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II Seminario Internacional en Genmica, Protemica, Bioinformtica, y Biologa de Sistemas 2006 "The 2nd International Seminar on Genomics, Proteomics, Bioinformatics and Systems Biology" 2006

MEMORIAS MEMORIES

Grupo de Biologa Molecular, Ambiental y Cncer

Grupo de Bioinformtica

http:www.unicauca.edu.co/seminariobio2006

II Seminario Internacional en Genmica, Protemica, Bioinformtica, y Biologa de Sistemas - 2006 "The 2nd International Seminar on Genomics, Proteomics, Bioinformatics, and Systems Biology - 2006"

MEMORIAS / MEMORIESEditores / Editors Patricia E. Vlez V., M.Sc. Pedro A. Moreno T., Ph.D.

Octubre 25-27 de 2006, Popayn, Colombia http://www.unicauca.edu.co/seminariobio2006 http://bimac.unicauca.edu.co

II Seminario Internacional de Genmica, Protemica, Bioinformtica, y Sistemas Biolgicos Complejos 2006 Memorias Prohibida la reproduccin total o parcial de esta obra, por cualquier medio, sin la autorizacin de sus editores.

ISBN 978-958-9451-21-2 Sello Editorial de la Universidad del Cauca

"The 2nd International Seminar on Genomics, Proteomics, Bioinformatics and Systems Biology"2006

Contenido/ContentsPrlogo ..............................................................................................................................i Comit Organizador ......................................................................................................iii Conferencias / Conferences ............................................................................................0 Revisin de algunos modelos de programacin concurrente por restricciones y sus aplicaciones ....................................................................................................................1 Some models of concurrent programming by restrictions and their applications. A review .........................................................................................................................1 Aranda, Jess A.............................................................................................................1 Aplicando Algoritmos de Clasificacin en la Prediccin de Genes. .....................15 Applying Classification Algorithms in Gene Prediction. ......................................15 Bedoya, Oscar .............................................................................................................15 Representacin de secuencias de ADN y protenas mediante el juego del caos y su anlisis multifractal.....................................................................................................17 Representation of DNA and protein sequences using the chaos game representation and multifractal analysis ..................................................................17 Blanco, Sandra ............................................................................................................17 Caracterizacin en Gneros de Arboles y Familias Vegetales de los Cerros Orientales de Bogot desde el Plioceno Medio hasta el Pleistoceno Superior Mediante Anlisis de Regresin Polinmica y Componentes Principales .............26 Burgos, Javier D..........................................................................................................26 Mathematical Model for Environmental Prioritizing Using Hyperbolic Probability Distributions and Power Laws ..............................................................52 Burgos, Javier D..........................................................................................................52 Toxicogenmica .........................................................................................................64 Toxicogenomics .........................................................................................................64 Cajas Salazar, Nohelia ................................................................................................64 Desarrollo de una Plataforma de Bioinformtica para el Proyecto de Genmica del Caf en Colombia ..................................................................................................66 Development of a Bioinformatics Platform for the Coffee Genomics Project in Colombia ......................................................................................................................66 Cristancho, M..............................................................................................................66 Modelos Estocsticos en la Prediccin de la Regin Reguladora. ........................74 Predicting the Regulatory Region by Stochastic Modeling...................................74 Cuarn J. Margot E .....................................................................................................74

"The 2nd International Seminar on Genomics, Proteomics, Bioinformatics and Systems Biology"2006

Genomas de Plantas de Inters Agrcola Desarrollados en Brasil .......................85 Crop Plants Genome Projects from Brazil .............................................................85 Da Silva, Felipe Rodrigues .........................................................................................85 Aplicacin de la Minera de Datos a la Bioinformtica. ........................................86 Applying Data Mining to Bioinformatics................................................................86 Martinez, Ember Ubeimar...........................................................................................86 Genmica y Bioinformtica Aplicada a un Caso de Escoba de bruja en el Cacao"............................................................................................................................87 Applied Genomics and Bioinformatics to the Witches' Broom Case in Cocoa. 87 Fernandes Formighieri, Eduardo.................................................................................87 Mezcla de Expertos con Redes Bayesianas para la Prediccin de Genes: Una Evaluacin General Sobre 195 Secuencias de Mamiferos.......................................88 Mixture of Experts Using Bayesian Models for Eukaryotic Gene Prediction: a General Evaluation over 195 mammalian sequences ..............................................88 Garreta Luis E. ............................................................................................................88 Infectmica. ...............................................................................................................95 Infectomics .................................................................................................................95 Garcia, Felipe ..............................................................................................................95 De Donde Viene la Inmunolgia, Adonde va? Del Linfocito al Linfochip.........96 Where from did Immunology comes, where do it goes? From the Lymphocyte to the Lymphoship...........................................................................................................96 Klinger, Julio C ...........................................................................................................96 Cadenas de Citokinas, Caos, Complejidad y Polimorfismo Gentico..................98 Cytokines Chaos and Complexity: Immunoregulation by cytokines and Genetic Polymorphism..............................................................................................................98 Klinger, Julio C. ..........................................................................................................98 Una Nueva Aproximacin para el Modelaje y Prediccin de la Estructura Tridimensional de Protenas. .....................................................................................99 A New Approach for Modeling and Predicting the 3D Protein Structure. .........99 Lareo, Leonardo R. .....................................................................................................99 Genmica del Receptor Ionotrpico de Glutamato Activado por N-Metil-DAspartato....................................................................................................................101 Ionotropic Glutamate Receptor Activated by N-Methyl-D-Aspartate Genomics Lareo, Leonardo R. ...................................................................................................101 Genomics and Bioinformatics in Plant-Pathogen Interaction. ...........................103 Genmica y Bioinformtica en Interacciones Planta-Patgeno..........................103 Lpez, Camilo ...........................................................................................................103

"The 2nd International Seminar on Genomics, Proteomics, Bioinformatics and Systems Biology"2006

Yucomics: La Yuca Entra a la Era Genmica y Bioinformtica........................113 Yucomics: Cassava Enters To Genomics and Bioinformatics Era.....................113 Lpez, Camilo ...........................................................................................................113 Identificacin y Anlisis de un Fragmento cromosmico de Pseudomonas syringae pv. phaseolicola nps3121 Involucrado en la Sntesis de Faseolotoxina. ................121 Identification and Analysis of a Chromosomal Fragment of Pseudomonas syringae pv. phaseolicola nps3121 Involved in the Phaseolotoxin synthesis........................121 Lpez-Lpez, Karina.................................................................................................121 Preliminary Analysis for the Presence of Amino-acids in the Protein Structures at the PDB. .....................................................................................................................123 Anlisis Preliminar de la Aparicin de Tripletas de Aminocidos en Estructuras Proteicas del PDB......................................................................................................123 Meja Carmona, Diego Fernando..............................................