

Definition of rules for submission

Rules for proposing analysis

Page 15: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

IAEA DLW database management group established oct 2017

John Speakman Herman Pontzer(chair)

Jennifer Rood Hiroyuki Sagayama

Dale Schoeller

Klaas Westerterp Bill Wong Yosuke Yamada Alexia Alford Yaraslav Pynda

Page 16: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

2018

Takashi Oono confirms SANSO and Ken Neal confirms SERCON and Sigma Aldrich will be collaborators on the database for the next 5 years.

2018 Herman Pontzersuccessfully secured funding from the NSF in the USA to perform some analyses on the database.

Page 17: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 18: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Summary stats

Version 2.4

N = 6621 individuals Breakdown by sex females 3949males 2411unknown 261

Breakdown by country Australia 6 Mauritius 40Belgium 70 Morocco 22Bolivia 45 Nepal 5China 36 Netherlands 858Denmark 38 Norway 38Ecuador 14 Spain 31Finland 76 Sweden 105 France 9 Switzerland 2Germany 84 Tanzania 48Greece 19 UAE 29Japan 174 UK 189Kenya 39 USA 4557

24 countries including data from 201 separate studies

Page 19: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Number of records v date OPENHealth ABC CALERIE

Health ABC 2

YEAR

Page 20: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Breakdown by age

AGE class (years)

Page 21: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

05

10152025303540

0 50 100 150 200 250

Body mass plot DEE(MJ/day)

Body weight (kg)

Page 22: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 23: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Data submission is via a template file in EXCEL

The template file is on the web site

There are a set of mandatory fields for submission

We encourage people to add as much extra information as possible

Eg Basal metabolism, physical activity data etc

Page 24: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Before upload into the database the information is screened for potential typos etc.

Data will be uploaded and the database uploaded on the website approximately every 3 months

Page 25: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 26: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

Proposed analyses can be submitted to the management board at any time.

We encourage people to discuss their ideas with someone on the board in advance

We don’t allow duplicate analyses – so you need to check the list of already proposed analyses

Once your analysis is approved it will be added to the ‘currently proposed analysis list’

Page 27: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

One thing we have struggled with isethical review boards not wishing raw data to be distributed

To overcome this problem to run a particular analysis individuals will submit ‘R’ Scripts

These scripts will be run and the output transferred back to the researcher

There is a trial dataset on the website that can be downloaded to refine R scripts prior to their submission

We are also currently looking at other ways to enable analyses (if you have ideas contact me)

Page 28: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 29: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1.Effect of year of measurement on DEEExpands the analysis Westerterp and Speakman (2008) in IJO

2. Energy demands of traditional vs modern lifestylesAnalysis of the effects of ecological & lifestyle variables to see how lifestyle (occupation, economic development) and physical environment (eg climate) affects DEE

1980 2018

Page 30: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

1. What is the Doubly-labelled water (DLW) method?

2. History of the DLW database

3. What is in the database?

4. How can I submit data to it?

5. How do I propose an analysis?

6. Currently planned analyses

7. Where can I find it?

Page 31: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences

https://doubly-labelled-water-database.iaea.org

Any questions please email me : [email protected]

Page 32: John Speakman€¦ · John Speakman. Institute of Genetics and Developmental Biology. Chinese Academy of Sciences. Beijing, China. Institute of Biological and Environmental Sciences