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Homework 3
1. Plot the gene expression profile of the assigned 4 genes from NCI60.
2. Intersect the same genes from SOURCE and protein-protein interactions.
click
Click color bar
Similar expression genes
Download raw data
1. Download raw data2. The data will be a .zip file.3. There will be 68 separate files in there and will be difficult to retrieve your genes 68 times.
To obtain a single “cleaned” file, you need to use the following steps.
Cleaned file=normalized and retrieved file.
Select
Find the NCI60 article
Select
Select
1. Select all
3. Select
2. Select
2. Select
1. Cancel the selection
Wait for results.It may take more than 4 hrs.
Here are different steps for data retrieval.
Select
1. Select all data2. Open a new excel file and paste3. See next page
1. Paste to Excel2. Find genes (ie. stk6) from column B
Name in excel 用‘編輯’選項中‘尋找’功能
3. Plot the figure
Please plot your assigned genes by Excel
TACC3
Hec
Nuf2
CENP-A
TPX2
HURP
LymphomaCarcinoma classification
NCI60Normal Tissue
Atlas
HeLa
Cell cycle
database
substrate
http://source.stanford.edu