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BIBLIOGRAPHY
Page | 181
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990). Basic local alignment
search tool. J. Mol. Biol. 215:403-410.
Anderson, JV, Morris CF, (2003). Purification and analysis of wheat grain polyphenol
oxidase (PPO) protein. Cereal Chem. 80: 135–143.
Anisimova M, Gascuel O, (2006). Approximate likelihood-ratio test for branches: A
fast, accurate and powerful alternative. Systems Biol. 55:539-552.
Aniszewski T, Lieberei R, Gulewicz K, (2008). Research on catecholases, laccases
and cresolases in plants. Recent progress and future needs. Acta. Biol. Cracov. Bot.
50: 7-18.
Armisen D, Lecharny A, Aubourg S. (2008). Unique genes in plants: specificities and
conserved features throughout evolution. BMC Evol. Biol. 8: 280.
Arnau J, Lauritzen C, Petersen GE, Pedersen J. (2006). Current strategies for the
use of affinity tags and tag removal for the purification of recombinant proteins.
Protein Expr Purif. 48: 1-13.
Asai, DJ. (2008). Immunofluorescence Microscopy. Current Protocols Essential
Laboratory Techniques. 9.2.1–9.2.21.
Asanuma M, Miyazaki I, Ogawa N. (2003). Dopamine- or L-DOPA-induced
neurotoxicity: the role of dopamine quinone formation and tyrosinase in a model of
Parkinson's disease. Neurotox Res. 5: 165-76.
Assavanig A, Amornkitticharoen B, Ekpaisal N, Meevootisom V, Flegel TW, (1992).
Isolation, characterization and function of laccase from Trichoderma,” Applied
Microbiology and Biotechnology, 38: 198–202.
Ausubel FM, Brent R, Kingston RE, Moore DD, Deidman JG, Smith JA, Struhl K,
editors (2003). Current Protocols in Molecular Biology. John Wiley & Sons, New
York.
***********
Bachem, CWB, Speckmann G, Linde PCG, Verheggen FTM, Hunt MD, Steffens JC,
Zabeau M. (1994). Antisense expression of polyphenol oxidase genes inhibits
enzymatic browning in potato tubers. Bio/Technology 12: 1101-5.
Bailey TL, Elkan C. (1995). The value of prior knowledge in discovering motifs with
MEME. Proc. Int. Conf. Intell. Syst. Mol. Biol. 3: 21–29.
Bajaj KL, Kaur G, Chadha ML, (1979). Glycoalkaloid content and other chemical
constituents of the fruits of some eggplant (Solanum melongena L.) varieties. Journal
of Plant Foods. 3:163-168.
Balasingam K. Ferdinand W. (1970). The purification and properties of a
Ribonucleoenzyme, o-diphenol oxidase, from potatoes. Biochem. J. 118: 15-23.
Baneyx F, Mujacic M. (2004). Recombinant protein folding and misfolding in
Escherichia coli. Nat Biotechnol. 22: 1399-408.
BIBLIOGRAPHY
Page | 182
Baneyx F. (1999). Recombinant protein expression in Escherichia coli. Curr Opin
Biotechnol. 10: 411-21.
Barrett DM, Lee CY, Li FW. (1991). Changes in the activity and subcellular
distribution of PPO In 'Delicious' apples during controlled atmosphere storage. J.
Food Biochemistry. 15: 185-199.
Bashan Y, Okon Y. Henis Y. (1987). Peroxidase, Polyphenoloxidase, and phenols
in relation to resistance against Pseudomonos syringae pv. tomato In Tomato
Plants. Can. J. Bot. 65: 366-372.
Baumgarten A, Cannon S, Spangler R, May G. (2003). Genome-level evolution of
resistance genes in Arabidopsis thaliana. Genetics 165: 309–319.
Beisker W, Dolbeare F, Gray JW. (1987). An improved immunocytochemical
procedure for high-sensitivity detection of incorporated bromodeoxyuridine.
Cytometry 8; 235-39.
Belasco J. Brawerman G. (1993). Control of Messenger RNA Stability, Academic
Press, San Diego, CA.
Bell AA. (1981). Biochemical mechanisms of disease resistance. Ann. Rev. Plant
Physiol. 32: 21-81.
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. (2005). GenBank.
Nucleic Acids Res 33: D34-D38.
Bernard V, Brunaud V, Lecharny A. (2010). TC-motifs at the TATA-box expected
position in plant genes: a novel class of motifs involved in the transcription
regulation. BMC Genomics. 11:166.
Bernhart SH, Hofacker IL, Will S, Gruber AR, Stadler PF. (2008). RNAalifold:
improved consensus structure prediction for RNA alignments. BMC Bioinformatics. 9:
474.
Bertrand G. (1896). Sur une nouvelle oxydase, ou ferment soluble oxidant, d’origine
végétale. Comt. Rend. Acad. Sci. Paris 122: 1215–17.
Bhonwong A, Stout MJ, Attajarusit J, Tantasawat P. (2009). Defensive role of tomato
polyphenol oxidases against cotton bollworm (Helicoverpa armigera) and beet
armyworm (Spodoptera exigua). J Chem Ecol. 35: 28–38.
Blanchette M, Tompa M. (2003). FootPrinter: A program designed for phylogenetic
footprinting. Nucleic Acids Res. 31: 3840-42.
Blanchette M, Tompa M. (2002). Discovery of regulatory elements by a
computational method for phylogenetic footprinting, Genome Res.12, 739-48.
Bordier C (1981). Phase separation of integral membrane proteins in Triton X-114
solution. J Biol Chem. 256:1604-7.
Boss PK, Gardner RC, Janssen BJ, Ross GS, (1995). An apple polyphenol oxidase
cDNA is up-regulated in wounded tissues. Plant Mol. Biol. 27:429-33.
BIBLIOGRAPHY
Page | 183
Bouchilloux S, Mcmahill P, Mason HS. (1963). The multiple forms of mushroom
tyrosinase. J. Biol. Chem. 238: 1699-1707.
Bradford MM. (1976). A rapid and sensitive method for the quantification of
microgram quantities of proteins utilizing the principle of protein-dye binding. Anal.
Biochem. 72: 248-54.
Bucheli CS, Dry IB, Robinson SP. (1996). Isolation of a full-length cDNA encoding
polyphenol oxidase from sugarcane, a C4 grass. Plant Mol Biol. 31: 1233-8.
Burton SG, (2003). Laccases and polyphenol oxidases in organic synthesis a review.
Current Org. Chem. 7: 1317–31.
***********
Cabanes J, Chazarra S, García-Carmona F. (1994). Kojic acid, a cosmetic skin
whitening agent, is slow-binding inhibitor of catecholase activity of tyrosinase. J.
Pharm. Pharmacol. 46: 982-5.
Carlson JM, Chakravarty A, DeZiel CE, Gross RH. (2007). SCOPE: a web server for
practical de novo motif discovery. Nucleic Acids Res. 35 (Web Server issue): W259-
64.
Carmack CS, McCue LA, Newberg LA, Lawrence CE. (2007). PhyloScan:
identification of transcription factor binding sites using cross-species evidence.
Algorithms Mol. Biol. 2: 1.
Cary JM, Lax AR, Flurkey, WH. (1992). Cloning and characterization of cDNAs
coding for Vicia faba polyphenol oxidase. Plant Mol. Biol. 20: 245–253.
Casado-Vela J, Selles S, Bru R. (2005). Purification and kinetic characterization of
polyphenol oxidase from tomato fruits (Lycopersicon esculentum cv. muchamiel). J
Food Biochem. 29: 381-401.
Casanola-Martin GM, Khan MTH, Marrero-Ponce Y, Ather A, Sultankhodzhaev MN,
Torrens F, (2006). New tyrosinase inhibitors selected by atomic linear indices-based
classification models. Bioorg. Med. Chem. Lett. 16: 324–30.
Castresana J, (2000). Selection of conserved blocks from multiple alignments for
their use in phylogenetic analysis. Mol. Biol. Evol. 17: 540-42.
Chen S, Songkumarn P, Liu J, Wang GL. (2009). A versatile zero background T-
vector system for gene cloning and functional genomics. Plant Physiol. 150: 1111–
21.
Cheriot SC, Billaud C, Nicolas J. (2006) Use of experimental design methodology to
prepare Maillard reaction products from glucose and cysteine inhibitors of polyphenol
oxidase from eggplant (Solanum melongena). J Agric. Food Chem. 54: 5120-6.
Chevalier T, de Rigal D, Mbéguié-A-Mbéguié D, Gauillard F, Richard-Forget, F, Fils-
Lycaon BR, (1999). Molecular cloning and characterization of apricot fruit polyphenol
oxidase. Plant Physiol. 119: 1261–9.
BIBLIOGRAPHY
Page | 184
Cho M-H, Moinuddin SGS, Helms GL, Hishiyama S, Eichinger D, Davin LB, et al.,
(2003). (+)-Larreatricin hydroxylase, an enantiospecific polyphenol oxidase from the
creosote bush (Larrea tridentata). Proc. Nat. Acad. Sci. USA 100: 10641–46.
Chomczynski P, Sacchi N. (1987). Single-step method of RNA isolation by acid
guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochem. 162:
156–159
Christopher ME, Miranda M, Major IT, Constabel CP, (2004). Gene expression
profiling of systemically wound-induced defenses in hybrid poplar. Planta 219: 939–
947.
Clark, R. M., G. Schweikert, C. Toomajian, S. Ossowski, G. Zeller et al., 2007
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.
Science 317: 338–342.
Claus H, Decker H. (2006). Bacterial tyrosinases. Syst. Appl. Microbiol. 29: 3-14.
Coetzer C, Corsini D, Love S, Pavek J, Tumer N. (2001). Control of enzymatic
browning in potato (Solanum tuberosum L.) by sense and antisense RNA from
tomato polyphenol oxidase. J Agric. Food Chem. 49: 652-7.
Concellón A, Añón MC, Chaves AR. (2004). Characterization and changes in
polyphenol oxidase from eggplant (Solanum melongena L.) during storage at low
temperature. Food Chem. 88: 17-24.
Constabel CP, Bergey DR, Ryan CA. (1995). Systemin activates synthesis of wound-
inducible tomato leaf polyphenol oxidase via the octadecanoid defense signaling
pathway. Proc Natl Acad Sci. USA 92: 407–11.
Constabel CP, Ryan CA. (1998). A survey of wound- and methyl jasmonate-induced
leaf polyphenol oxidase in crop plants. Phytochemistry 47: 507–511.
Constabel CP, Yip L, Patton JJ, Christopher ME. (2000). Polyphenol oxidase from
hybrid poplar. Cloning and expression in response to wounding and herbivory. Plant
Physiol. 124: 285–95.
Constantinides SM, Bedford, CL (1967). Multiple forms of phenoloxidase. J. Food
Sci. 32: 446-50.
Cory JG, Frieden E. (1967). Differential reactivities of tyrosine residues of proteins
to tyrosinase. Biochemistry 6: 121-6.
Cowan MM, Horst EA, Luengpailin S, Doyle RJ. (2000). Inhibitory effect of plant
polyphenoloxidase on colonization factors of Streptococcus Sobrinus 6715.
Antimicrob. Agents Chemot. 44: 2578-80.
Cuff ME, Miller KI, van Holde KE, Hendrickson WA (1998). Crystal structure of a
functional unit from Octopus hemocyanin. J Mol. Biol. 278: 855–70.
Curtis D, Lehmann R, Zamore PD. (1995). Translational regulation in development .
Cell 81: 171–8.
***********
BIBLIOGRAPHY
Page | 185
Dalfard AB, Khajeh K, Soudi MR, Naderi-Manesh H, Ranjbar B, Sajedi RH. (2006).
Isolation and biochemical characterization of laccase and tyrosinase activities in a
novel melanogenic soil bacterium. Enzym Microb Tech. 39: 1409-16.
Danan S, Veyrieras JB, Lefebvre V. (2011). Construction of a potato consensus map
and QTL meta analysis offer new insights in the genetic architecture of late blight
resistance and plant maturity traits. BMC Plant Biology 11: 16.
Das JR, Bhat SG, Gowda LR. (1997). Purification and characterization of a
polyphenol oxidase from the kew cultivar of Indian pineapple fruit. J. Agric. Food
Chem. 45: 2031-5.
Daunay MC (2008). Eggplant. In: Handbook of Plant Breeding, Vegetables II:
Fabaceae, Liliaceae, Solanaceae, and Umbelliferae, vol. 2. New York: Springer.
pp. 163-220.
Daunay MC, Janick J. (2007). History and iconography of eggplant. Chronica
Horticulturae 47: 16–22.
Daunay MC, Lester RN Laterrot H. (1991). The use wild species for the genetic
improvement of brinjal (Solanum melogeana) and tomato (Lycopersicon
esculentum). In Solanaceae III: Taxonomy, Chemistry, Evolution (eds Hawkes, JG,
Lester RN, Nee M, Erstrader N.), Royal Botanic Garden, Kew, Richmond, UK, 1991,
pp. 380-412.
Daunay MC, Lester RN, Gebhardt C, Hennart JW, Jahn M. (2001). Genetic
resources of eggplant (Solanum melongena) and allied species: a new challenge for
molecular geneticists and eggplant breeders. In: van den Berg RG, Barendse GW,
van der Weerden GM, Mariani C, eds. Solanaceae V: advances in taxonomy and
utilization. Nijmegen: Nijmegen University Press, 251–274.
Dawley RM, Flurkey WH, (2003). Differentiation of tyrosinase and laccase using
hexylresorcinol, a tyrosinase inhibitor. Phytochemistry 33: 281–284.
Dawley, R.M. And Flurkey, W.H. (1993). Differentiation of tyrosinase and laccase
using 4-hexylresorcinol, a tyrosinase inhibitor. Phytochemistry 33: 281-284
Decker CJ. Parker R. (1994). Mechanisms of mRNA degradation in eukaryotes
Trends Biochem. Sci. 19: 336 – 340.
Decker H, Schweikardt T, Tuczek F (2006). The first crystal structure of tyrosinase:
All questions answered? Angew Chem Int Ed. 45: 4546–50.
Decker H, Tuczek F. (2000). Tyrosinase/catecholoxidase activity of hemocyanins:
structural basis and molecular mechanism. Trends Biochem Sci. 25: 392-7.
Demeke T, Morris CF, (2002). Molecular characterization of wheat polyphenol
oxidase (PPO). Theor. Appl. Genet. 104: 813–818.
Decker H, Schweikardt T, Nillius D, Salzbrunn U, Jaenicke E, Tuczek F. (2007).
Similar enzyme activation and catalysis in hemocyanins and tyrosinases. Gene. 398:
183-91.
BIBLIOGRAPHY
Page | 186
Demeke T, Morris CF, Campbell KG, King GE, Anderson JA, Chang H-G. (2001).
Wheat polyphenol oxidase: distribution and genetic mapping in three inbred line
populations. Crop Sci. 41: 1750–7.
Dereeper A, Guignon V, Blanc G, Audic S,Buffet S, Chevenet F, Dufayard J-F,
Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O. (2008). Phylogeny.fr: robust
phylogenetic analysis for the non-specialist. Nucl. Acids Res 36: W465-W469.
Des Marais DL, Rausher MD. (2008). Escape from adaptive conflict after duplication
in an anthocyanin pathway gene. Nature 454: 762–765.
Devos KM, Gale M. (2000). Genome relationships: the grass model in current
research. The Plant Cell 12, 637–46.
Dhamdhere S, Dhamdhere SV, Matur R, (1995). Occurrence and succession of
pests of brinjal, Solanum melongena L. at Gwalior (M.P.), Indian J Ent. Res. 19: 71-
77.
Dietler C, Lerch K. (1982). Reaction inactivation of tyrosinase. In oxidases and
related redox systems, (King TE, Mason HS, Morrison M, Eds.) Pp. 305-17,
Pergamon Press, New York.
Diezel C, von Dahl CC, Gaquerel E, Baldwin IT. (2009). Different lepidopteran
elicitors account for cross-talk in herbivory-induced phytohormone signaling. Plant
Physiol. 150: 1576–86.
Diezel C, Kessler D, Baldwin IT. (2011). Pithy protection: Nicotiana attenuata's
jasmonic acid-mediated defenses are required to resist stem-boring weevil larvae.
Plant Physiol. 155: 1936–46.
Do CB, Mahabhashyam MS, Brudno M, Batzoglou S. (2005). ProbCons: Probabilistic
consistency-based multiple sequence alignment. Genome Res. 15: 330-40.
Doan AT, Ervin G, Felton G, (2004). Temporal effects of jasmonate induction of anti-
herbivore defense in Physalis angulata: seasonal and ontogenetic gradients.
Biochem. Syst. Ecol. 32: 117–126.
Doares SH, Syrovets T, Weiler EW, Ryan CA. (1995a). Oligogalacturonides and
chitosan activate plant defensive genes through the octadecanoid pathway. Proc
Natl. Acad Sci. USA 92: 4095–8.
Doares SH, Narváez-Vásquez J, Conconi A, Ryan CA. (1995b). Salicylic acid inhibits
synthesis of proteinase inhibitors in tomato leaves induced by systemin and jasmonic
acid. Plant Physiol. 108: 1741–6.
Dogăn M, Arslan O, Dogăn S. (2002). Substrate specificity, heat inactivation and
inhibition of polyphenol oxidase from different aubergine cultivars. Int. J Food Sci.
Technol. 37: 415–23.
Dogan S, Arslan O, Ozen F, (2005a). The polyphenol oxidase activity of oregano at
different stages. Food Chem. 91: 341–345.
BIBLIOGRAPHY
Page | 187
Dogan S, Turan Y, Erturk H, Arslan O. (2005b). Characterization and purification of
polyphenol oxidase from artichoke (Cynara scolymus L.). J. Agric. Food Chem. 53,
776–85.
Dogan S, Turan P, Dogan M, Arslan O, Alkan M. (2005c). Purification and
characterization of Ocimum basilicum L. polyphenol oxidase. J Agric Food Chem. 53:
10224-30
Doganlar S, Fary A, Daunay MC, Lester RN. (2002). A comparative genetic linkage
map of eggplant (Solanum melongena) and its implication for genome evolution in
the Solanaceae., Department of Plant Breeding and Department of Plant Biology,
Cornell University, Ithaca, New York
Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD. (2002a). A comparative
genetic linkage map of eggplant (Solanum melongena) and its implications for
genome evolution in the Solanaceae. Genetics. 161: 1697–1711.
Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD. (2002b) Conservation of
gene function in the Solanaceae as revealed by comparative mapping of
domestication traits in eggplant. Genetics. 161: 1713–26.
Donaldson, JG. (2001). Immunofluorescence Staining. Current Protocols in Cell
Biology. 4.3.1– 4.3.6.
Dırnenburg H, Knorr D. (2001). Evaluation of elicitor- and high pressure-induced
enzymatic browning utilizing potato (Solanum tuberosum) suspension cultures as a
model system for plant tissues. J. Agric. Food Chem. 45: 4173–7.
Dry I, Robinson SP, (1994). The molecular cloning and characterization of grape
berry polyphenol oxidase. Plant Mol. Biol. 26: 495–502.
Duarte JM, Cui L, Wall PK, Zhang Q, Zhang X, Leebens-Mack J, Ma H, Altman N,
dePamphilis CW. 2006. Expression pattern shifts following duplication indicative of
subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol. 23: 469–78.
Duran N, Rosa MA, D'Annibale A, Gianfreda L. (2002). Applications of laccases and
tyrosinases (phenoloxidases) immobilized on different supports: a review. Enz.
Microb Tech. 31: 907-31.
***********
Edwards W, Bownes R, Leukes WD, Jacobs EP, Sanderson R, Rose PD, Burton
SG. (1999). A capillary membrane bioreactor using immobilized polyphenol oxidase
for the removal of phenols from industrial effluents. Enzyme and Microbial
Technology 24: 209-217.
Eicken C, Zippel F, Büldt-Karentzopoulos K, Krebs B. (1998). Biochemical and
spectroscopic characterization of catechol oxidase from sweet potatoes (Ipomoea
batatas) containing a type-3 dicopper center. FEBS Lett. 436:293-9.
BIBLIOGRAPHY
Page | 188
Eicken C. Krebs B, Sacchettini JC. (1999) Catechol oxidase - Structure and activity.
Curr. Opin Struct Biol. 9:677-83.
Emanuelsson O, Nielsen H, von Heijne G. (1999). ChloroP, a neural network-based
method for predicting chloroplast transit peptides and their cleavage sites. Protein
Sci 8: 978–84.
Endo K, Hayashi Y, Hibi T, Hosono K, Beppu T, Ueda K. (2003). Enzymological
characterization of EpoA, a laccase-like phenol oxidase produced by Streptomyces
griseus. J. Biochem. 133: 671-7.
Escribano J, Gandía-Herrero F, Caballero N, Pedreño MA. (2002). Subcellular
localization and isoenzyme pattern of peroxidase and polyphenol oxidase in beet
root (Beta vulgaris L.). J Agric Food Chem. 50: 6123-9.
Espin JC, Wichers HJ. (1999). Slow-binding inhibition of mushroom (Agaricus
bisporus) tyrosinase isoforms by tropolone. J Agric Food Chem. 47: 2638-2644.
***********
FAO. (2012). FAOSTAT Statistical Database. http://faostat.fao.org/faostat/
collections? Subset: agriculture. Accessed on 15 April 2012.
Flagel L, Udall J, Nettleton D, Wendel J. (2008). Duplicate gene expression in
allopolyploid Gossypium reveals two temporally distinct phases of expression
evolution. BMC Biology 6: 16.
Flurkey WH, Inlow JK. (2008). Proteolytic processing of polyphenol oxidase from
plants and fungi. J Inorg Biochem. 102: 2160-2170.
Flurkey WH, Jen JJ. (1980). Purification of peach polyphenol oxidase in the
presence of added protease inhibitors. J. Food biochemistry 4: 29-41
Flurkey WH. (1986). Polyphenoloxidase In Higher Plants. Plant Physiol. 81, 614-18
Flurkey WH. (1990). Electrophoretic and molecular weight anomalies associated with
broad bean polyphenoloxidase in SDS-PAGE electrophoresis. Phytochemistry 29:
387-91.
Flurkey, WH. (1985). In vitro biosynthesis of Vicia Faba polyphenoloxidase. Plant
Physiol. 79: 564-7.
Force A, Lynch M, Pickett FB, Amores A, Yan Y-L, Postlethwait J. (1999).
Preservation of duplicate genes by complementary, degenerative mutations.
Genetics 151: 1531–45.
Fraignier M, Marques L, Fleuriet A, Macheix J. (1995). Biochemical and
immunochemical characteristics of polyphenol oxidase from different fruits of
prunus. J. Agric. Food Chem. 43: 2375-80.
Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. (2008) Many or most
genes in Arabidopsis transposed after the origin of the order Brassicales. Genome
Res. 18: 1924–37
BIBLIOGRAPHY
Page | 189
Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. (2008). Many or most
genes in Arabidopsis transposed after the origin of the order Brassicales. Genome
Res. 18: 1924 –37.
Fujita S, Saari NB, Maegawa M, Tetsuka T, Hayashi N, Tono T. (1995). Purification
and properties of polyphenol oxidase from cabbage (Brussicu Oleraceu L.). J. Agric.
Food Chem. 43, 1138-42.
Fujita S, Tono T. (1988). Purification and some properties of polyphenoloxidase in
eggplant (Solanum melongena). J Sci Food Agric 46: 115-123.
Fujita, S, Saari NB, Maegawa M, Samura N, Hayashi N. Tono T. (1997). Isolation
and characterization of two phloroglucinol oxidases from cabbage (Brussica
Oleraceu L.). J. Agric. Food Chem. 45: 59-63
Furuichi Y, Shatkin AJ. (1989). Characterization of cap structures. Methods
Enzymol. 180: 164–177.
**********
Gamboa PM, Sanchez-Monge R, Diaz-Perales A, Salcedo G, Ansotegui J, Sanz ML.
(2005). Latex-vegetable syndrome due to custard apple and aubergine: new
variations of the hevein symphony. J Investig Allergol Clin Immunol 15: 308-311.
Gandía-Herrero F, García-Carmona F, Escribano J. (2004). Purification and
characterization of a latent polyphenol oxidase from beet root (Beta vulgaris L.) J
Agric Food Chem. 52: 609-15.
Gandia-Herrero F, Escribano J, Garcia-Carmona F. (2005a). Characterization of the
monophenolase activity of tyrosinase on betaxanthins: the tyramine-
etaxanthin/dopamine-betaxanthin pair. Planta 222: 307–316.
Gandia-Herrero F, Jiménez-Atiénzar M, Garcia-Carmona F, Escribano J, (2005b).
Evidence of a common regulation in the activation of a polyphenol oxidase by trypsin
and sodium dodecyl sulfate. Biol. Chem. 386, 601–607.
Ganesha C, Fox MT, Flurkey WH, (1992). Microheterogeneity in purified broad bean
polyphenol oxidase. Plant Physiol. 98: 472-79.
Gerdemann C, Eicken C, Galla H-J, Krebs B, (2002). Comparative modeling of the
latent form of catechol oxidase using a molluskan hemocyanin structure. J. Inorg.
Biochem. 89: 155–8.
Gerdemann C, Eicken C, Krebs B (2002). The crystal structure of catechol oxidase:
New insight into the function of type-3 copper proteins. Acc Chem Res. 35:183–191.
Gerdemann C, Eicken C, Magrini A, Meyer HE, Rompel A, Spener F, Krebs B
(2001). Isozymes of Ipomoea batatas catchol oxidase differ in catalase-like activity.
Biochim. Biophys. Acta 1548: 94–105
BIBLIOGRAPHY
Page | 190
Goldbeck JH, Cammarata KV. (1981). Spinach thylakoid polyphenol oxidase.
isolation, activation, and properties of the native chloroplast enzyme. Plant Physiol.
67: 977-984.
Goldman MHS, Seurinck J, Marins M, Goldman GH, Marian C. (1998). A tobacco
flower-specific gene encodes a polyphenol oxidase. Plant Mol. Biol. 36: 479–485.
Goodenough PWK, Essell S, Lea AGH, Loeffler T. (1983). Mono- and diphenolase
activity from fruit of Mulus pumilu. Phytochemistry 22: 359-363.
Gooding PS, Bird C, Robinson SP, (2001). Molecular cloning and characterization of
banana fruit polyphenol oxidase. Planta 213:748–757.
Gopalan C, Rama Sastri BV, Balasubramanian S. (2007). Nutritive value of Indian
foods, published by National Institute of Nutrition (NIN), ICMR, Hyderabad.
Gubesch M, Theler B, Dutta M, Baumer B, Mathis A, Holzhauser T, et al. (2007).
Strategy for allergenicity assessment of ‘natural novel foods’: clinical and molecular
investigation of exotic vegetables (water spinach, hyacinth bean and Ethiopian
eggplant). Allergy 62, 1243-50.
Guindon S, Gascuel O. (2003). A simple, fast, and accurate algorithm to estimate
large phylogenies by maximum likelihood. Systems Biol. 52: 696-704.
Gupta G, Sinha S, Mitra N, Surolia A (2009). Probing in to the role of conserved N-
glycosylation sites in the tyrosinase glycoprotein family. Glycoconj J. 26: 691–695
**********
Ha M, Kim E-D, Chen ZJ. (2009). Duplicate genes increase expression diversity in
closely related species and allopolyploids. Proc Natl Acad Sci. USA 106: 2295–300.
Halaouili S, Asther M, Sigoillot J.-C, Hamdi M, Lomascolo A. (2006). Fungal
tryrosinases: new prospects in molecular characteristics, bioengineering and
biotechnological applications. J. Appl. Microbiol. 100: 219–32.
Halaouili S, Asther Mi, Kruus K, Guo L, Hamdi M, Sigoillot J-C, et al., (2005).
Characterization of a new tyrosinase from Pycnoporus species with high potential for
food technological applications. J. Appl. Microbiol. 98: 332–43.
Hanahan D. (1983). Studies on transformation of Escherichia coli with plasmids. J
Mol Biol. 166: 557-80.
Hare J.H, Walling LI, (2006). Constitutive and jasmonate-inducible traits in Datura
wrightii. J. Chem. Ecol. 32: 29–47.
Harel E, Mayer AM, Shain Y. (1965). Purification and multiplicity of catechol oxidase
from apple chloroplasts. Phytochemistry 4: 783-790.
Harel E, Mayer AM. (1968). Interconversion of sub-units of catechol oxidase from
apple chloroplasts. Phytochemistry 7: 199-204.
BIBLIOGRAPHY
Page | 191
Harel E, Mayer AM, Lehman E. (1973). Multiple forms of Vitis Vinifiera catechol
oxidase. Phytochemistry 12, 2649-54.
Harish Babu BN, Mahesh PA, Venkatesh YP. (2008). A cross-sectional study on the
prevalence of food allergy to eggplant (Solanum melongena L.) reveals female
predominance. Clin Exp Allergy. 38: 1795-802
Harish Babu BN, Venkatesh YP, (2009). Clinico-immunological analysis of eggplant
(Solanum melongena) allergy indicates preponderance of allergens in the peel.
WAO Journal 2:192-200.
Harlow E, Lane D. (1988). Antibodies: A laboratory manual. Cold Spring Harbour
Laboratory Press, Cold Spring Harbour, New York.
Haruta M, Murata M, Kadokura H, Homma S. (1999). Immunological and molecular
comparison of polyphenol oxidase in Rosaceae fruit trees. Phytochemistry. 50:102-5.
Haruta, M., Murata, M., Hiraide, A., Kadokura, H., Yamasaki, M., Sakuta, M.,
Shimizu, S. Homma, S. (1998). Cloning Genomic DNA encoding apple polyphenol
oxidase and comparison of the gene product in Escherichia Coli and in apple.
Biosci. Biotechnol. Biochem. 62: 358-62.
Haruta M, Pedersen JA, Constabel CP. (2001). Polyphenol oxidase and herbivore
defense in trembling aspen (Populus tremuloides): cDNA cloning expression and
potential substrates. Physiol. Plant. 112: 552–8.
He XY, He ZH, Zhang LP, Sun DJ, Morris CF, Fuerst EP, Xia XC. (2007). Allelic
variation of polyphenol oxidase (PPO) located onchromosome 2A and 2D and
development of functional markers for the PPO genes in common wheat. Theo. Appl
Genet.115: 47–58.
Heimdal H, Larsen LM, Poll L. (1994). Characterization of polyphenol oxidase from
photosynthetic and vascular lettuce tissues (Lactucu Saliva). J. Agric. Food. Chem.
42: 1428-33.
Hernandez-Romero D, Snachez-Amat A, Solano F. (2006). A tyrosinase with an
abnormally high tyrosine hydroxylase/dopa oxidase ratio. Role of the seventh
histidine and accessibility to the active site. FEBS J. 273: 257–70.
Herr, AJ, Jensen MB, Dalmay T, Baulcombe DC. (2005). RNA polymerase IV
directs silencing of endogenous DNA. Science 308: 118 – 120.
Higo K, Ugawa Y, Iwamoto M, Korenaga T. (1999). Plant cis-acting regulatory DNA
elements (PLACE) database: 1999. Nucleic Acids Res. 27: 297–300.
Himi E, Noda K. (2004). Structural variation of SSPPO genes related to flour color in
A-, B-, and D-genome of wheat. Breeding Research 6: 119.
Himmelwright RS, Eickman NC, Lubien CD, Lerch K, Solomon EI. (1980). Chemical
and spectroscopic studies of the binuclear copper active site of neurospora
tyrosinase: comparison to hemocyanins. J. Am. Chem. Soc. 102: 7339-44.
BIBLIOGRAPHY
Page | 192
Hind G, Marshak DR, Coughlan SJ. (1995). Spinach thylakoid polyphenol oxidase:
cloning, characterization, and relation to a putative protein kinase. Biochemistry 34,
8157-8154.
Ho K-K, (1999) Characterization of polyphenol oxidase from aerial roots of an orchid
(Aranda’ Christine 130). Plant Physiol. Biochem. 37, 841–8.
Hofman F. (2002). Immunohistochemistry. Current Protocols in Immunology. 49:
21.4.1–21.4.23.
Homma S. (1998). Cloning genomic DNA encoding apple polyphenol oxidase and
comparison of the gene product in Escherichia coli and in apple. Biosci. Biotechnol
Biochem. 62: 358-62.
Howe GA, (2004) Jasmonates as signals in the wound response. J. Plant Growth
Regul. 23: 223–37.
Hu J, Yang YD, Kihara D. (2006). EMD: an ensemble algorithm for discovering
regulatory motifs in DNA sequences. BMC Bioinformatics. 7: 342.
Huber M, Hintermann G, Lerch K. (1985). Primary structure of tyrosinase from
Streptomyces glaucescens. Biochemistry 24: 6038-44.
Hunt AG. (2007). Messenger RNA 3′-end formation and the regulation of gene
expression. In Regulation of Gene Expression in Plants (C.L. Bassett Ed.). Springer,
New York. pp. 101 – 122.
Hunt MD, Eannetta NT, Yu H, Newman SM, Steffens JC (1993). cDNA cloning and
expression of potato polyphenol oxidase. Plant Mol Biol. 21: 59–68
Hüttermann A, Mai C, Kharazipour A. (2001).Modification of lignin for the production
of new compounded materials. Appl Microbiol Biotechnol. 55: 387-94.
**********
Imanishi S, Nakakita M, Yamashita K, Furuta A, Utsuno K, Muramoto N, et al.
(2000). Aspirin and salicylic acid do not inhibit methyl jasmonate-inducible
expression of a gene for ornithine decarboxylase in tobacco BY-2 cells. Biosci
Biotechnol Biochem 64: 125–33.
Inoue T, Shiota Y, Yoshizawa K. (2008). Quantum chemical approach to the
mechanism for the biological conversion of tyrosine to dopaquinone. J. Am. Chem.
Soc. 130: 16890–7.
Interesse FS, Ruggiero P, D'avella G, Lamparelli F. (1980). Partial purification of
some properties of wheat (triticum aestivum) o-diphenolase. J. Sci. Food Agric. 31:
459-66.
Ito S, Wakamatsu K. (2006). Chemistry of melanins. In the pigmentary system.
physiology and pathophysiology, Nordlund JJ, Boissy RE, Hearing VJ, King RA,
Oetting WS, Ortonne JP. eds. 2nd edn. (Malden, MA: Wiley-Blackwell), 282–310.
**********
BIBLIOGRAPHY
Page | 193
Jackson, I.J. (1988). A cDNA encoding tyrosinase-related protein maps to the brown
locus in mouse. Proc. Natl Acad. Sci. USA 85, 4392–6.
Jaenicke E, Decker H, (2003). Tyrosinases from crustaceans form hexamers.
Biochem. J. 371, 515–523.
Jefferson RA, Kavanagh TA, Bevan MW. (1987). GUS fusions: beta-glucuronidase
as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6:3901–7.
Jelesko, JG, Harper R, Furuya M, Gruissem W. (1999). Rare germinal unequal
crossing-over leading to recombinant gene formation and gene duplication in
Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96: 10302–7.
Jimenez M, Dubcosky J, (1999). Chromosome location of genes affecting polyphenol
oxidase activity in seeds of common and durum wheat. Plant Breeding 118: 395–
398.
Jimenez M, Garcia-Carmona, F. (1999). Oxidation of the flavonol quercetin by
polyphenol oxidase. J. Agric. Food Chem. 47: 56-60.
Jimenez M. Garcia-Carmona F. (1996). The effect of sodium dodecyl sulphate on
polyphenol oxidase. Phytochemistry 42: 1503-9.
Joshi CP, Zhou H, Huang XQ, Chiang VL (1997). Context sequences of translation
initiation codon in plants. Plant Mol. Biol. 35: 993–1001.
Joy IV RW, Sugiyama M, Fukuda M, Komamine A. (1995). Cloning and
characterization of polyphenol oxidase cDNAs of Phytolacca americana. Plant
Physiol. 107: 1083–9.
Jukanti AK, Bruckner PL, Fischer AM. (2004). Evaluation of wheat polyphenol
oxidase genes. Cereal Chem. 81: 481–485.
Kahn V, (1995). Multiple effects of maltol and kojic acid on enzymatic browning. In:
Lee, C.Y., Whitaker, J.R. (Eds.), (1995). Enzymatic Browning and its Prevention,
ACS Symposium Series 600. American Chemical Society, Washington, DC, pp.
277–294.
**********
Kahn V. Andrawis A. (1985). Inhibition of mushroom tyrosinase by tropolone.
Phytochemistry 24: 905-8.
Kalloo G, Baswana K, Sharma NK, (1990). Heat tolerance in eggplant (Solanum
melongena). XXIII Intern. Hortic. Congr. Florence, Itlay, Abst. 1204.
Kanade SR, Paul B, Rao AGA, Gowda LR, (2006). The conformational state of
polyphenol oxidase from field bean (Dolichos lablab) upon SDS and acid pH
activation. Biochem. J. 395: 551–62.
Kanade SR, Rao DH, Hegde RN, Gowda LR, (2009). The unique enzymatic function
of field bean (Dolichos lablab) D-galactose specific lectin: a polyphenol oxidase.
Glycoconj. J. 26: 535-545.
BIBLIOGRAPHY
Page | 194
Kanazawa A, O’Dell M, Hellens RP, Hitchin E, Metzlaff M. (2000). Mini-scale
method for nuclear run-on transcription assay in plants. Plant Mol. Biol. Rep. 18;
377-83
Kanhere A, Bansal M (2005). Structural properties of promoters: similarities and
differences between prokaryotes and eukaryotes. Nucleic Acids Res. 33: 3165-75.
Kanno T, Huettel B, Mette MF, Aufsatz W, Jaligot E, Daxinger L, Kreil DP, Matzke
M, Matzke AJ. (2005). Atypical RNA polymerase subunits required for RNA-directed
DNA methylation. Nature Genet. 37: 761–65.
Karban R, Baldwin IT, Baxtere KJ, Laue G, Felton GW. (2000). Communication
between plants: induced resistance in wild tobacco plants following clipping
neighbouring sagebrush. Oecologia 125: 66–71.
Keilin D, Mann T, (1938). Polyphenol oxidase: purification, nature and properties.
Proc. R. Soc. Lond. Ser. B 125: 187–205.
Khan KM, Maharvi GM, Khan MTH, Shaikh AJ, Perveen S, Begum S, et al. (2006)
Tetraketones: a new class of tyrosinase inhibitors. Bioorg. Med. Chem. 14, 344–51.
Khatib S, Nerya O, Musa R, Shmuel M, Tamir S, Vaya J. (2005). Chalcones as
potent tyrosinase inhibitors: the importance of a 2, 4-substituted resorcinol moiety.
Bioorg. Med. Chem. 13, 433–41.
Kim YJ, Uyama H. (2005). Tyrosinase inhibitors from natural and synthetic sources:
structure, inhibition mechanism and perspective for the future. Cell. Mol. Life Sci. 62:
1707-1723.
Kim JY, Seo YS, Kim JE, Sung et al. (2001). Two polyphenol oxidases are
differentially expressed during vegetative and reproductive development and in
response to wounding in the Fuji apple. Plant Sci. 161: 1145-52.
Klabunde T, Eicken C, Sacchettini JC, Krebs B, (1998). Crystal structure of a plant
catechol oxidase containing a dicopper center. Nature Struct. Biol. 5: 1084–90.
Koornneef A, Pieterse CM. (2008). Cross talk in defense signaling. Plant Physiol.
2008; 146: 839–44.
Koschorreck K, Richter SM, Ene AB, Roduner E, Schmid RD, Urlacher VB. (2008).
Cloning and characterization of a new laccase from Bacillus licheniformis catalyzing
dimerization of phenolic acids. Appl. Microb. Biotech. 79: 217-224.
Koussevitzky S, Néeman E, Harel E. (2004). Import of polyphenol oxidase by
chloroplast is enhanced by methyl jasmonate. Planta 219; 412–19.
Koussevitzky S, Néeman E, Sommer A, Steffens JC, Harel E. (1998). Purification
and properties of a novel chloroplast stromal peptidase. J. Biol. Chem. 273: 27064-
9.
BIBLIOGRAPHY
Page | 195
Koussevitzky, S., Néeman, E., Peleg, S. and Harel, E. (2008). Polyphenol oxidase
can cross thylakoids by both the Tat and the Sec-dependent pathways: a putative
role for two stromal processing sites. Physiologia Plantarum, 133: 266–77.
Kowalski SP, Eannetta NT, Hirzel AT, Steffens JC. (1992). Purification and
characterization of polyphenol oxidase from glandular trichomes of solanum
berthaultii. Plant Physiol. 100: 677-84.
Kozak M. (1986). Point mutations define a sequence flanking the AUG initiator
codon that modulates translation in eukaryotes. Cell 44: 283 – 92.
Kozak M. (1989). The scanning model for translation: an update. J. Cell Biol. 108:
229 –41.
Kozak M. (1991). Structural features in eukaryotic mRNAs that modulate the
initiation of translation. J. Biol. Chem. 266: 19867–70.
Kozak M. (1999). Initiation of translation in prokaryotes and eukaryotes. Gene 234:
187–208.
Krishnamoorthy V Kumar N Angappan K Soorianathasundaram K (2004).
Evaluation of new banana hybrids against black leaf streak disease. Infomusa 13,
25-27.
Kruzmane D, Jankevica L, Ievinsh G, (2002). Effect of regurgitant from Leptinotarsa
decemlineata on wound responses in Solanum tuberosum and Phaseolus vulgaris.
Physiol. Plant. 115: 577–84.
Kubo I, Kinst-Hori I, Chaudhuri SK, Sanchez Y, Ogura T. (2000). Flavonols from
Heterotheca inuloides: tryrosinase inhibitory activity and structural criteria. Biorg.
Med. Chem. 8: 1749–55.
Kubowitz F. (1937). Chemical composition of the potato oxidase. Chem. Abst. 31:
7904.
Kunamneni A, Plou FJ, Ballesteros A, Alcalde M. (2008). Laccases and their
applications: a patent review. Recent Pat Biotechnol. 2: 10-24.
Kuwabara T, (1995) The 60 kDa precursor to the dithiothreitol-sensitive tetrameric
protease of spinach thylakoids: structural similarities between the protease and
polyphenol oxidase. FEBS Lett. 371: 195–8.
Kuwabara T, Katoh Y, (1990). Involvement of the binuclear copper site in the
proteolytic activity of polyphenol oxidase. Plant Cell Physiol. 40: 1029–35.
Kuwabara T, Masuda T, Aizawa S, (1997). A dithiothreitol-sensetive tetrameric
protease from spinach thylakoids has polyphenol oxidase activity. Plant Cell Physiol.
38: 179–187.
Kwon DY, Kim WY, (1996). Purification of the glycosylated polyphenol oxidase from
potato tuber. J. Biochem. Mol. Biol. 29, 163-8.
**********
BIBLIOGRAPHY
Page | 196
Laemmli UK, (1970). Cleavage of structural proteins during the assembly of the head
of bacteriophage T4. Nature 227: 680-5.
Lai EC. (2002). Micro RNAs are complementary to 3′ UTR sequence motifs that
mediate negative post-transcriptional regulation. Nature Genet. 30: 363–364.
Lanker T, Flurkey WH, Hughes J. (1988). Cross-reactivity of polyclonal and
monoclonal antibodies to polyphenoloxidase in higher plants. Phytochemistry. 27:
3731-34
Lawande KF, Chavan JK. Eggplant (Brinjal). (2004). In: Salunkhe DK, Kadam SS,
eds. Le Bourvellec C, Le Quere J-M, Sanoner P, Drilleau J-F, Guyot S. Inhibition of
apple polyphenol oxidase activity by procyanidins and polyphenol oxidation products.
J. Agric. Food Chem. 52: 122–33.
Laveda F, Nuñez-Delicado E, García-Carmona F, Sánchez-Ferrer A. (2000).
Reversible sodium dodecyl sulfate activation of latent peach Polyphenol oxidase by
cyclodextrins. Arch. Biochem. Biophys. 379: 1-6.
Lax AR, Cary JW. (1995). Biology and molecular biology of polyphenol oxidase. In:
Lee, C.Y., and Whitaker, J.R.(eds). Enzymatic browning and its prevention.
American Chemical Society, Washington, D.C. pp 120-128.
Lee C, Levin A, Branton D. (1987). Copper staining: a five-minute protein stain for
sodium dodecyl-sulfate polyacrylamide gels. Anal Biochem. 166: 308–12
Lee CY, Whitaker JR (Eds.) (1995). Enzymatic Browning and its Prevention. ACS
Symposium Series 600. American Chemical Society, Washington, DC.
Lee J, Cho YS, Park SY, Lee CK, Yoo B, Moon HB, et al. (2004).Eggplant
anaphylaxis in a patient with latex allergy. J Allergy Clin Immunol. 113: 995-996.
Lee MRF, Winters AL, Scollan ND, Dewhurst RJ, Theodorou MK, Minchin FR,
(2004). Plant mediated lipolysis and proteolysis in red clover with different
polyphenol oxidase activities. J. Sci. Food Agric. 84: 1639–45.
Lee PM, Lee K, Karim MIA. (1991). Biochemical Studies of cocoa bean polyphenol
oxidase. J. Sci. Food Agric. 55: 251-60.
Leon-Reyes A, Spoel SH, De Lange ES, Abe H, Kobayashi M, Tsuda S, et al. (2009)
Ethylene modulates the role of NONEXPRESSOR OF PATHOGENESIS-RELATED
GENES1 in cross talk between salicylate and jasmonate signaling. Plant Physiol.
149: 1797–809.
Leon-Reyes A, Van der Does D, De Lange ES, Delker C, Wasternack C, Van Wees
SC, et al. (2010) Salicylate-mediated suppression of jasmonate-responsive gene
expression in Arabidopsis is targeted downstream of the jasmonate biosynthesis
pathway. Planta 232: 1423–32.
Lerch K. (1995). Tyrosinase:molecularandactive-sitestructure.In:Lee,C.Y.,Whitaker,
J.R. (Eds.), Enzymatic Browning and its Prevention, ACS Symposium Series
600.American Chemical Society, Washington, DC.
BIBLIOGRAPHY
Page | 197
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, et al. (2002).
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools
for in silico analysis of promoter sequences. Nucleic Acids Res 30: 325–7.
Lester RN, Niakan L, Acry WGD. (1986). Origin and domestication of the scarlet
eggplant, Solanum aethiopicum from a S. anquiri in Africa. In Solananceae: biology
and systematics, D’ Arcy, W.G., ed., New York, USA, Columbia University Press,
433-456.
Lester RN, Hasan SMZ. (1991). Origin and domestication of the brinjal eggplant,
Solanum melongena, from S. incanum, in Africa and Asia. In: Hawkes JG, Lester
RN, Nee M, Estrada N, Simmonds NW, eds. Solanaceae III: taxonomy, chemistry,
evolution. London: Royal Botanic Gardens, Kew, 369–388.
Lewin B. (Ed.) (2008). Genes IX. Jones and Bartlett Publishers, Sudbury, MA.
Li L, Steffens JC. (2002). Overexpression of polyphenol oxidase in transgenic tomato
plants results in enhanced bacterial disease resistance. Planta, 215: 239–47.
Li WL, Faris JD, Chittoor JM, Leach JE, Hulbert SH, Liu DJ, Chen PD, Gill BS.
(1999). Genomic mapping of defence response genes in wheat. Theoretical and
Applied Genetics 98, 226–233.
Liang M, Haroldsen V, Cai X, Wu Y, (2006). Expression of a putative laccase gene,
ZmLac1, in maize primary roots under stress. Plant Cell Environ. 29: 746–753.
Lim L, Cannelakis ES. (1970). Adenine-rich polymer associated with rabbit
reticulocyte messenger RNA. Nature 227: 710–12.
Liu JW, Huang YY, Ding J, Liu C, Xiao XD, Ni DJ. (2010). Prokaryotic expression
and purification of Camellia sinensis polyphenol oxidase. J Sci Food Agric.90: 2490-
4.
Lo Scalzo R, Fibiani M, Mennella G, Rotino GL, Dal Sasso M, Culici M, Spallino A,
Braga PC. (2010). Thermal treatment of eggplant (Solanum melongena L.) increases
the antioxidant content and the inhibitory effect on human neutrophil burst. J Agric
Food Chem. 58: 3371-9.
***********
Macheix J, Fleuriet A, Billot J. (1990). Phenolic compounds in fruit processing. In
fruit phenolics, (J. Macheix, A. Fleuriet and J. Billot, Eds.) Pp. 239-312, Crc Press,
Boca Raton, Florida.
Mahanil S, Attajarusit J, Stout MJ, Thipyapong P. (2008). Overexpression of tomato
polyphenol oxidase increases resistance to common cutworm. Plant Sci 174: 456–
66.
Maki H, Morohashi Y, (2006). Development of polyphenol oxidase activity in the
micropylar endosperm of tomato seeds. J. Plant Physiol. 163: 1–10.
BIBLIOGRAPHY
Page | 198
Mao P, Duan M, Wei C, Li Y. (2007). WRKY62 transcription factor acts downstream
of cytosolic NPR1 and negatively regulates jasmonate-responsive gene expression.
Plant Cell Physiol 48: 833–42.
Maquat LE. (1997). RNA export from the nucleus. In mRNA metabolism and post-
transcriptional gene regulation (JB Harford and DR Morris, Eds). Wiley-Liss, New
York, pp. 107–126.
Mari S, Marques L, Breton F, Karamanos Y, Macheix J. (1998). Unfolding and
refolding of active apple polyphenol oxidase. Phytochemistry 49: 1213-17.
Martinez MV, Whitaker JR. (1995). The biochemistry and control of enzymatic
browning. Trends Food Sci. Technol. 6: 195-200.
Marusek CM, Trobaugh NM, Flurkey WH, Inlow JK. (2006). Comparative analysis of
polyphenol oxidase from plant and fungal species. J. Inorg. Biochem. 100: 108–123.
Maruyama K and Sugano S. (1994). Oligo-capping: a simple method to replace the
cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene 138:171-4
Mason HS (1956). Structures and functions of the phenolase complex. Nature 177:
79-81
Mason HS. (1966). Preliminary remarks on polyphenoloxidase. In: Peisach J, Aisen
P, Blumberg WE. (Eds.) The biochemistry of copper. Academic Press, New York, pp.
339–41.
Mason HS. Peterson EW. (1965). Meianoproteins. I. Reactions between enzyme-
generated quinones and amino acids. Biochim. Biophys. Acta 111: 134-146.
Massa AN, Beecher B, Morris CF, (2007). Polyphenol oxidase (PPO) in wheat and
wild relatives: molecular evidence for a multigene family. Theor. Appl. Genet. 114:
1239-47.
Masuda T, Yamashita D, Takeda Y, Yonemori S, (2005). Screening for tyrosinase
inhibitors among the extracts of seashore plants and identification of potent inhibitors
from Garcinia subelliptica. Biosci.Biotechnol. Biochem. 69: 197–201.
Mathew AG and Parpia HAB. (1971). Food browning as a polyphenol reaction. Adv.
Food Res. 29: 75-145.
Matoba Y, Kumagai T, Yamamoto A, Yoshitsu H, Sugiyama M. (2006).
Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible
during catalysis. J. Biol. Chem. 281: 8981–90.
Mayende L, Wilhelmi BS, Pletschke BI. (2006). Cellulases (CMCases) and
polyphenol oxidases from thermophilic Bacillus spp. isolated from compost. Soil
Biology & Biochemistry 38: 2963-2966.
Mayer AM. (1966). Catechol oxidase: enzymatic liberation from sugar beet
chloroplasts. Phytochemistry 5: 1297–1301.
BIBLIOGRAPHY
Page | 199
Mayer AM, (1987). Polyphenol oxidases in plants – recent progress. Phytochemistry
26: 11–20.
Mayer AM, (2006). Polyphenol oxidases in plants and fungi: Going places? A review.
Phytochemistry 67: 2318–31.
Mayer AM, Harel E. (1979). Polyphenol oxidase in plants. Phytochemistry 18: 193–
215.
Mazzafera P, Robinson SP, (2000). Characterization of polyphenol oxidase in coffee.
Phytochemistry 55: 285–296.
McCaig BC, Meagher RB, Dean JFD. (2005). Gene structure and molecular analysis
of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana.
Planta 221: 619–636.
McDowell JM, Dangl JL. (2000). Signal transduction in the plant immune response.
Trends Biochem Sci. 25: 79–82.
Mennella G, Rotino GL, Fibiani M, D'Alessandro A, Francese G, Toppino L,
Cavallanti F, Acciarri N, Lo Scalzo R. (2010) Characterization of health-related
compounds in eggplant (Solanum melongena L.) lines derived from introgression of
allied species. J Agric Food Chem. 58: 7597-603.
Meyers BC, Kaushik S, Nandety RS. (2005). Evolving disease resistance genes.
Current Opinion in Plant Biology 8: 129–134.
Molina C, Grotewold E. (2005). Genome wide analysis of Arabidopsis core
promoters. BMC Genomics. 25: 6:25.
Moore BM, Flurkey WH. (1990). Sodium dodecyl sulfate activation of a plant
polyphenol oxidase. effect of sodium dodecyl sulfate on enzymatic and physical
characteristics of purified broad bean polyphenoloxidase. J. Biol. Chem. 265: 4982-
88.
Morgenstern B. (2004). DIALIGN: Multiple DNA and protein sequence alignment at
BiBiServ. Nucl Acids Res 32: W33-W34.
Motoda S. (1979). Formation of aldehydes from amino acids by polyphenol oxidase”,
J Ferm. Tech. 57; 395-399.
Mueller LA, Hinz U, Uze M, Sautter C, Zryd J-P. (1997). Biochemical
complementation of the betalain biosynthetic pathway in Portulaca grandiflora by a
fungal 3,4-dihydroxy-phenyl-alanine dioxygenase. Planta 203: 260–63.
Mur LA, Kenton P, Atzorn R, Miersch O, Wasternack C. (2006). The outcomes of
concentration-specific interactions between salicylate and jasmonate signaling
include synergy, antagonism, and oxidative stress leading to cell death. Plant
Physiol 140: 249–62.
BIBLIOGRAPHY
Page | 200
Murata M, Kurokami C, Homma S. (1992). Purification and some properties of
chlorogenic acid oxidase from apple (Malus pumila). Biosci Biotechnol Biochem. 56:
1705-10.
Murata M, Chiyo. Kurokami C, Seiichi. Homma S, Matsuhashi C. (1993).
Immunochemical and immunohistochemical study of apple chlorogenic acid oxidase
J Agric Food Chem. 4: 1385-90.
Murata M, Tsurutani M, Tomita M, Homma S, Kaneko K. (1995). Relationship
between apple ripening and browning: changes in polyphenol content and
polyphenol oxidase. J. Agric. Food Chem. 43: 1115-21.
Murata M, Tsurutani M, Hagiwara S, Homma S. (1997). Subcellular location of
polyphenol oxidase in apples. Biosci. Biotech. Biochem. 61: 1495-99.
Murata M, Haruta M, Murai N, Tanikawa N, Nishimura M, Homma S, Itoh Y. (2000).
Transgenic apple (Malus X Domestica) shoot showing low browning potential. J.
Agric. Food Chem. 48: 5243-8
Murray MG, Thompson WF. (1980). Rapid isolation of high molecular weight plant
DNA Nucleic Acids Research. 8: 4321-25.
***********
Nagai T, Suzuki N, (2001). Partial purification of polyphenol oxidase from Chinese
cabbage Brassica rapa L. J. Agric. Food Chem. 49, 3922–26.
Nagasawa M, Sugiyama A, Mori H, Katsuhiro SK, Yamaki S, (2001). Analysis of
genes preferentially expressed in early stage of pollinated and parthenocarpic fruit in
eggplant. J Plant Physiol. 158: 235-40.
Nakamura K, Amano Y, Kagami M. (1983). Purification and some properties of a
polyphenol oxidase from koshu grapes. Am. J. Enol. Vitic. 34: 122-27.
Nakamura M, Hakajima T, Ohba Y, Yamauchi S, Lee BR, Ichisima E, (2000).
Identification of copper ligands in Aspergillus oryzae tyrosinase by site directed
mutagenesis. Biochem. J. 350: 537–545.
Nakayama T, Sato T, Fukui Y, Yonekura-Sakakibara K, Hayashi H, Tanaka Y, et al.
(2001). Specificity, analysis and mechanism of aurone synthesis catalysed by
aureusidin synthase, a polyphenol oxidase homolog responsible for flower coloration.
FEBS Lett. 499: 107–111.
Nakayama T, Yonekura-Sakakibara K, Sato T, et al. (2000). Aureusidin synthase: a
polyphenol oxidase homolog responsible for flower coloration. Science 290: 1163–
1166.
Ndamukong I, Abdallat AA, Thurow C, Fode B, Zander M, Weigel R, et al. (2007).
SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses
JA-responsive PDF1.2 transcription. Plant J 50: 128–39.
BIBLIOGRAPHY
Page | 201
Nei M, Gojobori T, (1986). Simple methods for estimating the numbers of
synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-
426.
Nerya O, Musa R, Khatic S, Tamir S, Vaya J, (2004). Chalcones as potent tyrosinase
inhibitors: the effect of hydroxyl positions and numbers. Phytochemistry 65: 1389–95.
Newman SM, Eannetta NT, Yu H, Prince JP, de Vicente MC, Tanksley SD, Steffens
JC, (1993). Organization of the tomato polyphenol oxidase gene family. Plant Mol.
Biol. 21: 1035–1051.
Newman SM, Tantasawat P, Steffens JC. (2011). Tomato polyphenol oxidase B is
spatially and temporally regulated during development and in response to ethylene.
Molecules 16: 493–517.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G. (1997). Identification of
prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Protein Eng. 10: 1–6
Niki T, Mitsuhara I, Seo S, Ohtsubo N, Ohashi Y. (1998) Antagonistic effect of
salicylic acid and jasmonic acid on the expression of pathogenesis-related (PR)
protein genes in wounded mature tobacco leaves. Plant Cell Physiol. 39: 500–7.
***********
Ohler U, Niemann H. (2001). Identification and analysis of eukaryotic promoters:
recent computational approaches Trends Genet. 17: 56-60.
Ohno S. (1970). Evolution by gene duplication. New York, NY, USA: Springer-
Verlag.
Ohtsubo H, Kumekawa N, Ohtsubo E. (1999). RIRE2, a novel gypsy-type
retrotransposon from rice. Genes & Genetic Systems. 74: 83-91.
Olivares C, Garcia-Borron JC, Solano F. (2002). Identification of active site residues
involved in metal cofactor binding and stereospecific substrate recognition in
mammalian tyrosinase. Implications to the catalytic cycle. Biochemistry 41: 679–86.
Ono E, Hatayama M, Isono Y, Sato T, et al. (2006). Localization of a flavonoids
biosynthetic polyphenol oxidase in vacuoles. Plant J. 45: 133–143.
Ozen A, Colak A, Dincer B, Guner S, (2004). A diphenolase from Persimmon fruits
(Diospyros kaki L.Ebenaceae).Food Chem. 85: 431–437.
***********
Page M, Thorpe R, (2002). Purification of IgG using caprylic acid. In: The Protein
Protocols Handbook (Walker JM, ed.), 2nd edition. Totowa, NJ: Humana Press. p.
985.
Partington JC, Bolwell GP. (1996). Purification of polyphenol oxidase free of the
storage protein patatin from potato tuber.. Phytochemistry. 42: 1499-502.
BIBLIOGRAPHY
Page | 202
Partington JC, Smith C, Bolwell GP. (1999). Changes in location of polyphenol
oxidase in potato (Solanum tuberosum L.) tuber during cell death in response to
impact injury: comparison with wound tissue. Planta 207: 449–60.
Paul B, Gowda LR. (2000). Purification and characterization of a polyphenol oxidase
from the seeds of field bean (Dolichos lablab). J Agric Food Chem. 48: 3839-46.
Pavesi G, Mereghetti P, Mauri G, Pesole G. (2004). Weeder Web: discovery of
transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic Acids Res. 32 (Web Server issue):W199–203.
Penã-Cortés H, Albrecht T, Prat S, Weiler EW, Willmitzer L. (1993). Aspirin prevents
wound-induced gene expression in tomato leaves by blocking jasmonic acid
biosynthesis. Planta 191: 123–8.
Pencreach G, Graille J, Pina M, Verger R. (2002). A new UV spectrophotometric
assay for measuring lipase activity using long-chain triacyglycerols from Aleurites
fordii seeds. Anal.Biochem. 303; 17-24
Pérez-Gilabert M, García-Carmona F. (2000). Characterization of o-diphenol oxidase
and cresolase activities of eggplant polyphenol oxidase. J. Agric. Food. Chem. 48:
695–700.
Perez-Gilabert M, Morte A, Honrubia M, Garcia-Carmona F. (2001). The partial
purification and characterization and histochemical localization of fully latent desert
truffle (Terfezia claveryl, Chatin) polyphenol oxidase. Physiol. Plant. 49: 1922–27.
Perez-Gilabert M, Morte A, Garcia-Carmona F, (2004). Histochemical and
biochemical evidences of the reversibility of tyrosinase activation by SDS. Plant Sci.
166: 365–70.
Petersen M, Brodersen P, Naested H, Andreasson E, Lindhart U, Johansen B, et al.
(2000). Arabidopsis map kinase 4 negatively regulates systemic acquired resistance.
Cell 103: 1111–20.
Pietz J, Dunckelmann R, Rupp A, Rating D, Meinck M, Schmidt H, Bremer H. (1998)
Neurological outcome in adult patients with early-treated phenylketonuria, Eur J
Pediatr. 157; 824- 30.
Pieterse CM, Dicke M. (2007). Plant interactions with microbes and insects: from
molecular mechanisms to ecology. Trends Plant Sci. 12: 564–9.
Pieterse CM, Leon-Reyes A, Van der Ent S, Van Wees SC. (2009). Networking by
small-molecule hormones in plant immunity. Nat. Chem. Biol. 5: 308–16.
Polaina J, MacCabe AP. (1974). Industrial enzymes: structure, function and
applications. The Netherlands: Springer
Pourcel L, Routaboul JM, Kerhoas L, et al. (2005). TRANSPARENT TESTA10
encodes a laccase-like enzyme involved in the oxidative polymerization of flavonoids
in Arabidopsis seed coat. Plant Cell 17: 2966–80.
BIBLIOGRAPHY
Page | 203
Prestridge DS. (1991). SIGNAL SCAN: a computer program that scans DNA
sequences for eukaryotic transcriptional elements. Comput Appl Biosci. 7: 203–6.
Prieto H, Utz D, Castro A, Aguirre C, González-Agüero M, Valdés H, Cifuentes N,
Defilippi BG, Zamora P, Zúñiga G, Campos-Vargas R. (2007). Browning in Annona
cherimola fruit: role of polyphenol oxidase and characterization of a coding sequence
of the enzyme. J Agric Food Chem. 55: 9208-18.
Proudfoot NJ, Brownlee GG. (1976). 3′ Noncoding region sequences in eukaryotic
messenger RNA. Nature 263: 211– 214.
***********
Raffert G, Flurkey WH. (1995). Carbohydrate associated with broad bean
polyphenol oxidase is resistant to enzymatic and chemical deglycosylation.
Phytochemistry 38: 1355-60.
Raj SN, Sarosh BR, Shetty HS. (2006). Induction and accumulation of polyphenol
oxidase activities as implicated in development of resistance against pearl millet
downy mildew disease. Funct. Plant Biol. 33: 563–71.
Rast DM, Baumgarten D, Mayer C, Hollenstein GO. (2003). Cell wall-associated
enzymes in fungi. Phytochemistry 64: 339–66.
Rathjen AH, Robinson SP. (1992) Aberrant processing of polyphenol oxidase in a
variegated grapevine mutant. Plant Physiol. 99: 1619-25
Raymond J, Rakariyatham N, Azanza JL. (1993). Purification and some properties
of polyphenoloxidase from sunflower seeds. Phytochemistry 34: 927-31.
Richter C, Dirks ME, Gronover CS, Prüfer D. (2002). Moerschbacher BM. silencing
and heterologous expression of ppo-2 indicate a specific function of a single
polyphenol oxidase isoform in resistance of dandelion (Taraxacum officinale) against
Pseudomonas syringae pv. tomato. Mol. Plant Microbe Interact. 25: 200-10.
Richter H, Lieberei R, von Schwartzenberg K. (2005). Identification and
characterization of a bryophyte polyphenol oxidase encoding gene from
Physcomitrella patens. Plant Biol. 7: 283–91.
Rizzon C, Ponger L, Gaut BS. (2006). Striking similarities in the genomic distribution
of tandemly arrayed genes in Arabidopsis and rice. PLoS Computational Biology 2:
e115.
Roberts SA, Weichsel A, Grass G, Thakali K, Hazzard JT, Tollin G, Rensing C,
Montfort WR. (2002). Crystal structure and electron transfer kinetics of CueO, a
multicopper oxidase required for copper homeostasis in Escherichia coli. Proc Natl
Acad Sci USA 9: 2766-71
Robinson SP, Dry IB. (1992). Broad bean leaf polyphenol oxidase is a 60 kilodalton
protein, susceptible to proteolytic cleavage. Plant Physiol. 99: 317–23.
BIBLIOGRAPHY
Page | 204
Rodríguez Couto S, Toca Herrera JL. (2006). Industrial and biotechnological
applications of laccases: a review. Biotechnol Adv. 24: 500-13.
Rombauts S, Florquin K, Lescot M, Marchal K, Rouzé P, van de Peer Y. (2003).
Computational approaches to identify promoters and cis-regulatory elements in plant
genomes. Plant Physiol. 132: 1162-76.
Roudsari MH, Signoret A, Crouzet J. (1981). Eggplant polyphenol oxidase:
purification, characterization and properties. Food Chem 7: 227-35.
Roy DC, Pande YD.,(1995). Damage to brinjal by Lep. Pyraustidae and economics
of its insecticidal control. Indian J. Agric. Res., 28: 110-120.
***********
Saeidian S, Keyhani E, Keyhani J. (2007) Effect of ionic detergents, nonionic
detergents, and chaotropic agents on polyphenol oxidase activity from dormant
saffron (Crocus sativus L.) corms. J Agric Food Chem. 55: 3713-9.
Sainsbury F, Lomonossoff GP (2008). Extremely High-Level and Rapid Transient
Protein Production in Plants without the Use of Viral Replication. Plant Physiol. 148:
1212-18.
Saito T, Ito H. (1973). Studies on flowering and fruiting in eggplant – VIII. Effects of
early environmental conditions and cultural treatments and cultural treatments on
flower development and drop J. Japanese Soc. Hort. Sci. 42: 155–162.
Sakai, (1973). Stain Technology 48: 247-249
Sambrook J, Russell DW, (2001). Molecular Cloning: A Laboratory Manual, the Third
edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
Sanchez-Ferrer A, Bru R, Cabanes J, Garcia-Carmona F. (1988). Characterization
of catacholase and cresolase activities of monastrell grape polyphenol oxidase.
Phytochemistry 27: 319-21.
Sanchez-Ferrer A, Bru R, Garcia-Carmona F. (1989a). Novel procedure for
extraction of a latent grape polyphenoloxidase using temperature-induced phase
separation in triton x-114. Plant Physiol. 91: 1481-87.
Sanchez-Ferrer A, Villalba J, Garcia-Carmona F. (1989b). Triton X-114 as a tool for
purifying spinach polyphenol oxidase. Phytochemistry 28: 1321-25.
Sanchez-Ferrer A, Bru R, Garcia-Carmona, F. (1990). Partial purification of a
thylakoid-bound enzyme using temperature-induced phase partitioning. Anal.
Biochem. 184: 279-82.
Sanchez-Ferrer A, Levada F, Garcia-Carmona F. (1993a). Substrate-dependent
activation of latent potato leaf polyphenol oxidase by anionic surfactants. J. Agric.
Food Chem. 41: 1583-86.
BIBLIOGRAPHY
Page | 205
Sanchez-Ferrer A, Laveda F, Garcia-Carmona F. (1993b). Partial purification of
soluble potato polyphenol oxidase by partitioning in aqueous two-phase system. J.
Agric. Food. Chem. 41: 1219-24.
Sanchez-Ferrer A, Laveda F, Garcia-Carmona F. (1993c). Cresolase activity of
potato tuber partially purified in a two-phase partition system. J. Agric. Food. Chem.
41, 1225-28.
Sanchez-Ferrer A, Perez-Gilabert M, Nunez E, Bru R, Garcia-Carmona F. (1994).
Triton X-114 Phase Partitioning In Plant Protein Purification. J. Chrom. 668: 75-83.
Sanchez-Ferrer A, Rodriguez-Lopez JN, Garcia-Canovas F, Garcia-Carmona F.
(1995). Tyrosinase: a comprehensive review of its mechanism. Biochim. Biophys.
Acta. 1247: 1–11.
Sandelin A, Wasserman WW, Lenhard B. (2004). ConSite: web-based prediction of
regulatory elements using cross-species comparison. Nucleic Acids Res. 32: W249-
52.
Sato Y, Wuli B, Sederoff R, Whetten R (2001). Molecular cloning and expression of
eight laccase cDNAs in loblolly pine. (Pinus taeda). J Plant Res. 114: 147–55.
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Scholkopf B,
Weigel D, Lohmann JU. (2005). A gene expression map of Arabidopsis thaliana
development. Nature Genetics 37: 501–506.
Schmitz GE, Sullivan ML, Hatfield RD. (2008). Three polyphenol oxidases from red
clover (Trifolium pratense) differ in enzymatic activities and activation properties. J
Agric Food Chem 56: 272-80.
Schulbach KF, Schulbach D, Marshall, MR. (2011). Method of inhibition of enzymatic
browning in food using hypotaurine and equivalents United States University of
Florida Research Foundation, Inc. (Gainesville, FL, US). 20110151077
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D. (2005).
Specific effects of microRNAs on the plant transcriptome. Dev. Cell 8: 517–27
Score AJ, Palfreyman JW, White NA. (1997). Extracellular phenoloxidase and
peroxidase enzyme production during interspecific fungal interactions International
Biodeterioration and Biodegradation, 39: 225-233.
Sellés-Marchart S, Casado-Vela J, Bru-Martonez R. (2006). Isolation of a latent
polyphenol oxidase from loquat fruit (Eriobortya japonica Lindl.): kinetic
characterization and comparison with the active form. Arch. Biochem. Biophys. 446,
175–185.
Seo S-Y, Sharma VK, Sharma N, (2003). Mushroom tyrosinase: recent prospects. J.
Agric. Food Chem. 51, 2837–53.
Shabalina SA, Ogurtsov AY, Spiridonov AN, Novichkov PS, Spiridonov NA and
Koonin EV. (2010). Distinct Patterns of Expression and Evolution of Intronless and
Intron-Containing Mammalian Genes. Mol. Biol. Evol. 27:1745–1749.
BIBLIOGRAPHY
Page | 206
Shaefer, B. (1995). Revolution in rapid amplification of cDNA ends: new strategies
for polymerase chain reaction cloning of full-length cDNA ends. Analytical Biochem.
227: 255-73.
Shahar T, Henning N, Gutfinger T, Hareven D, Lifschitz E. (1992). The tomato 66.3
kD polyphenoloxidase gene: molecular identification and developmental expression.
Plant Cell 4, 135-47.
Shahmuradov IA, Gammerman AJ, Hancock JM, Bramley PM, Solovyev VV. (2003).
PlantProm: a database of plant promoter sequences. Nucleic Acids Res. 31: 114–
17.
Shahmuradov IA, Solovyev VV, Gammerman AJ. (2005). Plant promoter prediction
with confidence estimation. Nucleic Acids Res. 33: 1069-76.
Shakhnovich BE, Koonin EV (2006). Origins and impact of constraints in evolution of
gene families. Genome Res. 16: 1529–36.
Shatta A, El-Shamei Z. (1999). Differentiation of eggplant (Solanum melongena L.)
polyphenoloxidase, laccase and peroxidase using selective substrates and inhibitors.
Adv Food Sci. 21: 79–83.
Shaw J, Chao L, Chen M. (1991). Isoenzymes of papaya polyphenol oxidase. Bot.
Bull. Acad. Sinica 32: 259-63.
Sherman TD. (1991). A limited survey of the phylogenetic distribution of polyphenol
oxidase.Phytochemistry 30: 2499-506.
Sherman TD, Gardeur TL, Lax AR. (1995). Implications of the phylogenetic
distribution of polyphenol oxidase in plants. In Enzymatic browning and its
prevention, (Lee CY and Whitaker JR, Eds.) Pp. 103-119, ACS Symposium Series
600; American Chemical Society, Washington, DC.
Shevchenko A, Tomas H, Havlis J, Jesper V Olsen JV, Mann M (2006). In-gel
digestion for mass spectrometric characterization of proteins and proteomes. Nat
Protocols 1, 2856-60
Siddharthan R, Siggia ED, van Nimwegen E. (2005). PhyloGibbs: a Gibbs sampling
motif finder that incorporates phylogeny. PLoS Comput Biol. 1: e67.
Siebert PD, Chenchik A, Kellogg DE, Lukyanov KA, Lukyanov SA. (1995). An improved PCR method for walking in uncloned genomic DNA. Nucl. Acids Res. 123: 1087-88.
Simeone R, Pasqualone A, Clodoveo ML, Blanco A. (2002). Genetic mapping of polyphenol oxidase in tetraploid wheat. Cell Mol. Biol. Lett. 7: 763-69.
Simsek S, Yemenicioglu A. (2007). Partial purification and kinetic characterization of mushroom stem polyphenoloxidase and determination of its storage stability in different lyophilized forms. Proc Biochem. 42: 943-950.
Sinha S, Tompa M. (2002). Discovery of novel transcription factor binding sites by
statistical overrepresentation. Nucleic Acids Res. 30: 5549-60.
BIBLIOGRAPHY
Page | 207
Sinha S, Tompa M. (2003). YMF: A program for discovery of novel transcription
factor binding sites by statistical overrepresentation. Nucleic Acids Res. 31: 3586-8
Sinha S, Blanchette M, Tompa M. (2004). PhyME: a probabilistic algorithm for
finding motifs in sets of orthologous sequences. BMC Bioinformatics. 5:170.
Snider C, Jayasinghe S, Hristova K, & White SH (2009). MPEx: A tool for exploring
membrane proteins. Protein Sci. 18: 2624-28.
Sojo MM, Nunez-Delicado E, Garcıa-Carmona F, Sanchez-Ferrer A. (1998a). Partial
purification of a banana polyphenol oxidase using Triton X-114 and PEG 8000 for
removal of polyphenols. J. Agric. Food. Chem. 46: 4924-30.
Sojo MM, Nunez-Delicado E, Garcia-Carmona F, Sanchez-Ferrer A. (1998b).
Monophenolase activity of latent banana pulp polyphenol oxidase. J. Agric. Food
Chem. 46: 4931-36.
Sokolenko A, Fulgosi H, Gal A, Altschmied L, Ohad I, Herrmann RG. (1995). The 64
kDa polypeptide of spinach may not be the KHCII kinase, but a lumen located
polypenol oxidase.FEBS Lett. 371: 176–180.
Sommer A, Néeman E, Steffens JC, Mayer AM, Harel E. (1994). Import, targeting,
and processing of a plant polyphenol oxidase. Plant Physiol. 105: 1301-11
Sommer A, Néeman E, Koussevitzky S, Hunt MD, Steffens JC, Mayer AM, et al.
(1995). The inhibition by Cu2+ of the import of polyphenol oxidase into chloroplasts.
In: Mathis, P. (Ed.), Photosynthesis: From Light to Biosphere, vol. III. Kluwer
Academic Publishers, Dordrecht, pp. 827–830.
Spicher A, Guicherit OM, Duret L, et al. (1998). Highly conserved RNA sequences
that are sensors of environmental stress, Mol. Cell. Biol. 18: 7371–82.
Spoel SH, Johnson JS, Dong X. (2007). Regulation of trade-offs between plant
defenses against pathogens with different lifestyles. Proc Natl Acad Sci. USA 104:
18842–7.
Spoel SH, Koornneef A, Claessens SMC, Korzelius JP, Van Pelt JA, Mueller MJ, et
al. (2003). NPR1 modulates cross-talk between salicylate- and jasmonate-dependent
defense pathways through a novel function in the cytosol. Plant Cell 15: 760–70.
Springer TA. (2001) Immunoaffinity Chromatography. Current Protocols in
Immunology. 8.2.1–8.2.9. John Wiley and Sons, New York
Standart N, Jackson RJ. (1994). Regulation of translation by specific protein/mRNA
interactions. Biochimie 76: 867–879.
Steffens JC, Harel E, Hunt MD. (1994). Polyphenol Oxidase. In recent advances in
phytochemistry, vol. 28, genetic engineering of plant secondary metabolism, (B.E.
Ellis, G.W. Kuroki And H.A. Stafford, Eds.) Pp. 275-312, Plenum Press, New York.
Stelzig DA, Akhtar S, Ribeiro S. (1972). Catechol oxidase of red delicious apple
peel. Phytochemistry 11;535-9.
BIBLIOGRAPHY
Page | 208
Steiner U, Schlieman W, Bıhm H, Strack D. (1999). Tyrosinase involved in betalain
biosynthesis of higher plants. Planta 20: 114–124.
Strack D, Vogt T, Schliemann W. (2003). Recent advances in betalain research.
Phytochemistry 62: 247–269.
Stults NL, Asta LM, Lee YC, (1989). Immobilisation of proteins on oxidised
crosslinked Sepharose preparations by reductive amination. Anal Biochem. 180:
114-9.
Sullivan ML, Hatfield RD, Thoma SL, Samac DA. (2004). Cloning and
characterization of red clover polyphenol oxidase cDNAs and expression of active
protein in Escherichia coli and transgenic alfalfa. Plant Physiol. 136: 3234–44
Sun Y, He Z, Ma W, Xia X. (2011). Alternative splicing in the coding region of Ppo-A1
directly influences the polyphenol oxidase activity in common wheat (Triticum
aestivum L.). Funct. Integr, Genomics. 11: 85-93.
***********
Taketa S, Matsuki K, Amano S, Saisho D, Himi E, Shitsukawa N, Yuo T, Noda K,
Takeda K. (2010). Duplicate polyphenol oxidase genes on barley chromosome 2H
and their functional differentiation in the phenol reaction of spikes and grains. J Exp
Bot. 61: 3983-93.
Tamura K, Dudley J, Nei M, Kumar S, (2007). MEGA4: Molecular Evolutionary
Genetics Analysis (MEGA) software version 4.0. Mol. Biol Evol. 24: 1596-9.
Teiman DM, Handa AK (1989). Immunocytolocalisation of polygalacturonase in
riphening tomato fruit. Plant Physiol 90: 17-20.
Thaler JS, Fidantsef AL, Duffey SS, Bostock RM. (1999). Trade-offs in plant defense
against pathogens and herbivores: a field demonstration of chemical elicitors of
induced resistance. J. Chem. Ecol. 25, 1597–1609.
Thaler JS, Farag MA, Paré PW, Dicke M. (2002). Jasmonate-deficient plants have
reduced direct and indirect defences against herbivores. Ecol. Lett. 5: 764–74.
Thaler JS, Owen B, Higgins VJ. (2004). The role of the jasmonate response in plant
susceptibility to diverse pathogens with a range of lifestyles. Plant Physiol. 135:
530–8.
The TH, Feltkamp TEW. (1970). Conjugation of fluorescein isothiocyanate to
antibodies. I. Experiments on the conditions of conjugation. Immunol. 18: 865-873.
Thijs G, Marchal K, Lescot M, Rombauts S, De Moor B, Rouzé P, Moreau Y. (2002).
A Gibbs sampling method to detect overrepresented motifs in the upstream regions
of coexpressed genes. J Comput Biol. 9: 447-64.
Thipyapong P, Hunt MD, Steffens JC, (1995). Systemic wound induction of potato
(Solanum tuberosum) polyphenol oxidase. Phytochemistry 40:673–76
BIBLIOGRAPHY
Page | 209
Thipyapong P, Joel DM, Steffens JC. (1997a). Differential expression and turnover of
the tomato polyphenol oxidase gene family during vegetative and reproductive
development. Plant Physiol. 113: 707–18
Thipyapong P, Steffens JC. (1997b). Tomato polyphenol oxidase (PPO): differential
response of the PPO F promoter to injuries and wound signals. Plant Physiol.
115:409–418
Thipayong P, Melkonian J, Wolfe DW, Steffens JC, (2004). Suppression of
polyphenol oxidases increases stress tolerance in tomato. Plant Sci. 167, 693–703.
Thipyapong P, Stout MJ, Attajarusit J. (2007). Functional analysis of polyphenol
oxidases by antisense/sense technology. Molecules 12: 1569-95.
Thomma BP, Eggermont K, Penninckx IA, Mauch-Mani B, Vogelsang R, Cammue
BPA, et al. (1998). Separate jasmonate-dependent and salicylate-dependent
defense-response pathways in Arabidopsis are essential for resistance to distinct
microbial pathogens. Proc Natl Acad Sci. USA 95: 15107–11.
Thomma BPHJ, Eggermont K, Broekaert WF, Cammue BPA. (2000). Disease
development of several fungi on Arabidopsis can be reduced by treatment with
methyl jasmonate. Plant Physiol Biochem. 38: 421–7.
Thomma BP, Penninckx IA, Broekaert WF, Cammue BP. (2001). The complexity of
disease signaling in Arabidopsis. Curr Opin Immunol. 13:63–8.
Thygesen PW, Dry IB, Robinson SP. (1995). Polyphenol oxidase in potato. A
multigene family that exhibits differential expression patterns. Plant Physiol. 109:
525–31.
Todaro A, Cavallaro R, Argento S, Branca F, Spagna G. (2011). Study and
characterization of polyphenol oxidase from eggplant (Solanum melongena L.). J
Agric Food Chem. 59: 11244-8.
Todaro A, Peluso O, Catalano AE, Mauromicale G, Spagna G. (2010). Polyphenol
oxidase activity from three sicilian artichoke [ Cynara cardunculus L. Var. scolymus
L. (Fiori)] cultivars: studies and technological application on minimally processed
production. J Agric Food Chem. 3: 1714-8.
Tolbert NE. (1973). Activation of polyphenol oxidase of chloroplasts. Plant Physiol.
51, 234-44.
Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC,
Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier
M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z,
Workman C, Ye C, Zhu Z. (2005). Assessing computational tools for the discovery
of transcription factor binding sites. Nat Biotechnol. 23: 137-44.
Tomiyama K, Stahmann, MA. (1964) Alteration of oxidative enzymes in potato tuber
tissue by infection with Phytophthora infestans. Plant Physiol. 39: 483-490.
BIBLIOGRAPHY
Page | 210
Tong CBS, Hicks KB, Osman SF, Hotchkiss AT, Haines RM. (1995). Oxalic acid in
commercial pectins inhibits browning of raw apple juice. J. Agric. Food Chem. 43:
592-7.
Tran LT, Constabel CP. (2011). The polyphenol oxidase gene family in poplar:
phylogeny, differential expression and identification of a novel, vacuolar isoform.
Planta. 234: 799-813.
Tyagi M Kayastha AM, Sinha B. (2000). The Role of peroxidase and polyphenol
oxidase isozymes in wheat resistance to Alternaria triticina. Biol. Plant. 43: 559-562
***********
Vamos-Vigyazo L, (1981). Polyphenol oxidase and peroxidase in fruits and
vegetables. CRC Crit. Rev. Food Sci. Nutr. 15: 49-127
Vamos-Vigyazo L. (1995). Prevention of browning in fruits and vegetables: a review
of principles and practice. In: Lee, C.Y., Whitaker, J.R. (Eds.), Enzymatic Browning
and its Prevention, ACS Symposium Series 600. American Chemical Society,
Washington, DC, pp. 49–62.
van Gelder CWG, Flurkey WH, Wichers HJ, (1997). Sequence and structural
features of plant and fungal tyrosinases. Phytochemistry 45: 1309–23.
Vaughn KC, Duke SO. (1981). Tissue localization of polyphenol oxidase in
Sorghum. Protoplasma 108; 319-27.
Vaughn KC, Duke SO. (1984a). Function of polyphenol oxidase in higher plants.
Physiol. Plant. 60: 106-112.
Vaughn KC, Duke SO. (1984b). Tentoxin stops the processing of polyphenol
oxidase Into an active protein. Physiol. Plant. 60: 257-261.
Vaughn KC, Lax AR, Duke SO. (1988). Polyphenol Oxidase: The chloroplast
oxidase with no established function. Physiol. Plant. 72: 659-65.
Vavilov NI. (1928). Geographical centers of our cultivated plants. Proc. 5th
International Congress of Genetics, New York, pp. 342-69
Veltman RH, Larrigaudiere C, Wichers HJ, van-Schalk ACR, van der Plas LHW,
Oosterhaven J. (1999). PPO activity and polyphenol content are not limiting factors
during brown core development in pears (Pyrus communis L. cv. Conference). J.
Plant Physiol. 154: 697–702.
Vickers JE, Grof CP, Bonnett GD, Jackson PA, Knight DP, Roberts SE, et al. (2005).
Overexpression of polyphenol oxidase in transgenic sugar cane results in darker
juice and raw sugar. Crop Sci.45: 354–362.
***********
Wagner A. (2008). Gene duplications, robustness and evolutionary innovations.
Bioessays 30: 367–73.
BIBLIOGRAPHY
Page | 211
Wahler D, Gronover CS, Richter C, Foucu F, Twyman RM, Moerschbacher BM,
Fischer R, Muth J, Prüfer D. (2009). Polyphenoloxidase silencing affects latex
coagulation in Taraxacum species. Plant Physiol. 151: 334-46.
Wang J, Constabel CP, (2003). The biochemical characterization of two differentially
expressed polyphenol oxidases from hybrid poplar. Phytochemistry 64, 115–121.
Wang J, Constabel CP. (2004a). Polyphenol oxidase overexpression in transgenic
Populus enhances resistance to herbivory by forest tent caterpillar (Malacosoma
disstria). Planta 220: 87–96.
Wang J, Constabel CP, (2004b). Three polyphenol oxidases from hybrid poplar are
differentially expressed during development and after wounding and elicitor
treatment. Physiol Plant. 122: 344–353.
Wang T, Stormo GD. (2003). Combining phylogenetic data with co-regulated genes
to identify regulatory motifs. Bioinformatics. 19: 2369-80.
Wang T, Stormo GD. (2005). Identifying the conserved network of cis-regulatory
sites of a eukaryotic genome. Proc Natl Acad Sci. U S A. 102: 17400-5.
Watson JD, Baker TA, Bell SP, Gann A, Levine M, Losick R. (2008). Molecular
Biology of the Gene, 6th edition. Cold Spring Harbor Laboratory Press, Cold Spring
Harbor, NY.
Whitaker BD, Stommel JR, (2003). Distribution of hydroxycinnamic acid conjugates
in fruit of commercial eggplant (Solanum melongena L.) cultivars. J. Agric. Food
Chem. 51:3448–54.
Whitaker JR (1994) Principles of enzymology for the food sciences, Second Ed., Pp.
271-556, Marcel Dekker, New York.
Whitaker JR (1995) Polyphenol Oxidase. In food enzymes structure and
mechanism, (D.W.S. Wong, Ed.) Pp. 271-307, Chapman and Hall, New York.
Wichers HJ, Recourt K, Hendriks M, Ebbelaar CFM, Biancone G, Hoeberichts FA, et
al. (2003) Cloning, expression and characterization of two tyrosinase cDNAs from
Agaricus bisporus. Appl. Microbiol. Biotechnol. 61, 336–41.
Winters A, Heywood S, Farrar K, Donnison I, Thomas A, Webb KJ (2009)
Identification of an extensive gene cluster among a family of PPOs in Trifolium
pretense L. (red clover) using a large insert BAC library. BMC Plant Biol. 9: 94.
Wu F, Eannetta NT, Xu Y, Tanksley SD. (2009). A detailed synteny map of the
eggplant genome based on conserved ortholog set II (COSII) markers. Theor. Appl.
Genet. 118: 927-35.
Wu YL, Pan LP, Yu SL, Li HH. (2010). Cloning, microbial expression and structure-
activity relationship of polyphenol oxidases from Camellia sinensis. J Biotechnol.
145: 66-72.
***********
BIBLIOGRAPHY
Page | 212
Yamamoto YY, Ichida H, Matsui M, Obokata J, Sakurai T, Satou M, Seki M,
Shinozaki K, Abe T. (2007a) Identification of plant promoter constituents by analysis
of local distribution of short sequences. BMC Genomics. 8: 67.
Yamamoto YY, Ichida H, Abe T, Suzuki Y, Sugano S, Obokata J. (2007b).
Differentiation of core promoter architecture between plants and mammals revealed
by LDSS analysis. Nucleic Acids Res. 35: 6219-26.
Yamamoto YY, Yoshitsugu T, Sakurai T, Seki M, Shinozaki K, Obokata J. (2009).
Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis.
Plant J. 60: 350-62.
Yamamoto YY, Obokata J. (2008). ppdb: a plant promoter database. Nucleic Acids
Res. 36 (Database issue):D977-81.
Yamamoto YY, Yoshioka Y, Hyakumachi M, Obokata J. (2011). Characteristics of
core promoter types with respect to gene structure and expression in Arabidopsis
thaliana. DNA Res. 18: 333-42.
Yang C, Bolotin E, Jiang T, Sladek FM, Martinez E. (2007). Prevalence of the
initiator over the TATA box in human and yeast genes and identification of DNA
motifs enriched in human TATA-less core promoters. Gene. 389: 52-65.
Yang J, Qing CAO, Wang J et al. (2011). Development and Application of Functional
Markers for Polyphenol Oxidase (PPO) Alleles in Rice. Chinese J Rice Science. 25:
37-42.
Yang Y, Li R, Qi M. (2000). In vivo analysis of plant promoters and transcription
factors by agroinfiltration of tobacco leaves. Plant J. 22: 543–51.
Yoruk R, Marshall MR. (2003). Physicochemical properties and function of
polyphenol oxidase: a review. J. Food Biochem. 27: 361-422.
Yu HF, Kowalski SP, Steffens JC. (1992). Comparison of polyphenol oxidase
expression in glandular trichomes of solanum and lycopersicon species. Plant
Physiol. 100: 1885- 1890.
Yu Y, Tang T, Qian Q, Wang Y, Yan M, Zeng D, Han B, Wu C-I, Shi S, Li J. (2008).
Independent loss of function in a polyphenol oxidase in rice: differentiation in grain
discoloration between subspecies and the role of positive selection under
domestication. The Plant Cell 20, 2946–59.
***********
Zacharius RM, Zell TE, Morrison JH, Woodlock JJ. (1969). Glycoprotein staining
following electrophoresis on acrylamide gels. Anal Biochem. 30: 148-152.
Zawistowski J, Biliaderis CG, Eskin NAM. 1991. Polyphenol oxidase. In oxidative
enzymes in foods, (Robinson DS And Eskin NAM eds.) Pp. 217-273, Elsevier
Science Publishing, New York.
BIBLIOGRAPHY
Page | 213
Zhang X, Henderson IR, Luc C, Green PJ, Jacobsen SE. (2007). Role of RNA
polymerase IV in plant small RNA metabolism. Proc. Natl. Acad. Sci. 104: 4536 –
4541.
Zhou P, Smith NL, Lee CY. (1993). Potential purification and some properties of
monroe apple peel polyphenol oxidase. J. Agric. Food Chem. 41: 532-536.
Zhou Y, Dahler JM, Underhill SJR, Wills RBH. (2003). The enzymes associated with
blackheart development in pineapple. Food Chem. 80, 565–72.
Zhou Y, O’Hare TJ, Jobin-Décor M, Underhill SJR, Wills RBH, Graham MW. (2003).
Transcriptional regulation of a pineapple polyphenol oxidase gene and its
relationship to blackheart. Plant Biotechnol. J. 1: 463-78.