Glycopeptide MS/MS Spectra

Supplemental Data 2

gi|310722811 Vacuolar invertase 1 [Gossypium hirsutum]

R.LFLFNNASGVNVK.A + Deamidated (NQ)1423.8701

01

Supplemental Data 2

K.ITGSIPAGLTDLELQFMNVSYNR.L + Deamidated (NQ)1423.8701

gi|33469564 Polygalacturonase-inhibiting protein [Gossypium barbadense]02

Supplemental Data 2

K.TVDQYYFGGNNSIR.G + Deamidated (NQ)1634.8681

gi|224065294 Predicted protein [Populus trichocarpa]03

Supplemental Data 2

K.KDENMAGEWNYTSGK.W + Deamidated (NQ); Oxidation (M)1746.8402  

gi|147834599 Hypothetical protein VITISV_010536 [Vitis vinifera]Calreticulin

04

Supplemental Data 2

R.TLANSNLPGFNNTLDR.L + Deamidated (NQ)1747.8700     

gi|19569160 Apoplastic anionic gaiacol peroxidase [Gossypium hirsutum]05

Supplemental Data 2

R.TNLTASGPRPNPQGSYHY.G + Deamidated (NQ)1960.8028       

gi|16648889 Unknown protein [Arabidopsis thaliana]Pectinesterase

06

Supplemental Data 2

R.DELDFEFLGNR.T + Deamidated (NQ)1355.5002       

gi|2244732 Endo-xyloglucan transferase [Gossypium hirsutum]07

Supplemental Data 2

R.QYAGYVTVNESHGR.A + Deamidated (NQ)1581.6491         

gi|102139937 Serine carboxypeptidase (carboxypeptidase D), putative [Musa acuminata]

08

Supplemental Data 2

K.AAESWVHDNVTR.Y + Deamidated (NQ)1385.7208            

gi|296085019 Unnamed protein product [Vitis vinifera]Glucan endo-1,3-beta-glucosidase 9-like

09

Supplemental Data 2

R.VPTVNVSVVDLTVR.L + Deamidated (NQ)1498.7457          

gi|311690856 Putative glyceraldehyde 3-phosphate dehydrogenase [Ophrys sphegodes]

10

Supplemental Data 2

R.MLLNDANSTGEKK.T + Deamidated (NQ); Oxidation (M)1437.5909       

gi|34395384 Putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa Japonica Group]

11

Supplemental Data 2

R.WNVSASGAR.P + Deamidated (NQ)948.4052         

gi|110739787 Pollen-specific protein [Arabidopsis thaliana]12

Supplemental Data 2

R.WNVSASGARPNPQGSFR.Y + Deamidated (NQ)1831.9080        

gi|357476949 Monocopper oxidase-like protein SKU5 [Medicago truncatula]

13

Supplemental Data 2

Supplemental Data 2

K.FPGPTINSTTNNNVVINVR.N + Deamidated (NQ)2057.887     

Cotton_D_gene_10024265 Predicted protein [Populus trichocarpa] Monocopper oxidase-like protein SKU5

14

R.SANGNITPYLGNR.T + Deamidated (NQ)1377.6601        

gi|133902314 Putative protein disulfide isomerase [Gossypium hirsutum]

15

Supplemental Data 2

R.DEIGNISSSHLR.T + Deamidated (NQ)1328.6318       

gi|118488320 Unknown [Populus trichocarpa]PREDICTED: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

16

Supplemental Data 2

R.VPVGPTSGRTNDSAWR.A + Deamidated (NQ)1700.8705     

gi|42409419 Hypothetical protein [Oryza sativa Japonica Group]

17

Supplemental Data 2

T.AEGNQVNVTTGVVNATVENSVFSDR.R + 2 Deamidated (NQ)2609.4349      

gi|157273646 Fasciclin-like arabinogalactan protein 6 [Gossypium hirsutum]

18

Supplemental Data 2

A.YDPLDPNGNVTIK.W + Deamidated (NQ)1446.8152      

gi|255636649 Unknown [Glycine max] COBRA-like protein 4-like19

Supplemental Data 2

T.YNGTNHLIK.K + Deamidated (NQ)1060.6245     

gi|15223517 Calreticulin-1 [Arabidopsis thaliana]20

Supplemental Data 2

K.CNGTKDSISK.L + Deamidated (NQ)1110.4172      

gi|116787210 Unknown [Picea sitchensis] Triosephosphate isomerase

21

Supplemental Data 2

Q.YGIDKDFSNESR.H + Deamidated (NQ)1431.7726      

gi|326523407 Predicted protein [Hordeum vulgare subsp. vulgare]Hypoxia up-regulated protein 1-like

22

Supplemental Data 2

Supplemental Data 2

Y.TFTAAELSNR.T + Deamidated (NQ)1110.5915   

Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa] Dessication related protein

23

Supplemental Data 2

R.GVDEALNETVCVLDDCR.G + Deamidated (NQ)+Carbamidomethylation

1965.7318  

Cotton_D_gene_10008412 Lysosomal alpha mannosidase24

Supplemental Data 2

K.ATVDGQNISFLEAAR.S + Deamidated (NQ)1592.6866 

Cotton_D_gene_10002405 N-Carbamoyl-L-amino acid hydrolase-like [Vitis vinifera]

25

Supplemental Data 2

R.YHAHQYTNGTQCDLTNQPR.E + Deamidated (NQ)+Carbamidomethylation

2304.8245 

Cotton_D_gene_10022550 Conserved hypothetical protein[Ricinus communis]

26

Supplemental Data 2

K.TPVNISDAAHVR.K + Deamidated (NQ)1280.624

Cotton_D_gene_10005734 Predicted :glucosidase 2 subunit beta like[Vitis vinifera]

27

Supplemental Data 2

K.YNSTLSILR.L + Deamidated (NQ)1067.5916

Cotton_D_gene_10001623 Epidermis specific secreted glycoprotein EP1-like[Gossypium hirsutum]

28

Supplemental Data 2

K.GGKFPLNVT.A+ Deamidated (NQ)933.5058

Cotton_D_gene_10004214 Fasciclin like arabinogalactan protein 6 [Gossypium hirsutum]

29

Supplemental Data 2

K.EANVSGVPVVR.L+ Deamidated (NQ)1127.566

Cotton_D_gene_10032854 Radial Swelling 3, glucosidase/hydrolase [Arabidopsis thaliana]

30

Supplemental Data 2

K.NVTQHITSNNVNIR.Y+ Deamidated (NQ)1610.7202

Cotton_D_gene_10016755 Predicted: hypothetical protein [Vitis vinifera] glucan endo-1,3-beta-glucosidase 8

31

Supplemental Data 2

K.VLNLSSNQLSGDLPSSLR.S+ Deamidated (NQ)1900.8851

Cotton_D_gene_10007821 Probable inactive receptor kinase [Vitis vinifera]32

Supplemental Data 2

R.NNSLTGALPPLLVTSPR.L+ Deamidated (NQ)1750.9243

Cotton_D_gene_10007821 Probable inactive receptor kinase [Vitis vinifera]32

Supplemental Data 2

K.STQVANQLLGQLNNSNNGMTVFAPTDNAFSSLK.S + Deamidated (NQ)

3482.7322     

gi|30841338 Arabinogalactan protein [Gossypium hirsutum]33

Supplemental Data 2

R.TQAGDSGDGKFPLNITTSGN.S + Deamidated (NQ)1980.9635     

gi|30841338 Arabinogalactan protein [Gossypium hirsutum]33

Supplemental Data 2

K.KPSLSNLTNDQLK.S + Deamidated (NQ)

1458.8081     

gi|157273638 Fasciclin-like arabinogalactan protein 2 [Gossypium hirsutum]34

Supplemental Data 2

K.VLDTFQNQANNTDQGITIFVPK.D + Deamidated (NQ)

2464.2792      

gi|157273638 Fasciclin-like arabinogalactan protein 2 [Gossypium hirsutum]34

Supplemental Data 2

K.ALTKPSLSNLTDDQFK.S + Deamidated (NQ)1778.9685   

gi|606942 Unknown [Gossypium hirsutum]Fascilin Like Arabinogalactan protein 3

35

Supplemental Data 2

Q.IQANNTVEGITIFVPK.D + Deamidated (NQ)1744.9679  

gi|606942 Unknown [Gossypium hirsutum]Fascilin Like Arabinogalactan protein 3

35

Supplemental Data 2

K.GDSMNLTIPEPGPTTIR.N + Deamidated (NQ); Oxidation (M)

1815.9306      

gi|70927645 Endo-alpha-1,4-glucanase [Gossypium hirsutum]36

Supplemental Data 2

K.SNNFSCAIVVVGEHPYVETK.G + Deamidated (NQ)

2251.1009      

gi|70927645 Endo-alpha-1,4-glucanase [Gossypium hirsutum]36

Supplemental Data 2

R.ITYPPHANYTY.S + Deamidated (NQ)1340.6237      

gi|70927645 Endo-alpha-1,4-glucanase [Gossypium hirsutum]36

Supplemental Data 2

K.VDNITSILEK.G + Deamidated (NQ)1132.6194      

gi|157273646 Fasciclin-like arabinogalactan protein 6 [Gossypium hirsutum]

37

Supplemental Data 2

K.FPLNVTAEGNQVNVTTGVVNATVENSVFSDR.R + 3 Deamidated (NQ)

3281.3277      

gi|157273646 Fasciclin-like arabinogalactan protein 6 [Gossypium hirsutum]

37

Supplemental Data 2

K.TVTVNDFVYSGLAATGNTSNLIK.A + Deamidated (NQ)

2386.2452     

gi|119657105 GLP3 [Gossypium barbadense]38

Supplemental Data 2

R.EYQNTGPGANTSSR.V + Deamidated (NQ)1482.6579     

gi|377824751 Pectin methylesterase [Gossypium hirsutum]39

Supplemental Data 2

K.GYSVITNISEAQTYTAR.N + Deamidated (NQ)1874.9058      

gi|377824751 Pectin methylesterase [Gossypium hirsutum]39

Supplemental Data 2

R.DVVPLNVTR.H + Deamidated (NQ)1013.5810     

gi|319433443 Copper binding protein 4 [Gossypium hirsutum]40

Supplemental Data 2

K.TDYESCNADHPLHNWTTGAGR.D + Deamidated (NQ)

2403.0439      

gi|319433443 Copper binding protein 4 [Gossypium hirsutum]40

Supplemental Data 2

R.SVLYDNK.T + Deamidated (NQ)839.4473    

gi|310722811 vacuolar invertase 1 [Gossypium hirsutum]41

Supplemental Data 2

R.LFLFNNASGVNVK.A + Deamidated (NQ)1423.7399    

gi|310722811 vacuolar invertase 1 [Gossypium hirsutum]41

Supplemental Data 2R.ACCGGGGPYNFNISAR.C + Deamidated (NQ)1701.7330     

gi|356555408 PREDICTED: GDSL esterase/lipase At5g45910-like [Glycine max]

42

Supplemental Data 2K.YYYEVGIGNSSR.R + Deamidated (NQ)1408.6678     

gi|357601486 PAP1 [Gossypium hirsutum]43

Supplemental Data 2K.YFNYTSGFIH.H + Deamidated (NQ)1249.5434    

gi|357601486 PAP1 [Gossypium hirsutum]43

Supplemental Data 2R.TQAGDSGDGEFPLNVTTSGNTVVLK.T + Deamidated (NQ)

2508.2466   

gi|150416577 Arabinogalactan protein 4 [Gossypium hirsutum]

44

Supplemental Data 2K.VFNASGLR.K + Deamidated (NQ)864.4829  

gi|356565586 PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max]

45

Supplemental Data 2R.EASYGHSTLEIKNR.T + Deamidated (NQ)1605.8077   

gi|21464654 Acid phosphatase [Lupinus luteus]46

Supplemental Data 2R.HLPNLNGTIQPAIAK.L + Deamidated (NQ)1587.8790   

gi|33469564 Polygalacturonase-inhibiting protein [Gossypium barbadense]

47

Supplemental Data 2K.CHLNVSNTR.D + Deamidated (NQ)1101.5469   

gi|118485725 Unknown [Populus trichocarpa]48

Supplemental Data 2K.METSVINGTYR.G + Deamidated (NQ); Oxidation (M)

1287.6395   

gi|224071567 Predicted protein [Populus trichocarpa]49

Supplemental Data 2R.DGGNVSDITFSNINISTR.Y + 2 Deamidated (NQ)1911.9479 

gi|224137954 Predicted protein [Populus trichocarpa]50

Supplemental Data 2Q.TVQLYTDQTGANISR.N + Deamidated (NQ)1667.8728 

gi|116784836 Unknown [Picea sitchensis]51

Supplemental Data 2S.IKSNGEAIGAWNYTNAESFIR.F + Deamidated (NQ)2342.1635 

gi|30692673 Heparanase-like protein 3 [Arabidopsis thaliana]52

Supplemental Data 2D.SFPPSQAFFNR.S + Deamidated (NQ)1298.6176

gi|224065148 Predicted protein [Populus trichocarpa]Glucan endo-1,3-beta-glucosidase

53

Supplemental Data 2

R.TQAGQDFGLNVTGLNNQVNVSSGVVETQINNALYQK.K + Deamidated (NQ)

3822.697

gi|150416583 fasciclin-like arabinogalactan protein 1 [Gossypium hirsutum]

54

Supplemental Data 2

R.TQAGQDFGLNVTGLNNQVNVSSGVVETQINNALYQK.K + Deamidated (NQ)

3823.6704

gi|150416583 fasciclin-like arabinogalactan protein 1 [Gossypium hirsutum]

54

Supplemental Data 2

1564.7441

gi|102139937 Serine carboxypeptidase, putative [Musa acuminata]

55

R.QYAGYVTVNESHGR.A+ Deamidated (NQ)

Supplemental Data 2

R.FFTESSGATLLNATLQK.D + Deamidated (NQ)

1828.9166

Cotton_D_gene_10033394 Alpha N-arabinofuranosidase56

Supplemental Data 2

R.FFTESSGATLLNATLQK.D + Deamidated (NQ)

2471.1626

Cotton_D_gene_10014527 Predicted protein [Populus trichocarpa]Reticuline oxidase precursor

57

Supplemental Data 2

R.YNVSSGER.Y + Deamidated (NQ)912.3548

Cotton_D_gene_10016522 Purple acid phosphatase58

Supplemental Data 2

R.EASYGHSTLEIQNR.T + Deamidated (NQ)

1605.8077

Cotton_D_gene_10016522 Purple acid phosphatase58

Supplemental Data 2

K.IGPGISNITTIDEAER.I + Deamidated (NQ)

1686.8928

Cotton_D_gene_10006598 Protein disulfide isomerase59

Supplemental Data 2

K.AEVAAAIKNETR.I + Deamidated (NQ)1273.6945

Cotton_D_gene_10018695 Peroxidase 1 [Litchi chinensis]60

Supplemental Data 2

R.SHIYNDSNIDPSFANSLR.R + Deamidated (NQ)

2051.0088

Cotton_D_gene_10018695 Peroxidase 1 [Litchi chinensis]60

Supplemental Data 2

R.SGNDSVLAPLDR.Q + Deamidated (NQ)1244.6280

Cotton_D_gene_10018695 Peroxidase 1 [Litchi chinensis]60

Supplemental Data 2

R.VNDFIAAALAQANVTR.T + Deamidated (NQ)

1674.8328

Cotton_D_gene_10026954 Predicted protein [Populus trichocarpa]alpha-mannosidase

61

Supplemental Data 2

R.ASLNLTILK.K + Deamidated (NQ)973.6125  

Cotton_D_gene_10003411 Unknown [Populus trichocarpa]GPI anchored glycoprotein membrane precursor

62

Supplemental Data 2

K.NQPCTNSTGANTVPGTEPQFANYPNLLAK.C + Deamidated (NQ)

3105.4327  

Cotton_D_gene_10003411 Unknown [Populus trichocarpa]GPI anchored glycoprotein membrane precursor

62

Supplemental Data 2

N.DVINSTVQPYTFTAAELSNR.T + Deamidated (NQ)

2228.0731

Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa]Dessication related protein

63

Supplemental Data 2

K.AEGLIVPLQLGAENR.T + Deamidated (NQ)

1580.7849

Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa]Dessication related protein

63

Supplemental Data 2

S.MVFGTGNATMPGGLFPR.G + Deamidated (NQ)

1785.8795

Cotton_D_gene_10038147 Predicted protein [Populus trichocarpa]Dessication related protein

63

Supplemental Data 2

R.VNDFVAAAIAQANITR.T+ Deamidated (NQ)

1674.8120

Cotton_D_gene_1008412 Lysosomal alpha-mannosidase64

Supplemental Data 2

K.VIDTFQNQANNTDQGITVFVPK.D + Deamidated (NQ)

2450.2419

Cotton_D_gene_10023812 Fasciclin –like arabinogalactan protein 2 [Gossypium hirsutum]

65

Supplemental Data 2

K.GEFNGSSISVLSR.N+ Deamidated (NQ)1353.6686

Cotton_D_gene_10025549 Disease resistance responsive family[Arabidopsis thaliana]

66

Supplemental Data 2

K.VTDNPADELVAALNANR.T+ Deamidated (NQ)

1783.8048

Cotton_D_gene_10037278 Conserved hypothetical protein[Ricinus communis]

67

Supplemental Data 2

K.AGLLNESAIDK.A+ Deamidated (NQ)1131.6030

Cotton_D_gene_10029587 Beta-xylosidase [Vitis vinifera]68

Supplemental Data 2

R.TQAGDSGDGKFPLNVTTSGN.S+ Deamidated (NQ)

1966.9382

Cotton_D_gene_10015846 Arabinogalactan protein 2 [Gossypium hirsutum]69

Supplemental Data 2

C.NLYNDPNTLASFNVTVPEALR.I+ Deamidated (NQ)

2349.1935

Cotton_D_gene_10009564 Lipid binding protein, putative [Ricinus communis]

70

Supplemental Data 2

N.LLTNSSANGTSPTADCCNSLK.T+ Deamidated (NQ)

2213.0205

Cotton_D_gene_10005290 Lipid binding protein, putative [Ricinus communis]

71

Supplemental Data 2

K.TVQLYTDQTGANISR.S+ Deamidated (NQ)

1667.8728

Cotton_D_gene_10030668 Exordium like protein [Arabidopsis thaliana]72

Supplemental Data 2

G.GSAVGAWNYTNAESFIR.Y+ Deamidated (NQ)

1843.6965

Cotton_D_gene_10016528 Predicted: heparanase-like protein 3-like [Vitis vinefera]

73

Supplemental Data 2

G.GSAVGAWNYTNAESFIR.Y+ Deamidated (NQ)

1578.8358

Cotton_D_gene_10039675 Apoplastic anionic gaiacol peroxidase[Gossypium hirsutum]

74