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Help Desk Update. Dave Clements Galaxy Project Emory University [email protected]. March 2011 GMOD Meeting 5-6 March 2011. Inputs and Outputs. Lunch will be here I think in this room. Dinner Mt Fuji, Brightleaf Square, 7:30pm tonight. Unofficial Headcount Coffee/Tea - PowerPoint PPT Presentation
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Help Desk Update
March 2011 GMOD Meeting 5-6 March 2011
Dave ClementsGalaxy ProjectEmory [email protected]
Inputs and Outputs
• Lunch will be here– I think in this room.
• Dinner– Mt Fuji, Brightleaf Square, 7:30pm tonight.– Unofficial– Headcount
• Coffee/Tea
• Bathrooms
• Twitter: #gmod11
Software Membership Requirements
• Codified in Feb 2010, following Jan 2010 meeting • Revisions discussed and adopted Fall 2010• Version 2 Requirements:
– Meets a common need– Useful over time– Configurable and Extensible– Open source license for all users– Interoperable with existing GMOD components– Commitment of support– Support mailing list that is publicly archived– Publicly accessible code repository
http://gmod.org/wiki/GMOD_Membership
GMOD.org and GMOD on the Web
• New and improved GMOD News as part of move to OICR
• GMOD Project Statistics Page• GMOD Promotion Page• Unified email archive @ Nabble
GMOD Europe 2010 Report
• 4 events, 4 days, 60 people• GMOD Meeting – 19 Talks
– Open Microscopy Environment,
InterMine, BioPivot, CpG Island
and STR Annotator Plugins,
GMOD RPC API, CRAWL, DAS, Cosmic GBrowse, Project Sustainability, …
• BioMart and InterMine workshops• Two Satellite Meetings
– Post Reference Genome Tools– Community Annotation
http://gmod.org/wiki/News/GMOD_Europe_2010_Report
GMOD Evo Hackathon Report
• 5 days, 31 people, 8 subroups
• GMatchbox
• GBrowse_syn2
• JBrowse_syn
• PhyloBox
• GMatchbox-JBrowse-PhyloBox Integration
• Natural Diversity and Phenotypes in Chado
• Galaxy + HyPhy
• BioPerl
Satellites
• Birds of a Feather / SIGs
• Monday, All day, @ NESCent
• Can still sign up
• Topics:– GMOD Evo Hackathon Folowup - Duke Leto– Customizing and Extending JBrowse - Mitch
Skinner– GMOD in the Sequencing Center - Chris
Hemmerich & Dave Clements– Your idea here …
http://gmod.org/wiki/Satellite_Meetings_-_GMOD_Americas_2011
Courses
• 2011: 5th school, 4rd year– Next week @ NESCent, North Carolina, US– 55 applications for 25 slots– InterMine and SOBA new this year.– Plus Apollo, Chado, Galaxy, GBrowse,
GBrowse_syn, GFF3, JBrowse, MAKER, and Tripal
– Tuition $265, < $55/day– Course sessions will become online tutorials
http://gmod.org/wiki/GMOD_Courses
Upcoming Events of Note
• Galaxy Community Conference– May, Lunteren, The Netherlands
• Arthropod Genomics Symposium– June, Kansas City, Missouri, US
• Workshop on Comparative Genomics– July, Fort Collins, Colorado, US
• Fall GMOD Meeting– October, Toronto, Canada
• Plant and Animal Genome– January, San Diego, California, US
• Biocuration 2012 / BioCreative / GMOD– April, Washington DC, United States
http://gmod.org/wiki/Calendar
(Help Desk) Grant Funded
• Enhancing the GMOD Suite of Genome Annotation and Visualization Tools– JBrowse, GBrowse JBrowse, Help Desk
• Help Desk– JBrowse, GBrowse JBrowse, NGS data, transcriptomics,
developmental atlases, population genomic and natural diversity data, workflow and pipeline tools for processing large data sets, and software interoperability
– Continue with documentation, user support, gmod.org, training, courses, outreach, annual survey
GMOD Help Desk: Now Hiring
http://gmod.org/wiki/News/GMOD_Helpdesk_Position_Open
Acknowledgements
Hilmar LappCandace Brown
Jon AumanDan BlankenbergDave Matthews
Steve HellerJohn AikmanRobert BuelsRichard Smith
Nicole WashingtonAlexie Papanicolaou
Josh GoodmanRandy Campbell
Suzi LewisMark YandellSue Brown
Matt BellgardDon Gilbert
…
Sheldon McKayLincoln Stein
Jim HuPeter Van Buren
Daniel RenfroTodd VisionNathan Liles
Maryann MartoneBill Gelbart
Brenley McIntoshChris Hemmerich
Cresko LabJames Taylor
LBCC Adv. DesignBen Faga
Joshua OrvisHeng Li
Simon McGowanJunjun Zhang
…
Scott CainCarson Holt
Brian OsborneEd Lee
Danielle WilsonStephen FicklinMitch SkinnerIan HolmesPhillips Lab
Gos MicklemShelley LawsonJason Swedlow
Barry MooreAlex Kalderimis
Eric StoneSteve Taylor
Richard BaldockBrian O’Connor
Denis Tagu…
Thanks
http://gmod.org/wiki/GMOD_Help_Desk
Dave ClementsGalaxy Project
Emory [email protected]
For everything
Mailing List Archive(s): GMOD @ Nabble
Unified search - no matter where list is hosted
All active lists
SF.net search < good
http://gmod.org/wiki/GMOD_Mailing_Lists http://gmod.827538.n3.nabble.com/
Promotion
• Why?– Increased visibility
Increased adoption More projects contributing back– Increased adoption & development funding
• How?– Cite GMOD, GMOD Components– Powered by GMOD icons– Speakers at your event– Graphics & slides for your presentations, posters– Presentation and event promotion– Brochures (GMOD project, events)– Bling!
http://gmod.org/wiki/GMOD_Promotion
GMOD Logo Program
Logos by John Aikman's Spring 2010 Advanced Design class @ Linn-Benton Community College, Albany, Oregon, United States
http://gmod.org/wiki/Spring_2010_Logo_Program