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HCS Tools Scripting Integrations Antje Janosch Technology Development Studio MPI-CBG Dresden

HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

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Page 1: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

HCS Tools

Scripting Integrations

Antje Janosch – Technology Development Studio

MPI-CBG Dresden

Page 2: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

Antje Janosch, MPI-CBG, Dresden, Germany 2

Screening facility for academic laboratories

Provide full service for automation and cell-based screens, RNAi and

chemical screens

Equipment: liquid handling robots, drop dispensers, plate washers, plate readers,

High Content Screening platforms

MPI-CBG, Dresden, Germany

Page 3: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

HCS Data Analysis

Antje Janosch, MPI-CBG, Dresden, Germany 3

• Cell, image, well based data

• Annotated hit list

Data import

Meta data integration

Quality control

Visualization

Normalization

HCS-

Tools

Advanced

statistics

Page 4: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

HCS-Tools

Antje Janosch, MPI-CBG, Dresden, Germany 4

Da

ta i

mp

ort

Meta data integration

XLS / XLSX

Page 5: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

Antje Janosch, MPI-CBG, Dresden, Germany 5

Visualization

Page 6: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

HCS-Tools

Antje Janosch, MPI-CBG, Dresden, Germany 6

Qu

ality

con

trol

No

rma

liza

tio

n

Advanced

statistics

Page 7: HCS Tools Scripting Integrations - KNIME · HCS Tools Scripting Integrations Antje Janosch – Technology Development Studio MPI-CBG Dresden

Scripting Integrations

Antje Janosch, MPI-CBG, Dresden, Germany 7

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