Upload
biocatalogue
View
368
Download
2
Tags:
Embed Size (px)
DESCRIPTION
Introduction slides for the BioCatalogue demo at ISMB 2009. Presented by Franck Tanoh and Jiten Bhagat
Citation preview
http://www.biocatalogue.org
ISMB, 01 July 2009
Franck Tanoh Jiten Bhagat University of Manchester, UK
• Public, curated catalogue of Life Science Web Services
• Register, find, curate Web Services
• Share with the community, your colleagues or yourself
• Web 2.0 site and development
• REST API
• Open source code base
The BioCatalogue…
Who?
Web Services?
• A component that you send some inputs to
and get some output over a network
• Web services from different location can be used together
• Platform independent
Why?
Guesstimate 3000+ Web Services in Life Science publicly available
•Where…can I find them? advertise?
•What…do they do? Can I use them?
the cost? the licenses?
•How…do they work? up to date?
•Who…provides them? recommends them?
Stakeholders
• Service providers
advertise service
help with monitoring
• Users
find, use services
• Curators
professional, community, you!
• Tool developers
use the BioCatalogue in their application
Content
• Community contributed
– Service providers
– Third Parties
– You!
• Sourced from partners and registries
• Curators
Curation
• Free text,
• Tags, controlled vocabulary
• Automated WSDL ripping and analytics
• Automated monitoring & testing
• Partner feeds (e.g. myExperiment)
Let’s see
Demo
• Easy submission of services
• Easy discovery of services
• Better visibility of services
• Bringing service providers, curators members, users together
• Attribution
• Combining subjective, objective, measurable, social and automated information and metrics
•OpenSearch•iGoogle •Facebook •Taverna•myExperiment
•… and yours?
Alternative interfaces
Users
Services
Curation
Monitoring
Integration
test scripts
REST APIOpen Search
myExperiment
Instances and versioning
QoS feeds
notification
ratings
recommendations
Identity management
Content Provider engagementPolicy identification
Taverna
Ownership
account management
BioMoby DAS
Next?
Curation tools
Google gadget
RSS/ATOM
Try it first
Level of curation
Feedback providers
curators
More services
Internal messaging
www.biocatalogue.org wiki
Get Involved
Users oriented project
• Join our friend’s list: www.biocatalogue.org/wiki
• Contact us: [email protected]
Credits
Thomas LaurentHamish McWilliams
Franck Tanoh Jiten BhagatCarole Goble
Rodrigo LopezEric Nzuobontane
Steve Pettifer
Katy Wolstencroft
Robert Stevens
David De Roure
www.biocatalogue.org