Interpretative Antibiotype Reading

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How to read and apply interpretative rules to AST test results.Part of the Microbiology Technical Workshop, Singapore, 2013.

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  • INTERPRETATIVE

    READING

    Tan Thean Yen

  • To

    interpret

    explain the meaning of (information, words, or actions)

  • What Women Say What It Means

    Yes No

    No Yes

    You have to learn to communicate...

    Just agree with me.

    Are you listening to me!?

  • To

    analyse susceptibility results

    based: organism identification

    all antibiotic results (pattern)

    interpret susceptibility based on above

    Courvalin P. Interpretive reading of in vitro antibiotic susceptibility tests (the antibiogramme).

    Clinical Microbiology and Infection. 1996;2:S26S34.

  • Why interpret?

    To detect unusual results that need further testing or confirmation

    To report appropriate antibiotic results for the organism-infection combination

    To detect emerging resistance

  • Description of action to be taken, based on

    current evidence, in response to specific

    antimicrobial susceptibility test results

    E

    X

    P

    E

    R

    T

    R

    U

    L

    E

    Expert rule

    - Katharine Hepburn

  • Actions

    Recommendations on reporting

    Inference of susceptibility

    Edit results from S to I or R, from I to R, but NEVER I or R to S

    Suppression of results

    Addition of comments

    Advice on further tests

    Advice on referral of isolates

    E

    X

    P

    E

    R

    T

    R

    U

    L

    E

  • Requirements

    Identification of the organism (fully)

    May need to test an extended range of appropriate antibiotics

    Access to a set of expert rules

    E

    X

    P

    E

    R

    T

    R

    U

    L

    E

  • Three areas to cover

    1. Intrinsic resistance

    2. antibiogram

    3. Exceptional phenotypes

  • INTRINSIC RESISTANCE

    Part One

  • Chromosomal

    (born with it)

    I

    N

    T

    R

    I

    N

    S

    I

    C

    R

    E

    S

    I

    S

    T

    A

    N

    C

    E

    resistance which is a characteristic of the species

    results?

    errors in identification or susceptibility testing

    drug should be used with caution

  • I

    N

    T

    R

    I

    N

    S

    I

    C

    R

    E

    S

    I

    S

    T

    A

    N

    C

    E

    Examples Organism Antibiotic resistance

    Enterobacteriaceae Vancomycin

    Gram-positive organism Aztreonam

    Klebsiella species Ampicillin

    Proteus mirabilis Nitrofurantoin Polymyxins

    Serratia marcescens Polymyxins

  • Livermore DM, et al. Interpretative reading: recognizing the unusual and inferring resistance mechanisms from resistance phenotypes.

    J Antimicrob Chemother. 2001 Jul 1;48(suppl 1):87 102

    I

    N

    T

    R

    I

    N

    S

    I

    C

    R

    E

    S

    I

    S

    T

    A

    N

    C

    E

  • I

    N

    T

    R

    I

    N

    S

    I

    C

    R

    E

    S

    I

    S

    T

    A

    N

    C

    E

    http://www.eucast.org/expert_rules/

    http://www.eucast.org/expert_rules/
  • ANTIBIOGRAM READING

    Part Two

  • Test susceptibility

    Infer resistance mechanism

    Interpret clinical susceptibility on the basis

    of the resistance mechanism

    A

    N

    T

    I

    B

    I

    O

    G

    R

    A

    M

    R

    E

    A

    D

    I

    N

    G

  • E

    X

    P

    E

    R

    T

    R

    U

    L

    E

    Species identification

    Antibiotic susceptibility

    REPORT

  • E

    X

    P

    E

    R

    T

    R

    U

    L

    E

    Species identification

    Antibiotic susceptibility

    Antibiogram interpretation

    REPORT

    deduce phenotype

    deduce biochemical resistance

    clinical relevance

    additional tests

    1. re-define susceptibility (categorical)

    2. deduce susceptibility to non-tested antibiotics

    3. clinical comments 4. clinical advice

  • Simple..

    Staphylococcus aureus

    Result: resistant to cefoxitin

    Infer: resistance mediated by mecA

    Interpret: resistant to all beta-lactams

    A

    N

    T

    I

    B

    I

    O

    G

    R

    A

    M

    R

    E

    A

    D

    I

    N

    G

  • More complicated..

    Enterobacteriaceae

    Result: tobramycin non-susceptible

    amikacin & gentamicin susceptible

    Infer: acquired -I enzyme

    Interpret: report amikacin as Intermediate

    A

    N

    T

    I

    B

    I

    O

    G

    R

    A

    M

    R

    E

    A

    D

    I

    N

    G

  • Escherichia coli

    A

    N

    T

    I

    B

    I

    O

    G

    R

    A

    M

    R

    E

    A

    D

    I

    N

    G

    Antibiotic Category

    Ampicillin R

    Amoxicillin-clavulanate S

    Piperacillin-tazobactam S

    Cephalothin R

    Ceftriaxone R

    Ceftazidime S

    Cefepime R

    Cefoxitin S

    Ertapenem S

    Gentamicin S

    Amikacin S

    Ciprofloxacin S

    Trimethoprim-sulfamethoxazole S

    Infer: Extended spectrum beta-lactamase (CTX-M) Interpret: Consider reporting ceftazidime as resistant OR Reporting presence of ESBL with comment

  • Klebsiella pneumoniae

    A

    N

    T

    I

    B

    I

    O

    G

    R

    A

    M

    R

    E

    A

    D

    I

    N

    G

    Infer: ampC enzyme (plasmid-acquired) Interpret: Consider reporting ceftriaxone as resistant

    Antibiotic Category

    Ampicillin R

    Amoxicillin-clavulanate R

    Piperacillin-tazobactam S

    Cephalothin R

    Ceftriaxone I

    Ceftazidime R

    Cefepime S

    Cefoxitin R

    Ertapenem S

    Gentamicin S

    Amikacin S

    Ciprofloxacin S

    Trimethoprim-sulfamethoxazole S

  • Limitations

    High complexity of resistance mechanisms

    Limited information about some mechanisms of resistance

    Multifactorial multiresistance

    Oversimplification interpretative

    Mistakes when deducing mechanisms of resistance

  • EXCEPTIONAL PHENOTYPE

    Part Three

  • Resistance in a species where resistance has not been seen or is rare

    may change with time

    may also be regional or national differences

    E

    X

    C

    E

    P

    T

    I

    O

    N

    A

    L

    P

    H

    E

    N

    O

    T

    Y

    P

    E

  • Resistance in a species where resistance has not been seen or is rare

    errors in identification or susceptibility testing

    send the isolate to a reference laboratory for independent confirmation

    E

    X

    C

    E

    P

    T

    I

    O

    N

    A

    L

    P

    H

    E

    N

    O

    T

    Y

    P

    E

  • Streptococcus pyogenes resistant to penicillin

    Staphylococcus aureus resistant to vancomycin

    resistant to any third-generation cephalosporin, carbapenems, and

    E

    X

    C

    E

    P

    T

    I

    O

    N

    A

    L

    P

    H

    E

    N

    O

    T

    Y

    P

    E

    Examples

  • Anaerobes resistant to metronidazole

    Neisseria gonorrhoeae resistant to third-generation cephalosporin

    Enterobacteriaceae resistant to carbapenems

    E

    X

    C

    E

    P

    T

    I

    O

    N

    A

    L

    P

    H

    E

    N

    O

    T

    Y

    P

    E

    Examples

  • HOW TO BE AN EXPERT

  • ICU patient 28 days in hospital oxidase negative non-fermentative Gram-

    negative bacillus

  • ICU patient 28 days in hospital oxidase negative non-fermentative Gram-

    negative bacillus

    Antibiotic Zone

    (mm)

    Result

    Amoxicillin-clavulanate 6 R

    Piperacillin-tazobactam 6 R

    Ceftriaxone 6 R

    Ceftazidime 26

    Cefepime 18

    Imipenem 6 R

    Ertapenem 6 R

    Meropenem 6 R

    Amikacin 6 R

    Gentamicin 6 R

    Ciprofloxacin 30

    Trimethoprim-

    sulfamethoxazole

    35

    What is the likely organism? How would you report

    susceptibility to: ceftazidime imipenem ciprofloxacin

  • Antibiotic Zone

    (mm)

    Result

    Amoxicillin-

    clavulanate

    6 R

    Cefoxitin 6 R

    Ceftriaxone 27 S

    Ceftazidime 26 S

    Cefepime 24 S

    Imipenem 24 S

    Ertapenem 23 S

    Meropenem 24 S

    Ciprofloxacin 25 S

    Trimethoprim-

    sulfamethoxazole

    20 S

    Enterobacter cloacae

    Isolate from blood culture Patient with suspected ventilator-

    associated pneumonia